AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1395320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395320 MtrunA17_Chr2g0290791 96.685 181 5 1 1 181 1 180 1.93e-126 354
Msa1395320 MtrunA17_Chr8g0338791 40.426 94 54 1 85 178 22 113 8.60e-20 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395320 AT5G09920.1 44.681 94 50 1 85 178 22 113 2.07e-23 91.3

Find 53 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTCCTCCCATCATTAA+AGG 0.176774 tig0021939:+91198 Msa1395320:CDS
AAAACTTCATCAGCAGTTTC+TGG 0.183875 tig0021939:-91175 None:intergenic
TTTGTTAGTCTTGTGCTATT+AGG 0.308093 tig0021939:+92136 Msa1395320:three_prime_UTR
GAACAACCTTGACTTCCTTT+TGG 0.318581 tig0021939:+88337 Msa1395320:five_prime_UTR
GACAGATTTCAACTGCAAAA+TGG 0.344401 tig0021939:-92247 None:intergenic
ATTGTCAAAACTTCCTCTTT+AGG 0.349140 tig0021939:-88544 None:intergenic
GATGATATATCATCCCTTAC+AGG 0.399184 tig0021939:-92225 None:intergenic
AGAAGTTGGACCGTTTGATC+TGG 0.404517 tig0021939:-89881 None:intergenic
GGTGAAACTTGGTGCCTGTA+AGG 0.411242 tig0021939:+92211 Msa1395320:three_prime_UTR
AGAAAACTTCAAATGCTTGA+TGG 0.417461 tig0021939:+90591 Msa1395320:CDS
AGATCAAACGGTCCAACTTC+TGG 0.429487 tig0021939:+89883 Msa1395320:CDS
AAACTTCATCAGCAGTTTCT+GGG 0.430453 tig0021939:-91174 None:intergenic
GTGAGATCATGATTCATTAG+AGG 0.436951 tig0021939:-91040 None:intergenic
CAAGGGGACAAGGTTGCAAA+TGG 0.437247 tig0021939:+90064 Msa1395320:intron
ACAAGGAATTCAAGATCAAA+TGG 0.440815 tig0021939:+90636 Msa1395320:CDS
CTATGTCACACCTTTAATGA+TGG 0.461467 tig0021939:-91208 None:intergenic
TTACCTTTGCCACCAGAAGT+TGG 0.488935 tig0021939:-89895 None:intergenic
TTTGAACATAGAGTTGATCA+AGG 0.491629 tig0021939:+90121 Msa1395320:CDS
TTACTTCTAGCTCTCCTAAA+CGG 0.512435 tig0021939:-92027 None:intergenic
TATAATGGTAGGAGGGCTGA+AGG 0.514957 tig0021939:+89648 Msa1395320:intron
ATGACAACAAAGGTGAAACT+TGG 0.539094 tig0021939:+92200 Msa1395320:three_prime_UTR
TAATGGTAGGAGGGCTGAAG+GGG 0.541753 tig0021939:+89650 Msa1395320:intron
CTGCTGTAGATCATTTGACA+AGG 0.542544 tig0021939:+90808 Msa1395320:intron
CTCTATGTTCAAATTGATGT+GGG 0.543180 tig0021939:-90111 None:intergenic
ATAATGGTAGGAGGGCTGAA+GGG 0.548492 tig0021939:+89649 Msa1395320:intron
GGTCCAACTTCTGGTGGCAA+AGG 0.550582 tig0021939:+89892 Msa1395320:CDS
CAAGGTTGTTCAGTGAGCGC+AGG 0.551712 tig0021939:-88325 None:intergenic
ACTCTATGTTCAAATTGATG+TGG 0.554604 tig0021939:-90112 None:intergenic
CTATTTGAATCCAGATCAAA+CGG 0.555560 tig0021939:+89871 Msa1395320:CDS
TACTCACCAAAAGGAAGTCA+AGG 0.562526 tig0021939:-88343 None:intergenic
ATGTCTGACAAAGGAGGAAA+GGG 0.564051 tig0021939:+88565 Msa1395320:CDS
TGCTGTAGATCATTTGACAA+GGG 0.566891 tig0021939:+90809 Msa1395320:intron
GGTGGTTCTCTGTTGAGTAA+AGG 0.577797 tig0021939:+88586 Msa1395320:CDS
AGAGCTAGAAGTAATCGCTC+TGG 0.579901 tig0021939:+92036 Msa1395320:CDS
TATGTCACACCTTTAATGAT+GGG 0.581612 tig0021939:-91207 None:intergenic
GGGGACAAGGTTGCAAATGG+TGG 0.585394 tig0021939:+90067 Msa1395320:intron
AATGTCTGACAAAGGAGGAA+AGG 0.587565 tig0021939:+88564 Msa1395320:exon
AGAGCGTGTCTAACAGACTC+GGG 0.590587 tig0021939:-90875 None:intergenic
GAAGCTGCATCTATGTTACA+AGG 0.601243 tig0021939:+90619 Msa1395320:CDS
TTGACAATGTCTGACAAAGG+AGG 0.605901 tig0021939:+88559 Msa1395320:exon
CAACAAAATCAGCAAAGGCA+AGG 0.607041 tig0021939:+89686 Msa1395320:CDS
TAAGACCGATACCTCGCTCT+CGG 0.612121 tig0021939:-91062 None:intergenic
GCTGTAGATCATTTGACAAG+GGG 0.616908 tig0021939:+90810 Msa1395320:intron
AAGAGCGTGTCTAACAGACT+CGG 0.617302 tig0021939:-90876 None:intergenic
GTGAAACTTGGTGCCTGTAA+GGG 0.617735 tig0021939:+92212 Msa1395320:three_prime_UTR
GGTTCTCTGTTGAGTAAAGG+TGG 0.620441 tig0021939:+88589 Msa1395320:CDS
GTCACACCTTTAATGATGGG+AGG 0.638044 tig0021939:-91204 None:intergenic
TCATGATCTCACCGAGAGCG+AGG 0.639418 tig0021939:+91051 Msa1395320:CDS
TAGTGCAACAAAATCAGCAA+AGG 0.649091 tig0021939:+89681 Msa1395320:CDS
GGATGTACATTGCTCTAACG+TGG 0.651319 tig0021939:+92157 Msa1395320:three_prime_UTR
AATCTTATATATGACAACAA+AGG 0.660283 tig0021939:+92190 Msa1395320:three_prime_UTR
TCTGACAAAGGAGGAAAGGG+TGG 0.670458 tig0021939:+88568 Msa1395320:CDS
TCAAACGGTCCAACTTCTGG+TGG 0.687189 tig0021939:+89886 Msa1395320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAATTATTA+GGG + tig0021939:88679-88698 Msa1395320:intron 0.0%
!!! ATATTTTGAAATAATTTCTA+GGG - tig0021939:88983-89002 None:intergenic 10.0%
!!! AATATTTTGAAATAATTTCT+AGG - tig0021939:88984-89003 None:intergenic 10.0%
!!! TTATTAGTTTCTTTTTATAT+TGG - tig0021939:91636-91655 None:intergenic 10.0%
!! AATAAATCAAAGACATAAAA+AGG - tig0021939:89170-89189 None:intergenic 15.0%
!! AATTGTAATTTATTTGTCAA+TGG - tig0021939:91322-91341 None:intergenic 15.0%
!!! AAATTGAAACTTTTGATGAA+GGG - tig0021939:88635-88654 None:intergenic 20.0%
!!! AAAATTGAAACTTTTGATGA+AGG - tig0021939:88636-88655 None:intergenic 20.0%
!!! TTTTTCACTTTTTTCTGTTT+TGG + tig0021939:88655-88674 Msa1395320:intron 20.0%
!!! TTTTCACTTTTTTCTGTTTT+GGG + tig0021939:88656-88675 Msa1395320:intron 20.0%
!!! ATTTAGTTTACTTATGATGT+TGG + tig0021939:88740-88759 Msa1395320:intron 20.0%
!!! TTTAGTTTACTTATGATGTT+GGG + tig0021939:88741-88760 Msa1395320:intron 20.0%
!! TTATTGAATGTAATATGTGT+TGG + tig0021939:88887-88906 Msa1395320:intron 20.0%
!! AAAGACAAAAACTTGAAATT+TGG + tig0021939:89029-89048 Msa1395320:intron 20.0%
!! AAGACAAAAACTTGAAATTT+GGG + tig0021939:89030-89049 Msa1395320:intron 20.0%
!!! ACACTTGATTGTTTTTATAA+TGG + tig0021939:89633-89652 Msa1395320:intron 20.0%
!!! TTGATTGTTTTTATAATGGT+AGG + tig0021939:89637-89656 Msa1395320:intron 20.0%
!!! TTTTTTTCCTTCAATTTTCA+AGG + tig0021939:90046-90065 Msa1395320:intron 20.0%
!!! TTTTTTCCTTCAATTTTCAA+GGG + tig0021939:90047-90066 Msa1395320:intron 20.0%
!! TATGGTTTACATAAATTCAA+AGG - tig0021939:90186-90205 None:intergenic 20.0%
!! TTAAGGTTTGATATTAAAGT+AGG + tig0021939:90746-90765 Msa1395320:intron 20.0%
!! AGAAAATAAAGAAGAAAGTT+AGG - tig0021939:90790-90809 None:intergenic 20.0%
!! CTACATAATACGTTAAAAAA+AGG - tig0021939:91104-91123 None:intergenic 20.0%
!! AAATAAAACAATATGCCAAT+AGG + tig0021939:91771-91790 Msa1395320:intron 20.0%
!!! CTTTAGTCTGAATTTTATAT+TGG + tig0021939:92104-92123 Msa1395320:three_prime_UTR 20.0%
!! AATCTTATATATGACAACAA+AGG + tig0021939:92190-92209 Msa1395320:three_prime_UTR 20.0%
! AAACAACCTAAATGATCAAA+AGG - tig0021939:88485-88504 None:intergenic 25.0%
!! TTTTTGTTAGATTGTTCTGT+TGG + tig0021939:88709-88728 Msa1395320:intron 25.0%
!! TTTTGTTAGATTGTTCTGTT+GGG + tig0021939:88710-88729 Msa1395320:intron 25.0%
!!! ACAACACTTAGTTTTTACTA+GGG - tig0021939:88956-88975 None:intergenic 25.0%
!!! AACAACACTTAGTTTTTACT+AGG - tig0021939:88957-88976 None:intergenic 25.0%
!! TAGTAAAAACTAAGTGTTGT+TGG + tig0021939:88956-88975 Msa1395320:intron 25.0%
! AAGCAACATATGAAAATCAA+AGG - tig0021939:89195-89214 None:intergenic 25.0%
!!! TTTGATTTTCATATGTTGCT+TGG + tig0021939:89194-89213 Msa1395320:intron 25.0%
! ACTTAAGTAATTAAAGCGAA+GGG - tig0021939:89240-89259 None:intergenic 25.0%
! ATCCTATCTAACTTATATGT+GGG + tig0021939:89538-89557 Msa1395320:intron 25.0%
!!! ATTGTTTTTATAATGGTAGG+AGG + tig0021939:89640-89659 Msa1395320:intron 25.0%
!!! TTGTTTTTATAATGGTAGGA+GGG + tig0021939:89641-89660 Msa1395320:intron 25.0%
! AGAATTATAATGCTAACCTT+CGG - tig0021939:89725-89744 None:intergenic 25.0%
! ATTATTGCTTGGTTGTATAT+AGG + tig0021939:89847-89866 Msa1395320:intron 25.0%
! AATTGAAGGAAAAAAAGTTC+AGG - tig0021939:90042-90061 None:intergenic 25.0%
!!! TTTTTCCTTCAATTTTCAAG+GGG + tig0021939:90048-90067 Msa1395320:intron 25.0%
!!! TATCAATTGCTTTTCATAAG+AGG - tig0021939:90251-90270 None:intergenic 25.0%
!!! CTTTATCTCTCTTTTTAAGT+AGG + tig0021939:90283-90302 Msa1395320:intron 25.0%
!!! TATTAATTTGTTCCTCTATG+TGG + tig0021939:90452-90471 Msa1395320:intron 25.0%
! TATCAATAAGAGATAACTTC+AGG - tig0021939:90523-90542 None:intergenic 25.0%
! TATCAGTAATGTTATCTCTT+TGG + tig0021939:90547-90566 Msa1395320:intron 25.0%
! ATCAGTAATGTTATCTCTTT+GGG + tig0021939:90548-90567 Msa1395320:intron 25.0%
! TCTCTATTGAAAATAATGCA+TGG + tig0021939:90718-90737 Msa1395320:intron 25.0%
! CTCTATTGAAAATAATGCAT+GGG + tig0021939:90719-90738 Msa1395320:intron 25.0%
!! AATAATGCATGGGATTTTTA+AGG + tig0021939:90729-90748 Msa1395320:intron 25.0%
! CTATGGATAAATGACAATAT+TGG + tig0021939:90953-90972 Msa1395320:intron 25.0%
! AAAAAAAGGAAGTTAGTAGT+TGG - tig0021939:91090-91109 None:intergenic 25.0%
! CTGAAAATGTCTTTATAAGT+GGG + tig0021939:91403-91422 Msa1395320:intron 25.0%
! TATCATCTTAAAATTTGGGT+TGG - tig0021939:91473-91492 None:intergenic 25.0%
! GCTCTATCATCTTAAAATTT+GGG - tig0021939:91477-91496 None:intergenic 25.0%
! AAACTAATAACATTCATAGC+TGG + tig0021939:91646-91665 Msa1395320:intron 25.0%
!!! CTAATTTCTTCATTGGTTTT+TGG + tig0021939:91716-91735 Msa1395320:intron 25.0%
! AATAGATACATACTATGAGA+TGG - tig0021939:91803-91822 None:intergenic 25.0%
! TTACATTAGCTGTTTAAACT+TGG - tig0021939:91882-91901 None:intergenic 25.0%
! ATGTAACTAAAACCATACAA+TGG + tig0021939:91896-91915 Msa1395320:intron 25.0%
!! TAGTCTGAATTTTATATTGG+CGG + tig0021939:92107-92126 Msa1395320:three_prime_UTR 25.0%
! AAAGGACAAGTATTGTTCAA+GGG - tig0021939:88467-88486 None:intergenic 30.0%
! AAAAGGACAAGTATTGTTCA+AGG - tig0021939:88468-88487 None:intergenic 30.0%
! ACTTGTCCTTTTGATCATTT+AGG + tig0021939:88476-88495 Msa1395320:intron 30.0%
ATTGTCAAAACTTCCTCTTT+AGG - tig0021939:88547-88566 None:intergenic 30.0%
! TGAGTAAAGGTGGTAATTTT+TGG + tig0021939:88599-88618 Msa1395320:intron 30.0%
TTATGATGTTGGGAAATTCT+GGG + tig0021939:88751-88770 Msa1395320:intron 30.0%
ATACTTGTACATAGACACTA+TGG + tig0021939:88839-88858 Msa1395320:intron 30.0%
CAATACAAAGTCTCAATTGA+GGG - tig0021939:89056-89075 None:intergenic 30.0%
ACAATACAAAGTCTCAATTG+AGG - tig0021939:89057-89076 None:intergenic 30.0%
CAATTGAGACTTTGTATTGT+CGG + tig0021939:89057-89076 Msa1395320:intron 30.0%
! ATGACTTTGATCTGAAATGT+TGG + tig0021939:89125-89144 Msa1395320:intron 30.0%
CTTAAGTAATTAAAGCGAAG+GGG - tig0021939:89239-89258 None:intergenic 30.0%
CACTTAAGTAATTAAAGCGA+AGG - tig0021939:89241-89260 None:intergenic 30.0%
ATCATACATGCATAACTACA+CGG - tig0021939:89348-89367 None:intergenic 30.0%
GTCTGAGAATTAGTGTTTAT+GGG + tig0021939:89439-89458 Msa1395320:intron 30.0%
TCTGAGAATTAGTGTTTATG+GGG + tig0021939:89440-89459 Msa1395320:intron 30.0%
ATTAGTGTTTATGGGGTAAA+AGG + tig0021939:89447-89466 Msa1395320:intron 30.0%
TTAGTGTTTATGGGGTAAAA+GGG + tig0021939:89448-89467 Msa1395320:intron 30.0%
GATCCTATCTAACTTATATG+TGG + tig0021939:89537-89556 Msa1395320:intron 30.0%
AACCCACATATAAGTTAGAT+AGG - tig0021939:89543-89562 None:intergenic 30.0%
TACAACCAAGCAATAATTTC+AGG - tig0021939:89844-89863 None:intergenic 30.0%
CTATTTGAATCCAGATCAAA+CGG + tig0021939:89871-89890 Msa1395320:CDS 30.0%
CTCTATGTTCAAATTGATGT+GGG - tig0021939:90114-90133 None:intergenic 30.0%
ACTCTATGTTCAAATTGATG+TGG - tig0021939:90115-90134 None:intergenic 30.0%
! TTTGAACATAGAGTTGATCA+AGG + tig0021939:90121-90140 Msa1395320:CDS 30.0%
AACCACAATAACATTCGATA+AGG + tig0021939:90329-90348 Msa1395320:intron 30.0%
ACCACAATAACATTCGATAA+GGG + tig0021939:90330-90349 Msa1395320:intron 30.0%
AAAATTATTTACCGCCTCAT+TGG + tig0021939:90362-90381 Msa1395320:intron 30.0%
ATGTTGTGATTTAGGCATTT+AGG + tig0021939:90482-90501 Msa1395320:intron 30.0%
!! ATCAAGCATTTGAAGTTTTC+TGG - tig0021939:90592-90611 None:intergenic 30.0%
AGAAAACTTCAAATGCTTGA+TGG + tig0021939:90591-90610 Msa1395320:CDS 30.0%
ACAAGGAATTCAAGATCAAA+TGG + tig0021939:90636-90655 Msa1395320:CDS 30.0%
CACAGCAAACTGAAAAATTA+AGG - tig0021939:90908-90927 None:intergenic 30.0%
TATGTCACACCTTTAATGAT+GGG - tig0021939:91210-91229 None:intergenic 30.0%
GTAATACGCAACAAACTATT+TGG - tig0021939:91348-91367 None:intergenic 30.0%
! CCACTTATAAAGACATTTTC+AGG - tig0021939:91405-91424 None:intergenic 30.0%
CCTGAAAATGTCTTTATAAG+TGG + tig0021939:91402-91421 Msa1395320:intron 30.0%
AAAATGTCTTTATAAGTGGG+AGG + tig0021939:91406-91425 Msa1395320:intron 30.0%
GGCTCTATCATCTTAAAATT+TGG - tig0021939:91478-91497 None:intergenic 30.0%
AAAACTGAATTGTAAGGTGA+TGG - tig0021939:91596-91615 None:intergenic 30.0%
CCTTACAAAACTGAATTGTA+AGG - tig0021939:91602-91621 None:intergenic 30.0%
!! CCTTACAATTCAGTTTTGTA+AGG + tig0021939:91599-91618 Msa1395320:intron 30.0%
AATAACATTCATAGCTGGAT+TGG + tig0021939:91651-91670 Msa1395320:intron 30.0%
GTTTGCTCTAATTTCTTCAT+TGG + tig0021939:91709-91728 Msa1395320:intron 30.0%
!! AGGTTATTTTCTTGACAAGA+GGG - tig0021939:91745-91764 None:intergenic 30.0%
!! TAGGTTATTTTCTTGACAAG+AGG - tig0021939:91746-91765 None:intergenic 30.0%
TATCTATTTCAGAGTAAGAG+AGG + tig0021939:91815-91834 Msa1395320:intron 30.0%
ACTAAAACCATACAATGGAA+AGG + tig0021939:91901-91920 Msa1395320:intron 30.0%
!! TTTGTTAGTCTTGTGCTATT+AGG + tig0021939:92136-92155 Msa1395320:three_prime_UTR 30.0%
TTAAGGAAGAACAGGAAGAT+GGG - tig0021939:88370-88389 None:intergenic 35.0%
ATTAAGGAAGAACAGGAAGA+TGG - tig0021939:88371-88390 None:intergenic 35.0%
ATGAGACATGCATGGAATTA+AGG - tig0021939:88387-88406 None:intergenic 35.0%
! GAAATTTTGCAGACCTAAAG+AGG + tig0021939:88531-88550 Msa1395320:intron 35.0%
!! GTTTTGACAATGTCTGACAA+AGG + tig0021939:88556-88575 Msa1395320:exon 35.0%
CTTATGATGTTGGGAAATTC+TGG + tig0021939:88750-88769 Msa1395320:intron 35.0%
TTTCAGATCAAAGTCATGTC+TGG - tig0021939:89122-89141 None:intergenic 35.0%
TCATACATGCATAACTACAC+GGG - tig0021939:89347-89366 None:intergenic 35.0%
GGTCTGAGAATTAGTGTTTA+TGG + tig0021939:89438-89457 Msa1395320:intron 35.0%
CAAGTGTTCAAATCACCAAA+TGG - tig0021939:89620-89639 None:intergenic 35.0%
TAGTGCAACAAAATCAGCAA+AGG + tig0021939:89681-89700 Msa1395320:CDS 35.0%
CCAAGCAATAATTTCAGGAA+GGG - tig0021939:89839-89858 None:intergenic 35.0%
ACCAAGCAATAATTTCAGGA+AGG - tig0021939:89840-89859 None:intergenic 35.0%
! AACATAGAGTTGATCAAGGT+TGG + tig0021939:90125-90144 Msa1395320:intron 35.0%
CCTTAAACGTCAGACAATAT+GGG - tig0021939:90218-90237 None:intergenic 35.0%
ACCTTAAACGTCAGACAATA+TGG - tig0021939:90219-90238 None:intergenic 35.0%
ACCCTTATCGAATGTTATTG+TGG - tig0021939:90334-90353 None:intergenic 35.0%
! AAGAGATAACTTCAGGTTTC+AGG - tig0021939:90516-90535 None:intergenic 35.0%
AGTAATGTTATCTCTTTGGG+TGG + tig0021939:90551-90570 Msa1395320:intron 35.0%
TGCTGTAGATCATTTGACAA+GGG + tig0021939:90809-90828 Msa1395320:intron 35.0%
GTCAAGGGATCATCTTTATA+GGG - tig0021939:91008-91027 None:intergenic 35.0%
AGTCAAGGGATCATCTTTAT+AGG - tig0021939:91009-91028 None:intergenic 35.0%
GATCCCTTGACTCAAATATT+AGG + tig0021939:91017-91036 Msa1395320:intron 35.0%
AGGCCTAATATTTGAGTCAA+GGG - tig0021939:91023-91042 None:intergenic 35.0%
GTGAGATCATGATTCATTAG+AGG - tig0021939:91043-91062 None:intergenic 35.0%
AAACTTCATCAGCAGTTTCT+GGG - tig0021939:91177-91196 None:intergenic 35.0%
AAAACTTCATCAGCAGTTTC+TGG - tig0021939:91178-91197 None:intergenic 35.0%
CTATGTCACACCTTTAATGA+TGG - tig0021939:91211-91230 None:intergenic 35.0%
! CCACTTATACACACATTTTC+AGG - tig0021939:91566-91585 None:intergenic 35.0%
CCTGAAAATGTGTGTATAAG+TGG + tig0021939:91563-91582 Msa1395320:intron 35.0%
ATGAGATGGTAACATCCTAT+TGG - tig0021939:91789-91808 None:intergenic 35.0%
! GTATTGAAGGTGTAAAGGAA+AGG - tig0021939:91968-91987 None:intergenic 35.0%
! AGACAGTATTGAAGGTGTAA+AGG - tig0021939:91973-91992 None:intergenic 35.0%
!! TTACTTCTAGCTCTCCTAAA+CGG - tig0021939:92030-92049 None:intergenic 35.0%
ATGACAACAAAGGTGAAACT+TGG + tig0021939:92200-92219 Msa1395320:three_prime_UTR 35.0%
GATGATATATCATCCCTTAC+AGG - tig0021939:92228-92247 None:intergenic 35.0%
GACAGATTTCAACTGCAAAA+TGG - tig0021939:92250-92269 None:intergenic 35.0%
! GAACAACCTTGACTTCCTTT+TGG + tig0021939:88337-88356 Msa1395320:five_prime_UTR 40.0%
TACTCACCAAAAGGAAGTCA+AGG - tig0021939:88346-88365 None:intergenic 40.0%
!! AAGATGGGTTACTCACCAAA+AGG - tig0021939:88355-88374 None:intergenic 40.0%
GCATGGAATTAAGGAAGAAC+AGG - tig0021939:88378-88397 None:intergenic 40.0%
!! CGATTTTGATGAGACATGCA+TGG - tig0021939:88395-88414 None:intergenic 40.0%
TTGACAATGTCTGACAAAGG+AGG + tig0021939:88559-88578 Msa1395320:exon 40.0%
AATGTCTGACAAAGGAGGAA+AGG + tig0021939:88564-88583 Msa1395320:exon 40.0%
ATGTCTGACAAAGGAGGAAA+GGG + tig0021939:88565-88584 Msa1395320:CDS 40.0%
! AATCTATGAAGCTCTGACAC+CGG + tig0021939:88805-88824 Msa1395320:intron 40.0%
!! TGTGTTGGTGTCAAACACTT+TGG + tig0021939:88902-88921 Msa1395320:intron 40.0%
TGTTTACACAGCTCATTAGC+CGG + tig0021939:89082-89101 Msa1395320:intron 40.0%
AAGGGGAAAAACTAAGCTGT+AGG - tig0021939:89222-89241 None:intergenic 40.0%
ACATATCTCAGCGAGAACAA+CGG - tig0021939:89384-89403 None:intergenic 40.0%
TGTTCTCGCTGAGATATGTA+AGG + tig0021939:89385-89404 Msa1395320:intron 40.0%
GTTCTCGCTGAGATATGTAA+GGG + tig0021939:89386-89405 Msa1395320:intron 40.0%
TTCTCGCTGAGATATGTAAG+GGG + tig0021939:89387-89406 Msa1395320:intron 40.0%
TCCATCAATCAGTAGCACAT+TGG + tig0021939:89577-89596 Msa1395320:intron 40.0%
CCATCAATCAGTAGCACATT+GGG + tig0021939:89578-89597 Msa1395320:intron 40.0%
CATCAATCAGTAGCACATTG+GGG + tig0021939:89579-89598 Msa1395320:intron 40.0%
!! TGCCAATGTTTTGGACCATT+TGG + tig0021939:89602-89621 Msa1395320:intron 40.0%
CACCAAATGGTCCAAAACAT+TGG - tig0021939:89607-89626 None:intergenic 40.0%
CAACAAAATCAGCAAAGGCA+AGG + tig0021939:89686-89705 Msa1395320:CDS 40.0%
! AGGAAAGTTCAGTTTTCCGA+AGG + tig0021939:89706-89725 Msa1395320:CDS 40.0%
ATCTTTGTACTTCTGCTCAG+TGG + tig0021939:89748-89767 Msa1395320:intron 40.0%
CCCTTCCTGAAATTATTGCT+TGG + tig0021939:89836-89855 Msa1395320:intron 40.0%
GTCATTGCCAAAGTTATTGC+TGG + tig0021939:89922-89941 Msa1395320:intron 40.0%
GATTGAGCCAGCAATAACTT+TGG - tig0021939:89932-89951 None:intergenic 40.0%
CTTGTCCCCTTGAAAATTGA+AGG - tig0021939:90056-90075 None:intergenic 40.0%
!! CTTCAATTTTCAAGGGGACA+AGG + tig0021939:90054-90073 Msa1395320:intron 40.0%
TAAACGTCAGACAATATGGG+CGG - tig0021939:90215-90234 None:intergenic 40.0%
CCCATATTGTCTGACGTTTA+AGG + tig0021939:90215-90234 Msa1395320:intron 40.0%
! TTGTCTGACGTTTAAGGTTG+TGG + tig0021939:90221-90240 Msa1395320:intron 40.0%
! GTTTTACATCTCCAATGAGG+CGG - tig0021939:90376-90395 None:intergenic 40.0%
!! GTCGTTTTACATCTCCAATG+AGG - tig0021939:90379-90398 None:intergenic 40.0%
GCTAAAACGTCATACAGTAC+AGG + tig0021939:90414-90433 Msa1395320:intron 40.0%
AAACGTCATACAGTACAGGA+TGG + tig0021939:90418-90437 Msa1395320:intron 40.0%
GACGACTCATGTTGTGATTT+AGG + tig0021939:90474-90493 Msa1395320:intron 40.0%
GAAGCTGCATCTATGTTACA+AGG + tig0021939:90619-90638 Msa1395320:CDS 40.0%
CTGCTGTAGATCATTTGACA+AGG + tig0021939:90808-90827 Msa1395320:intron 40.0%
GCTGTAGATCATTTGACAAG+GGG + tig0021939:90810-90829 Msa1395320:intron 40.0%
CTTTGTACATCTGTGTGCTA+TGG + tig0021939:90936-90955 Msa1395320:intron 40.0%
GAGGCCTAATATTTGAGTCA+AGG - tig0021939:91024-91043 None:intergenic 40.0%
!! GTGTGACATAGAGCATTTTG+TGG + tig0021939:91220-91239 Msa1395320:intron 40.0%
TCAATGCTTCTTCAACAGGT+TGG - tig0021939:91850-91869 None:intergenic 40.0%
CAGTGAACCTTTCCATTGTA+TGG - tig0021939:91911-91930 None:intergenic 40.0%
CATACAATGGAAAGGTTCAC+TGG + tig0021939:91909-91928 Msa1395320:intron 40.0%
CACCTTCAATACTGTCTGAT+TGG + tig0021939:91976-91995 Msa1395320:intron 40.0%
! AGCCAATCAGACAGTATTGA+AGG - tig0021939:91981-92000 None:intergenic 40.0%
! TGTGTGCAGTTTTACCGTTT+AGG + tig0021939:92013-92032 Msa1395320:intron 40.0%
GGTGGTTCTCTGTTGAGTAA+AGG + tig0021939:88586-88605 Msa1395320:CDS 45.0%
GGTTCTCTGTTGAGTAAAGG+TGG + tig0021939:88589-88608 Msa1395320:CDS 45.0%
ACAAGTATCTGTGTCGTGTC+CGG - tig0021939:88827-88846 None:intergenic 45.0%
CCTTGATCACAGCACATTGT+CGG - tig0021939:89420-89439 None:intergenic 45.0%
! TATGTGGGTTGTGTTCATCC+TGG + tig0021939:89553-89572 Msa1395320:intron 45.0%
! TGCTACTGATTGATGGAACC+AGG - tig0021939:89574-89593 None:intergenic 45.0%
! CCCAATGTGCTACTGATTGA+TGG - tig0021939:89581-89600 None:intergenic 45.0%
!! ACATTGGGGTGCCAATGTTT+TGG + tig0021939:89593-89612 Msa1395320:intron 45.0%
TATAATGGTAGGAGGGCTGA+AGG + tig0021939:89648-89667 Msa1395320:intron 45.0%
ATAATGGTAGGAGGGCTGAA+GGG + tig0021939:89649-89668 Msa1395320:intron 45.0%
AGAAGTTGGACCGTTTGATC+TGG - tig0021939:89884-89903 None:intergenic 45.0%
AGATCAAACGGTCCAACTTC+TGG + tig0021939:89883-89902 Msa1395320:CDS 45.0%
TTACCTTTGCCACCAGAAGT+TGG - tig0021939:89898-89917 None:intergenic 45.0%
!! TATTGCTGGCTCAATCGCTT+TGG + tig0021939:89936-89955 Msa1395320:intron 45.0%
GTCATACAGTACAGGATGGA+GGG + tig0021939:90422-90441 Msa1395320:intron 45.0%
AACATGAGTCGTCCACATAG+AGG - tig0021939:90467-90486 None:intergenic 45.0%
!! TACGCGGGCATTTTGATAGA+TGG - tig0021939:90679-90698 None:intergenic 45.0%
TCTATCAAAATGCCCGCGTA+AGG + tig0021939:90679-90698 Msa1395320:intron 45.0%
CTATCAAAATGCCCGCGTAA+GGG + tig0021939:90680-90699 Msa1395320:intron 45.0%
! AAGAGCGTGTCTAACAGACT+CGG - tig0021939:90879-90898 None:intergenic 45.0%
GCAATCACACATATCTGCAG+AGG - tig0021939:91145-91164 None:intergenic 45.0%
TGCTCTCCTCCCATCATTAA+AGG + tig0021939:91198-91217 Msa1395320:CDS 45.0%
! GTCACACCTTTAATGATGGG+AGG - tig0021939:91207-91226 None:intergenic 45.0%
! GAGGTATCCCTTACCTTACA+AGG + tig0021939:91425-91444 Msa1395320:intron 45.0%
GTATCCCTTACCTTACAAGG+CGG + tig0021939:91428-91447 Msa1395320:intron 45.0%
ACAACCGCCTTGTAAGGTAA+GGG - tig0021939:91435-91454 None:intergenic 45.0%
TACAACCGCCTTGTAAGGTA+AGG - tig0021939:91436-91455 None:intergenic 45.0%
TTACCTTACAAGGCGGTTGT+AGG + tig0021939:91435-91454 Msa1395320:intron 45.0%
AATCCTACAACCGCCTTGTA+AGG - tig0021939:91441-91460 None:intergenic 45.0%
AGAGCCTATCCCACATTTGT+TGG + tig0021939:91492-91511 Msa1395320:intron 45.0%
TCGCTCAATGCTTCTTCAAC+AGG - tig0021939:91854-91873 None:intergenic 45.0%
AGAGCTAGAAGTAATCGCTC+TGG + tig0021939:92036-92055 Msa1395320:CDS 45.0%
GGATGTACATTGCTCTAACG+TGG + tig0021939:92157-92176 Msa1395320:three_prime_UTR 45.0%
!! GTGAAACTTGGTGCCTGTAA+GGG + tig0021939:92212-92231 Msa1395320:three_prime_UTR 45.0%
!! GTAAAAAAAAAAAAATTATT+AGG + tig0021939:88678-88697 Msa1395320:intron 5.0%
!!! ATATTGTTTTATTTTTTATT+AGG - tig0021939:91765-91784 None:intergenic 5.0%
TCTGACAAAGGAGGAAAGGG+TGG + tig0021939:88568-88587 Msa1395320:CDS 50.0%
CATGTCTGGTGTTTGACACC+AGG - tig0021939:89108-89127 None:intergenic 50.0%
ATCACAGCACATTGTCGGCA+AGG - tig0021939:89415-89434 None:intergenic 50.0%
CCGACAATGTGCTGTGATCA+AGG + tig0021939:89417-89436 Msa1395320:intron 50.0%
TAATGGTAGGAGGGCTGAAG+GGG + tig0021939:89650-89669 Msa1395320:intron 50.0%
TCAAACGGTCCAACTTCTGG+TGG + tig0021939:89886-89905 Msa1395320:CDS 50.0%
CAAGGGGACAAGGTTGCAAA+TGG + tig0021939:90064-90083 Msa1395320:intron 50.0%
CGTCATACAGTACAGGATGG+AGG + tig0021939:90421-90440 Msa1395320:intron 50.0%
ATCTCAGTGTCTCCCTTACG+CGG - tig0021939:90695-90714 None:intergenic 50.0%
AGAGCGTGTCTAACAGACTC+GGG - tig0021939:90878-90897 None:intergenic 50.0%
TAAGACCGATACCTCGCTCT+CGG - tig0021939:91065-91084 None:intergenic 50.0%
AGGGCCAACAAATGTGGGAT+AGG - tig0021939:91499-91518 None:intergenic 50.0%
! TATCCCACATTTGTTGGCCC+TGG + tig0021939:91498-91517 Msa1395320:intron 50.0%
! ATCCCACATTTGTTGGCCCT+GGG + tig0021939:91499-91518 Msa1395320:intron 50.0%
!! GGTGAAACTTGGTGCCTGTA+AGG + tig0021939:92211-92230 Msa1395320:three_prime_UTR 50.0%
CAAGGTTGTTCAGTGAGCGC+AGG - tig0021939:88328-88347 None:intergenic 55.0%
TCTGGTGTTTGACACCAGGC+CGG - tig0021939:89104-89123 None:intergenic 55.0%
GGTCCAACTTCTGGTGGCAA+AGG + tig0021939:89892-89911 Msa1395320:CDS 55.0%
GGGGACAAGGTTGCAAATGG+TGG + tig0021939:90067-90086 Msa1395320:intron 55.0%
CAATATGGGCGGAGGGAGTA+TGG - tig0021939:90204-90223 None:intergenic 55.0%
CGTCAGACAATATGGGCGGA+GGG - tig0021939:90211-90230 None:intergenic 55.0%
ACGTCAGACAATATGGGCGG+AGG - tig0021939:90212-90231 None:intergenic 55.0%
TCTCAGTGTCTCCCTTACGC+GGG - tig0021939:90694-90713 None:intergenic 55.0%
!!! CTTGCTGCTGCTGCTGCTTT+TGG - tig0021939:90846-90865 None:intergenic 55.0%
TCATGATCTCACCGAGAGCG+AGG + tig0021939:91051-91070 Msa1395320:CDS 55.0%
TCTCACCGAGAGCGAGGTAT+CGG + tig0021939:91057-91076 Msa1395320:intron 55.0%
CTAATATCCCCTCACGCCCA+GGG - tig0021939:91518-91537 None:intergenic 55.0%
ACACAGCTCATTAGCCGGCC+TGG + tig0021939:89087-89106 Msa1395320:intron 60.0%
CGCCCAGGGCCAACAAATGT+GGG - tig0021939:91504-91523 None:intergenic 60.0%
ACGCCCAGGGCCAACAAATG+TGG - tig0021939:91505-91524 None:intergenic 60.0%
! ATTTGTTGGCCCTGGGCGTG+AGG + tig0021939:91506-91525 Msa1395320:intron 60.0%
TTTGTTGGCCCTGGGCGTGA+GGG + tig0021939:91507-91526 Msa1395320:intron 60.0%
CCTAATATCCCCTCACGCCC+AGG - tig0021939:91519-91538 None:intergenic 60.0%
CCTGGGCGTGAGGGGATATT+AGG + tig0021939:91516-91535 Msa1395320:intron 60.0%
TTGTTGGCCCTGGGCGTGAG+GGG + tig0021939:91508-91527 Msa1395320:intron 65.0%
Chromosome Type Strat End Strand Name
tig0021939 gene 88282 92274 88282 ID=Msa1395320;Name=Msa1395320
tig0021939 mRNA 88282 92274 88282 ID=Msa1395320-mRNA-1;Parent=Msa1395320;Name=Msa1395320-mRNA-1;_AED=0.19;_eAED=0.19;_QI=99|0.77|0.9|1|0.88|0.8|10|178|202
tig0021939 exon 88282 88358 88282 ID=Msa1395320-mRNA-1:exon:14820;Parent=Msa1395320-mRNA-1
tig0021939 exon 88543 88610 88543 ID=Msa1395320-mRNA-1:exon:14821;Parent=Msa1395320-mRNA-1
tig0021939 exon 89659 89727 89659 ID=Msa1395320-mRNA-1:exon:14822;Parent=Msa1395320-mRNA-1
tig0021939 exon 89869 89913 89869 ID=Msa1395320-mRNA-1:exon:14823;Parent=Msa1395320-mRNA-1
tig0021939 exon 90068 90142 90068 ID=Msa1395320-mRNA-1:exon:14824;Parent=Msa1395320-mRNA-1
tig0021939 exon 90584 90695 90584 ID=Msa1395320-mRNA-1:exon:14825;Parent=Msa1395320-mRNA-1
tig0021939 exon 90817 90900 90817 ID=Msa1395320-mRNA-1:exon:14826;Parent=Msa1395320-mRNA-1
tig0021939 exon 91039 91072 91039 ID=Msa1395320-mRNA-1:exon:14827;Parent=Msa1395320-mRNA-1
tig0021939 exon 91151 91219 91151 ID=Msa1395320-mRNA-1:exon:14828;Parent=Msa1395320-mRNA-1
tig0021939 exon 92022 92274 92022 ID=Msa1395320-mRNA-1:exon:14829;Parent=Msa1395320-mRNA-1
tig0021939 five_prime_UTR 88282 88358 88282 ID=Msa1395320-mRNA-1:five_prime_utr;Parent=Msa1395320-mRNA-1
tig0021939 five_prime_UTR 88543 88564 88543 ID=Msa1395320-mRNA-1:five_prime_utr;Parent=Msa1395320-mRNA-1
tig0021939 CDS 88565 88610 88565 ID=Msa1395320-mRNA-1:cds;Parent=Msa1395320-mRNA-1
tig0021939 CDS 89659 89727 89659 ID=Msa1395320-mRNA-1:cds;Parent=Msa1395320-mRNA-1
tig0021939 CDS 89869 89913 89869 ID=Msa1395320-mRNA-1:cds;Parent=Msa1395320-mRNA-1
tig0021939 CDS 90068 90142 90068 ID=Msa1395320-mRNA-1:cds;Parent=Msa1395320-mRNA-1
tig0021939 CDS 90584 90695 90584 ID=Msa1395320-mRNA-1:cds;Parent=Msa1395320-mRNA-1
tig0021939 CDS 90817 90900 90817 ID=Msa1395320-mRNA-1:cds;Parent=Msa1395320-mRNA-1
tig0021939 CDS 91039 91072 91039 ID=Msa1395320-mRNA-1:cds;Parent=Msa1395320-mRNA-1
tig0021939 CDS 91151 91219 91151 ID=Msa1395320-mRNA-1:cds;Parent=Msa1395320-mRNA-1
tig0021939 CDS 92022 92096 92022 ID=Msa1395320-mRNA-1:cds;Parent=Msa1395320-mRNA-1
tig0021939 three_prime_UTR 92097 92274 92097 ID=Msa1395320-mRNA-1:three_prime_utr;Parent=Msa1395320-mRNA-1
Gene Sequence

>Msa1395320

ATGTCTGACAAAGGAGGAAAGGGTGGTTCTCTGTTGAGTAAAGGTGGAGGGCTGAAGGGGAAAGATGATAGTGCAACAAAATCAGCAAAGGCAAGGAAAGTTCAGTTTTCCGAAGGTCTATTTGAATCCAGATCAAACGGTCCAACTTCTGGTGGCAAAGGGGACAAGGTTGCAAATGGTGGAAAGAGTTCTGCTGCAAAAGACCCACATCAATTTGAACATAGAGTTGATCAAGAACTACCAGAAAACTTCAAATGCTTGATGGACTGCGAAGCTGCATCTATGTTACAAGGAATTCAAGATCAAATGGTTGCGTTATCAAGAGATCCATCTATCAAAATGCCCGCATCATTTGACAAGGGGCTGCACTATGCCAAAAGCAGCAGCAGCAGCAAGTATTCAAATCCCGAGTCTGTTAGACACGCTCTTGAGCCTCTAATGAATCATGATCTCACCGAGAGCGAGATATGTGTGATTGCTAATGTATGCCCAGAAACTGCTGATGAAGTTTTTGCTCTCCTCCCATCATTAAAGTTTTACCGTTTAGGAGAGCTAGAAGTAATCGCTCTGGCAAATGTAGCACATTCAAAACGCATTGAGACAATATAA

Protein sequence

>Msa1395320

MSDKGGKGGSLLSKGGGLKGKDDSATKSAKARKVQFSEGLFESRSNGPTSGGKGDKVANGGKSSAAKDPHQFEHRVDQELPENFKCLMDCEAASMLQGIQDQMVALSRDPSIKMPASFDKGLHYAKSSSSSKYSNPESVRHALEPLMNHDLTESEICVIANVCPETADEVFALLPSLKFYRLGELEVIALANVAHSKRIETI*