AlfalfaGEDB | Msa0113040

M. sativa cultivar zhongmu-4 / Msa0113040

KEGG: K19355
GO: GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0032501 GO:0032502 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0048856 GO:0071554 GO:0071704 GO:0090351 GO:1901575
PFAM: PF00150.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0113040	XP_039685617.1	96.891	193	6	0	1	193	39	231	9.98e-135	394

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0113040	sp\|Q9LZV3\|MAN6_ARATH	80.628	191	37	0	3	193	42	232	7.36e-116	339

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0113040	G7LAQ6	96.891	193	6	0	1	193	56	248	7.78e-135	394

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044420	Msa0113040	0.859070	5.332719e-63	-8.615850e-47
Msa0090700	Msa0113040	0.885815	5.871641e-72	-8.615850e-47
Msa0113040	Msa0183550	0.931253	4.965564e-94	-8.615850e-47
Msa0113040	Msa0909120	0.817176	3.776681e-52	-8.615850e-47
Msa0113040	Msa1248270	0.808944	2.414791e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0113040	MtrunA17_Chr8g0334501	96.891	193	6	0	1	193	55	247	1.58e-138	394
Msa0113040	MtrunA17_Chr7g0245051	87.047	193	25	0	1	193	52	244	3.62e-126	363
Msa0113040	MtrunA17_Chr7g0245101	81.865	193	35	0	1	193	53	245	5.41e-118	342
Msa0113040	MtrunA17_Chr7g0271511	59.677	186	75	0	8	193	62	247	1.47e-81	248
Msa0113040	MtrunA17_Chr4g0040121	56.477	193	83	1	2	193	33	225	3.79e-80	244
Msa0113040	MtrunA17_Chr1g0193531	59.459	185	74	1	9	193	30	213	5.93e-80	243
Msa0113040	MtrunA17_Chr4g0020521	56.522	184	80	0	9	192	35	218	1.13e-79	243
Msa0113040	MtrunA17_Chr1g0193611	57.838	185	78	0	9	193	33	217	3.65e-79	241
Msa0113040	MtrunA17_Chr5g0404601	58.824	187	76	1	8	193	31	217	2.69e-78	240
Msa0113040	MtrunA17_Chr1g0193551	58.065	186	77	1	8	193	35	219	5.50e-78	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0113040	AT5G01930.1	80.628	191	37	0	3	193	42	232	7.48e-117	339
Msa0113040	AT3G10900.1	54.595	185	83	1	9	192	30	214	1.21e-74	230
Msa0113040	AT4G28320.1	55.080	187	83	1	8	193	41	227	3.32e-73	227
Msa0113040	AT2G20680.1	54.688	192	86	1	3	193	37	228	7.54e-73	226
Msa0113040	AT3G10890.1	51.630	184	89	0	9	192	32	215	1.78e-72	225
Msa0113040	AT5G66460.1	52.151	186	89	0	8	193	31	216	2.53e-72	225
Msa0113040	AT1G02310.1	51.596	188	84	3	8	193	29	211	1.00e-64	205
Msa0113040	AT1G02310.2	51.872	187	83	3	9	193	50	231	1.53e-64	205
Msa0113040	AT3G30540.1	42.391	184	69	1	9	192	30	176	2.53e-49	163

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Find 52 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCACAGTATGTCAAGTG+GGG	0.694927	1_3:+28732459	Msa0113040:CDS
AAAGTGATGGTGATTTCTGA+AGG	0.556976	1_3:-28732329	None:intergenic
AACAATTGGGAGGCATATGG+TGG	0.626650	1_3:+28732435	Msa0113040:CDS
AACTCTCAGAGGCTACTACA+AGG	0.578621	1_3:+28732533	Msa0113040:CDS
AAGTGATGGTGATTTCTGAA+GGG	0.650216	1_3:-28732328	None:intergenic
AATCAGACTCATATTATCAT+TGG	0.419663	1_3:+28732410	Msa0113040:CDS
ACAAACTGTCATACCAACTG+AGG	0.663360	1_3:-28732271	None:intergenic
ACTACTTCATCATAAAGTGA+TGG	0.615191	1_3:-28732342	None:intergenic
ACTCACAAATATCACTTATA+AGG	0.349810	1_3:+28732686	Msa0113040:CDS
AGGACTTGGGCCTTCAATGA+TGG	0.488912	1_3:+28732294	Msa0113040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATCCATTGACATAGAA+AGG	-	chr1_3:28732177-28732196	None:intergenic	30.0%
ACTACTTCATCATAAAGTGA+TGG	-	chr1_3:28732345-28732364	None:intergenic	30.0%
GGAAACCAATTTGTAGTGAA+TGG	+	chr1_3:28732147-28732166	Msa0113040:CDS	35.0%
ATCCATTGACATAGAAAGGT+TGG	-	chr1_3:28732173-28732192	None:intergenic	35.0%
TATGACAGTTTGTAGGACTT+GGG	+	chr1_3:28732281-28732300	Msa0113040:CDS	35.0%
TGAGAAAAAGTCATCATCAG+AGG	-	chr1_3:28732508-28732527	None:intergenic	35.0%
GTTGGCCATTCACTACAAAT+TGG	-	chr1_3:28732155-28732174	None:intergenic	40.0%
TTCAAACATGCATCCTCAGT+TGG	+	chr1_3:28732258-28732277	Msa0113040:CDS	40.0%
ACAAACTGTCATACCAACTG+AGG	-	chr1_3:28732274-28732293	None:intergenic	40.0%
GTATGACAGTTTGTAGGACT+TGG	+	chr1_3:28732280-28732299	Msa0113040:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	28732111	28732785	28732111	ID=Msa0113040;Name=Msa0113040
chr1_3	mRNA	28732111	28732785	28732111	ID=Msa0113040-mRNA-1;Parent=Msa0113040;Name=Msa0113040-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0\|0\|1\|1\|1\|2\|0\|193
chr1_3	exon	28732111	28732566	28732111	ID=Msa0113040-mRNA-1:exon:9481;Parent=Msa0113040-mRNA-1
chr1_3	exon	28732663	28732785	28732663	ID=Msa0113040-mRNA-1:exon:9482;Parent=Msa0113040-mRNA-1
chr1_3	CDS	28732111	28732566	28732111	ID=Msa0113040-mRNA-1:cds;Parent=Msa0113040-mRNA-1
chr1_3	CDS	28732663	28732785	28732663	ID=Msa0113040-mRNA-1:cds;Parent=Msa0113040-mRNA-1

Gene Sequence

>Msa0113040

ATGGAGGAAGATGAATGGCAGATGGTGCAAAAGAAAGGAAACCAATTTGTAGTGAATGGCCAACCTTTCTATGTCAATGGATTCAACACTTATTGGTTGATGGTATTTGCTGCGGATGAGTCGACAAGAGGAAGGGTCACTCAGGTGTTCAAACATGCATCCTCAGTTGGTATGACAGTTTGTAGGACTTGGGCCTTCAATGATGGTCAATGGAGAGCCCTTCAGAAATCACCATCACTTTATGATGAAGTAGTATTCAAGGCCCTGGATTTTGTGGTGAGTGAAACAAAGAAATACAAAATCAGACTCATATTATCATTGGTTAACAATTGGGAGGCATATGGTGGCAAAGCACAGTATGTCAAGTGGGGCAATGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTTTTCTCACATCCAACTCTCAGAGGCTACTACAAGGACCATGTCAAGACTGTGCTCAGTAGAGTTAACACACTCACAAATATCACTTATAAGGAAGATCCAACAATTTTTGCTTGGGAGCTAATGAATGAGCCTCGATGCACCTCTGACTCCTCTGGTGATACGTTACAG

Protein sequence

>Msa0113040

MEEDEWQMVQKKGNQFVVNGQPFYVNGFNTYWLMVFAADESTRGRVTQVFKHASSVGMTVCRTWAFNDGQWRALQKSPSLYDEVVFKALDFVVSETKKYKIRLILSLVNNWEAYGGKAQYVKWGNAAGLNLTSDDDFFSHPTLRGYYKDHVKTVLSRVNTLTNITYKEDPTIFAWELMNEPRCTSDSSGDTLQ