AlfalfaGEDB | Msa0410500

M. sativa cultivar zhongmu-4 / Msa0410500

KEGG: -
GO: GO:0000018 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010569 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0046686 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1902679 GO:1903506 GO:1903507 GO:1905348 GO:1990904 GO:2000112 GO:2000113 GO:2000779 GO:2001020 GO:2001141
PFAM: PF03470.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410500	XP_024635193.1	97.656	640	14	1	1	639	1	640	0.0	1281

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410500	sp\|Q8VZ79\|IDN2_ARATH	56.051	628	269	3	16	638	21	646	0.0	706

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410500	A0A072UZ29	97.656	640	14	1	1	639	1	640	0.0	1281

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001590	Msa0410500	0.822493	2.299623e-53	-8.615850e-47
Msa0001780	Msa0410500	0.829972	3.816192e-55	-8.615850e-47
Msa0002490	Msa0410500	0.812578	3.950263e-51	-8.615850e-47
Msa0003220	Msa0410500	0.806779	6.968949e-50	-8.615850e-47
Msa0003700	Msa0410500	0.866071	3.728182e-65	-8.615850e-47
Msa0003720	Msa0410500	0.818167	2.257097e-52	-8.615850e-47
Msa0004920	Msa0410500	0.807193	5.697123e-50	-8.615850e-47
Msa0007480	Msa0410500	0.826879	2.129225e-54	-8.615850e-47
Msa0007970	Msa0410500	0.803045	4.203293e-49	-8.615850e-47
Msa0008340	Msa0410500	0.818708	1.702693e-52	-8.615850e-47

Showing 1 to 10 of 1,028 entries

Previous1 2 3 4 5…103Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410500	MtrunA17_Chr3g0111661	97.656	640	14	1	1	639	1	640	0.0	1281
Msa0410500	MtrunA17_Chr5g0435301	64.165	653	214	6	5	639	472	1122	0.0	829
Msa0410500	MtrunA17_Chr5g0435301	57.407	108	45	1	4	110	231	338	1.56e-30	128
Msa0410500	MtrunA17_Chr5g0435301	50.000	138	52	4	1	127	117	248	1.62e-29	125
Msa0410500	MtrunA17_Chr5g0435301	52.542	118	53	2	2	116	350	467	2.88e-29	124
Msa0410500	MtrunA17_Chr5g0435301	55.963	109	46	2	1	108	1	108	3.80e-28	120
Msa0410500	MtrunA17_Chr4g0001231	43.040	625	326	11	22	637	22	625	5.78e-162	478
Msa0410500	MtrunA17_Chr4g0074301	42.289	629	335	9	19	637	19	629	2.11e-160	474
Msa0410500	MtrunA17_Chr4g0070931	42.472	631	331	10	19	637	19	629	1.90e-158	469
Msa0410500	MtrunA17_Chr2g0328251	37.951	693	350	14	13	637	10	690	6.36e-136	413

Showing 1 to 10 of 20 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410500	AT3G48670.2	56.051	628	269	3	16	638	21	646	0.0	706
Msa0410500	AT3G48670.1	56.051	628	269	3	16	638	21	646	0.0	706
Msa0410500	AT3G48670.3	56.051	628	269	3	16	638	21	646	0.0	706
Msa0410500	AT3G12550.5	50.627	638	299	7	13	638	2	635	0.0	625
Msa0410500	AT3G12550.4	50.548	639	299	7	13	638	2	636	0.0	625
Msa0410500	AT3G12550.2	50.548	639	299	7	13	638	2	636	0.0	625
Msa0410500	AT3G12550.1	50.548	639	299	7	13	638	2	636	0.0	625
Msa0410500	AT3G12550.3	49.647	566	270	6	13	567	2	563	0.0	542
Msa0410500	AT1G15910.1	39.641	613	361	7	18	628	17	622	1.50e-143	431
Msa0410500	AT4G00380.1	40.033	612	359	6	19	628	18	623	9.74e-143	429

Showing 1 to 10 of 29 entries

Previous1 2 3Next

Find 154 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCATATAGTGCCGTGG+TGG	0.703811	3_2:-52132219	Msa0410500:CDS
AAAGTTGCTAGAAGAGATGG+AGG	0.496394	3_2:-52135593	Msa0410500:CDS
AAATATTAGGGATTTGACAA+TGG	0.588494	3_2:+52138295	None:intergenic
AAGAAAGTTGCTAGAAGAGA+TGG	0.445164	3_2:-52135596	Msa0410500:CDS
AAGAGAAAAGGCTACTCATT+TGG	0.397330	3_2:-52136862	Msa0410500:CDS
AAGGTAGATGATTTGCATAT+GGG	0.455418	3_2:-52134274	Msa0410500:CDS
AAGTAGAAGGAAAATGGATC+TGG	0.472707	3_2:+52138198	None:intergenic
AAGTCAGAATGTGAAAACCT+CGG	0.672200	3_2:-52137000	Msa0410500:CDS
AATAATTTGTGCATGGCGGC+TGG	0.461442	3_2:-52130993	Msa0410500:three_prime_UTR
AATCCTCTGTGGAATTTCCG+AGG	0.653346	3_2:-52136594	Msa0410500:CDS

Showing 1 to 10 of 154 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTCATAAAAACAAAATGACG+AGG	+	chr3_2:52130786-52130805	None:intergenic	30.0%
AATTGGAAGTAGAAGGAAAA+TGG	+	chr3_2:52130860-52130879	None:intergenic	30.0%
GAAATAGAGAAATGCAGAAA+TGG	+	chr3_2:52130923-52130942	None:intergenic	30.0%
TTGATTATCAACTGAATTGG+GGG	-	chr3_2:52131115-52131134	Msa0410500:intron	30.0%
ATTCCCTTAAATGTGTGATT+GGG	+	chr3_2:52131469-52131488	None:intergenic	30.0%
TGTTATGAAGAACTGAAAAG+TGG	-	chr3_2:52132026-52132045	Msa0410500:intron	30.0%
ACTGTCCTAAGAAAAGAAAA+CGG	-	chr3_2:52132093-52132112	Msa0410500:CDS	30.0%
TTAACTATAACTCCAATCCA+AGG	+	chr3_2:52132335-52132354	None:intergenic	30.0%
GTCTTTATAGAATTCCACAA+GGG	+	chr3_2:52132495-52132514	None:intergenic	30.0%
AGTCTTTATAGAATTCCACA+AGG	+	chr3_2:52132496-52132515	None:intergenic	30.0%

Showing 1 to 10 of 485 entries

Previous1 2 3 4 5…49Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	52130673	52138398	52130673	ID=Msa0410500;Name=Msa0410500
chr3_2	mRNA	52130673	52138398	52130673	ID=Msa0410500-mRNA-1;Parent=Msa0410500;Name=Msa0410500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=242\|1\|1\|1\|0.71\|0.5\|8\|372\|639
chr3_2	exon	52130673	52131042	52130673	ID=Msa0410500-mRNA-1:exon:10319;Parent=Msa0410500-mRNA-1
chr3_2	exon	52132068	52132297	52132068	ID=Msa0410500-mRNA-1:exon:10318;Parent=Msa0410500-mRNA-1
chr3_2	exon	52133425	52133634	52133425	ID=Msa0410500-mRNA-1:exon:10317;Parent=Msa0410500-mRNA-1
chr3_2	exon	52134159	52134446	52134159	ID=Msa0410500-mRNA-1:exon:10316;Parent=Msa0410500-mRNA-1
chr3_2	exon	52134548	52134637	52134548	ID=Msa0410500-mRNA-1:exon:10315;Parent=Msa0410500-mRNA-1
chr3_2	exon	52135591	52135772	52135591	ID=Msa0410500-mRNA-1:exon:10314;Parent=Msa0410500-mRNA-1
chr3_2	exon	52136190	52137138	52136190	ID=Msa0410500-mRNA-1:exon:10313;Parent=Msa0410500-mRNA-1
chr3_2	exon	52138184	52138398	52138184	ID=Msa0410500-mRNA-1:exon:10312;Parent=Msa0410500-mRNA-1
chr3_2	five_prime_UTR	52138184	52138398	52138184	ID=Msa0410500-mRNA-1:five_prime_utr;Parent=Msa0410500-mRNA-1
chr3_2	five_prime_UTR	52137112	52137138	52137112	ID=Msa0410500-mRNA-1:five_prime_utr;Parent=Msa0410500-mRNA-1
chr3_2	CDS	52136190	52137111	52136190	ID=Msa0410500-mRNA-1:cds;Parent=Msa0410500-mRNA-1
chr3_2	CDS	52135591	52135772	52135591	ID=Msa0410500-mRNA-1:cds;Parent=Msa0410500-mRNA-1
chr3_2	CDS	52134548	52134637	52134548	ID=Msa0410500-mRNA-1:cds;Parent=Msa0410500-mRNA-1
chr3_2	CDS	52134159	52134446	52134159	ID=Msa0410500-mRNA-1:cds;Parent=Msa0410500-mRNA-1
chr3_2	CDS	52133425	52133634	52133425	ID=Msa0410500-mRNA-1:cds;Parent=Msa0410500-mRNA-1
chr3_2	CDS	52132070	52132297	52132070	ID=Msa0410500-mRNA-1:cds;Parent=Msa0410500-mRNA-1
chr3_2	three_prime_UTR	52132068	52132069	52132068	ID=Msa0410500-mRNA-1:three_prime_utr;Parent=Msa0410500-mRNA-1
chr3_2	three_prime_UTR	52130673	52131042	52130673	ID=Msa0410500-mRNA-1:three_prime_utr;Parent=Msa0410500-mRNA-1

Gene Sequence

>Msa0410500

ATGTCTCAGAGCTCTGAGGAGGATACTGATATAAGTGATTCTGAGATAAGTGAGTATGAGGAAAAATGTTATGAAGAACTGAAAAGTGGAAGTCAGAATGTGAAAACCTCGGATGAGAAGTTCACTTGTCCATACTGTCCTAAGAAAAGAAAACGGGATTATTTGTACAACGAACTCCTGCAACATGCTTCTGGCGTGGGTCAGAGTAGTTCACAGAAGAGAAAGCCAAGAGAAAAGGCTACTCATTTGGCTTTAGTGAAATATTTGGAAAAGGATCTTATGAATATAGATACTCCATCGGAACCAACTGATAACGGTGCTGATAACGGTGACACAGACACTTCTATTGATTCTGATGAGCAGTTTGTTTGGCCTTGGATTGGAGTTATAGTTAATATTCCCACTAGCAGGGCACAAGATGGGCGTGCTGTTGGGGCTAGTGGTTCCAAGCTTAGGGATGAGTATAGACGCAGGGGTTTCAATCCATATCGAGTCAATCCTCTGTGGAATTTCCGAGGTCACTCTGGTACCGCCCTTGTGGAATTCTATAAAGACTGGCCCGGCTTAGATAATGCACTCGCATTTGAAAAAGCATATGCATCAGACCATCACGGGAAAAAGGATTGGTTTGTTAATACAGAGCCGAAGTCGGGTCTTTATGCATGGGTTGCCCGAGCTGATGACTACAAAAAGAACAATATCATTGGTGAATATCTGCGAAAGATGGGCGATATCAAAACCATACCTGAACTTCAGGAAGAACAAGCTCGAAAGCAGGATAAACTCGTGTCCAATTTGACCAACATTATTGAGGTCAAAAACAAGCACTTAATTGAGATAGAAGCAAGATGCACTGAGACTACAGCCAAAATGAATTCTGCTATGACAGAAAAAGATCAGCTCATTCAAGCTTATAATGAAGAGATAAAGAAAATACAGTCAAGCGCTAAGGATCACTTCCAAAGGATTTTTAATGATCACGAAAAGCTTAAGTCGCAACTGGAAACTCAGAAAAGTGAGCTTGAGTCGCGGAGAATCGCATTGGAAAAGCGTGAAGCACATAATGAAAGTGAAAGAAGAAAGTTGCTAGAAGAGATGGAGGAGAATGCAACGAGAAATAGCTCTCTTCAGATGGCTTCTCTGGAGCAACAGAAAGCAGATATAAATGTTATGAAACTGGCTGAAGATCAGAAGAAACAAAAAGAACAGCTCCATGCTAAAATCATTCAGCTTGAAAGACAACTAGATATGAAACAAAAGCTGGAACTGGAGATTCAGCAACTAAAAGGATCACTAAGTGTGTTGAAGCACATAGAAGATGACGAAGATGTAGAAGTTTTGAAGAAGGTAGATGATTTGCATATGGGTTTGAGGGAGAAGGAACAGTCTCTTCAAGACTTAGATGCACTGAACCAAACACTAATCATCAAGGAGCGTAAGAGTAACGATGAACTGCAGGATGCTCGAAAAGAATTGATTAATGGCATTAAAGATATAGGTACTCGAGTCCATATTGGTGTGAAGAGAATGGGGGAACTTGACACTGGACCGTTCCTTGAAGCTATGAAGAAAAGATATAATGAGGAGGAAGCTGAAGACAAAGCTTCAGAACTATGTTCATTGTGGGAAGAGTATCTAAAAGACCCAGATTGGCATCCATTCAAAGTTGTCATGATTGAAGGGAAAGAAAAGGAAATTATTAAAGATGACGATGAAAAGCTGAATGGACTGAGAAAAGAAGTGGGTGAAAAGGCATATAGTGCCGTGGTGGCATCTTTAACGGAGATTAATGAATATAATCCTAGTGGGAGATATGTAACCTCAGAGTTATGGAACTATAAAGCGGGAAGGAGAGCAACTTTGCAAGAAGGGGTGAAGTTTTTGTTGGACTGCTGGAAACGCAAGAAAGGAATGTTGTGA

Protein sequence

>Msa0410500

MSQSSEEDTDISDSEISEYEEKCYEELKSGSQNVKTSDEKFTCPYCPKKRKRDYLYNELLQHASGVGQSSSQKRKPREKATHLALVKYLEKDLMNIDTPSEPTDNGADNGDTDTSIDSDEQFVWPWIGVIVNIPTSRAQDGRAVGASGSKLRDEYRRRGFNPYRVNPLWNFRGHSGTALVEFYKDWPGLDNALAFEKAYASDHHGKKDWFVNTEPKSGLYAWVARADDYKKNNIIGEYLRKMGDIKTIPELQEEQARKQDKLVSNLTNIIEVKNKHLIEIEARCTETTAKMNSAMTEKDQLIQAYNEEIKKIQSSAKDHFQRIFNDHEKLKSQLETQKSELESRRIALEKREAHNESERRKLLEEMEENATRNSSLQMASLEQQKADINVMKLAEDQKKQKEQLHAKIIQLERQLDMKQKLELEIQQLKGSLSVLKHIEDDEDVEVLKKVDDLHMGLREKEQSLQDLDALNQTLIIKERKSNDELQDARKELINGIKDIGTRVHIGVKRMGELDTGPFLEAMKKRYNEEEAEDKASELCSLWEEYLKDPDWHPFKVVMIEGKEKEIIKDDDEKLNGLRKEVGEKAYSAVVASLTEINEYNPSGRYVTSELWNYKAGRRATLQEGVKFLLDCWKRKKGML*