AlfalfaGEDB | Msa0106650

M. sativa cultivar zhongmu-4 / Msa0106650

KEGG: K00895
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008443 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0015979 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0034284 GO:0034285 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0047334 GO:0050896 GO:0071704 GO:1901700
PFAM: PF00365.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0106650	XP_024633584.2	95.156	640	7	1	1	640	1	616	0.0	1248

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0106650	sp\|Q41140\|PFPA_RICCO	84.069	634	77	1	1	634	1	610	0.0	1113

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0106650	A0A396JLW5	95.156	640	7	1	1	640	1	616	0.0	1248

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0106650	Msa0239760	0.804176	2.449550e-49	-8.615850e-47
Msa0106650	Msa0625080	0.819449	1.154533e-52	-8.615850e-47
Msa0106650	Msa0677570	-0.821162	4.675461e-53	-8.615850e-47
Msa0106650	Msa1144990	0.806045	9.951916e-50	-8.615850e-47
Msa0106650	Msa1395320	0.806748	7.076518e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0106650	MtrunA17_Chr1g0162751	95.156	640	7	1	1	640	1	616	0.0	1248
Msa0106650	MtrunA17_Chr2g0289271	39.965	573	303	8	12	582	27	560	2.18e-132	400
Msa0106650	MtrunA17_Chr4g0075371	38.636	572	312	6	12	582	31	564	8.40e-129	391

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0106650	AT1G20950.1	79.154	638	107	2	1	636	1	614	0.0	1048
Msa0106650	AT1G76550.1	78.947	627	108	1	1	627	1	603	0.0	1045
Msa0106650	AT4G04040.1	39.633	545	291	6	40	582	56	564	3.83e-130	395
Msa0106650	AT1G12000.1	39.580	571	307	8	12	582	30	562	1.18e-128	391
Msa0106650	AT5G56630.1	25.660	265	174	7	67	327	75	320	5.64e-14	75.1

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Find 161 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCACTTGAAGACAAGG+AGG	0.693947	1_3:-16221510	None:intergenic
AAAGATTGCTGATGCAGTTC+AGG	0.395394	1_3:+16223943	Msa0106650:CDS
AAAGCAGCTTTGAGCGTCAT+GGG	0.481351	1_3:+16226415	Msa0106650:CDS
AAAGCCAGGGTGTCCTCAAG+AGG	0.643003	1_3:+16226387	Msa0106650:CDS
AAAGGTTGTCCATAGGTATT+AGG	0.237212	1_3:-16221975	None:intergenic
AAATGCGACAAGCTTTCTTA+TGG	0.298663	1_3:+16225782	Msa0106650:CDS
AACCGATTATATACCTTTGT+AGG	0.411307	1_3:-16223168	None:intergenic
AACTCACTTGAAGACAAGGA+GGG	0.661691	1_3:-16221509	None:intergenic
AAGCAGCTTTGAGCGTCATG+GGG	0.695413	1_3:+16226416	Msa0106650:CDS
AAGCGTTGGTCTCCTAATCC+TGG	0.494473	1_3:+16225236	Msa0106650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGATACTATGTTCTACTA+TGG	-	chr1_3:16221398-16221417	None:intergenic	30.0%
AATACCATAATCAGAATCCA+TGG	-	chr1_3:16221436-16221455	None:intergenic	30.0%
GGTGATGAATTTGAATGTAA+TGG	+	chr1_3:16221719-16221738	Msa0106650:intron	30.0%
GTGATGAATTTGGATGTAAT+GGG	+	chr1_3:16221843-16221862	Msa0106650:intron	30.0%
TGATGAATTTGGATGTAATG+GGG	+	chr1_3:16221844-16221863	Msa0106650:intron	30.0%
GATAAACTAACCTAATAGGA+GGG	-	chr1_3:16222058-16222077	None:intergenic	30.0%
AGATAAACTAACCTAATAGG+AGG	-	chr1_3:16222059-16222078	None:intergenic	30.0%
AATCCAAGCAAAACATTCTT+AGG	-	chr1_3:16222267-16222286	None:intergenic	30.0%
AAAACTATGTATGCTTGGAT+TGG	+	chr1_3:16222392-16222411	Msa0106650:intron	30.0%
TGTTATTATCATACGATCGA+TGG	+	chr1_3:16222873-16222892	Msa0106650:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	16221202	16226853	16221202	ID=Msa0106650;Name=Msa0106650
chr1_3	mRNA	16221202	16226853	16221202	ID=Msa0106650-mRNA-1;Parent=Msa0106650;Name=Msa0106650-mRNA-1;_AED=0.10;_eAED=0.10;_QI=233\|0.94\|0.94\|1\|1\|1\|18\|355\|640
chr1_3	exon	16221202	16221524	16221202	ID=Msa0106650-mRNA-1:exon:6154;Parent=Msa0106650-mRNA-1
chr1_3	exon	16221894	16222066	16221894	ID=Msa0106650-mRNA-1:exon:6155;Parent=Msa0106650-mRNA-1
chr1_3	exon	16222179	16222291	16222179	ID=Msa0106650-mRNA-1:exon:6156;Parent=Msa0106650-mRNA-1
chr1_3	exon	16222730	16222804	16222730	ID=Msa0106650-mRNA-1:exon:6157;Parent=Msa0106650-mRNA-1
chr1_3	exon	16222910	16223023	16222910	ID=Msa0106650-mRNA-1:exon:6158;Parent=Msa0106650-mRNA-1
chr1_3	exon	16223109	16223176	16223109	ID=Msa0106650-mRNA-1:exon:6159;Parent=Msa0106650-mRNA-1
chr1_3	exon	16223344	16223427	16223344	ID=Msa0106650-mRNA-1:exon:6160;Parent=Msa0106650-mRNA-1
chr1_3	exon	16223577	16223630	16223577	ID=Msa0106650-mRNA-1:exon:6161;Parent=Msa0106650-mRNA-1
chr1_3	exon	16223717	16223797	16223717	ID=Msa0106650-mRNA-1:exon:6162;Parent=Msa0106650-mRNA-1
chr1_3	exon	16223887	16223980	16223887	ID=Msa0106650-mRNA-1:exon:6163;Parent=Msa0106650-mRNA-1
chr1_3	exon	16224090	16224163	16224090	ID=Msa0106650-mRNA-1:exon:6164;Parent=Msa0106650-mRNA-1
chr1_3	exon	16224264	16224446	16224264	ID=Msa0106650-mRNA-1:exon:6165;Parent=Msa0106650-mRNA-1
chr1_3	exon	16224578	16224622	16224578	ID=Msa0106650-mRNA-1:exon:6166;Parent=Msa0106650-mRNA-1
chr1_3	exon	16224716	16224877	16224716	ID=Msa0106650-mRNA-1:exon:6167;Parent=Msa0106650-mRNA-1
chr1_3	exon	16224965	16225081	16224965	ID=Msa0106650-mRNA-1:exon:6168;Parent=Msa0106650-mRNA-1
chr1_3	exon	16225221	16225324	16225221	ID=Msa0106650-mRNA-1:exon:6169;Parent=Msa0106650-mRNA-1
chr1_3	exon	16225770	16225935	16225770	ID=Msa0106650-mRNA-1:exon:6170;Parent=Msa0106650-mRNA-1
chr1_3	exon	16226373	16226853	16226373	ID=Msa0106650-mRNA-1:exon:6171;Parent=Msa0106650-mRNA-1
chr1_3	five_prime_UTR	16221202	16221434	16221202	ID=Msa0106650-mRNA-1:five_prime_utr;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16221435	16221524	16221435	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16221894	16222066	16221894	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16222179	16222291	16222179	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16222730	16222804	16222730	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16222910	16223023	16222910	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16223109	16223176	16223109	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16223344	16223427	16223344	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16223577	16223630	16223577	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16223717	16223797	16223717	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16223887	16223980	16223887	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16224090	16224163	16224090	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16224264	16224446	16224264	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16224578	16224622	16224578	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16224716	16224877	16224716	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16224965	16225081	16224965	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16225221	16225324	16225221	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16225770	16225935	16225770	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	CDS	16226373	16226498	16226373	ID=Msa0106650-mRNA-1:cds;Parent=Msa0106650-mRNA-1
chr1_3	three_prime_UTR	16226499	16226853	16226499	ID=Msa0106650-mRNA-1:three_prime_utr;Parent=Msa0106650-mRNA-1

Gene Sequence

>Msa0106650

ATGGATTCTGATTATGGTATTCCCAGAGAACTCTCAGATCTTCAAAAGCTTAGATCTTTATACCAACCTGAACTCCCTCCTTGTCTTCAAGGAACAACTGTTAGGGTTGAATTTGGTGATGGAACAACAAGTGCTGATCCAGCTGATGAGCCTACTATAAGTAGATCTTTCCCTAATACCTATGGACAACCTTTGGCTCATTTTCTTAGGGCTACTGCTAAAGTTCCTGATGCTCAGATCATAACTGAGCACCCTCCTATTAGGGTTGGAATTGTTTTTTCTGGAAGACAATCTCCTGGTGGACACAATGTTATTTGGGGTCTTCACTCTGCTCTCAAGATTCACAATCCTAAGAATGTTTTGCTTGGATTTCTTGGTGGGTCAGAAGGTCTATTTTCGCAGAAAACTTTGGAGATAACTGACGATATTCTCTCCACATACAAAAATCAAGGTGGTTATGATTTGCTTGGGCGGACGAAAGATCAAATTAGGACCACTGAACAAGTTAATGCTGCTCTTGCTACATGCAACAATTTGAAACTTGATGGCCTTGTCATCATTGGAGGTGTGACATCAAACACAGATGCTGCGCAGCTTGCAGAAACATTTGCTGTTGCAAAATGCCCTACAAAGGTGGTTGGTGTTCCTGTGACTTTGAATGGAGATCTTAAAAACCAGTTTGTGGAAACAAATGTTGGCTTTGACACAATTTCTAAGGTGAATTCCCAGCTCATCAGCAATGTCTGCACTGATGCTCTCTCTGCAGAGAAGTATTATTATTTCATTCGTCTTATGGGACGCAAGGCATCACATGTTGCATTGGAATGCACTCTTCAGTCCCATCCAAACATGGTAATTCTTGGTGAGGAGGTTGCTCAATCAAAGCTTACCCTCTTTGAAATTTCACGAAAGATTGCTGATGCAGTTCAGGCTAGATCAGAACAAGACAAATATCATGGAGTAATCCTTATTCCAGAGGGTCTAATTGAGAGCATTCCTGAAGTGTATGCACTTTTGAAGTTGATTGTTTCTTATGAATATGGTAAAGAATGCAATCTTAATCCATTCTTGGAAAAACCTTTTGCATCTCAGGAAATTCACGTTTTACTCAGACAAGGTGTTGATGGTGAGAAGATAGCTAGTCAGCTTTCACCATGGGCTTCTGCTTTATTTGAATTTCTACCACCATTTATTAGGAGACAGCTTCTACTTTATCCTGAATCAGATGACTCAGCACAGTTGTCTCAGATTGAGACTGAGAAACTTCTAGCTTACCTTGTGGAAGTAGAGATAAACAAGCGCCAGAAAGAAGGAACATACAAGGGAAAGAAATTCAATGCGATTTGCCACTTTTTTGGATATCAAGCTCGAGGATCCCTTCCATCAAAGTTTGACTGTGACTATGCATATGTTCTTGGATACATCTGCTACCATATACTAGCTGCTGGTTTGAATGGATACCTGGCAACTGTAACTAACTTGAAGAATCCTGTAAACAAGTGGAAATGTGGTGCTGCTCCAATTTCAGCTATGATGACGGTGAAGCGTTGGTCTCCTAATCCTGGAGCCACATCAATCGGAAAACCTGCCATCCATCCAGCTACTGTGGATTTGAGAGGCAAAGCATATGAGCTGTTGCGTCAAAATGCGACAAGCTTTCTTATGGACGATATTTATAGAAATCCAGGCCCGCTTCAGTTTGATGGTCCTGGTGCAGATGCCAAGCCTATCACTCTTAATGTCGAAGACCAAGACTACATGGGTCGCATCAAGAGACTTCAGGAGTACCTTGAACAGGTACGAACCATTGTAAAGCCAGGGTGTCCTCAAGAGGTTCTGAAAGCAGCTTTGAGCGTCATGGGGTCCGTTACCGAAGTTCTAACCGCCATGTCATCATCTTCCGGCAACACTTCATCCCTCTGA

Protein sequence

>Msa0106650

MDSDYGIPRELSDLQKLRSLYQPELPPCLQGTTVRVEFGDGTTSADPADEPTISRSFPNTYGQPLAHFLRATAKVPDAQIITEHPPIRVGIVFSGRQSPGGHNVIWGLHSALKIHNPKNVLLGFLGGSEGLFSQKTLEITDDILSTYKNQGGYDLLGRTKDQIRTTEQVNAALATCNNLKLDGLVIIGGVTSNTDAAQLAETFAVAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTISKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAQSKLTLFEISRKIADAVQARSEQDKYHGVILIPEGLIESIPEVYALLKLIVSYEYGKECNLNPFLEKPFASQEIHVLLRQGVDGEKIASQLSPWASALFEFLPPFIRRQLLLYPESDDSAQLSQIETEKLLAYLVEVEINKRQKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGYICYHILAAGLNGYLATVTNLKNPVNKWKCGAAPISAMMTVKRWSPNPGATSIGKPAIHPATVDLRGKAYELLRQNATSFLMDDIYRNPGPLQFDGPGADAKPITLNVEDQDYMGRIKRLQEYLEQVRTIVKPGCPQEVLKAALSVMGSVTEVLTAMSSSSGNTSSL*