Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103450 | RHN76663.1 | 83.512 | 467 | 47 | 6 | 1 | 438 | 1 | 466 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103450 | sp|O80592|AAP8_ARATH | 46.578 | 453 | 210 | 6 | 12 | 434 | 21 | 471 | 2.78e-140 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103450 | A0A396JK49 | 83.512 | 467 | 47 | 6 | 1 | 438 | 1 | 466 | 0.0 | 763 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0058580 | Msa0103450 | 0.844079 | 9.437996e-59 | -8.615850e-47 |
| Msa0103450 | Msa0149810 | 0.916523 | 1.607573e-85 | -8.615850e-47 |
| Msa0103450 | Msa0471790 | 0.817061 | 4.008736e-52 | -8.615850e-47 |
| Msa0103450 | Msa0475050 | 0.813482 | 2.503215e-51 | -8.615850e-47 |
| Msa0103450 | Msa1182640 | 0.825215 | 5.292754e-54 | -8.615850e-47 |
| Msa0103450 | Msa1235020 | 0.806584 | 7.662881e-50 | -8.615850e-47 |
| Msa0103450 | Msa1404720 | 0.829685 | 4.483030e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103450 | MtrunA17_Chr1g0146331 | 83.512 | 467 | 47 | 6 | 1 | 438 | 1 | 466 | 0.0 | 763 |
| Msa0103450 | MtrunA17_Chr1g0146391 | 75.219 | 456 | 84 | 3 | 10 | 438 | 4 | 457 | 0.0 | 678 |
| Msa0103450 | MtrunA17_Chr2g0293331 | 69.147 | 457 | 112 | 4 | 9 | 438 | 3 | 457 | 0.0 | 644 |
| Msa0103450 | MtrunA17_Chr3g0140531 | 58.244 | 467 | 164 | 5 | 1 | 438 | 7 | 471 | 0.0 | 551 |
| Msa0103450 | MtrunA17_Chr1g0146411 | 50.769 | 455 | 186 | 9 | 12 | 437 | 27 | 472 | 8.07e-153 | 441 |
| Msa0103450 | MtrunA17_Chr3g0140541 | 46.593 | 455 | 210 | 6 | 12 | 437 | 19 | 469 | 2.28e-138 | 405 |
| Msa0103450 | MtrunA17_Chr1g0146491 | 43.326 | 457 | 228 | 6 | 12 | 438 | 17 | 472 | 3.98e-133 | 391 |
| Msa0103450 | MtrunA17_Chr3g0140761 | 42.670 | 457 | 231 | 7 | 12 | 438 | 27 | 482 | 2.07e-131 | 387 |
| Msa0103450 | MtrunA17_Chr8g0384661 | 42.670 | 457 | 226 | 9 | 8 | 434 | 40 | 490 | 2.45e-126 | 375 |
| Msa0103450 | MtrunA17_Chr1g0206871 | 42.763 | 456 | 219 | 8 | 18 | 434 | 15 | 467 | 1.73e-125 | 372 |
| Msa0103450 | MtrunA17_Chr1g0159761 | 42.511 | 454 | 227 | 7 | 12 | 434 | 21 | 471 | 1.29e-121 | 362 |
| Msa0103450 | MtrunA17_Chr3g0125081 | 42.418 | 455 | 223 | 7 | 12 | 434 | 28 | 475 | 5.33e-121 | 360 |
| Msa0103450 | MtrunA17_Chr3g0125101 | 42.544 | 456 | 222 | 8 | 12 | 434 | 28 | 476 | 1.38e-118 | 354 |
| Msa0103450 | MtrunA17_Chr3g0130651 | 44.248 | 452 | 216 | 9 | 12 | 434 | 20 | 464 | 1.61e-117 | 351 |
| Msa0103450 | MtrunA17_Chr3g0125091 | 41.850 | 454 | 228 | 7 | 12 | 434 | 28 | 476 | 5.48e-117 | 350 |
| Msa0103450 | MtrunA17_Chr3g0130641 | 40.919 | 457 | 228 | 10 | 12 | 435 | 27 | 474 | 9.46e-117 | 350 |
| Msa0103450 | MtrunA17_Chr4g0037201 | 40.959 | 459 | 232 | 9 | 12 | 434 | 53 | 508 | 9.85e-117 | 351 |
| Msa0103450 | MtrunA17_Chr3g0103231 | 37.916 | 451 | 240 | 9 | 12 | 429 | 17 | 460 | 2.09e-105 | 320 |
| Msa0103450 | MtrunA17_Chr3g0103211 | 38.375 | 443 | 238 | 8 | 12 | 424 | 17 | 454 | 2.07e-102 | 312 |
| Msa0103450 | MtrunA17_Chr3g0103271 | 38.341 | 446 | 235 | 8 | 12 | 424 | 21 | 459 | 2.85e-98 | 302 |
| Msa0103450 | MtrunA17_Chr5g0447221 | 37.255 | 459 | 245 | 11 | 2 | 428 | 18 | 465 | 4.47e-98 | 301 |
| Msa0103450 | MtrunA17_Chr3g0103221 | 38.274 | 452 | 233 | 13 | 15 | 430 | 27 | 468 | 4.73e-97 | 299 |
| Msa0103450 | MtrunA17_Chr1g0206851 | 44.737 | 304 | 158 | 4 | 134 | 434 | 81 | 377 | 9.95e-91 | 280 |
| Msa0103450 | MtrunA17_Chr1g0206831 | 45.548 | 292 | 149 | 4 | 133 | 421 | 43 | 327 | 1.74e-89 | 275 |
| Msa0103450 | MtrunA17_Chr5g0447231 | 35.242 | 454 | 258 | 10 | 2 | 424 | 9 | 457 | 7.90e-88 | 275 |
| Msa0103450 | MtrunA17_Chr3g0103251 | 35.202 | 321 | 175 | 4 | 134 | 424 | 50 | 367 | 1.12e-70 | 228 |
| Msa0103450 | MtrunA17_Chr1g0206821 | 47.248 | 218 | 112 | 2 | 220 | 434 | 310 | 527 | 4.63e-68 | 225 |
| Msa0103450 | MtrunA17_Chr1g0206821 | 37.402 | 254 | 127 | 5 | 1 | 223 | 1 | 253 | 3.92e-45 | 164 |
| Msa0103450 | MtrunA17_Chr5g0402151 | 35.235 | 298 | 128 | 9 | 21 | 289 | 3 | 264 | 9.09e-49 | 167 |
| Msa0103450 | MtrunA17_Chr3g0130661 | 42.541 | 181 | 98 | 3 | 258 | 435 | 1 | 178 | 9.78e-48 | 162 |
| Msa0103450 | MtrunA17_Chr3g0130671 | 39.171 | 217 | 102 | 7 | 12 | 201 | 33 | 246 | 5.79e-38 | 139 |
| Msa0103450 | MtrunA17_Chr1g0206841 | 58.889 | 90 | 37 | 0 | 9 | 98 | 12 | 101 | 4.13e-31 | 115 |
| Msa0103450 | MtrunA17_Chr6g0458931 | 25.275 | 455 | 263 | 14 | 5 | 420 | 20 | 436 | 6.78e-31 | 123 |
| Msa0103450 | MtrunA17_Chr4g0057851 | 25.287 | 435 | 253 | 13 | 9 | 411 | 1 | 395 | 8.83e-30 | 120 |
| Msa0103450 | MtrunA17_Chr1g0206861 | 58.427 | 89 | 37 | 0 | 10 | 98 | 13 | 101 | 1.87e-28 | 109 |
| Msa0103450 | MtrunA17_Chr3g0103261 | 57.143 | 84 | 36 | 0 | 12 | 95 | 17 | 100 | 4.22e-28 | 108 |
| Msa0103450 | MtrunA17_Chr1g0184721 | 23.385 | 449 | 293 | 9 | 11 | 434 | 15 | 437 | 1.28e-27 | 114 |
| Msa0103450 | MtrunA17_Chr3g0077651 | 25.771 | 454 | 269 | 11 | 16 | 435 | 50 | 469 | 1.48e-27 | 114 |
| Msa0103450 | MtrunA17_Chr2g0331721 | 24.582 | 419 | 241 | 12 | 17 | 399 | 46 | 425 | 1.57e-26 | 111 |
| Msa0103450 | MtrunA17_Chr6g0458921 | 25.714 | 385 | 215 | 13 | 9 | 357 | 1 | 350 | 1.82e-24 | 105 |
| Msa0103450 | MtrunA17_Chr2g0328081 | 26.440 | 382 | 210 | 13 | 10 | 357 | 6 | 350 | 1.98e-24 | 104 |
| Msa0103450 | MtrunA17_Chr1g0198541 | 23.747 | 459 | 280 | 10 | 9 | 434 | 15 | 436 | 3.06e-24 | 104 |
| Msa0103450 | MtrunA17_Chr6g0459031 | 26.558 | 369 | 209 | 13 | 10 | 340 | 3 | 347 | 4.08e-24 | 103 |
| Msa0103450 | MtrunA17_Chr1g0146351 | 60.563 | 71 | 27 | 1 | 28 | 98 | 13 | 82 | 1.02e-23 | 95.5 |
| Msa0103450 | MtrunA17_Chr6g0459011 | 24.939 | 413 | 246 | 13 | 34 | 418 | 1 | 377 | 9.66e-23 | 99.4 |
| Msa0103450 | MtrunA17_Chr5g0422741 | 25.178 | 421 | 260 | 11 | 5 | 399 | 12 | 403 | 1.05e-22 | 99.8 |
| Msa0103450 | MtrunA17_Chr7g0230011 | 25.776 | 322 | 195 | 10 | 16 | 309 | 28 | 333 | 2.71e-22 | 98.6 |
| Msa0103450 | MtrunA17_Chr6g0459021 | 24.922 | 321 | 197 | 10 | 17 | 309 | 33 | 337 | 4.21e-22 | 98.2 |
| Msa0103450 | MtrunA17_Chr1g0198531 | 24.466 | 421 | 251 | 9 | 10 | 399 | 17 | 401 | 4.08e-21 | 95.1 |
| Msa0103450 | MtrunA17_Chr8g0387941 | 23.414 | 457 | 293 | 16 | 10 | 434 | 16 | 447 | 7.85e-21 | 94.4 |
| Msa0103450 | MtrunA17_Chr3g0122921 | 24.308 | 325 | 194 | 9 | 17 | 309 | 32 | 336 | 7.94e-20 | 91.3 |
| Msa0103450 | MtrunA17_Chr8g0376991 | 23.934 | 305 | 195 | 8 | 138 | 435 | 162 | 436 | 5.49e-19 | 89.0 |
| Msa0103450 | MtrunA17_Chr6g0459001 | 26.688 | 311 | 184 | 12 | 17 | 299 | 21 | 315 | 1.97e-18 | 87.4 |
| Msa0103450 | MtrunA17_Chr4g0027241 | 24.096 | 415 | 240 | 16 | 10 | 383 | 28 | 408 | 3.30e-16 | 80.5 |
| Msa0103450 | MtrunA17_Chr1g0198081 | 23.476 | 443 | 270 | 19 | 29 | 435 | 70 | 479 | 1.02e-13 | 72.8 |
| Msa0103450 | MtrunA17_Chr4g0038711 | 21.758 | 455 | 279 | 13 | 18 | 427 | 70 | 492 | 7.88e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103450 | AT1G10010.1 | 46.578 | 453 | 210 | 6 | 12 | 434 | 21 | 471 | 2.83e-141 | 412 |
| Msa0103450 | AT1G10010.2 | 46.578 | 453 | 210 | 6 | 12 | 434 | 22 | 472 | 3.12e-141 | 412 |
| Msa0103450 | AT1G58360.1 | 45.475 | 453 | 215 | 6 | 12 | 434 | 30 | 480 | 1.74e-140 | 411 |
| Msa0103450 | AT5G49630.1 | 44.273 | 454 | 221 | 7 | 12 | 434 | 26 | 478 | 4.66e-133 | 392 |
| Msa0103450 | AT1G77380.1 | 45.254 | 453 | 215 | 9 | 12 | 434 | 23 | 472 | 2.69e-127 | 377 |
| Msa0103450 | AT1G44100.1 | 41.703 | 458 | 230 | 8 | 12 | 434 | 21 | 476 | 1.82e-121 | 362 |
| Msa0103450 | AT5G63850.1 | 40.529 | 454 | 236 | 8 | 12 | 434 | 12 | 462 | 5.61e-120 | 358 |
| Msa0103450 | AT5G09220.1 | 39.427 | 454 | 241 | 7 | 12 | 434 | 39 | 489 | 1.66e-117 | 352 |
| Msa0103450 | AT5G23810.1 | 40.046 | 432 | 211 | 9 | 11 | 403 | 18 | 440 | 1.18e-95 | 295 |
| Msa0103450 | AT5G23810.2 | 40.476 | 336 | 155 | 8 | 11 | 310 | 18 | 344 | 4.54e-69 | 223 |
| Msa0103450 | AT5G23810.4 | 37.652 | 247 | 111 | 7 | 11 | 223 | 18 | 255 | 1.74e-38 | 140 |
| Msa0103450 | AT5G23810.5 | 40.722 | 194 | 77 | 5 | 11 | 170 | 18 | 207 | 1.44e-33 | 126 |
| Msa0103450 | AT5G23810.3 | 40.722 | 194 | 77 | 5 | 11 | 170 | 18 | 207 | 1.44e-33 | 126 |
| Msa0103450 | AT5G40780.1 | 26.559 | 433 | 252 | 15 | 17 | 420 | 32 | 427 | 9.43e-31 | 123 |
| Msa0103450 | AT1G48640.1 | 25.676 | 444 | 276 | 12 | 17 | 435 | 39 | 453 | 9.98e-31 | 123 |
| Msa0103450 | AT5G40780.3 | 26.683 | 416 | 239 | 15 | 34 | 420 | 1 | 379 | 1.17e-27 | 114 |
| Msa0103450 | AT5G40780.2 | 26.683 | 416 | 239 | 15 | 34 | 420 | 1 | 379 | 1.17e-27 | 114 |
| Msa0103450 | AT1G24400.1 | 25.110 | 454 | 266 | 12 | 17 | 435 | 27 | 441 | 3.36e-26 | 110 |
| Msa0103450 | AT3G01760.1 | 24.099 | 444 | 276 | 11 | 17 | 430 | 30 | 442 | 2.76e-23 | 102 |
| Msa0103450 | AT1G61270.1 | 22.601 | 469 | 286 | 12 | 3 | 432 | 12 | 442 | 1.34e-22 | 100 |
| Msa0103450 | AT1G67640.1 | 23.348 | 454 | 274 | 13 | 17 | 435 | 27 | 441 | 3.19e-21 | 95.9 |
| Msa0103450 | AT1G71680.1 | 23.581 | 458 | 269 | 10 | 17 | 435 | 33 | 448 | 6.98e-21 | 95.1 |
| Msa0103450 | AT1G71680.2 | 25.301 | 332 | 183 | 8 | 17 | 309 | 33 | 338 | 8.44e-20 | 90.9 |
| Msa0103450 | AT1G08230.2 | 26.154 | 455 | 267 | 15 | 18 | 435 | 27 | 449 | 1.01e-18 | 88.6 |
| Msa0103450 | AT1G25530.1 | 23.111 | 450 | 294 | 11 | 10 | 435 | 19 | 440 | 2.05e-18 | 87.4 |
| Msa0103450 | AT5G41800.1 | 21.935 | 465 | 297 | 14 | 8 | 435 | 12 | 447 | 6.36e-18 | 86.3 |
| Msa0103450 | AT1G08230.4 | 27.586 | 319 | 182 | 12 | 134 | 435 | 44 | 330 | 1.49e-13 | 72.0 |
| Msa0103450 | AT1G08230.6 | 27.586 | 319 | 182 | 12 | 134 | 435 | 44 | 330 | 1.49e-13 | 72.0 |
| Msa0103450 | AT1G08230.5 | 27.586 | 319 | 182 | 12 | 134 | 435 | 44 | 330 | 1.49e-13 | 72.0 |
| Msa0103450 | AT1G08230.3 | 27.586 | 319 | 182 | 12 | 134 | 435 | 63 | 349 | 2.09e-13 | 71.6 |
Find 109 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCATATATTTATAAAA+AGG | 0.186060 | 1_3:+10624866 | Msa0103450:three_prime_UTR |
| TTTATAAATATATGAGAATA+AGG | 0.189743 | 1_3:-10624862 | None:intergenic |
| TGAACTTGTTTAGGTTAATT+TGG | 0.199749 | 1_3:+10624467 | Msa0103450:CDS |
| CTGTTGGGAGCGATTGGATT+TGG | 0.205722 | 1_3:+10624559 | Msa0103450:CDS |
| GTCTAATTACAAAGGCATTT+TGG | 0.206514 | 1_3:+10623755 | Msa0103450:intron |
| TCTGAGTAAGCCGGTTTATC+TGG | 0.228885 | 1_3:-10621291 | None:intergenic |
| CAATCAATTTGAACTTGTTT+AGG | 0.255382 | 1_3:+10624458 | Msa0103450:CDS |
| TTATAGTTCTATTTGATAAT+AGG | 0.261910 | 1_3:+10622980 | Msa0103450:intron |
| TGCCTTGGCTATGCTGCTTT+TGG | 0.276773 | 1_3:+10624127 | Msa0103450:CDS |
| AGCATAACCGGAACACAAAT+AGG | 0.277840 | 1_3:+10623805 | Msa0103450:CDS |
| TTCTCTGCAGCAGTTAGTTC+TGG | 0.283344 | 1_3:-10623829 | None:intergenic |
| TGAGCAATATGCATTTGTAT+AGG | 0.297844 | 1_3:-10624601 | None:intergenic |
| CCACATGATTGGAGCATATC+AGG | 0.303203 | 1_3:+10624231 | Msa0103450:CDS |
| TTCTGGCCCTATTTGTGTTC+CGG | 0.312048 | 1_3:-10623812 | None:intergenic |
| TGTTGGGAGCGATTGGATTT+GGG | 0.348025 | 1_3:+10624560 | Msa0103450:CDS |
| GAGCAATATGCATTTGTATA+GGG | 0.351412 | 1_3:-10624600 | None:intergenic |
| AAGGTACATACCAGTTCTTT+TGG | 0.354167 | 1_3:-10621401 | None:intergenic |
| CAGGGGTGTTGGCTCTAGCA+TGG | 0.361926 | 1_3:+10622340 | Msa0103450:CDS |
| TACTGTTATTTACGACATAA+TGG | 0.366442 | 1_3:+10623906 | Msa0103450:CDS |
| TTATAAATATATGAGAATAA+GGG | 0.384308 | 1_3:-10624861 | None:intergenic |
| CCATGTCAGTTTGTGAAAGT+TGG | 0.389481 | 1_3:-10623468 | None:intergenic |
| TGTAGTAGGGGCAGGGGTGT+TGG | 0.391643 | 1_3:+10622329 | Msa0103450:CDS |
| GTCTTGTAGCTGATTGCTAT+AGG | 0.413676 | 1_3:+10622439 | Msa0103450:CDS |
| CAATCAATTTCTAGCTCTGT+TGG | 0.414936 | 1_3:+10624543 | Msa0103450:CDS |
| TACACTCATGATGATATAGA+TGG | 0.421345 | 1_3:-10621219 | None:intergenic |
| TCCAAGGGCTACTATCCAAT+AGG | 0.424071 | 1_3:-10624191 | None:intergenic |
| ATGAAAAGGGCCAATGTGAC+AGG | 0.425494 | 1_3:+10624067 | Msa0103450:CDS |
| CTGAGTAAGCCGGTTTATCT+GGG | 0.427376 | 1_3:-10621290 | None:intergenic |
| ATTGCCGCTATCACCTCGTT+TGG | 0.429141 | 1_3:+10623500 | Msa0103450:CDS |
| CATGTCAGTTTGTGAAAGTT+GGG | 0.432632 | 1_3:-10623467 | None:intergenic |
| CAAGCTGTCAAGAGCTACTT+AGG | 0.436812 | 1_3:+10622504 | Msa0103450:CDS |
| GGGGCATCTACTAGCATAAC+CGG | 0.440485 | 1_3:+10623793 | Msa0103450:CDS |
| AGGGGTGTTGGCTCTAGCAT+GGG | 0.441108 | 1_3:+10622341 | Msa0103450:CDS |
| CAGAAAATAAACAAATGAAA+AGG | 0.441906 | 1_3:+10624053 | Msa0103450:CDS |
| AATAACTACCCCAGATAAAC+CGG | 0.445044 | 1_3:+10621281 | Msa0103450:five_prime_UTR |
| CATATCATAACAGTTGTAGT+AGG | 0.450490 | 1_3:+10622315 | Msa0103450:CDS |
| AATCAATTTCTAGCTCTGTT+GGG | 0.451943 | 1_3:+10624544 | Msa0103450:CDS |
| TACCAGCTATCCATCCTAGT+TGG | 0.452399 | 1_3:-10622371 | None:intergenic |
| GGTTATGTATTCATTGCAGT+TGG | 0.455037 | 1_3:+10623521 | Msa0103450:CDS |
| TGCATAGTAATCCACATGAT+TGG | 0.455742 | 1_3:+10624220 | Msa0103450:CDS |
| ATAGTATATATGTCGAGCTT+AGG | 0.460599 | 1_3:+10624819 | Msa0103450:three_prime_UTR |
| GCAATATTGCAGGGAATGTA+TGG | 0.460609 | 1_3:+10622280 | Msa0103450:intron |
| GCATAACCGGAACACAAATA+GGG | 0.463229 | 1_3:+10623806 | Msa0103450:CDS |
| CTAGCTCTGTTGGGAGCGAT+TGG | 0.463495 | 1_3:+10624553 | Msa0103450:CDS |
| TACAAAGACAATTCAAAAGT+TGG | 0.463664 | 1_3:-10624663 | None:intergenic |
| CTAGGATGGATAGCTGGTAT+AGG | 0.464604 | 1_3:+10622375 | Msa0103450:CDS |
| GTGGCGTGTTTGCACTTCAA+TGG | 0.465802 | 1_3:+10623855 | Msa0103450:CDS |
| GATGGTAAAGCCAAAAGAAC+TGG | 0.469877 | 1_3:+10621391 | Msa0103450:CDS |
| TTCCTACTATGTAGTTGCCT+TGG | 0.474242 | 1_3:+10624112 | Msa0103450:CDS |
| GTTGGCTCTAGCATGGGCCA+TGG | 0.482757 | 1_3:+10622347 | Msa0103450:CDS |
| AGAAAATAAACAAATGAAAA+GGG | 0.483828 | 1_3:+10624054 | Msa0103450:CDS |
| TATTACACAAACTCTAATCA+TGG | 0.488415 | 1_3:+10621357 | Msa0103450:CDS |
| ACCAGCTATCCATCCTAGTT+GGG | 0.489518 | 1_3:-10622370 | None:intergenic |
| TTTGGCTAAGAGCAGGAAAA+GGG | 0.492627 | 1_3:+10623773 | Msa0103450:CDS |
| ATAACAGTTGTAGTAGGGGC+AGG | 0.494302 | 1_3:+10622321 | Msa0103450:CDS |
| CCAAGGGCTACTATCCAATA+GGG | 0.504386 | 1_3:-10624190 | None:intergenic |
| TGGCGTGTTTGCACTTCAAT+GGG | 0.506484 | 1_3:+10623856 | Msa0103450:CDS |
| TGGCATTGCCATGGCAAGAA+TGG | 0.508311 | 1_3:-10624515 | None:intergenic |
| ATAGGGAAGAAGACAACTAA+TGG | 0.514205 | 1_3:-10624583 | None:intergenic |
| CCCTATTGGATAGTAGCCCT+TGG | 0.514375 | 1_3:+10624190 | Msa0103450:CDS |
| GGAACGATGCAAGTGATTTG+TGG | 0.514681 | 1_3:+10623004 | Msa0103450:CDS |
| TCTTTGTATGGTTGTCACAT+TGG | 0.518742 | 1_3:+10624678 | Msa0103450:CDS |
| ATATCATAACAGTTGTAGTA+GGG | 0.519670 | 1_3:+10622316 | Msa0103450:CDS |
| CACCACGCACGTTAAATGAA+TGG | 0.521187 | 1_3:-10624432 | None:intergenic |
| GGTTGTCACATTGGCTGCTG+TGG | 0.524689 | 1_3:+10624687 | Msa0103450:CDS |
| AGCCAAGGCAACTACATAGT+AGG | 0.529056 | 1_3:-10624114 | None:intergenic |
| AGATAACTAAATGATATAAG+TGG | 0.534402 | 1_3:+10621311 | Msa0103450:five_prime_UTR |
| TAGTTCTATTTGATAATAGG+TGG | 0.535827 | 1_3:+10622983 | Msa0103450:intron |
| GCATGGGCCATGGCCCAACT+AGG | 0.536744 | 1_3:+10622357 | Msa0103450:CDS |
| GACCATTCATTTAACGTGCG+TGG | 0.538836 | 1_3:+10624430 | Msa0103450:CDS |
| GGGCCATGGCCCAACTAGGA+TGG | 0.542624 | 1_3:+10622361 | Msa0103450:CDS |
| CCAACTTTCACAAACTGACA+TGG | 0.543853 | 1_3:+10623468 | Msa0103450:CDS |
| AACAGTTGTAGTAGGGGCAG+GGG | 0.543889 | 1_3:+10622323 | Msa0103450:CDS |
| AATCCCACCAAATAAAACCT+TGG | 0.546835 | 1_3:-10624923 | None:intergenic |
| ATTTAGTTATCTGAGTAAGC+CGG | 0.551482 | 1_3:-10621300 | None:intergenic |
| TATCCATCCTAGTTGGGCCA+TGG | 0.551644 | 1_3:-10622364 | None:intergenic |
| CATTGATACCCCTGTCACAT+TGG | 0.552253 | 1_3:-10624077 | None:intergenic |
| AAACGAGGTGATAGCGGCAA+TGG | 0.553749 | 1_3:-10623498 | None:intergenic |
| GCCCAACTAGGATGGATAGC+TGG | 0.559262 | 1_3:+10622369 | Msa0103450:CDS |
| AGGTTTCCAGACCCAATCAC+TGG | 0.561683 | 1_3:+10622459 | Msa0103450:CDS |
| ACTTGTTTAGGTTAATTTGG+AGG | 0.564036 | 1_3:+10624470 | Msa0103450:CDS |
| TAACAGTTGTAGTAGGGGCA+GGG | 0.570383 | 1_3:+10622322 | Msa0103450:CDS |
| ACTGTAAGTGAAAATAGAGA+TGG | 0.570667 | 1_3:-10622418 | None:intergenic |
| CATTTCTTTAGAGATAGAGT+TGG | 0.570900 | 1_3:+10624965 | Msa0103450:three_prime_UTR |
| CACCAAAAGCAGCATAGCCA+AGG | 0.570972 | 1_3:-10624129 | None:intergenic |
| TTACTATGCATACTTCTCCA+AGG | 0.582950 | 1_3:-10624207 | None:intergenic |
| TACTATGCATACTTCTCCAA+GGG | 0.589792 | 1_3:-10624206 | None:intergenic |
| TGAAAAGGGCCAATGTGACA+GGG | 0.592390 | 1_3:+10624068 | Msa0103450:CDS |
| AAGCTAGCTGGGATAACAGT+GGG | 0.592626 | 1_3:+10623043 | Msa0103450:CDS |
| CCTGATATGCTCCAATCATG+TGG | 0.605077 | 1_3:-10624231 | None:intergenic |
| CTCATGATGATATAGATGGA+TGG | 0.611310 | 1_3:-10621215 | None:intergenic |
| TACCCGTGTTATCATTGAGG+TGG | 0.616935 | 1_3:+10624632 | Msa0103450:CDS |
| ACTAGCAACCATTCTTGCCA+TGG | 0.618912 | 1_3:+10624507 | Msa0103450:CDS |
| ACACCACCTCAATGATAACA+CGG | 0.622743 | 1_3:-10624635 | None:intergenic |
| TAACTGCTGCAGAGAAAGTG+TGG | 0.629057 | 1_3:+10623836 | Msa0103450:CDS |
| GCATACCCGTGTTATCATTG+AGG | 0.631382 | 1_3:+10624629 | Msa0103450:CDS |
| ATCATGGAACAAGATGATGA+TGG | 0.632907 | 1_3:+10621373 | Msa0103450:CDS |
| TATCATAACAGTTGTAGTAG+GGG | 0.641841 | 1_3:+10622317 | Msa0103450:CDS |
| AACCTTGGATAAAACGACAA+AGG | 0.644267 | 1_3:-10624908 | None:intergenic |
| TTGGCTAAGAGCAGGAAAAG+GGG | 0.645369 | 1_3:+10623774 | Msa0103450:CDS |
| ACAATAGCATCTTTGTAACA+AGG | 0.649686 | 1_3:+10624768 | Msa0103450:exon |
| ATAACCAAACGAGGTGATAG+CGG | 0.652735 | 1_3:-10623504 | None:intergenic |
| CACCACCTCAATGATAACAC+GGG | 0.666427 | 1_3:-10624634 | None:intergenic |
| AAATGGGTGCTAATATCGCG+TGG | 0.670178 | 1_3:+10624383 | Msa0103450:CDS |
| AGATAAGTACAGTAAGACAA+AGG | 0.671260 | 1_3:-10623544 | None:intergenic |
| GAAAAGGGCCAATGTGACAG+GGG | 0.672165 | 1_3:+10624069 | Msa0103450:CDS |
| TGAGTAAGCCGGTTTATCTG+GGG | 0.673609 | 1_3:-10621289 | None:intergenic |
| AAAGCTAGCTGGGATAACAG+TGG | 0.698440 | 1_3:+10623042 | Msa0103450:CDS |
| AATGAATACATAACCAAACG+AGG | 0.738565 | 1_3:-10623513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTATATTTCATAATTATA+TGG | + | chr1_3:10621495-10621514 | Msa0103450:intron | 10.0% |
| !! | TTATAAATATATGAGAATAA+GGG | - | chr1_3:10624864-10624883 | None:intergenic | 10.0% |
| !! | TTTATAAATATATGAGAATA+AGG | - | chr1_3:10624865-10624884 | None:intergenic | 10.0% |
| !! | ATTCTCATATATTTATAAAA+AGG | + | chr1_3:10624866-10624885 | Msa0103450:three_prime_UTR | 10.0% |
| !! | TTCTCATATATTTATAAAAA+GGG | + | chr1_3:10624867-10624886 | Msa0103450:three_prime_UTR | 10.0% |
| !!! | ATAAAGTAGTTATTTTATCA+CGG | - | chr1_3:10621858-10621877 | None:intergenic | 15.0% |
| !! | TTTCATTTATACTTATTTAG+AGG | - | chr1_3:10622230-10622249 | None:intergenic | 15.0% |
| !! | ATGTTATGATCATTAATATT+TGG | + | chr1_3:10622254-10622273 | Msa0103450:intron | 15.0% |
| !!! | TTATAGTTCTATTTGATAAT+AGG | + | chr1_3:10622980-10622999 | Msa0103450:intron | 15.0% |
| !! | AATAAGATGTATCATAAAAT+TGG | + | chr1_3:10623699-10623718 | Msa0103450:intron | 15.0% |
| !! | TTATATATGTCTAATTACAA+AGG | + | chr1_3:10623747-10623766 | Msa0103450:intron | 15.0% |
| !! | AGAAAATAAACAAATGAAAA+GGG | + | chr1_3:10624054-10624073 | Msa0103450:CDS | 15.0% |
| !! | ATACATAACAATAATTAAAC+TGG | - | chr1_3:10624274-10624293 | None:intergenic | 15.0% |
| !!! | TTGATTTATGAATTTTGAAT+CGG | - | chr1_3:10624410-10624429 | None:intergenic | 15.0% |
| !! | AGATAACTAAATGATATAAG+TGG | + | chr1_3:10621311-10621330 | Msa0103450:five_prime_UTR | 20.0% |
| !! | AATTAAGATAGAAAGGAATA+AGG | - | chr1_3:10621423-10621442 | None:intergenic | 20.0% |
| !! | ATCAAACATGTTATTGATAT+TGG | - | chr1_3:10621638-10621657 | None:intergenic | 20.0% |
| !!! | ATAGTTGCTTTTAAAACTTT+CGG | - | chr1_3:10621947-10621966 | None:intergenic | 20.0% |
| !!! | AAAAAAAACAAAGCATTAGA+CGG | - | chr1_3:10621989-10622008 | None:intergenic | 20.0% |
| !! | TAAGAAATATTGTTAGTAGT+TGG | - | chr1_3:10622860-10622879 | None:intergenic | 20.0% |
| !!! | ATTCCTTAAAGTTTTAAACA+TGG | + | chr1_3:10622921-10622940 | Msa0103450:intron | 20.0% |
| !!! | TTCCTTAAAGTTTTAAACAT+GGG | + | chr1_3:10622922-10622941 | Msa0103450:intron | 20.0% |
| !! | AATGGAAAAATCAAATACAA+GGG | - | chr1_3:10624000-10624019 | None:intergenic | 20.0% |
| !!! | ATTTTTCCATTGTTTTGTTT+AGG | + | chr1_3:10624009-10624028 | Msa0103450:intron | 20.0% |
| !!! | CTTTTCATTTGTTTATTTTC+TGG | - | chr1_3:10624055-10624074 | None:intergenic | 20.0% |
| !! | CAGAAAATAAACAAATGAAA+AGG | + | chr1_3:10624053-10624072 | Msa0103450:CDS | 20.0% |
| !!! | TAATATTTTATTACAGGTCA+TGG | + | chr1_3:10624336-10624355 | Msa0103450:intron | 20.0% |
| !!! | TGATTTATGAATTTTGAATC+GGG | - | chr1_3:10624409-10624428 | None:intergenic | 20.0% |
| ! | TATTACACAAACTCTAATCA+TGG | + | chr1_3:10621357-10621376 | Msa0103450:CDS | 25.0% |
| ! | TTCAGAGAATTAAGATAGAA+AGG | - | chr1_3:10621430-10621449 | None:intergenic | 25.0% |
| ! | AACATGTTATTGATATTGGT+GGG | - | chr1_3:10621634-10621653 | None:intergenic | 25.0% |
| ! | AAACATGTTATTGATATTGG+TGG | - | chr1_3:10621635-10621654 | None:intergenic | 25.0% |
| !!! | CAATAACATGTTTGATTTTG+CGG | + | chr1_3:10621642-10621661 | Msa0103450:intron | 25.0% |
| ! | CAATATTGACACTTCAATAA+TGG | + | chr1_3:10621742-10621761 | Msa0103450:intron | 25.0% |
| !!! | GGACTATTAAATTTTCTAGT+CGG | - | chr1_3:10621808-10621827 | None:intergenic | 25.0% |
| ! | ATTTCTGTTGAGAAATTTGT+TGG | - | chr1_3:10621829-10621848 | None:intergenic | 25.0% |
| !!! | TAGTTGCTTTTAAAACTTTC+GGG | - | chr1_3:10621946-10621965 | None:intergenic | 25.0% |
| !! | TGTTACTGTGTAAATTTTCA+TGG | + | chr1_3:10622034-10622053 | Msa0103450:intron | 25.0% |
| ! | CAAAGATGAAAATTATGCAT+TGG | - | chr1_3:10622168-10622187 | None:intergenic | 25.0% |
| ! | ATATCATAACAGTTGTAGTA+GGG | + | chr1_3:10622316-10622335 | Msa0103450:CDS | 25.0% |
| ! | ATCAATTCTTGAAGAGTAAA+GGG | - | chr1_3:10622682-10622701 | None:intergenic | 25.0% |
| ! | AATATTGTTAGTAGTTGGTT+AGG | - | chr1_3:10622855-10622874 | None:intergenic | 25.0% |
| ! | ATATTCCGTTATAAAAGGAA+GGG | - | chr1_3:10622903-10622922 | None:intergenic | 25.0% |
| ! | AATATTCCGTTATAAAAGGA+AGG | - | chr1_3:10622904-10622923 | None:intergenic | 25.0% |
| ! | AAGGAATATTCCGTTATAAA+AGG | - | chr1_3:10622908-10622927 | None:intergenic | 25.0% |
| !! | AACCCATGTTTAAAACTTTA+AGG | - | chr1_3:10622927-10622946 | None:intergenic | 25.0% |
| !! | TAGTTCTATTTGATAATAGG+TGG | + | chr1_3:10622983-10623002 | Msa0103450:intron | 25.0% |
| !!! | ATTTGTGGATTGATTTTGTA+TGG | + | chr1_3:10623019-10623038 | Msa0103450:CDS | 25.0% |
| !!! | GGTTAGATTAATTTGTAAGT+AGG | + | chr1_3:10623222-10623241 | Msa0103450:intron | 25.0% |
| !! | TCATATTACACTTGTTAGTA+AGG | - | chr1_3:10623329-10623348 | None:intergenic | 25.0% |
| ! | AATCAACTACACAATAAAGT+TGG | - | chr1_3:10623639-10623658 | None:intergenic | 25.0% |
| !!! | AATTTTCTGTATTAGTCTTG+CGG | - | chr1_3:10623667-10623686 | None:intergenic | 25.0% |
| !! | CTATGAATTCGTATTTTCTA+CGG | - | chr1_3:10623725-10623744 | None:intergenic | 25.0% |
| !! | TACTGTTATTTACGACATAA+TGG | + | chr1_3:10623906-10623925 | Msa0103450:CDS | 25.0% |
| ! | CAATGGAAAAATCAAATACA+AGG | - | chr1_3:10624001-10624020 | None:intergenic | 25.0% |
| ! | ATGTATCCTAAACAAAACAA+TGG | - | chr1_3:10624018-10624037 | None:intergenic | 25.0% |
| !!! | TTCATTTGTTTATTTTCTGG+TGG | - | chr1_3:10624052-10624071 | None:intergenic | 25.0% |
| ! | AATCCAAAAAAAATGTTTCC+TGG | - | chr1_3:10624163-10624182 | None:intergenic | 25.0% |
| !! | CAATCAATTTGAACTTGTTT+AGG | + | chr1_3:10624458-10624477 | Msa0103450:CDS | 25.0% |
| !! | TGAACTTGTTTAGGTTAATT+TGG | + | chr1_3:10624467-10624486 | Msa0103450:CDS | 25.0% |
| ! | GCTAGAAATTGATTGAAAAA+TGG | - | chr1_3:10624538-10624557 | None:intergenic | 25.0% |
| ! | TACAAAGACAATTCAAAAGT+TGG | - | chr1_3:10624666-10624685 | None:intergenic | 25.0% |
| !! | ACTTTTGAATTGTCTTTGTA+TGG | + | chr1_3:10624666-10624685 | Msa0103450:CDS | 25.0% |
| !!! | GTTTTATCCAAGGTTTTATT+TGG | + | chr1_3:10624916-10624935 | Msa0103450:three_prime_UTR | 25.0% |
| TACACTCATGATGATATAGA+TGG | - | chr1_3:10621222-10621241 | None:intergenic | 30.0% | |
| !!! | TCTTTCTCTCCTATCTTTTT+TGG | + | chr1_3:10621246-10621265 | Msa0103450:five_prime_UTR | 30.0% |
| ATTTAGTTATCTGAGTAAGC+CGG | - | chr1_3:10621303-10621322 | None:intergenic | 30.0% | |
| TGACTGTGAGTTTACAATAA+TGG | + | chr1_3:10621565-10621584 | Msa0103450:intron | 30.0% | |
| TTCAATAATGGTTAGAGGTT+TGG | + | chr1_3:10621754-10621773 | Msa0103450:intron | 30.0% | |
| !!! | TGGAATTTTGGCTTCAATTT+TGG | - | chr1_3:10621915-10621934 | None:intergenic | 30.0% |
| ! | AAAACTTTCGGGTATTTGTA+TGG | - | chr1_3:10621935-10621954 | None:intergenic | 30.0% |
| CAATCCTGTGAGAAATAAAT+TGG | + | chr1_3:10622134-10622153 | Msa0103450:intron | 30.0% | |
| !! | TGTTCTAAGAGCACATATTA+AGG | - | chr1_3:10622194-10622213 | None:intergenic | 30.0% |
| CATATCATAACAGTTGTAGT+AGG | + | chr1_3:10622315-10622334 | Msa0103450:CDS | 30.0% | |
| TATCATAACAGTTGTAGTAG+GGG | + | chr1_3:10622317-10622336 | Msa0103450:CDS | 30.0% | |
| ACTGTAAGTGAAAATAGAGA+TGG | - | chr1_3:10622421-10622440 | None:intergenic | 30.0% | |
| ! | AATTTCTTTTGCCAGTGATT+GGG | - | chr1_3:10622473-10622492 | None:intergenic | 30.0% |
| ! | TAATTTCTTTTGCCAGTGAT+TGG | - | chr1_3:10622474-10622493 | None:intergenic | 30.0% |
| TCAATTCTTGAAGAGTAAAG+GGG | - | chr1_3:10622681-10622700 | None:intergenic | 30.0% | |
| CATCAATTCTTGAAGAGTAA+AGG | - | chr1_3:10622683-10622702 | None:intergenic | 30.0% | |
| CTTTACTCTTCAAGAATTGA+TGG | + | chr1_3:10622681-10622700 | Msa0103450:intron | 30.0% | |
| TTATAAAAGGAAGGGAAAAG+TGG | - | chr1_3:10622895-10622914 | None:intergenic | 30.0% | |
| ! | CTTTTCCCTTCCTTTTATAA+CGG | + | chr1_3:10622895-10622914 | Msa0103450:intron | 30.0% |
| TCTTATAATCCCTACATGAT+CGG | + | chr1_3:10623410-10623429 | Msa0103450:intron | 30.0% | |
| AATGAATACATAACCAAACG+AGG | - | chr1_3:10623516-10623535 | None:intergenic | 30.0% | |
| AGATAAGTACAGTAAGACAA+AGG | - | chr1_3:10623547-10623566 | None:intergenic | 30.0% | |
| !!! | GTCTAATTACAAAGGCATTT+TGG | + | chr1_3:10623755-10623774 | Msa0103450:intron | 30.0% |
| GCAATTATGTAGTAACAAGT+TGG | + | chr1_3:10623959-10623978 | Msa0103450:intron | 30.0% | |
| !!! | ACACCAGGAAACATTTTTTT+TGG | + | chr1_3:10624157-10624176 | Msa0103450:CDS | 30.0% |
| ! | ACTTGTTTAGGTTAATTTGG+AGG | + | chr1_3:10624470-10624489 | Msa0103450:CDS | 30.0% |
| !! | AATCAATTTCTAGCTCTGTT+GGG | + | chr1_3:10624544-10624563 | Msa0103450:CDS | 30.0% |
| GAGCAATATGCATTTGTATA+GGG | - | chr1_3:10624603-10624622 | None:intergenic | 30.0% | |
| TGAGCAATATGCATTTGTAT+AGG | - | chr1_3:10624604-10624623 | None:intergenic | 30.0% | |
| ACAATAGCATCTTTGTAACA+AGG | + | chr1_3:10624768-10624787 | Msa0103450:exon | 30.0% | |
| ATAGTATATATGTCGAGCTT+AGG | + | chr1_3:10624819-10624838 | Msa0103450:three_prime_UTR | 30.0% | |
| !!! | TTATCCAAGGTTTTATTTGG+TGG | + | chr1_3:10624919-10624938 | Msa0103450:three_prime_UTR | 30.0% |
| !!! | TATCCAAGGTTTTATTTGGT+GGG | + | chr1_3:10624920-10624939 | Msa0103450:three_prime_UTR | 30.0% |
| ! | CATTTCTTTAGAGATAGAGT+TGG | + | chr1_3:10624965-10624984 | Msa0103450:three_prime_UTR | 30.0% |
| CTCATGATGATATAGATGGA+TGG | - | chr1_3:10621218-10621237 | None:intergenic | 35.0% | |
| !! | TATCTGGGGTAGTTATTTTC+CGG | - | chr1_3:10621278-10621297 | None:intergenic | 35.0% |
| AATAACTACCCCAGATAAAC+CGG | + | chr1_3:10621281-10621300 | Msa0103450:five_prime_UTR | 35.0% | |
| ATCATGGAACAAGATGATGA+TGG | + | chr1_3:10621373-10621392 | Msa0103450:CDS | 35.0% | |
| ! | AAGGTACATACCAGTTCTTT+TGG | - | chr1_3:10621404-10621423 | None:intergenic | 35.0% |
| GACACTTCAATAATGGTTAG+AGG | + | chr1_3:10621749-10621768 | Msa0103450:intron | 35.0% | |
| TGGACACTAAAGCAATTTGT+AGG | + | chr1_3:10621774-10621793 | Msa0103450:intron | 35.0% | |
| ! | CGGGTATTTGTATGGAATTT+TGG | - | chr1_3:10621927-10621946 | None:intergenic | 35.0% |
| CAGTAACACACATCATTAGA+TGG | - | chr1_3:10622022-10622041 | None:intergenic | 35.0% | |
| TCATGCTAACTTATGTCCTT+AGG | + | chr1_3:10622057-10622076 | Msa0103450:intron | 35.0% | |
| CATGCTAACTTATGTCCTTA+GGG | + | chr1_3:10622058-10622077 | Msa0103450:intron | 35.0% | |
| AAACCTTAACATGTTCCCTA+AGG | - | chr1_3:10622076-10622095 | None:intergenic | 35.0% | |
| ! | TGTGCCAATTTATTTCTCAC+AGG | - | chr1_3:10622141-10622160 | None:intergenic | 35.0% |
| !! | TATTTGGTGTGCAATATTGC+AGG | + | chr1_3:10622270-10622289 | Msa0103450:intron | 35.0% |
| !! | ATTTGGTGTGCAATATTGCA+GGG | + | chr1_3:10622271-10622290 | Msa0103450:intron | 35.0% |
| ! | CACTAAATTTTTGCCCTGTT+CGG | + | chr1_3:10622565-10622584 | Msa0103450:intron | 35.0% |
| GAAGTGTGCATGTATCAAAA+CGG | - | chr1_3:10622615-10622634 | None:intergenic | 35.0% | |
| !!! | TGAGACATATTTTAGCAACG+AGG | + | chr1_3:10622643-10622662 | Msa0103450:intron | 35.0% |
| !!! | GAGACATATTTTAGCAACGA+GGG | + | chr1_3:10622644-10622663 | Msa0103450:intron | 35.0% |
| TGAGAAAGATGAGCTTACAA+TGG | + | chr1_3:10622769-10622788 | Msa0103450:intron | 35.0% | |
| ! | ATTTTGTATGGAAAGCTAGC+TGG | + | chr1_3:10623031-10623050 | Msa0103450:CDS | 35.0% |
| ! | TTTTGTATGGAAAGCTAGCT+GGG | + | chr1_3:10623032-10623051 | Msa0103450:CDS | 35.0% |
| GTTGTTTGCATCCATAGAAA+AGG | + | chr1_3:10623365-10623384 | Msa0103450:intron | 35.0% | |
| CATGTCAGTTTGTGAAAGTT+GGG | - | chr1_3:10623470-10623489 | None:intergenic | 35.0% | |
| GGTTATGTATTCATTGCAGT+TGG | + | chr1_3:10623521-10623540 | Msa0103450:CDS | 35.0% | |
| TGTCTTACTGTACTTATCTC+AGG | + | chr1_3:10623548-10623567 | Msa0103450:intron | 35.0% | |
| ! | CACAATAAAGTTGGTTGTAG+AGG | - | chr1_3:10623630-10623649 | None:intergenic | 35.0% |
| AAAAAATGTTTCCTGGTGTG+TGG | - | chr1_3:10624156-10624175 | None:intergenic | 35.0% | |
| ! | TTGGATTTTATGAGCCCTAT+TGG | + | chr1_3:10624176-10624195 | Msa0103450:CDS | 35.0% |
| TACTATGCATACTTCTCCAA+GGG | - | chr1_3:10624209-10624228 | None:intergenic | 35.0% | |
| TTACTATGCATACTTCTCCA+AGG | - | chr1_3:10624210-10624229 | None:intergenic | 35.0% | |
| TGCATAGTAATCCACATGAT+TGG | + | chr1_3:10624220-10624239 | Msa0103450:CDS | 35.0% | |
| ATTTCAACGACGCGAAAAAA+TGG | - | chr1_3:10624367-10624386 | None:intergenic | 35.0% | |
| !!! | ATTTTTTCGCGTCGTTGAAA+TGG | + | chr1_3:10624366-10624385 | Msa0103450:CDS | 35.0% |
| !!! | TTTTTTCGCGTCGTTGAAAT+GGG | + | chr1_3:10624367-10624386 | Msa0103450:CDS | 35.0% |
| ATTGAAAAATGGCATTGCCA+TGG | - | chr1_3:10624527-10624546 | None:intergenic | 35.0% | |
| !! | CAATCAATTTCTAGCTCTGT+TGG | + | chr1_3:10624543-10624562 | Msa0103450:CDS | 35.0% |
| ATAGGGAAGAAGACAACTAA+TGG | - | chr1_3:10624586-10624605 | None:intergenic | 35.0% | |
| TCTTTGTATGGTTGTCACAT+TGG | + | chr1_3:10624678-10624697 | Msa0103450:CDS | 35.0% | |
| !!! | TTCCTTTGTCGTTTTATCCA+AGG | + | chr1_3:10624906-10624925 | Msa0103450:three_prime_UTR | 35.0% |
| AACCTTGGATAAAACGACAA+AGG | - | chr1_3:10624911-10624930 | None:intergenic | 35.0% | |
| AATCCCACCAAATAAAACCT+TGG | - | chr1_3:10624926-10624945 | None:intergenic | 35.0% | |
| !!! | CTATCTTTTTTGGCAGTCAC+CGG | + | chr1_3:10621256-10621275 | Msa0103450:five_prime_UTR | 40.0% |
| GATGGTAAAGCCAAAAGAAC+TGG | + | chr1_3:10621391-10621410 | Msa0103450:CDS | 40.0% | |
| TGTCCTTAGGGAACATGTTA+AGG | + | chr1_3:10622070-10622089 | Msa0103450:intron | 40.0% | |
| GCAATATTGCAGGGAATGTA+TGG | + | chr1_3:10622280-10622299 | Msa0103450:intron | 40.0% | |
| GTCTTGTAGCTGATTGCTAT+AGG | + | chr1_3:10622439-10622458 | Msa0103450:CDS | 40.0% | |
| CGAACAGGGCAAAAATTTAG+TGG | - | chr1_3:10622567-10622586 | None:intergenic | 40.0% | |
| ! | CAGCTTCAAGTCCTTTTCTA+TGG | - | chr1_3:10623379-10623398 | None:intergenic | 40.0% |
| !! | AATCCCTACATGATCGGTTT+TGG | + | chr1_3:10623416-10623435 | Msa0103450:intron | 40.0% |
| !! | ATCCCTACATGATCGGTTTT+GGG | + | chr1_3:10623417-10623436 | Msa0103450:intron | 40.0% |
| ATCCCAAAACCGATCATGTA+GGG | - | chr1_3:10623422-10623441 | None:intergenic | 40.0% | |
| TATCCCAAAACCGATCATGT+AGG | - | chr1_3:10623423-10623442 | None:intergenic | 40.0% | |
| CCATGTCAGTTTGTGAAAGT+TGG | - | chr1_3:10623471-10623490 | None:intergenic | 40.0% | |
| CCAACTTTCACAAACTGACA+TGG | + | chr1_3:10623468-10623487 | Msa0103450:CDS | 40.0% | |
| ATAACCAAACGAGGTGATAG+CGG | - | chr1_3:10623507-10623526 | None:intergenic | 40.0% | |
| !! | TTTTGGCTAAGAGCAGGAAA+AGG | + | chr1_3:10623772-10623791 | Msa0103450:CDS | 40.0% |
| TTTGGCTAAGAGCAGGAAAA+GGG | + | chr1_3:10623773-10623792 | Msa0103450:CDS | 40.0% | |
| AGCATAACCGGAACACAAAT+AGG | + | chr1_3:10623805-10623824 | Msa0103450:CDS | 40.0% | |
| GCATAACCGGAACACAAATA+GGG | + | chr1_3:10623806-10623825 | Msa0103450:CDS | 40.0% | |
| TTCCTACTATGTAGTTGCCT+TGG | + | chr1_3:10624112-10624131 | Msa0103450:CDS | 40.0% | |
| ATGATTGGAGCATATCAGGT+TGG | + | chr1_3:10624235-10624254 | Msa0103450:intron | 40.0% | |
| ACACCACCTCAATGATAACA+CGG | - | chr1_3:10624638-10624657 | None:intergenic | 40.0% | |
| CGGTGACTGCCAAAAAAGAT+AGG | - | chr1_3:10621258-10621277 | None:intergenic | 45.0% | |
| ! | TGAGTAAGCCGGTTTATCTG+GGG | - | chr1_3:10621292-10621311 | None:intergenic | 45.0% |
| ! | CTGAGTAAGCCGGTTTATCT+GGG | - | chr1_3:10621293-10621312 | None:intergenic | 45.0% |
| ! | TCTGAGTAAGCCGGTTTATC+TGG | - | chr1_3:10621294-10621313 | None:intergenic | 45.0% |
| ATAACAGTTGTAGTAGGGGC+AGG | + | chr1_3:10622321-10622340 | Msa0103450:CDS | 45.0% | |
| TAACAGTTGTAGTAGGGGCA+GGG | + | chr1_3:10622322-10622341 | Msa0103450:CDS | 45.0% | |
| ACCAGCTATCCATCCTAGTT+GGG | - | chr1_3:10622373-10622392 | None:intergenic | 45.0% | |
| TACCAGCTATCCATCCTAGT+TGG | - | chr1_3:10622374-10622393 | None:intergenic | 45.0% | |
| CTAGGATGGATAGCTGGTAT+AGG | + | chr1_3:10622375-10622394 | Msa0103450:CDS | 45.0% | |
| CAAGCTGTCAAGAGCTACTT+AGG | + | chr1_3:10622504-10622523 | Msa0103450:CDS | 45.0% | |
| TAACAGCAGACATCCGAACA+GGG | - | chr1_3:10622581-10622600 | None:intergenic | 45.0% | |
| !! | ATTTTAGCAACGAGGGTGAG+CGG | + | chr1_3:10622651-10622670 | Msa0103450:intron | 45.0% |
| TGGTTAGGACAGTTTCTCAC+TGG | - | chr1_3:10622840-10622859 | None:intergenic | 45.0% | |
| GGAACGATGCAAGTGATTTG+TGG | + | chr1_3:10623004-10623023 | Msa0103450:CDS | 45.0% | |
| AAAGCTAGCTGGGATAACAG+TGG | + | chr1_3:10623042-10623061 | Msa0103450:CDS | 45.0% | |
| AAGCTAGCTGGGATAACAGT+GGG | + | chr1_3:10623043-10623062 | Msa0103450:CDS | 45.0% | |
| !!! | AAGGCATTTTGGCTAAGAGC+AGG | + | chr1_3:10623766-10623785 | Msa0103450:intron | 45.0% |
| TTGGCTAAGAGCAGGAAAAG+GGG | + | chr1_3:10623774-10623793 | Msa0103450:CDS | 45.0% | |
| TTCTGGCCCTATTTGTGTTC+CGG | - | chr1_3:10623815-10623834 | None:intergenic | 45.0% | |
| TTCTCTGCAGCAGTTAGTTC+TGG | - | chr1_3:10623832-10623851 | None:intergenic | 45.0% | |
| TAACTGCTGCAGAGAAAGTG+TGG | + | chr1_3:10623836-10623855 | Msa0103450:CDS | 45.0% | |
| TGGCGTGTTTGCACTTCAAT+GGG | + | chr1_3:10623856-10623875 | Msa0103450:CDS | 45.0% | |
| ATGAAAAGGGCCAATGTGAC+AGG | + | chr1_3:10624067-10624086 | Msa0103450:CDS | 45.0% | |
| TGAAAAGGGCCAATGTGACA+GGG | + | chr1_3:10624068-10624087 | Msa0103450:CDS | 45.0% | |
| CATTGATACCCCTGTCACAT+TGG | - | chr1_3:10624080-10624099 | None:intergenic | 45.0% | |
| AGCCAAGGCAACTACATAGT+AGG | - | chr1_3:10624117-10624136 | None:intergenic | 45.0% | |
| CCAAGGGCTACTATCCAATA+GGG | - | chr1_3:10624193-10624212 | None:intergenic | 45.0% | |
| TCCAAGGGCTACTATCCAAT+AGG | - | chr1_3:10624194-10624213 | None:intergenic | 45.0% | |
| CCTGATATGCTCCAATCATG+TGG | - | chr1_3:10624234-10624253 | None:intergenic | 45.0% | |
| CCACATGATTGGAGCATATC+AGG | + | chr1_3:10624231-10624250 | Msa0103450:CDS | 45.0% | |
| AAATGGGTGCTAATATCGCG+TGG | + | chr1_3:10624383-10624402 | Msa0103450:CDS | 45.0% | |
| GACCATTCATTTAACGTGCG+TGG | + | chr1_3:10624430-10624449 | Msa0103450:CDS | 45.0% | |
| CACCACGCACGTTAAATGAA+TGG | - | chr1_3:10624435-10624454 | None:intergenic | 45.0% | |
| ACTAGCAACCATTCTTGCCA+TGG | + | chr1_3:10624507-10624526 | Msa0103450:CDS | 45.0% | |
| TGTTGGGAGCGATTGGATTT+GGG | + | chr1_3:10624560-10624579 | Msa0103450:CDS | 45.0% | |
| GCATACCCGTGTTATCATTG+AGG | + | chr1_3:10624629-10624648 | Msa0103450:CDS | 45.0% | |
| TACCCGTGTTATCATTGAGG+TGG | + | chr1_3:10624632-10624651 | Msa0103450:CDS | 45.0% | |
| CACCACCTCAATGATAACAC+GGG | - | chr1_3:10624637-10624656 | None:intergenic | 45.0% | |
| !! | ATAAAATAAAAATATTTGAT+TGG | + | chr1_3:10621185-10621204 | Msa0103450:five_prime_UTR | 5.0% |
| !! | ATAAATAAATAAATAAATCA+TGG | + | chr1_3:10623201-10623220 | Msa0103450:intron | 5.0% |
| !!! | ATAATTTAATATTTTATTAC+AGG | + | chr1_3:10624330-10624349 | Msa0103450:intron | 5.0% |
| AACAGTTGTAGTAGGGGCAG+GGG | + | chr1_3:10622323-10622342 | Msa0103450:CDS | 50.0% | |
| TATCCATCCTAGTTGGGCCA+TGG | - | chr1_3:10622367-10622386 | None:intergenic | 50.0% | |
| AGGTTTCCAGACCCAATCAC+TGG | + | chr1_3:10622459-10622478 | Msa0103450:CDS | 50.0% | |
| ! | CTTTTGCCAGTGATTGGGTC+TGG | - | chr1_3:10622468-10622487 | None:intergenic | 50.0% |
| CTAACAGCAGACATCCGAAC+AGG | - | chr1_3:10622582-10622601 | None:intergenic | 50.0% | |
| !! | AAACGAGGTGATAGCGGCAA+TGG | - | chr1_3:10623501-10623520 | None:intergenic | 50.0% |
| ATTGCCGCTATCACCTCGTT+TGG | + | chr1_3:10623500-10623519 | Msa0103450:CDS | 50.0% | |
| ! | GGGGCATCTACTAGCATAAC+CGG | + | chr1_3:10623793-10623812 | Msa0103450:CDS | 50.0% |
| GTGGCGTGTTTGCACTTCAA+TGG | + | chr1_3:10623855-10623874 | Msa0103450:CDS | 50.0% | |
| GAAAAGGGCCAATGTGACAG+GGG | + | chr1_3:10624069-10624088 | Msa0103450:CDS | 50.0% | |
| !!! | TGCCTTGGCTATGCTGCTTT+TGG | + | chr1_3:10624127-10624146 | Msa0103450:CDS | 50.0% |
| CACCAAAAGCAGCATAGCCA+AGG | - | chr1_3:10624132-10624151 | None:intergenic | 50.0% | |
| CCCTATTGGATAGTAGCCCT+TGG | + | chr1_3:10624190-10624209 | Msa0103450:CDS | 50.0% | |
| TGGCATTGCCATGGCAAGAA+TGG | - | chr1_3:10624518-10624537 | None:intergenic | 50.0% | |
| CTGTTGGGAGCGATTGGATT+TGG | + | chr1_3:10624559-10624578 | Msa0103450:CDS | 50.0% | |
| ! | TTGGTGGGCAGAGCAGATGA+AGG | - | chr1_3:10621619-10621638 | None:intergenic | 55.0% |
| !! | AGGGGTGTTGGCTCTAGCAT+GGG | + | chr1_3:10622341-10622360 | Msa0103450:CDS | 55.0% |
| GCCCAACTAGGATGGATAGC+TGG | + | chr1_3:10622369-10622388 | Msa0103450:CDS | 55.0% | |
| !! | GCTTTTGGTGACCACACACC+AGG | + | chr1_3:10624142-10624161 | Msa0103450:CDS | 55.0% |
| !! | CTAGCTCTGTTGGGAGCGAT+TGG | + | chr1_3:10624553-10624572 | Msa0103450:CDS | 55.0% |
| ! | GGTTGTCACATTGGCTGCTG+TGG | + | chr1_3:10624687-10624706 | Msa0103450:CDS | 55.0% |
| ! | TGTAGTAGGGGCAGGGGTGT+TGG | + | chr1_3:10622329-10622348 | Msa0103450:CDS | 60.0% |
| !! | CAGGGGTGTTGGCTCTAGCA+TGG | + | chr1_3:10622340-10622359 | Msa0103450:CDS | 60.0% |
| !! | GTTGGCTCTAGCATGGGCCA+TGG | + | chr1_3:10622347-10622366 | Msa0103450:CDS | 60.0% |
| GCATGGGCCATGGCCCAACT+AGG | + | chr1_3:10622357-10622376 | Msa0103450:CDS | 65.0% | |
| GGGCCATGGCCCAACTAGGA+TGG | + | chr1_3:10622361-10622380 | Msa0103450:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 10621143 | 10625026 | 10621143 | ID=Msa0103450;Name=Msa0103450 |
| chr1_3 | mRNA | 10621143 | 10625026 | 10621143 | ID=Msa0103450-mRNA-1;Parent=Msa0103450;Name=Msa0103450-mRNA-1;_AED=0.23;_eAED=0.23;_QI=209|0.66|0.57|1|1|1|7|252|438 |
| chr1_3 | exon | 10621143 | 10621412 | 10621143 | ID=Msa0103450-mRNA-1:exon:4407;Parent=Msa0103450-mRNA-1 |
| chr1_3 | exon | 10622292 | 10622525 | 10622292 | ID=Msa0103450-mRNA-1:exon:4408;Parent=Msa0103450-mRNA-1 |
| chr1_3 | exon | 10622986 | 10623095 | 10622986 | ID=Msa0103450-mRNA-1:exon:4409;Parent=Msa0103450-mRNA-1 |
| chr1_3 | exon | 10623449 | 10623556 | 10623449 | ID=Msa0103450-mRNA-1:exon:4410;Parent=Msa0103450-mRNA-1 |
| chr1_3 | exon | 10623769 | 10623927 | 10623769 | ID=Msa0103450-mRNA-1:exon:4411;Parent=Msa0103450-mRNA-1 |
| chr1_3 | exon | 10624031 | 10624252 | 10624031 | ID=Msa0103450-mRNA-1:exon:4412;Parent=Msa0103450-mRNA-1 |
| chr1_3 | exon | 10624352 | 10625026 | 10624352 | ID=Msa0103450-mRNA-1:exon:4413;Parent=Msa0103450-mRNA-1 |
| chr1_3 | five_prime_UTR | 10621143 | 10621351 | 10621143 | ID=Msa0103450-mRNA-1:five_prime_utr;Parent=Msa0103450-mRNA-1 |
| chr1_3 | CDS | 10621352 | 10621412 | 10621352 | ID=Msa0103450-mRNA-1:cds;Parent=Msa0103450-mRNA-1 |
| chr1_3 | CDS | 10622292 | 10622525 | 10622292 | ID=Msa0103450-mRNA-1:cds;Parent=Msa0103450-mRNA-1 |
| chr1_3 | CDS | 10622986 | 10623095 | 10622986 | ID=Msa0103450-mRNA-1:cds;Parent=Msa0103450-mRNA-1 |
| chr1_3 | CDS | 10623449 | 10623556 | 10623449 | ID=Msa0103450-mRNA-1:cds;Parent=Msa0103450-mRNA-1 |
| chr1_3 | CDS | 10623769 | 10623927 | 10623769 | ID=Msa0103450-mRNA-1:cds;Parent=Msa0103450-mRNA-1 |
| chr1_3 | CDS | 10624031 | 10624252 | 10624031 | ID=Msa0103450-mRNA-1:cds;Parent=Msa0103450-mRNA-1 |
| chr1_3 | CDS | 10624352 | 10624774 | 10624352 | ID=Msa0103450-mRNA-1:cds;Parent=Msa0103450-mRNA-1 |
| chr1_3 | three_prime_UTR | 10624775 | 10625026 | 10624775 | ID=Msa0103450-mRNA-1:three_prime_utr;Parent=Msa0103450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
