Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677570 | XP_003605731.2 | 90.508 | 590 | 13 | 1 | 1 | 547 | 1 | 590 | 0.0 | 1102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677570 | sp|Q5MAU8|PPA27_ARATH | 33.566 | 572 | 279 | 14 | 37 | 546 | 13 | 545 | 4.80e-96 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677570 | G7JSI6 | 90.508 | 590 | 13 | 1 | 1 | 547 | 1 | 590 | 0.0 | 1102 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106650 | Msa0677570 | -0.821162 | 4.675461e-53 | -8.615850e-47 |
| Msa0677570 | Msa0866800 | 0.903064 | 5.100697e-79 | -8.615850e-47 |
| Msa0677570 | Msa0923350 | 0.817023 | 4.088798e-52 | -8.615850e-47 |
| Msa0677570 | Msa1134040 | -0.800406 | 1.463190e-48 | -8.615850e-47 |
| Msa0204780 | Msa0677570 | 0.822332 | 2.506977e-53 | -8.615850e-47 |
| Msa0428690 | Msa0677570 | 0.833357 | 5.585992e-56 | -8.615850e-47 |
| Msa0475050 | Msa0677570 | 0.808573 | 2.897743e-50 | -8.615850e-47 |
| Msa0542360 | Msa0677570 | 0.931818 | 2.151091e-94 | -8.615850e-47 |
| Msa0598560 | Msa0677570 | 0.878106 | 3.671644e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677570 | MtrunA17_Chr4g0022251 | 90.508 | 590 | 13 | 1 | 1 | 547 | 1 | 590 | 0.0 | 1102 |
| Msa0677570 | MtrunA17_Chr1g0173511 | 78.742 | 461 | 43 | 3 | 142 | 547 | 5 | 465 | 0.0 | 726 |
| Msa0677570 | MtrunA17_Chr3g0116051 | 33.764 | 542 | 252 | 17 | 68 | 545 | 58 | 556 | 4.91e-88 | 284 |
| Msa0677570 | MtrunA17_Chr5g0419621 | 32.784 | 607 | 292 | 20 | 1 | 546 | 2 | 553 | 5.07e-87 | 281 |
| Msa0677570 | MtrunA17_Chr4g0057551 | 33.837 | 529 | 250 | 15 | 80 | 546 | 71 | 561 | 6.13e-87 | 281 |
| Msa0677570 | MtrunA17_Chr8g0364481 | 33.586 | 527 | 251 | 15 | 80 | 545 | 57 | 545 | 1.69e-86 | 279 |
| Msa0677570 | MtrunA17_Chr1g0173501 | 78.000 | 150 | 24 | 3 | 1 | 142 | 1 | 149 | 2.03e-60 | 197 |
| Msa0677570 | MtrunA17_Chr4g0043001 | 28.694 | 582 | 241 | 20 | 64 | 538 | 4 | 518 | 9.93e-47 | 173 |
| Msa0677570 | MtrunA17_Chr3g0116091 | 30.159 | 378 | 204 | 16 | 199 | 545 | 4 | 352 | 3.53e-44 | 161 |
| Msa0677570 | MtrunA17_Chr4g0043021 | 28.281 | 541 | 236 | 20 | 87 | 538 | 41 | 518 | 1.51e-43 | 164 |
| Msa0677570 | MtrunA17_Chr3g0116071 | 30.537 | 298 | 132 | 8 | 195 | 486 | 4 | 232 | 7.05e-36 | 134 |
| Msa0677570 | MtrunA17_Chr7g0266131 | 25.501 | 349 | 171 | 11 | 206 | 507 | 45 | 351 | 4.54e-22 | 99.0 |
| Msa0677570 | MtrunA17_Chr5g0443881 | 25.301 | 332 | 158 | 11 | 231 | 512 | 62 | 353 | 5.14e-18 | 86.7 |
| Msa0677570 | MtrunA17_Chr3g0098721 | 24.398 | 332 | 161 | 10 | 231 | 512 | 56 | 347 | 1.00e-17 | 85.9 |
| Msa0677570 | MtrunA17_Chr4g0064541 | 28.479 | 309 | 158 | 16 | 209 | 493 | 45 | 314 | 2.42e-17 | 84.7 |
| Msa0677570 | MtrunA17_Chr1g0178831 | 25.373 | 268 | 131 | 5 | 283 | 507 | 102 | 343 | 2.75e-17 | 84.3 |
| Msa0677570 | MtrunA17_Chr7g0266151 | 23.873 | 377 | 169 | 13 | 216 | 538 | 47 | 359 | 3.12e-17 | 84.3 |
| Msa0677570 | MtrunA17_Chr3g0121411 | 23.038 | 395 | 190 | 12 | 223 | 532 | 77 | 442 | 1.10e-14 | 77.0 |
| Msa0677570 | MtrunA17_Chr3g0121431 | 22.532 | 395 | 192 | 12 | 223 | 532 | 132 | 497 | 1.46e-14 | 76.6 |
| Msa0677570 | MtrunA17_Chr7g0236041 | 24.183 | 306 | 168 | 10 | 223 | 489 | 76 | 356 | 4.46e-14 | 75.1 |
| Msa0677570 | MtrunA17_Chr4g0019091 | 23.410 | 393 | 175 | 15 | 216 | 538 | 55 | 391 | 9.69e-14 | 73.6 |
| Msa0677570 | MtrunA17_Chr1g0211041 | 23.822 | 382 | 188 | 15 | 216 | 538 | 56 | 393 | 1.23e-13 | 73.2 |
| Msa0677570 | MtrunA17_Chr6g0453731 | 23.932 | 234 | 123 | 6 | 283 | 486 | 146 | 354 | 7.26e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677570 | AT5G50400.1 | 33.566 | 572 | 279 | 14 | 37 | 546 | 13 | 545 | 4.88e-97 | 307 |
| Msa0677570 | AT5G50400.2 | 34.990 | 503 | 235 | 11 | 105 | 546 | 2 | 473 | 2.81e-91 | 290 |
| Msa0677570 | AT4G24890.1 | 32.703 | 529 | 257 | 16 | 79 | 546 | 59 | 549 | 6.62e-88 | 283 |
| Msa0677570 | AT1G13750.1 | 34.394 | 503 | 222 | 14 | 96 | 534 | 73 | 531 | 2.37e-87 | 282 |
| Msa0677570 | AT2G03450.1 | 28.315 | 558 | 242 | 18 | 73 | 538 | 24 | 515 | 6.39e-46 | 171 |
| Msa0677570 | AT1G13900.1 | 28.229 | 542 | 261 | 20 | 73 | 538 | 26 | 515 | 2.12e-42 | 161 |
| Msa0677570 | AT4G13700.1 | 24.825 | 286 | 180 | 9 | 226 | 486 | 73 | 348 | 4.39e-15 | 78.2 |
| Msa0677570 | AT4G13700.2 | 24.825 | 286 | 180 | 9 | 226 | 486 | 73 | 348 | 6.94e-15 | 77.4 |
| Msa0677570 | AT3G52820.1 | 23.034 | 356 | 173 | 8 | 241 | 538 | 46 | 358 | 1.38e-14 | 76.6 |
| Msa0677570 | AT3G20500.1 | 25.000 | 356 | 161 | 14 | 231 | 538 | 60 | 357 | 3.53e-14 | 75.1 |
| Msa0677570 | AT1G56360.1 | 24.543 | 383 | 180 | 16 | 220 | 538 | 54 | 391 | 3.88e-14 | 75.1 |
| Msa0677570 | AT3G52780.1 | 24.632 | 272 | 130 | 6 | 283 | 506 | 100 | 344 | 4.33e-14 | 75.1 |
| Msa0677570 | AT4G36350.1 | 23.936 | 376 | 190 | 12 | 220 | 538 | 55 | 391 | 8.54e-14 | 74.3 |
| Msa0677570 | AT2G27190.1 | 22.931 | 423 | 206 | 16 | 187 | 538 | 23 | 396 | 5.72e-13 | 71.6 |
| Msa0677570 | AT3G52780.2 | 25.121 | 207 | 125 | 5 | 283 | 486 | 100 | 279 | 4.20e-12 | 68.2 |
| Msa0677570 | AT3G07130.2 | 24.893 | 233 | 121 | 7 | 283 | 486 | 140 | 347 | 8.23e-12 | 68.2 |
| Msa0677570 | AT3G07130.1 | 24.893 | 233 | 121 | 7 | 283 | 486 | 140 | 347 | 1.04e-11 | 67.8 |
Find 125 sgRNAs with CRISPR-Local
Find 426 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAGTCCTGCCAAGGATTT+TGG | 0.134636 | 4_4:+31722820 | Msa0677570:CDS |
| ATTCATTTCCTTTGGTGATA+TGG | 0.160418 | 4_4:+31723266 | Msa0677570:CDS |
| CTGATAATGCAGTAAAATTT+TGG | 0.174680 | 4_4:-31718017 | None:intergenic |
| AATCCTAAGAAGCCACTTTA+TGG | 0.194096 | 4_4:+31722005 | Msa0677570:CDS |
| CATTCATGGAATCCTCAAAT+TGG | 0.201189 | 4_4:+31717881 | Msa0677570:exon |
| AGCTGGTGGAGTTGAAAATT+TGG | 0.227346 | 4_4:-31723223 | None:intergenic |
| TGTCCATAAAGTGGCTTCTT+AGG | 0.235315 | 4_4:-31722008 | None:intergenic |
| TTCAGAGATTATGTCGATTC+TGG | 0.253362 | 4_4:+31723879 | Msa0677570:intron |
| AGAAAATGTGGCCTTGGTTT+TGG | 0.278781 | 4_4:-31717788 | None:intergenic |
| TTCATTTCCTTTGGTGATAT+GGG | 0.313819 | 4_4:+31723267 | Msa0677570:CDS |
| TTTCCATTCATATTCATTCA+TGG | 0.318705 | 4_4:+31717867 | Msa0677570:exon |
| GCAGTATAACTGGATGAAAA+AGG | 0.337674 | 4_4:+31724163 | Msa0677570:intron |
| TAGACATTGAAGGGCTAATA+AGG | 0.346423 | 4_4:-31717939 | None:intergenic |
| CGAAACCGAGAGATGGAGAT+TGG | 0.347083 | 4_4:+31718169 | Msa0677570:CDS |
| GAGCTCAAATTCATTTCCTT+TGG | 0.349534 | 4_4:+31723258 | Msa0677570:CDS |
| AACTTTCCCTTCCTCAACTT+TGG | 0.356583 | 4_4:+31717963 | Msa0677570:CDS |
| TTTCTCAGCCCCTGCCTTGT+TGG | 0.369987 | 4_4:+31721957 | Msa0677570:CDS |
| GGCTTATCCTTTGCTGCAGT+TGG | 0.372410 | 4_4:-31723969 | None:intergenic |
| AGAGTATAGAATTTGAATTA+AGG | 0.381284 | 4_4:-31717841 | None:intergenic |
| AAAGGAAGAAAATGTGGCCT+TGG | 0.387156 | 4_4:-31717794 | None:intergenic |
| TTGAAGCTACTGGACTAATA+AGG | 0.387415 | 4_4:-31723715 | None:intergenic |
| TATTCTTACTTGGAATTTGA+AGG | 0.390234 | 4_4:-31718207 | None:intergenic |
| TCCTTTGCTGCAGTTGGCAT+TGG | 0.393804 | 4_4:-31723963 | None:intergenic |
| ATTGTTTGAGAATTTGTCTA+AGG | 0.400148 | 4_4:-31724826 | None:intergenic |
| AAAACAATCACACAAAGCTT+TGG | 0.410630 | 4_4:+31717818 | Msa0677570:five_prime_UTR |
| CATGCTGTCATTGGCATGGC+TGG | 0.413111 | 4_4:+31724798 | Msa0677570:CDS |
| TTCCTCAACTTTGGACCTTA+CGG | 0.414650 | 4_4:+31717972 | Msa0677570:CDS |
| AGTGCCTACTCCTACAGATA+TGG | 0.416593 | 4_4:+31722898 | Msa0677570:CDS |
| ATTCATGGAATCCTCAAATT+GGG | 0.419365 | 4_4:+31717882 | Msa0677570:exon |
| TCAGCCCCTGCCTTGTTGGA+AGG | 0.422865 | 4_4:+31721961 | Msa0677570:CDS |
| AAACACCGAGTTTACATTGT+TGG | 0.425131 | 4_4:-31723633 | None:intergenic |
| CATTCCTATAAAAGATCAAA+AGG | 0.427448 | 4_4:+31724734 | Msa0677570:CDS |
| CTGTAGGAGTAGGCACTTGA+TGG | 0.427457 | 4_4:-31722892 | None:intergenic |
| CAGCTCAAATTCTAAATTGT+CGG | 0.428865 | 4_4:+31718110 | Msa0677570:CDS |
| ATTGGAAAGTATGTTTCATA+TGG | 0.439381 | 4_4:-31723945 | None:intergenic |
| CTGATATTCAGTTTAAGATA+AGG | 0.443765 | 4_4:-31718090 | None:intergenic |
| GAGTTCTATTATCTACAAAC+TGG | 0.450191 | 4_4:+31718320 | Msa0677570:CDS |
| GGAGACATAAGTTATGCAAC+TGG | 0.453721 | 4_4:+31723662 | Msa0677570:CDS |
| TATGAAACTCTTGAAGCTAC+TGG | 0.454406 | 4_4:-31723725 | None:intergenic |
| GTTTCATACATGACAGCAAT+CGG | 0.454768 | 4_4:+31723740 | Msa0677570:CDS |
| CCGATGATGGTCTAGTAAAT+CGG | 0.457588 | 4_4:+31723182 | Msa0677570:intron |
| CAGCAAATCCAATATGCAAA+TGG | 0.463555 | 4_4:+31722619 | Msa0677570:CDS |
| ATAGTAATGATGATAACTCT+TGG | 0.464170 | 4_4:-31717731 | None:intergenic |
| TTTGTCACGGTTACCGTCAC+CGG | 0.464369 | 4_4:+31718141 | Msa0677570:CDS |
| GGTCTAGTAAATCGGCTGAT+TGG | 0.472495 | 4_4:+31723190 | Msa0677570:intron |
| ATTCCATGAATGAATATGAA+TGG | 0.472503 | 4_4:-31717870 | None:intergenic |
| TAGTAATGATGATAACTCTT+GGG | 0.473454 | 4_4:-31717730 | None:intergenic |
| TTGATAACCGATAGTGCTCC+AGG | 0.477995 | 4_4:-31723587 | None:intergenic |
| AGCTCATCTGATCCTCCAGC+TGG | 0.484295 | 4_4:-31723240 | None:intergenic |
| ATAGAGTTTGTGTTCTTCAC+TGG | 0.484965 | 4_4:+31721930 | Msa0677570:CDS |
| CCAAAATCCTTGGCAGGACT+AGG | 0.485338 | 4_4:-31722820 | None:intergenic |
| ATCCATTCAGCACTTATGAC+TGG | 0.493458 | 4_4:+31722862 | Msa0677570:CDS |
| TTCAGAAGAACACTACATTC+AGG | 0.496934 | 4_4:+31723308 | Msa0677570:CDS |
| GCTCCTGTACATGCTGTCAT+TGG | 0.497856 | 4_4:+31724789 | Msa0677570:CDS |
| CCGCATTCACCACCAGAGTC+AGG | 0.499819 | 4_4:-31723918 | None:intergenic |
| GTTTATGTTACTCCTGACTC+TGG | 0.501264 | 4_4:+31723906 | Msa0677570:CDS |
| AATGCAAGAAAGAACAGAAT+GGG | 0.502167 | 4_4:+31721844 | Msa0677570:CDS |
| ATGAGATTGACATGGGTTAG+TGG | 0.502611 | 4_4:+31722583 | Msa0677570:CDS |
| GAAACCGAGAGATGGAGATT+GGG | 0.503019 | 4_4:+31718170 | Msa0677570:CDS |
| TCATCATTACTATTAAGAAA+AGG | 0.504414 | 4_4:+31717741 | Msa0677570:five_prime_UTR |
| AGTGGACCTTCCAACAAGGC+AGG | 0.508899 | 4_4:-31721967 | None:intergenic |
| TGAGATTGACATGGGTTAGT+GGG | 0.513254 | 4_4:+31722584 | Msa0677570:CDS |
| TGCCATCCAAAATCCTTGGC+AGG | 0.514716 | 4_4:-31722826 | None:intergenic |
| GGGAAAGTTGTAGACATTGA+AGG | 0.519414 | 4_4:-31717949 | None:intergenic |
| TGAACAGCCTGGAGCACTAT+CGG | 0.522454 | 4_4:+31723580 | Msa0677570:intron |
| GAGTTTGTGTTCTTCACTGG+TGG | 0.522900 | 4_4:+31721933 | Msa0677570:CDS |
| AGTGCTGAATGGATGAATCC+TGG | 0.523299 | 4_4:-31722853 | None:intergenic |
| TCCAATGCCAACTGCAGCAA+AGG | 0.523966 | 4_4:+31723962 | Msa0677570:CDS |
| CTTGAGATATGTCCATAAAG+TGG | 0.530030 | 4_4:-31722017 | None:intergenic |
| GACATACCTTGACAGGGTAA+TGG | 0.531072 | 4_4:-31718370 | None:intergenic |
| GTCCAGTCATAAGTGCTGAA+TGG | 0.532983 | 4_4:-31722864 | None:intergenic |
| ATGCCAATGACAGCATGTAC+AGG | 0.534351 | 4_4:-31724792 | None:intergenic |
| ATCATGCCATCCAAAATCCT+TGG | 0.535399 | 4_4:-31722830 | None:intergenic |
| TCATCTGATCCTCCAGCTGG+TGG | 0.542127 | 4_4:-31723237 | None:intergenic |
| CTGGTCCGAAAATTCTGAGC+AGG | 0.542863 | 4_4:+31724049 | Msa0677570:CDS |
| GAATGCAAGAAAGAACAGAA+TGG | 0.545134 | 4_4:+31721843 | Msa0677570:CDS |
| GCTTTGCCATTACCCTGTCA+AGG | 0.547055 | 4_4:+31718364 | Msa0677570:CDS |
| GCCACCCAATCTCCATCTCT+CGG | 0.548027 | 4_4:-31718174 | None:intergenic |
| TGTGCATGACATACCTTGAC+AGG | 0.552123 | 4_4:-31718377 | None:intergenic |
| TTTGCATATTGGATTTGCTG+AGG | 0.552556 | 4_4:-31722616 | None:intergenic |
| AACCGTAAGGTCCAAAGTTG+AGG | 0.554907 | 4_4:-31717974 | None:intergenic |
| GGCGTTTCGAAACCGAGAGA+TGG | 0.556098 | 4_4:+31718162 | Msa0677570:CDS |
| TTTCATACATGACAGCAATC+GGG | 0.557285 | 4_4:+31723741 | Msa0677570:CDS |
| CGGTTTCGAAACGCCGGTGA+CGG | 0.566494 | 4_4:-31718154 | None:intergenic |
| TGGACCTTCCAACAAGGCAG+GGG | 0.567412 | 4_4:-31721965 | None:intergenic |
| TTAGGATTAGCAAAACTCAA+AGG | 0.568493 | 4_4:-31721990 | None:intergenic |
| TAATATCAACTGAACATGAC+TGG | 0.570557 | 4_4:+31724030 | Msa0677570:CDS |
| GGAAAGTTGTAGACATTGAA+GGG | 0.572421 | 4_4:-31717948 | None:intergenic |
| AAATTCTAAATTGTCGGATG+AGG | 0.576263 | 4_4:+31718116 | Msa0677570:CDS |
| TGTACATGCTGTCATTGGCA+TGG | 0.577657 | 4_4:+31724794 | Msa0677570:CDS |
| CCTTGGTACTCAATTGAACA+AGG | 0.579171 | 4_4:+31723990 | Msa0677570:CDS |
| GTCGGATGAGGAGTTTGTCA+CGG | 0.580809 | 4_4:+31718128 | Msa0677570:CDS |
| ATTCCTATAAAAGATCAAAA+GGG | 0.581083 | 4_4:+31724735 | Msa0677570:CDS |
| GTTCTTCTGAAGCATCAAGA+GGG | 0.581323 | 4_4:-31723296 | None:intergenic |
| CTTTAGTGTGTGTAACCGTA+AGG | 0.581491 | 4_4:-31717987 | None:intergenic |
| GTGGACCTTCCAACAAGGCA+GGG | 0.584213 | 4_4:-31721966 | None:intergenic |
| ATCTCTCGGTTTCGAAACGC+CGG | 0.585583 | 4_4:-31718160 | None:intergenic |
| CTGCAGCAAAGGATAAGCCT+TGG | 0.586086 | 4_4:+31723973 | Msa0677570:CDS |
| GTAAGGTCCAAAGTTGAGGA+AGG | 0.587368 | 4_4:-31717970 | None:intergenic |
| GAACATGAAACAGGTTGACT+TGG | 0.593153 | 4_4:+31724647 | Msa0677570:intron |
| CCTTCCATATCTGTAGGAGT+AGG | 0.593746 | 4_4:-31722902 | None:intergenic |
| TTCATACCTTCCATATCTGT+AGG | 0.601997 | 4_4:-31722908 | None:intergenic |
| GTAAACTCGGTGTTTCACAT+TGG | 0.603061 | 4_4:+31723641 | Msa0677570:CDS |
| ACCGAGAGATGGAGATTGGG+TGG | 0.606477 | 4_4:+31718173 | Msa0677570:CDS |
| ATTAGCAAAACTCAAAGGAG+TGG | 0.611195 | 4_4:-31721985 | None:intergenic |
| AGTAGTGCCTAGTCCTGCCA+AGG | 0.616806 | 4_4:+31722813 | Msa0677570:CDS |
| TTCTTCTGAAGCATCAAGAG+GGG | 0.617475 | 4_4:-31723295 | None:intergenic |
| GACATGGGTTAGTGGGGACA+AGG | 0.620413 | 4_4:+31722591 | Msa0677570:CDS |
| GAGATTGACATGGGTTAGTG+GGG | 0.620979 | 4_4:+31722585 | Msa0677570:CDS |
| TATGTTACTCCTGACTCTGG+TGG | 0.623778 | 4_4:+31723909 | Msa0677570:CDS |
| CCTTGTTCAATTGAGTACCA+AGG | 0.628074 | 4_4:-31723990 | None:intergenic |
| TGTTGCAGATGAGATTGACA+TGG | 0.631192 | 4_4:+31722575 | Msa0677570:intron |
| TAAGGTCCAAAGTTGAGGAA+GGG | 0.632550 | 4_4:-31717969 | None:intergenic |
| TTCTCTCATAGTTATGCACA+TGG | 0.637196 | 4_4:-31724680 | None:intergenic |
| CCTGACTCTGGTGGTGAATG+CGG | 0.641111 | 4_4:+31723918 | Msa0677570:CDS |
| TGTTCTTCTGAAGCATCAAG+AGG | 0.645423 | 4_4:-31723297 | None:intergenic |
| CAGCAATCGGGAATCATGAG+AGG | 0.646921 | 4_4:+31723753 | Msa0677570:CDS |
| AAGGAGTGGACCTTCCAACA+AGG | 0.647985 | 4_4:-31721971 | None:intergenic |
| GAACTCCAACAATGTAAACT+CGG | 0.652719 | 4_4:+31723628 | Msa0677570:CDS |
| AAAGATACAAACCAAAACCA+AGG | 0.655546 | 4_4:+31717777 | Msa0677570:five_prime_UTR |
| ACAGGGTAATGGCAAAGCAG+AGG | 0.665481 | 4_4:-31718359 | None:intergenic |
| CCTACTCCTACAGATATGGA+AGG | 0.668628 | 4_4:+31722902 | Msa0677570:CDS |
| TGCAGTGTGACAACTTGTAG+TGG | 0.671946 | 4_4:+31721870 | Msa0677570:CDS |
| GTTGCAGATGAGATTGACAT+GGG | 0.725180 | 4_4:+31722576 | Msa0677570:intron |
| GTGCATGACATACCTTGACA+GGG | 0.763616 | 4_4:-31718376 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAATATTTTAT+TGG | + | chr4_4:31718987-31719006 | Msa0677570:intron | 0.0% |
| !!! | GAAATTTAATTAATATTTTG+GGG | - | chr4_4:31718925-31718944 | None:intergenic | 10.0% |
| !!! | GGAAATTTAATTAATATTTT+GGG | - | chr4_4:31718926-31718945 | None:intergenic | 10.0% |
| !!! | AGGAAATTTAATTAATATTT+TGG | - | chr4_4:31718927-31718946 | None:intergenic | 10.0% |
| !! | ATAATATTTATGTATATTGA+AGG | - | chr4_4:31719057-31719076 | None:intergenic | 10.0% |
| !! | AAAAATAGGATAAAAAATTA+AGG | - | chr4_4:31720559-31720578 | None:intergenic | 10.0% |
| !!! | AAACATTTTAAATTATCTTA+CGG | - | chr4_4:31721019-31721038 | None:intergenic | 10.0% |
| !! | TGAAAAATAAAATATATTAG+TGG | + | chr4_4:31721516-31721535 | Msa0677570:intron | 10.0% |
| !! | ATTTAAGTAAATGAAAATAA+TGG | + | chr4_4:31723439-31723458 | Msa0677570:intron | 10.0% |
| !! | GAACAAAATAAGTAAATAAA+CGG | + | chr4_4:31718591-31718610 | Msa0677570:intron | 15.0% |
| !! | AACAAAATAAGTAAATAAAC+GGG | + | chr4_4:31718592-31718611 | Msa0677570:intron | 15.0% |
| !! | AAATATCAATAAATATCCAA+AGG | - | chr4_4:31718780-31718799 | None:intergenic | 15.0% |
| !! | TATAATTCCAAGAAAATAAA+TGG | + | chr4_4:31718806-31718825 | Msa0677570:intron | 15.0% |
| !!! | TTAATATTTTATTGGTGATT+AGG | + | chr4_4:31718995-31719014 | Msa0677570:intron | 15.0% |
| !! | TACTAAATATAAGAATGTTA+AGG | - | chr4_4:31719112-31719131 | None:intergenic | 15.0% |
| !! | ATTTCAGCATTTAATTAAAT+AGG | - | chr4_4:31719219-31719238 | None:intergenic | 15.0% |
| !! | TGTATAAAAACAATTTGATT+GGG | - | chr4_4:31719545-31719564 | None:intergenic | 15.0% |
| !!! | TTTTTTAAACGATAAATACA+AGG | + | chr4_4:31719737-31719756 | Msa0677570:intron | 15.0% |
| !! | ATAAAAAATTAAGGCTTAAA+TGG | - | chr4_4:31720550-31720569 | None:intergenic | 15.0% |
| !! | TTTATAAATTTAAATTCCAC+TGG | - | chr4_4:31720913-31720932 | None:intergenic | 15.0% |
| !!! | ACTTATTTTTGAATAGAAAA+TGG | + | chr4_4:31721141-31721160 | Msa0677570:intron | 15.0% |
| !!! | CTTATTTTTGAATAGAAAAT+GGG | + | chr4_4:31721142-31721161 | Msa0677570:intron | 15.0% |
| !! | GAAAACAAAATATTATAAAG+TGG | + | chr4_4:31721352-31721371 | Msa0677570:intron | 15.0% |
| !! | ATAAAATATATTAGTGGTAT+AGG | + | chr4_4:31721522-31721541 | Msa0677570:intron | 15.0% |
| !! | TGATTAAATAACTAAAATGT+AGG | + | chr4_4:31721773-31721792 | Msa0677570:intron | 15.0% |
| !! | TCTAATAATTATAAAATGAG+TGG | + | chr4_4:31722552-31722571 | Msa0677570:intron | 15.0% |
| !!! | TTTTTTCATCTTAAATTGAT+AGG | + | chr4_4:31722787-31722806 | Msa0677570:intron | 15.0% |
| !! | ATTTCAAATTAAATAAGCTT+TGG | + | chr4_4:31723340-31723359 | Msa0677570:intron | 15.0% |
| !! | TCATCATTACTATTAAGAAA+AGG | + | chr4_4:31717741-31717760 | Msa0677570:five_prime_UTR | 20.0% |
| !! | AGAGTATAGAATTTGAATTA+AGG | - | chr4_4:31717844-31717863 | None:intergenic | 20.0% |
| !! | ACAAAATAAGTAAATAAACG+GGG | + | chr4_4:31718593-31718612 | Msa0677570:intron | 20.0% |
| !! | TTGTTTGGCAAATTATTAAT+TGG | + | chr4_4:31718703-31718722 | Msa0677570:intron | 20.0% |
| !!! | TAACTTTCCATTTATTTTCT+TGG | - | chr4_4:31718816-31718835 | None:intergenic | 20.0% |
| !! | AGTAAAAGAGTTTCTAATTA+AGG | - | chr4_4:31718947-31718966 | None:intergenic | 20.0% |
| !! | TTAGTAAAAAATTAAACTCG+AGG | + | chr4_4:31719126-31719145 | Msa0677570:intron | 20.0% |
| !! | TAGTAGTATGAATGAATTAT+GGG | - | chr4_4:31719263-31719282 | None:intergenic | 20.0% |
| !! | TTAGTAGTATGAATGAATTA+TGG | - | chr4_4:31719264-31719283 | None:intergenic | 20.0% |
| !! | CTACTAAATTAGCATTTAAT+TGG | + | chr4_4:31719277-31719296 | Msa0677570:intron | 20.0% |
| !! | GTGTATAAAAACAATTTGAT+TGG | - | chr4_4:31719546-31719565 | None:intergenic | 20.0% |
| !! | GTATATATGTGTACATTTAA+AGG | + | chr4_4:31719764-31719783 | Msa0677570:intron | 20.0% |
| !! | ATGTTAAATATAACTGACAA+TGG | - | chr4_4:31720055-31720074 | None:intergenic | 20.0% |
| !! | AAACAAAAGATAGTTACATA+TGG | + | chr4_4:31720414-31720433 | Msa0677570:intron | 20.0% |
| !! | TAGATCTATATACGAAAAAT+AGG | - | chr4_4:31720573-31720592 | None:intergenic | 20.0% |
| !!! | TGTGATTTTAGAAATAGTTA+TGG | - | chr4_4:31721049-31721068 | None:intergenic | 20.0% |
| !!! | TCTAAAATCACATTTACAAT+TGG | + | chr4_4:31721057-31721076 | Msa0677570:intron | 20.0% |
| !!! | GTTTATTTTTTATGTAGTGT+CGG | - | chr4_4:31721123-31721142 | None:intergenic | 20.0% |
| !! | GAATATTATGATAGAGAATT+GGG | - | chr4_4:31721206-31721225 | None:intergenic | 20.0% |
| !! | AGAATATTATGATAGAGAAT+TGG | - | chr4_4:31721207-31721226 | None:intergenic | 20.0% |
| !!! | GACTAACTAATATTTTTGTA+GGG | - | chr4_4:31722271-31722290 | None:intergenic | 20.0% |
| !!! | AGACTAACTAATATTTTTGT+AGG | - | chr4_4:31722272-31722291 | None:intergenic | 20.0% |
| !! | AAATTAAACTCTTTCATGTT+CGG | - | chr4_4:31722316-31722335 | None:intergenic | 20.0% |
| !! | AATTAGTATGAAAAATGTTG+TGG | + | chr4_4:31722960-31722979 | Msa0677570:intron | 20.0% |
| !! | TTACTACAATTCAGTTATTA+TGG | - | chr4_4:31724356-31724375 | None:intergenic | 20.0% |
| !! | TAATAACTGAATTGTAGTAA+AGG | + | chr4_4:31724356-31724375 | Msa0677570:intron | 20.0% |
| !! | ATTCCTATAAAAGATCAAAA+GGG | + | chr4_4:31724735-31724754 | Msa0677570:CDS | 20.0% |
| ! | TAGTAATGATGATAACTCTT+GGG | - | chr4_4:31717733-31717752 | None:intergenic | 25.0% |
| ! | ATAGTAATGATGATAACTCT+TGG | - | chr4_4:31717734-31717753 | None:intergenic | 25.0% |
| ! | TTTCCATTCATATTCATTCA+TGG | + | chr4_4:31717867-31717886 | Msa0677570:exon | 25.0% |
| ! | ATTCCATGAATGAATATGAA+TGG | - | chr4_4:31717873-31717892 | None:intergenic | 25.0% |
| !!! | CTGATAATGCAGTAAAATTT+TGG | - | chr4_4:31718020-31718039 | None:intergenic | 25.0% |
| !! | TTACTGCATTATCAGATTTT+AGG | + | chr4_4:31718025-31718044 | Msa0677570:CDS | 25.0% |
| !! | CTGATATTCAGTTTAAGATA+AGG | - | chr4_4:31718093-31718112 | None:intergenic | 25.0% |
| ! | TATTCTTACTTGGAATTTGA+AGG | - | chr4_4:31718210-31718229 | None:intergenic | 25.0% |
| ! | TCCAAGTAAGAATATTACAT+TGG | + | chr4_4:31718216-31718235 | Msa0677570:intron | 25.0% |
| ! | ACCAATGTAATATTCTTACT+TGG | - | chr4_4:31718220-31718239 | None:intergenic | 25.0% |
| !!! | TCTCTTTGAGATTAATGATA+TGG | + | chr4_4:31718448-31718467 | Msa0677570:intron | 25.0% |
| !!! | CTCTTTGAGATTAATGATAT+GGG | + | chr4_4:31718449-31718468 | Msa0677570:intron | 25.0% |
| ! | CAAAATAAGTAAATAAACGG+GGG | + | chr4_4:31718594-31718613 | Msa0677570:intron | 25.0% |
| ! | AAAATAAGTAAATAAACGGG+GGG | + | chr4_4:31718595-31718614 | Msa0677570:intron | 25.0% |
| !!! | TATATTACTTCTAGCTTGTT+TGG | + | chr4_4:31718688-31718707 | Msa0677570:intron | 25.0% |
| ! | TATGAAAACAATAGTTGTGT+TGG | + | chr4_4:31719074-31719093 | Msa0677570:intron | 25.0% |
| !!! | AGACTCATACTATTTTTGAA+TGG | - | chr4_4:31719417-31719436 | None:intergenic | 25.0% |
| ! | ATGAAAACTTGGTTTCAATA+CGG | - | chr4_4:31719447-31719466 | None:intergenic | 25.0% |
| !!! | CATTTATGTTGTCTTGTTTT+AGG | - | chr4_4:31719885-31719904 | None:intergenic | 25.0% |
| ! | CTAAAACAAGACAACATAAA+TGG | + | chr4_4:31719883-31719902 | Msa0677570:intron | 25.0% |
| ! | AAATATAACTGACAATGGAT+TGG | - | chr4_4:31720050-31720069 | None:intergenic | 25.0% |
| ! | AAGTTATGTAGCTAATGATA+TGG | - | chr4_4:31720110-31720129 | None:intergenic | 25.0% |
| ! | GATAGAGTTTAAACTTCAAA+AGG | - | chr4_4:31720142-31720161 | None:intergenic | 25.0% |
| ! | GATGAAAATATACTATCAGT+TGG | + | chr4_4:31720259-31720278 | Msa0677570:intron | 25.0% |
| !!! | TCTTTTGTTTATGCAATAAG+AGG | - | chr4_4:31720404-31720423 | None:intergenic | 25.0% |
| !!! | TCAAGAGAGCATATTTTTTT+TGG | - | chr4_4:31720797-31720816 | None:intergenic | 25.0% |
| !!! | ACATTGTTTTGATCTCAATT+TGG | - | chr4_4:31720857-31720876 | None:intergenic | 25.0% |
| ! | AATTAAACTCCCATAACATA+AGG | + | chr4_4:31721269-31721288 | Msa0677570:intron | 25.0% |
| ! | ATTAAACTCCCATAACATAA+GGG | + | chr4_4:31721270-31721289 | Msa0677570:intron | 25.0% |
| ! | ATGCAATTGCTCTATTTATA+AGG | - | chr4_4:31721599-31721618 | None:intergenic | 25.0% |
| ! | TATTGAAGTTTGAAGGATTT+GGG | - | chr4_4:31721674-31721693 | None:intergenic | 25.0% |
| ! | ATCATTTATTACGATATGCA+GGG | + | chr4_4:31722071-31722090 | Msa0677570:intron | 25.0% |
| !!! | ATATGCAGGGTTTTAAATAA+AGG | + | chr4_4:31722084-31722103 | Msa0677570:intron | 25.0% |
| ! | AATCAAAAACCGTTATATTG+CGG | - | chr4_4:31722130-31722149 | None:intergenic | 25.0% |
| ! | AACAAATACTTAAATGAGCA+TGG | - | chr4_4:31722716-31722735 | None:intergenic | 25.0% |
| ! | TACTGAAAACTTTGATATTG+CGG | + | chr4_4:31722998-31723017 | Msa0677570:intron | 25.0% |
| !! | ATTGGAAAGTATGTTTCATA+TGG | - | chr4_4:31723948-31723967 | None:intergenic | 25.0% |
| !! | TTTTTGTATTGCAGTATAAC+TGG | + | chr4_4:31724153-31724172 | Msa0677570:intron | 25.0% |
| ! | TAACTGTTTGAATCTTGAAT+CGG | - | chr4_4:31724382-31724401 | None:intergenic | 25.0% |
| ! | TCAGAAATTTATTAAAGCTG+TGG | + | chr4_4:31724527-31724546 | Msa0677570:intron | 25.0% |
| ! | CATCAAACTTTCTTTGAATT+TGG | + | chr4_4:31724580-31724599 | Msa0677570:intron | 25.0% |
| !! | ATAAGTTAGCTTCTTATACA+AGG | - | chr4_4:31724618-31724637 | None:intergenic | 25.0% |
| !! | CTTTTGATCTTTTATAGGAA+TGG | - | chr4_4:31724736-31724755 | None:intergenic | 25.0% |
| ! | CATTCCTATAAAAGATCAAA+AGG | + | chr4_4:31724734-31724753 | Msa0677570:CDS | 25.0% |
| ! | ATTGTTTGAGAATTTGTCTA+AGG | - | chr4_4:31724829-31724848 | None:intergenic | 25.0% |
| AAAGATACAAACCAAAACCA+AGG | + | chr4_4:31717777-31717796 | Msa0677570:five_prime_UTR | 30.0% | |
| !!! | GTTTTGAAAGGAAGAAAATG+TGG | - | chr4_4:31717803-31717822 | None:intergenic | 30.0% |
| !!! | CTTTGTGTGATTGTTTTGAA+AGG | - | chr4_4:31717815-31717834 | None:intergenic | 30.0% |
| AAAACAATCACACAAAGCTT+TGG | + | chr4_4:31717818-31717837 | Msa0677570:five_prime_UTR | 30.0% | |
| ATTCATGGAATCCTCAAATT+GGG | + | chr4_4:31717882-31717901 | Msa0677570:exon | 30.0% | |
| !!! | ATGTTTTAGAACCCAATTTG+AGG | - | chr4_4:31717896-31717915 | None:intergenic | 30.0% |
| !! | TGCAGTAAAATTTTGGTGTA+AGG | - | chr4_4:31718013-31718032 | None:intergenic | 30.0% |
| CAGCTCAAATTCTAAATTGT+CGG | + | chr4_4:31718110-31718129 | Msa0677570:CDS | 30.0% | |
| AAATTCTAAATTGTCGGATG+AGG | + | chr4_4:31718116-31718135 | Msa0677570:CDS | 30.0% | |
| GAGTTCTATTATCTACAAAC+TGG | + | chr4_4:31718320-31718339 | Msa0677570:CDS | 30.0% | |
| GGGGGGAAAATTAATAAAAA+GGG | + | chr4_4:31718612-31718631 | Msa0677570:intron | 30.0% | |
| CAATAAATATCCAAAGGTTG+TGG | - | chr4_4:31718774-31718793 | None:intergenic | 30.0% | |
| ! | TCCATCATTTTGTATTGTCA+AGG | + | chr4_4:31718838-31718857 | Msa0677570:intron | 30.0% |
| ! | CCATCATTTTGTATTGTCAA+GGG | + | chr4_4:31718839-31718858 | Msa0677570:intron | 30.0% |
| GCTATAGTTGAGATCAATAT+TGG | + | chr4_4:31718895-31718914 | Msa0677570:intron | 30.0% | |
| GTAAAAAATTAAACTCGAGG+AGG | + | chr4_4:31719129-31719148 | Msa0677570:intron | 30.0% | |
| ATTAGCATTTAATTGGACGT+TGG | + | chr4_4:31719284-31719303 | Msa0677570:intron | 30.0% | |
| !! | AGAGTATTGCTTATCATCAA+AGG | + | chr4_4:31719378-31719397 | Msa0677570:intron | 30.0% |
| ATCATCAAAGGATTTAAACG+TGG | + | chr4_4:31719390-31719409 | Msa0677570:intron | 30.0% | |
| GTTATATGACGATGAAAACT+TGG | - | chr4_4:31719458-31719477 | None:intergenic | 30.0% | |
| ! | AGTTTTCATCGTCATATAAC+AGG | + | chr4_4:31719458-31719477 | Msa0677570:intron | 30.0% |
| ! | GTTTTCATCGTCATATAACA+GGG | + | chr4_4:31719459-31719478 | Msa0677570:intron | 30.0% |
| AACTTCTGACAGTATGTTTA+AGG | + | chr4_4:31719581-31719600 | Msa0677570:intron | 30.0% | |
| ACTTCTGACAGTATGTTTAA+GGG | + | chr4_4:31719582-31719601 | Msa0677570:intron | 30.0% | |
| !!! | TGTTAGGTGGATGTTTTTTT+TGG | - | chr4_4:31719832-31719851 | None:intergenic | 30.0% |
| !! | GTTTTAGGCCTATTAGAATT+GGG | - | chr4_4:31719870-31719889 | None:intergenic | 30.0% |
| !! | TGTTTTAGGCCTATTAGAAT+TGG | - | chr4_4:31719871-31719890 | None:intergenic | 30.0% |
| AAGACAACATAAATGGAAAG+TGG | + | chr4_4:31719890-31719909 | Msa0677570:intron | 30.0% | |
| ATAAATGGAAAGTGGAAATC+TGG | + | chr4_4:31719898-31719917 | Msa0677570:intron | 30.0% | |
| TAAATGGAAAGTGGAAATCT+GGG | + | chr4_4:31719899-31719918 | Msa0677570:intron | 30.0% | |
| !!! | TTTTTTTTAGACCGATACCT+TGG | + | chr4_4:31719967-31719986 | Msa0677570:intron | 30.0% |
| !!! | TTTTTTTAGACCGATACCTT+GGG | + | chr4_4:31719968-31719987 | Msa0677570:intron | 30.0% |
| TATACCGTGTGAATCTTAAT+CGG | - | chr4_4:31720167-31720186 | None:intergenic | 30.0% | |
| AATTATTTGAACCAGATGTG+TGG | - | chr4_4:31720380-31720399 | None:intergenic | 30.0% | |
| AGATCAAAACAATGTTTCGT+AGG | + | chr4_4:31720862-31720881 | Msa0677570:intron | 30.0% | |
| TTTAAATTCCACTGGCAAAT+AGG | - | chr4_4:31720905-31720924 | None:intergenic | 30.0% | |
| TTAAACTCCCATAACATAAG+GGG | + | chr4_4:31721271-31721290 | Msa0677570:intron | 30.0% | |
| TATTATAAAGTGGTGTAACC+AGG | + | chr4_4:31721362-31721381 | Msa0677570:intron | 30.0% | |
| AGATAAAAAATCAGAAGTCG+TGG | - | chr4_4:31721406-31721425 | None:intergenic | 30.0% | |
| GGTATAGGAGATTAATTACT+TGG | + | chr4_4:31721537-31721556 | Msa0677570:intron | 30.0% | |
| AGATTAATTACTTGGCTAGT+CGG | + | chr4_4:31721545-31721564 | Msa0677570:intron | 30.0% | |
| ATTGAAGTTTGAAGGATTTG+GGG | - | chr4_4:31721673-31721692 | None:intergenic | 30.0% | |
| CTATTGAAGTTTGAAGGATT+TGG | - | chr4_4:31721675-31721694 | None:intergenic | 30.0% | |
| CACATACTATTGAAGTTTGA+AGG | - | chr4_4:31721681-31721700 | None:intergenic | 30.0% | |
| TTCAATAGTATGTGCTAATG+TGG | + | chr4_4:31721687-31721706 | Msa0677570:intron | 30.0% | |
| AATGCAAGAAAGAACAGAAT+GGG | + | chr4_4:31721844-31721863 | Msa0677570:CDS | 30.0% | |
| ! | TTAGGATTAGCAAAACTCAA+AGG | - | chr4_4:31721993-31722012 | None:intergenic | 30.0% |
| CTGCATATCGTAATAAATGA+TGG | - | chr4_4:31722072-31722091 | None:intergenic | 30.0% | |
| CATCATTTATTACGATATGC+AGG | + | chr4_4:31722070-31722089 | Msa0677570:intron | 30.0% | |
| TGACGATTATGATTGATTGA+TGG | + | chr4_4:31722445-31722464 | Msa0677570:intron | 30.0% | |
| !! | CTGTTTTTCCATTTGCATAT+TGG | - | chr4_4:31722630-31722649 | None:intergenic | 30.0% |
| AGTTATGAACACATCTAACA+TGG | - | chr4_4:31722938-31722957 | None:intergenic | 30.0% | |
| !! | ATTTGATTTTGTTCCGATGA+TGG | + | chr4_4:31723169-31723188 | Msa0677570:intron | 30.0% |
| ! | ATTCATTTCCTTTGGTGATA+TGG | + | chr4_4:31723266-31723285 | Msa0677570:CDS | 30.0% |
| ! | TTCATTTCCTTTGGTGATAT+GGG | + | chr4_4:31723267-31723286 | Msa0677570:CDS | 30.0% |
| ! | ACATCTTCAATTTGAAGTGT+CGG | + | chr4_4:31723522-31723541 | Msa0677570:intron | 30.0% |
| CTGTTCAAATTCAATCAAGA+TGG | - | chr4_4:31723567-31723586 | None:intergenic | 30.0% | |
| TAATATCAACTGAACATGAC+TGG | + | chr4_4:31724030-31724049 | Msa0677570:CDS | 30.0% | |
| ! | TTTTACCTGCTCAGAATTTT+CGG | - | chr4_4:31724057-31724076 | None:intergenic | 30.0% |
| !! | TAGTTCAGTCTTTAAAGCAT+TGG | - | chr4_4:31724271-31724290 | None:intergenic | 30.0% |
| CAATTCAGTTATTATGGTTC+CGG | - | chr4_4:31724350-31724369 | None:intergenic | 30.0% | |
| ATTCAAACAGTTAAACCATC+TGG | + | chr4_4:31724389-31724408 | Msa0677570:intron | 30.0% | |
| TTTAGATGATAATCCGTTGT+TGG | - | chr4_4:31724505-31724524 | None:intergenic | 30.0% | |
| ! | ACTCCCTTTTGATCTTTTAT+AGG | - | chr4_4:31724741-31724760 | None:intergenic | 30.0% |
| CATTCATGGAATCCTCAAAT+TGG | + | chr4_4:31717881-31717900 | Msa0677570:exon | 35.0% | |
| TAGACATTGAAGGGCTAATA+AGG | - | chr4_4:31717942-31717961 | None:intergenic | 35.0% | |
| GGAAAGTTGTAGACATTGAA+GGG | - | chr4_4:31717951-31717970 | None:intergenic | 35.0% | |
| TTGAAAGACATCATAAGCTG+TGG | - | chr4_4:31718531-31718550 | None:intergenic | 35.0% | |
| CGGGGGGAAAATTAATAAAA+AGG | + | chr4_4:31718611-31718630 | Msa0677570:intron | 35.0% | |
| TTAATAAAAAGGGAGCAACG+AGG | + | chr4_4:31718622-31718641 | Msa0677570:intron | 35.0% | |
| ACGAGGATTCATGATATTGA+TGG | + | chr4_4:31718639-31718658 | Msa0677570:intron | 35.0% | |
| GATGGTTTCTAACAATAGCA+TGG | + | chr4_4:31718657-31718676 | Msa0677570:intron | 35.0% | |
| GAAGATAAGGTGGTTGAAAA+TGG | - | chr4_4:31718737-31718756 | None:intergenic | 35.0% | |
| AATTAACCTCGAAGATAAGG+TGG | - | chr4_4:31718747-31718766 | None:intergenic | 35.0% | |
| AAATATCCAAAGGTTGTGGT+GGG | - | chr4_4:31718770-31718789 | None:intergenic | 35.0% | |
| TAAATATCCAAAGGTTGTGG+TGG | - | chr4_4:31718771-31718790 | None:intergenic | 35.0% | |
| CCCTTGACAATACAAAATGA+TGG | - | chr4_4:31718842-31718861 | None:intergenic | 35.0% | |
| GTATATTGAAGGTGACAACT+TGG | - | chr4_4:31719046-31719065 | None:intergenic | 35.0% | |
| TGAAGATATACTTGGAGGAA+AGG | - | chr4_4:31719320-31719339 | None:intergenic | 35.0% | |
| GTGTATGAAGATATACTTGG+AGG | - | chr4_4:31719325-31719344 | None:intergenic | 35.0% | |
| AGCGTGTATGAAGATATACT+TGG | - | chr4_4:31719328-31719347 | None:intergenic | 35.0% | |
| AAGCAATACTCTCAATCACA+AGG | - | chr4_4:31719370-31719389 | None:intergenic | 35.0% | |
| TTTGATTGGGAGAACTAAGA+AGG | - | chr4_4:31719532-31719551 | None:intergenic | 35.0% | |
| CTTCTGACAGTATGTTTAAG+GGG | + | chr4_4:31719583-31719602 | Msa0677570:intron | 35.0% | |
| AAATCACTACCGTATACATG+AGG | + | chr4_4:31719790-31719809 | Msa0677570:intron | 35.0% | |
| ! | TTTGAGGTTCCTCATGTATA+CGG | - | chr4_4:31719802-31719821 | None:intergenic | 35.0% |
| !!! | TTTTTTTGGATGGTGGTTTG+AGG | - | chr4_4:31719818-31719837 | None:intergenic | 35.0% |
| !!! | TGGATGTTTTTTTTGGATGG+TGG | - | chr4_4:31719825-31719844 | None:intergenic | 35.0% |
| !!! | AGGTGGATGTTTTTTTTGGA+TGG | - | chr4_4:31719828-31719847 | None:intergenic | 35.0% |
| !!! | CTTTTGATTTTGGTGTTAGG+TGG | - | chr4_4:31719845-31719864 | None:intergenic | 35.0% |
| CACCTAACACCAAAATCAAA+AGG | + | chr4_4:31719843-31719862 | Msa0677570:intron | 35.0% | |
| !!! | GACCTTTTGATTTTGGTGTT+AGG | - | chr4_4:31719848-31719867 | None:intergenic | 35.0% |
| !!! | GAATTGGGACCTTTTGATTT+TGG | - | chr4_4:31719855-31719874 | None:intergenic | 35.0% |
| CAAAAGGTCCCAATTCTAAT+AGG | + | chr4_4:31719859-31719878 | Msa0677570:intron | 35.0% | |
| !!! | TTTTTTAGACCGATACCTTG+GGG | + | chr4_4:31719969-31719988 | Msa0677570:intron | 35.0% |
| TCAACCGATTAAGATTCACA+CGG | + | chr4_4:31720160-31720179 | Msa0677570:intron | 35.0% | |
| !!! | TGCTCTATGGATTTTGAGAT+TGG | - | chr4_4:31720285-31720304 | None:intergenic | 35.0% |
| AATGAGATAGTACCTGTCAT+AGG | + | chr4_4:31720752-31720771 | Msa0677570:intron | 35.0% | |
| TCAAAACAATGTTTCGTAGG+TGG | + | chr4_4:31720865-31720884 | Msa0677570:intron | 35.0% | |
| ATGTTTCGTAGGTGGAATAA+AGG | + | chr4_4:31720873-31720892 | Msa0677570:intron | 35.0% | |
| TACAATTGGCTGTTATGTGT+TGG | + | chr4_4:31721071-31721090 | Msa0677570:intron | 35.0% | |
| ACAATTGGCTGTTATGTGTT+GGG | + | chr4_4:31721072-31721091 | Msa0677570:intron | 35.0% | |
| ! | TGTCCTCTTTTATCTCTTTG+CGG | - | chr4_4:31721299-31721318 | None:intergenic | 35.0% |
| ! | TTTTGCAGCTCATGTAATCT+GGG | - | chr4_4:31721818-31721837 | None:intergenic | 35.0% |
| ! | TTTTTGCAGCTCATGTAATC+TGG | - | chr4_4:31721819-31721838 | None:intergenic | 35.0% |
| GAATGCAAGAAAGAACAGAA+TGG | + | chr4_4:31721843-31721862 | Msa0677570:CDS | 35.0% | |
| ATAGAGTTTGTGTTCTTCAC+TGG | + | chr4_4:31721930-31721949 | Msa0677570:CDS | 35.0% | |
| ATTAGCAAAACTCAAAGGAG+TGG | - | chr4_4:31721988-31722007 | None:intergenic | 35.0% | |
| ! | AATCCTAAGAAGCCACTTTA+TGG | + | chr4_4:31722005-31722024 | Msa0677570:CDS | 35.0% |
| CTTGAGATATGTCCATAAAG+TGG | - | chr4_4:31722020-31722039 | None:intergenic | 35.0% | |
| AGATAATTGCGGTCAAATGT+GGG | - | chr4_4:31722193-31722212 | None:intergenic | 35.0% | |
| !!! | AGGGTTTTAAATAGAGATCG+CGG | - | chr4_4:31722252-31722271 | None:intergenic | 35.0% |
| TAAACTCTTTCATGTTCGGT+TGG | - | chr4_4:31722312-31722331 | None:intergenic | 35.0% | |
| !! | TTTGCATATTGGATTTGCTG+AGG | - | chr4_4:31722619-31722638 | None:intergenic | 35.0% |
| CAGCAAATCCAATATGCAAA+TGG | + | chr4_4:31722619-31722638 | Msa0677570:CDS | 35.0% | |
| TTCATACCTTCCATATCTGT+AGG | - | chr4_4:31722911-31722930 | None:intergenic | 35.0% | |
| ! | AGACCACAATTTAGAACCAT+AGG | + | chr4_4:31723048-31723067 | Msa0677570:intron | 35.0% |
| GAGCTCAAATTCATTTCCTT+TGG | + | chr4_4:31723258-31723277 | Msa0677570:CDS | 35.0% | |
| TTCAGAAGAACACTACATTC+AGG | + | chr4_4:31723308-31723327 | Msa0677570:CDS | 35.0% | |
| ACGCATTAAGAAATGACTAG+TGG | + | chr4_4:31723378-31723397 | Msa0677570:intron | 35.0% | |
| TTGATTGAATTTGAACAGCC+TGG | + | chr4_4:31723569-31723588 | Msa0677570:intron | 35.0% | |
| GAACTCCAACAATGTAAACT+CGG | + | chr4_4:31723628-31723647 | Msa0677570:CDS | 35.0% | |
| AAACACCGAGTTTACATTGT+TGG | - | chr4_4:31723636-31723655 | None:intergenic | 35.0% | |
| !!! | AACTGGTTTTCTAGCAGAAT+GGG | + | chr4_4:31723679-31723698 | Msa0677570:CDS | 35.0% |
| TTGAAGCTACTGGACTAATA+AGG | - | chr4_4:31723718-31723737 | None:intergenic | 35.0% | |
| TATGAAACTCTTGAAGCTAC+TGG | - | chr4_4:31723728-31723747 | None:intergenic | 35.0% | |
| GTTTCATACATGACAGCAAT+CGG | + | chr4_4:31723740-31723759 | Msa0677570:CDS | 35.0% | |
| TTTCATACATGACAGCAATC+GGG | + | chr4_4:31723741-31723760 | Msa0677570:CDS | 35.0% | |
| !! | TTCAGAGATTATGTCGATTC+TGG | + | chr4_4:31723879-31723898 | Msa0677570:intron | 35.0% |
| GCAGTATAACTGGATGAAAA+AGG | + | chr4_4:31724163-31724182 | Msa0677570:intron | 35.0% | |
| TAACTGGATGAAAAAGGACA+TGG | + | chr4_4:31724169-31724188 | Msa0677570:CDS | 35.0% | |
| TTAATAGACAACGTACTCCT+TGG | + | chr4_4:31724198-31724217 | Msa0677570:intron | 35.0% | |
| !! | CAGTCTTTAAAGCATTGGTT+CGG | - | chr4_4:31724266-31724285 | None:intergenic | 35.0% |
| AACAGTTAAACCATCTGGTT+TGG | + | chr4_4:31724394-31724413 | Msa0677570:intron | 35.0% | |
| GTACATTGTGAACATGAAAC+AGG | + | chr4_4:31724638-31724657 | Msa0677570:intron | 35.0% | |
| TTCTCTCATAGTTATGCACA+TGG | - | chr4_4:31724683-31724702 | None:intergenic | 35.0% | |
| !! | AGAAAATGTGGCCTTGGTTT+TGG | - | chr4_4:31717791-31717810 | None:intergenic | 40.0% |
| AAAGGAAGAAAATGTGGCCT+TGG | - | chr4_4:31717797-31717816 | None:intergenic | 40.0% | |
| GGGAAAGTTGTAGACATTGA+AGG | - | chr4_4:31717952-31717971 | None:intergenic | 40.0% | |
| AACTTTCCCTTCCTCAACTT+TGG | + | chr4_4:31717963-31717982 | Msa0677570:CDS | 40.0% | |
| TAAGGTCCAAAGTTGAGGAA+GGG | - | chr4_4:31717972-31717991 | None:intergenic | 40.0% | |
| TTCCTCAACTTTGGACCTTA+CGG | + | chr4_4:31717972-31717991 | Msa0677570:CDS | 40.0% | |
| CTTTAGTGTGTGTAACCGTA+AGG | - | chr4_4:31717990-31718009 | None:intergenic | 40.0% | |
| TTTCAACCACCTTATCTTCG+AGG | + | chr4_4:31718738-31718757 | Msa0677570:intron | 40.0% | |
| GGGAATTAACCTCGAAGATA+AGG | - | chr4_4:31718750-31718769 | None:intergenic | 40.0% | |
| TTAATTCCCACCACAACCTT+TGG | + | chr4_4:31718761-31718780 | Msa0677570:intron | 40.0% | |
| !!! | CACATGTTTGGTTTTCTGGA+CGG | - | chr4_4:31719493-31719512 | None:intergenic | 40.0% |
| GTCCAGAAAACCAAACATGT+GGG | + | chr4_4:31719492-31719511 | Msa0677570:intron | 40.0% | |
| TCCAGAAAACCAAACATGTG+GGG | + | chr4_4:31719493-31719512 | Msa0677570:intron | 40.0% | |
| !! | CATGACCGTTTTTACGAATC+CGG | + | chr4_4:31719629-31719648 | Msa0677570:intron | 40.0% |
| TAGTACCTAGTGGTACTACT+GGG | + | chr4_4:31719933-31719952 | Msa0677570:intron | 40.0% | |
| TGCAAACCACTCAATGAAAC+TGG | - | chr4_4:31719999-31720018 | None:intergenic | 40.0% | |
| !! | AATGGATTGGTTCAGATGGA+GGG | - | chr4_4:31720037-31720056 | None:intergenic | 40.0% |
| !! | TGACAATGGATTGGTTCAGA+TGG | - | chr4_4:31720041-31720060 | None:intergenic | 40.0% |
| AGATTCACACGGTATATGCA+TGG | + | chr4_4:31720171-31720190 | Msa0677570:intron | 40.0% | |
| TGATGTCTTCATCAATGCAG+TGG | + | chr4_4:31720334-31720353 | Msa0677570:intron | 40.0% | |
| GATGTCTTCATCAATGCAGT+GGG | + | chr4_4:31720335-31720354 | Msa0677570:intron | 40.0% | |
| ATGTCTTCATCAATGCAGTG+GGG | + | chr4_4:31720336-31720355 | Msa0677570:intron | 40.0% | |
| ACCAGATGTGTGGATATTGA+GGG | - | chr4_4:31720370-31720389 | None:intergenic | 40.0% | |
| AACCAGATGTGTGGATATTG+AGG | - | chr4_4:31720371-31720390 | None:intergenic | 40.0% | |
| ! | GTGCTATTGAGATCGTAATG+AGG | - | chr4_4:31720525-31720544 | None:intergenic | 40.0% |
| AGATAGTACCTGTCATAGGA+GGG | + | chr4_4:31720756-31720775 | Msa0677570:intron | 40.0% | |
| GGTATATTCCTATTTGCCAG+TGG | + | chr4_4:31720894-31720913 | Msa0677570:intron | 40.0% | |
| TGTAACCAGGACAAACCAAA+GGG | + | chr4_4:31721375-31721394 | Msa0677570:intron | 40.0% | |
| GAAGGATTTGGGGAATCATA+AGG | - | chr4_4:31721663-31721682 | None:intergenic | 40.0% | |
| TGTCCATAAAGTGGCTTCTT+AGG | - | chr4_4:31722011-31722030 | None:intergenic | 40.0% | |
| !!! | GGGTTTTAAATAAAGGTCCG+CGG | + | chr4_4:31722091-31722110 | Msa0677570:intron | 40.0% |
| AAACTTGGGCCGCAATATAA+CGG | + | chr4_4:31722118-31722137 | Msa0677570:intron | 40.0% | |
| CAGATAATTGCGGTCAAATG+TGG | - | chr4_4:31722194-31722213 | None:intergenic | 40.0% | |
| CCTTAGACTGCAGATAATTG+CGG | - | chr4_4:31722204-31722223 | None:intergenic | 40.0% | |
| CGCAATTATCTGCAGTCTAA+GGG | + | chr4_4:31722202-31722221 | Msa0677570:intron | 40.0% | |
| GATTTGTGATTTCGAGACTG+TGG | - | chr4_4:31722366-31722385 | None:intergenic | 40.0% | |
| !! | TGTATGCGTGGTCATTTTGT+CGG | - | chr4_4:31722523-31722542 | None:intergenic | 40.0% |
| ! | AGATTCTGATGATGTATGCG+TGG | - | chr4_4:31722535-31722554 | None:intergenic | 40.0% |
| TGTTGCAGATGAGATTGACA+TGG | + | chr4_4:31722575-31722594 | Msa0677570:intron | 40.0% | |
| GTTGCAGATGAGATTGACAT+GGG | + | chr4_4:31722576-31722595 | Msa0677570:intron | 40.0% | |
| !! | ATGAGATTGACATGGGTTAG+TGG | + | chr4_4:31722583-31722602 | Msa0677570:CDS | 40.0% |
| !! | TGAGATTGACATGGGTTAGT+GGG | + | chr4_4:31722584-31722603 | Msa0677570:CDS | 40.0% |
| ATCATGCCATCCAAAATCCT+TGG | - | chr4_4:31722833-31722852 | None:intergenic | 40.0% | |
| ATCCATTCAGCACTTATGAC+TGG | + | chr4_4:31722862-31722881 | Msa0677570:CDS | 40.0% | |
| TAAAATGTGATCACGATCGC+TGG | + | chr4_4:31723021-31723040 | Msa0677570:intron | 40.0% | |
| ! | CCACAATTTAGAACCATAGG+CGG | + | chr4_4:31723051-31723070 | Msa0677570:intron | 40.0% |
| ! | CACAATTTAGAACCATAGGC+GGG | + | chr4_4:31723052-31723071 | Msa0677570:intron | 40.0% |
| CCGATTTACTAGACCATCAT+CGG | - | chr4_4:31723185-31723204 | None:intergenic | 40.0% | |
| ! | CCGATGATGGTCTAGTAAAT+CGG | + | chr4_4:31723182-31723201 | Msa0677570:intron | 40.0% |
| AGCTGGTGGAGTTGAAAATT+TGG | - | chr4_4:31723226-31723245 | None:intergenic | 40.0% | |
| ! | AAATTTTCAACTCCACCAGC+TGG | + | chr4_4:31723225-31723244 | Msa0677570:CDS | 40.0% |
| ! | GGTTTTTCCCATATCACCAA+AGG | - | chr4_4:31723277-31723296 | None:intergenic | 40.0% |
| !! | TTCTTCTGAAGCATCAAGAG+GGG | - | chr4_4:31723298-31723317 | None:intergenic | 40.0% |
| !! | GTTCTTCTGAAGCATCAAGA+GGG | - | chr4_4:31723299-31723318 | None:intergenic | 40.0% |
| !! | TGTTCTTCTGAAGCATCAAG+AGG | - | chr4_4:31723300-31723319 | None:intergenic | 40.0% |
| AGTGGTGAACTATGAAGCAT+TGG | + | chr4_4:31723396-31723415 | Msa0677570:intron | 40.0% | |
| !! | GTAAACTCGGTGTTTCACAT+TGG | + | chr4_4:31723641-31723660 | Msa0677570:CDS | 40.0% |
| GGAGACATAAGTTATGCAAC+TGG | + | chr4_4:31723662-31723681 | Msa0677570:CDS | 40.0% | |
| !!! | CAACTGGTTTTCTAGCAGAA+TGG | + | chr4_4:31723678-31723697 | Msa0677570:CDS | 40.0% |
| GTTTATGTTACTCCTGACTC+TGG | + | chr4_4:31723906-31723925 | Msa0677570:CDS | 40.0% | |
| CCTTGTTCAATTGAGTACCA+AGG | - | chr4_4:31723993-31724012 | None:intergenic | 40.0% | |
| CCTTGGTACTCAATTGAACA+AGG | + | chr4_4:31723990-31724009 | Msa0677570:CDS | 40.0% | |
| !! | TACTCCTTGGCTGATTTTCA+TGG | + | chr4_4:31724211-31724230 | Msa0677570:intron | 40.0% |
| !! | ACTCCTTGGCTGATTTTCAT+GGG | + | chr4_4:31724212-31724231 | Msa0677570:intron | 40.0% |
| AACTAGACAACAAACTCGTG+AGG | + | chr4_4:31724286-31724305 | Msa0677570:intron | 40.0% | |
| TATTATGGTTCCGGTTCAAG+CGG | - | chr4_4:31724341-31724360 | None:intergenic | 40.0% | |
| AAATGCTGAACCAAACCAGA+TGG | - | chr4_4:31724407-31724426 | None:intergenic | 40.0% | |
| CCAATGTACACTTCCAACAA+CGG | + | chr4_4:31724489-31724508 | Msa0677570:intron | 40.0% | |
| ! | GCCATTGCTGTTACAGAATA+AGG | + | chr4_4:31724551-31724570 | Msa0677570:intron | 40.0% |
| ! | GCCTTATTCTGTAACAGCAA+TGG | - | chr4_4:31724555-31724574 | None:intergenic | 40.0% |
| ! | GAACATGAAACAGGTTGACT+TGG | + | chr4_4:31724647-31724666 | Msa0677570:intron | 40.0% |
| !!! | CAGGTTGACTTGGTTCTTTT+TGG | + | chr4_4:31724657-31724676 | Msa0677570:intron | 40.0% |
| GTAAGGTCCAAAGTTGAGGA+AGG | - | chr4_4:31717973-31717992 | None:intergenic | 45.0% | |
| AACCGTAAGGTCCAAAGTTG+AGG | - | chr4_4:31717977-31717996 | None:intergenic | 45.0% | |
| GAAACCGAGAGATGGAGATT+GGG | + | chr4_4:31718170-31718189 | Msa0677570:CDS | 45.0% | |
| GACATACCTTGACAGGGTAA+TGG | - | chr4_4:31718373-31718392 | None:intergenic | 45.0% | |
| GTGCATGACATACCTTGACA+GGG | - | chr4_4:31718379-31718398 | None:intergenic | 45.0% | |
| TGTGCATGACATACCTTGAC+AGG | - | chr4_4:31718380-31718399 | None:intergenic | 45.0% | |
| TACTTGGAGGAAAGGCTATG+TGG | - | chr4_4:31719312-31719331 | None:intergenic | 45.0% | |
| CGTCCAGAAAACCAAACATG+TGG | + | chr4_4:31719491-31719510 | Msa0677570:intron | 45.0% | |
| CCAGAAAACCAAACATGTGG+GGG | + | chr4_4:31719494-31719513 | Msa0677570:intron | 45.0% | |
| CAGAAAACCAAACATGTGGG+GGG | + | chr4_4:31719495-31719514 | Msa0677570:intron | 45.0% | |
| CGGTCATGCTCAGATGAATA+TGG | - | chr4_4:31719617-31719636 | None:intergenic | 45.0% | |
| AGCCTCCGGATTCGTAAAAA+CGG | - | chr4_4:31719637-31719656 | None:intergenic | 45.0% | |
| ! | TTTTTACGAATCCGGAGGCT+CGG | + | chr4_4:31719637-31719656 | Msa0677570:intron | 45.0% |
| AGTGGAAATCTGGGAAGTAG+TGG | + | chr4_4:31719908-31719927 | Msa0677570:intron | 45.0% | |
| GTGGAAATCTGGGAAGTAGT+GGG | + | chr4_4:31719909-31719928 | Msa0677570:intron | 45.0% | |
| TGGAAATCTGGGAAGTAGTG+GGG | + | chr4_4:31719910-31719929 | Msa0677570:intron | 45.0% | |
| GTAGTACCTAGTGGTACTAC+TGG | + | chr4_4:31719932-31719951 | Msa0677570:intron | 45.0% | |
| TATAGCCCAGTAGTACCACT+AGG | - | chr4_4:31719941-31719960 | None:intergenic | 45.0% | |
| !! | CAATGGATTGGTTCAGATGG+AGG | - | chr4_4:31720038-31720057 | None:intergenic | 45.0% |
| !! | CGTCGACTTAAACTGCTCTA+TGG | - | chr4_4:31720298-31720317 | None:intergenic | 45.0% |
| ACCCTCAATATCCACACATC+TGG | + | chr4_4:31720366-31720385 | Msa0677570:intron | 45.0% | |
| GAGATAGTACCTGTCATAGG+AGG | + | chr4_4:31720755-31720774 | Msa0677570:intron | 45.0% | |
| GTGCCGCAAAGAGATAAAAG+AGG | + | chr4_4:31721293-31721312 | Msa0677570:intron | 45.0% | |
| GTGTAACCAGGACAAACCAA+AGG | + | chr4_4:31721374-31721393 | Msa0677570:intron | 45.0% | |
| TGCAGTGTGACAACTTGTAG+TGG | + | chr4_4:31721870-31721889 | Msa0677570:CDS | 45.0% | |
| GAGTTTGTGTTCTTCACTGG+TGG | + | chr4_4:31721933-31721952 | Msa0677570:CDS | 45.0% | |
| ATGTGACGCACTTGCAAATG+AGG | + | chr4_4:31722159-31722178 | Msa0677570:intron | 45.0% | |
| CCGCAATTATCTGCAGTCTA+AGG | + | chr4_4:31722201-31722220 | Msa0677570:intron | 45.0% | |
| !! | GGTCATTTTGTCGGTATGTG+TGG | - | chr4_4:31722514-31722533 | None:intergenic | 45.0% |
| !! | GAGATTGACATGGGTTAGTG+GGG | + | chr4_4:31722585-31722604 | Msa0677570:CDS | 45.0% |
| ! | GATTTTGGATGGCATGATCC+AGG | + | chr4_4:31722835-31722854 | Msa0677570:CDS | 45.0% |
| ! | AGTGCTGAATGGATGAATCC+TGG | - | chr4_4:31722856-31722875 | None:intergenic | 45.0% |
| !! | GTCCAGTCATAAGTGCTGAA+TGG | - | chr4_4:31722867-31722886 | None:intergenic | 45.0% |
| AGTGCCTACTCCTACAGATA+TGG | + | chr4_4:31722898-31722917 | Msa0677570:CDS | 45.0% | |
| CCTTCCATATCTGTAGGAGT+AGG | - | chr4_4:31722905-31722924 | None:intergenic | 45.0% | |
| CCTACTCCTACAGATATGGA+AGG | + | chr4_4:31722902-31722921 | Msa0677570:CDS | 45.0% | |
| !! | CCGCCTATGGTTCTAAATTG+TGG | - | chr4_4:31723054-31723073 | None:intergenic | 45.0% |
| GGTCTAGTAAATCGGCTGAT+TGG | + | chr4_4:31723190-31723209 | Msa0677570:intron | 45.0% | |
| ! | TTGATAACCGATAGTGCTCC+AGG | - | chr4_4:31723590-31723609 | None:intergenic | 45.0% |
| TATGTTACTCCTGACTCTGG+TGG | + | chr4_4:31723909-31723928 | Msa0677570:CDS | 45.0% | |
| !! | CTCCTTGGCTGATTTTCATG+GGG | + | chr4_4:31724213-31724232 | Msa0677570:intron | 45.0% |
| TACCCCATGAAAATCAGCCA+AGG | - | chr4_4:31724218-31724237 | None:intergenic | 45.0% | |
| ! | CCGTTGTTGGAAGTGTACAT+TGG | - | chr4_4:31724492-31724511 | None:intergenic | 45.0% |
| ATGCCAATGACAGCATGTAC+AGG | - | chr4_4:31724795-31724814 | None:intergenic | 45.0% | |
| TGTACATGCTGTCATTGGCA+TGG | + | chr4_4:31724794-31724813 | Msa0677570:CDS | 45.0% | |
| !!! | TTTCAAATTATTATTTTTTT+TGG | + | chr4_4:31718545-31718564 | Msa0677570:intron | 5.0% |
| GTCGGATGAGGAGTTTGTCA+CGG | + | chr4_4:31718128-31718147 | Msa0677570:CDS | 50.0% | |
| TTTGTCACGGTTACCGTCAC+CGG | + | chr4_4:31718141-31718160 | Msa0677570:CDS | 50.0% | |
| ATCTCTCGGTTTCGAAACGC+CGG | - | chr4_4:31718163-31718182 | None:intergenic | 50.0% | |
| CGAAACCGAGAGATGGAGAT+TGG | + | chr4_4:31718169-31718188 | Msa0677570:CDS | 50.0% | |
| ! | ACAGGGTAATGGCAAAGCAG+AGG | - | chr4_4:31718362-31718381 | None:intergenic | 50.0% |
| GCTTTGCCATTACCCTGTCA+AGG | + | chr4_4:31718364-31718383 | Msa0677570:CDS | 50.0% | |
| CTCGAGGAGGCTTCATTTAG+AGG | + | chr4_4:31719142-31719161 | Msa0677570:intron | 50.0% | |
| !!! | CCCCCACATGTTTGGTTTTC+TGG | - | chr4_4:31719497-31719516 | None:intergenic | 50.0% |
| ATATGTGCCCCCCACATGTT+TGG | - | chr4_4:31719505-31719524 | None:intergenic | 50.0% | |
| !! | GACCGTTTTTACGAATCCGG+AGG | + | chr4_4:31719632-31719651 | Msa0677570:intron | 50.0% |
| ! | AGTAGTGGGGTAGTACCTAG+TGG | + | chr4_4:31719923-31719942 | Msa0677570:intron | 50.0% |
| TTTAGACCGATACCTTGGGG+AGG | + | chr4_4:31719972-31719991 | Msa0677570:intron | 50.0% | |
| AATGAAACTGGACCTCCCCA+AGG | - | chr4_4:31719987-31720006 | None:intergenic | 50.0% | |
| GGAGGTCCAGTTTCATTGAG+TGG | + | chr4_4:31719990-31720009 | Msa0677570:intron | 50.0% | |
| TACCTGTCATAGGAGGGACA+TGG | + | chr4_4:31720762-31720781 | Msa0677570:intron | 50.0% | |
| TGCGGCACCCCTTATGTTAT+GGG | - | chr4_4:31721281-31721300 | None:intergenic | 50.0% | |
| TTGCGGCACCCCTTATGTTA+TGG | - | chr4_4:31721282-31721301 | None:intergenic | 50.0% | |
| ACCAGGACAAACCAAAGGGT+TGG | + | chr4_4:31721379-31721398 | Msa0677570:intron | 50.0% | |
| !! | TCCAACCCTTTGGTTTGTCC+TGG | - | chr4_4:31721383-31721402 | None:intergenic | 50.0% |
| AAGGAGTGGACCTTCCAACA+AGG | - | chr4_4:31721974-31721993 | None:intergenic | 50.0% | |
| AAGGTCCGCGGTTTCAAACT+TGG | + | chr4_4:31722103-31722122 | Msa0677570:intron | 50.0% | |
| AGGTCCGCGGTTTCAAACTT+GGG | + | chr4_4:31722104-31722123 | Msa0677570:intron | 50.0% | |
| CCAAAATCCTTGGCAGGACT+AGG | - | chr4_4:31722823-31722842 | None:intergenic | 50.0% | |
| ! | CCTAGTCCTGCCAAGGATTT+TGG | + | chr4_4:31722820-31722839 | Msa0677570:CDS | 50.0% |
| ! | GTCCTGCCAAGGATTTTGGA+TGG | + | chr4_4:31722824-31722843 | Msa0677570:CDS | 50.0% |
| TGCCATCCAAAATCCTTGGC+AGG | - | chr4_4:31722829-31722848 | None:intergenic | 50.0% | |
| CTGTAGGAGTAGGCACTTGA+TGG | - | chr4_4:31722895-31722914 | None:intergenic | 50.0% | |
| !! | ACCATAGGCGGGCTATTGAA+TGG | + | chr4_4:31723063-31723082 | Msa0677570:intron | 50.0% |
| TCCATTCAATAGCCCGCCTA+TGG | - | chr4_4:31723067-31723086 | None:intergenic | 50.0% | |
| ! | TTTTCAACTCCACCAGCTGG+AGG | + | chr4_4:31723228-31723247 | Msa0677570:CDS | 50.0% |
| ! | TGAACAGCCTGGAGCACTAT+CGG | + | chr4_4:31723580-31723599 | Msa0677570:intron | 50.0% |
| CAGCAATCGGGAATCATGAG+AGG | + | chr4_4:31723753-31723772 | Msa0677570:CDS | 50.0% | |
| TCCAATGCCAACTGCAGCAA+AGG | + | chr4_4:31723962-31723981 | Msa0677570:CDS | 50.0% | |
| TCCTTTGCTGCAGTTGGCAT+TGG | - | chr4_4:31723966-31723985 | None:intergenic | 50.0% | |
| GGCTTATCCTTTGCTGCAGT+TGG | - | chr4_4:31723972-31723991 | None:intergenic | 50.0% | |
| CTGCAGCAAAGGATAAGCCT+TGG | + | chr4_4:31723973-31723992 | Msa0677570:CDS | 50.0% | |
| CTGGTCCGAAAATTCTGAGC+AGG | + | chr4_4:31724049-31724068 | Msa0677570:CDS | 50.0% | |
| CAACAAACTCGTGAGGCCTA+TGG | + | chr4_4:31724293-31724312 | Msa0677570:intron | 50.0% | |
| GTGGCTGAACCTTGATCCAT+AGG | - | chr4_4:31724312-31724331 | None:intergenic | 50.0% | |
| CCACCTTTAACCGCTTGAAC+CGG | + | chr4_4:31724328-31724347 | Msa0677570:intron | 50.0% | |
| GTTCCGGTTCAAGCGGTTAA+AGG | - | chr4_4:31724334-31724353 | None:intergenic | 50.0% | |
| GCTCCTGTACATGCTGTCAT+TGG | + | chr4_4:31724789-31724808 | Msa0677570:CDS | 50.0% | |
| GGCGTTTCGAAACCGAGAGA+TGG | + | chr4_4:31718162-31718181 | Msa0677570:CDS | 55.0% | |
| ACCGAGAGATGGAGATTGGG+TGG | + | chr4_4:31718173-31718192 | Msa0677570:CDS | 55.0% | |
| GCCACCCAATCTCCATCTCT+CGG | - | chr4_4:31718177-31718196 | None:intergenic | 55.0% | |
| CACTTACAGAACCGAGCCTC+CGG | - | chr4_4:31719651-31719670 | None:intergenic | 55.0% | |
| ACTGGACCTCCCCAAGGTAT+CGG | - | chr4_4:31719981-31720000 | None:intergenic | 55.0% | |
| ! | TGAGTGGTTTGCACACCCCA+AGG | + | chr4_4:31720006-31720025 | Msa0677570:intron | 55.0% |
| ! | GATTGGTTCAGATGGAGGGC+CGG | - | chr4_4:31720033-31720052 | None:intergenic | 55.0% |
| CATCAATGCAGTGGGGACTC+TGG | + | chr4_4:31720343-31720362 | Msa0677570:intron | 55.0% | |
| GTCCATGTCCCTCCTATGAC+AGG | - | chr4_4:31720767-31720786 | None:intergenic | 55.0% | |
| GAAGTCGTGGTCCAACCCTT+TGG | - | chr4_4:31721393-31721412 | None:intergenic | 55.0% | |
| TTTCTCAGCCCCTGCCTTGT+TGG | + | chr4_4:31721957-31721976 | Msa0677570:CDS | 55.0% | |
| TGGACCTTCCAACAAGGCAG+GGG | - | chr4_4:31721968-31721987 | None:intergenic | 55.0% | |
| GTGGACCTTCCAACAAGGCA+GGG | - | chr4_4:31721969-31721988 | None:intergenic | 55.0% | |
| AGTGGACCTTCCAACAAGGC+AGG | - | chr4_4:31721970-31721989 | None:intergenic | 55.0% | |
| !! | GACATGGGTTAGTGGGGACA+AGG | + | chr4_4:31722591-31722610 | Msa0677570:CDS | 55.0% |
| AGTAGTGCCTAGTCCTGCCA+AGG | + | chr4_4:31722813-31722832 | Msa0677570:CDS | 55.0% | |
| TCATCTGATCCTCCAGCTGG+TGG | - | chr4_4:31723240-31723259 | None:intergenic | 55.0% | |
| AGCTCATCTGATCCTCCAGC+TGG | - | chr4_4:31723243-31723262 | None:intergenic | 55.0% | |
| ! | CCTGACTCTGGTGGTGAATG+CGG | + | chr4_4:31723918-31723937 | Msa0677570:CDS | 55.0% |
| CTCGTGAGGCCTATGGATCA+AGG | + | chr4_4:31724300-31724319 | Msa0677570:intron | 55.0% | |
| CCGGTTCAAGCGGTTAAAGG+TGG | - | chr4_4:31724331-31724350 | None:intergenic | 55.0% | |
| CATGCTGTCATTGGCATGGC+TGG | + | chr4_4:31724798-31724817 | Msa0677570:CDS | 55.0% | |
| CGGTTTCGAAACGCCGGTGA+CGG | - | chr4_4:31718157-31718176 | None:intergenic | 60.0% | |
| GGTTTGCACACCCCAAGGTC+CGG | + | chr4_4:31720011-31720030 | Msa0677570:intron | 60.0% | |
| ! | TCAGCCCCTGCCTTGTTGGA+AGG | + | chr4_4:31721961-31721980 | Msa0677570:CDS | 60.0% |
| ! | GCGGCCCAAGTTTGAAACCG+CGG | - | chr4_4:31722111-31722130 | None:intergenic | 60.0% |
| CCGCATTCACCACCAGAGTC+AGG | - | chr4_4:31723921-31723940 | None:intergenic | 60.0% | |
| AGATGGAGGGCCGGACCTTG+GGG | - | chr4_4:31720024-31720043 | None:intergenic | 65.0% | |
| CAGATGGAGGGCCGGACCTT+GGG | - | chr4_4:31720025-31720044 | None:intergenic | 65.0% | |
| TCAGATGGAGGGCCGGACCT+TGG | - | chr4_4:31720026-31720045 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 31717726 | 31724848 | 31717726 | ID=Msa0677570;Name=Msa0677570 |
| chr4_4 | mRNA | 31717726 | 31724848 | 31717726 | ID=Msa0677570-mRNA-1;Parent=Msa0677570;Name=Msa0677570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=160|0.88|0.8|1|1|1|10|0|547 |
| chr4_4 | exon | 31717726 | 31718220 | 31717726 | ID=Msa0677570-mRNA-1:exon:7837;Parent=Msa0677570-mRNA-1 |
| chr4_4 | exon | 31718298 | 31718385 | 31718298 | ID=Msa0677570-mRNA-1:exon:7838;Parent=Msa0677570-mRNA-1 |
| chr4_4 | exon | 31721795 | 31722061 | 31721795 | ID=Msa0677570-mRNA-1:exon:7839;Parent=Msa0677570-mRNA-1 |
| chr4_4 | exon | 31722583 | 31722691 | 31722583 | ID=Msa0677570-mRNA-1:exon:7840;Parent=Msa0677570-mRNA-1 |
| chr4_4 | exon | 31722809 | 31722923 | 31722809 | ID=Msa0677570-mRNA-1:exon:7841;Parent=Msa0677570-mRNA-1 |
| chr4_4 | exon | 31723197 | 31723329 | 31723197 | ID=Msa0677570-mRNA-1:exon:7842;Parent=Msa0677570-mRNA-1 |
| chr4_4 | exon | 31723587 | 31723774 | 31723587 | ID=Msa0677570-mRNA-1:exon:7843;Parent=Msa0677570-mRNA-1 |
| chr4_4 | exon | 31723884 | 31724070 | 31723884 | ID=Msa0677570-mRNA-1:exon:7844;Parent=Msa0677570-mRNA-1 |
| chr4_4 | exon | 31724167 | 31724196 | 31724167 | ID=Msa0677570-mRNA-1:exon:7845;Parent=Msa0677570-mRNA-1 |
| chr4_4 | exon | 31724660 | 31724848 | 31724660 | ID=Msa0677570-mRNA-1:exon:7846;Parent=Msa0677570-mRNA-1 |
| chr4_4 | five_prime_UTR | 31717726 | 31717885 | 31717726 | ID=Msa0677570-mRNA-1:five_prime_utr;Parent=Msa0677570-mRNA-1 |
| chr4_4 | CDS | 31717886 | 31718220 | 31717886 | ID=Msa0677570-mRNA-1:cds;Parent=Msa0677570-mRNA-1 |
| chr4_4 | CDS | 31718298 | 31718385 | 31718298 | ID=Msa0677570-mRNA-1:cds;Parent=Msa0677570-mRNA-1 |
| chr4_4 | CDS | 31721795 | 31722061 | 31721795 | ID=Msa0677570-mRNA-1:cds;Parent=Msa0677570-mRNA-1 |
| chr4_4 | CDS | 31722583 | 31722691 | 31722583 | ID=Msa0677570-mRNA-1:cds;Parent=Msa0677570-mRNA-1 |
| chr4_4 | CDS | 31722809 | 31722923 | 31722809 | ID=Msa0677570-mRNA-1:cds;Parent=Msa0677570-mRNA-1 |
| chr4_4 | CDS | 31723197 | 31723329 | 31723197 | ID=Msa0677570-mRNA-1:cds;Parent=Msa0677570-mRNA-1 |
| chr4_4 | CDS | 31723587 | 31723774 | 31723587 | ID=Msa0677570-mRNA-1:cds;Parent=Msa0677570-mRNA-1 |
| chr4_4 | CDS | 31723884 | 31724070 | 31723884 | ID=Msa0677570-mRNA-1:cds;Parent=Msa0677570-mRNA-1 |
| chr4_4 | CDS | 31724167 | 31724196 | 31724167 | ID=Msa0677570-mRNA-1:cds;Parent=Msa0677570-mRNA-1 |
| chr4_4 | CDS | 31724660 | 31724848 | 31724660 | ID=Msa0677570-mRNA-1:cds;Parent=Msa0677570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
