Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183550 | XP_039685617.1 | 96.891 | 193 | 6 | 0 | 1 | 193 | 39 | 231 | 3.82e-134 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183550 | sp|Q9LZV3|MAN6_ARATH | 80.628 | 191 | 37 | 0 | 3 | 193 | 42 | 232 | 3.38e-115 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183550 | A0A396GII3 | 96.891 | 193 | 6 | 0 | 1 | 193 | 55 | 247 | 4.14e-134 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044420 | Msa0183550 | 0.878961 | 1.838320e-69 | -8.615850e-47 |
| Msa0090700 | Msa0183550 | 0.905001 | 6.806583e-80 | -8.615850e-47 |
| Msa0113040 | Msa0183550 | 0.931253 | 4.965564e-94 | -8.615850e-47 |
| Msa0183550 | Msa0323610 | 0.808073 | 3.705306e-50 | -8.615850e-47 |
| Msa0183550 | Msa0584130 | 0.821384 | 4.155837e-53 | -8.615850e-47 |
| Msa0183550 | Msa0909120 | 0.803903 | 2.791795e-49 | -8.615850e-47 |
| Msa0183550 | Msa1248270 | 0.806451 | 8.172323e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183550 | MtrunA17_Chr8g0334501 | 96.891 | 193 | 6 | 0 | 1 | 193 | 55 | 247 | 7.96e-138 | 395 |
| Msa0183550 | MtrunA17_Chr7g0245051 | 87.047 | 193 | 25 | 0 | 1 | 193 | 52 | 244 | 1.75e-125 | 363 |
| Msa0183550 | MtrunA17_Chr7g0245101 | 81.865 | 193 | 35 | 0 | 1 | 193 | 53 | 245 | 2.43e-117 | 343 |
| Msa0183550 | MtrunA17_Chr7g0271511 | 59.259 | 189 | 77 | 0 | 5 | 193 | 59 | 247 | 5.97e-81 | 249 |
| Msa0183550 | MtrunA17_Chr1g0193531 | 59.459 | 185 | 74 | 1 | 9 | 193 | 30 | 213 | 1.95e-79 | 244 |
| Msa0183550 | MtrunA17_Chr4g0040121 | 56.477 | 193 | 83 | 1 | 2 | 193 | 33 | 225 | 3.93e-79 | 244 |
| Msa0183550 | MtrunA17_Chr4g0020521 | 56.522 | 184 | 80 | 0 | 9 | 192 | 35 | 218 | 7.39e-79 | 243 |
| Msa0183550 | MtrunA17_Chr1g0193611 | 57.838 | 185 | 78 | 0 | 9 | 193 | 33 | 217 | 1.65e-78 | 242 |
| Msa0183550 | MtrunA17_Chr5g0404601 | 58.824 | 187 | 76 | 1 | 8 | 193 | 31 | 217 | 3.47e-77 | 239 |
| Msa0183550 | MtrunA17_Chr1g0193551 | 58.065 | 186 | 77 | 1 | 8 | 193 | 35 | 219 | 3.78e-77 | 238 |
| Msa0183550 | MtrunA17_Chr3g0141751 | 52.332 | 193 | 91 | 1 | 1 | 193 | 20 | 211 | 4.86e-76 | 236 |
| Msa0183550 | MtrunA17_Chr1g0193601 | 57.297 | 185 | 79 | 0 | 9 | 193 | 33 | 217 | 3.48e-75 | 233 |
| Msa0183550 | MtrunA17_Chr1g0193541 | 59.659 | 176 | 69 | 1 | 9 | 182 | 32 | 207 | 9.11e-75 | 232 |
| Msa0183550 | MtrunA17_Chr2g0324441 | 54.404 | 193 | 87 | 1 | 2 | 193 | 34 | 226 | 5.10e-73 | 228 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183550 | AT5G01930.1 | 80.628 | 191 | 37 | 0 | 3 | 193 | 42 | 232 | 3.43e-116 | 340 |
| Msa0183550 | AT3G10900.1 | 54.595 | 185 | 83 | 1 | 9 | 192 | 30 | 214 | 6.74e-74 | 231 |
| Msa0183550 | AT4G28320.1 | 55.376 | 186 | 82 | 1 | 9 | 193 | 42 | 227 | 1.50e-72 | 228 |
| Msa0183550 | AT2G20680.1 | 54.688 | 192 | 86 | 1 | 3 | 193 | 37 | 228 | 4.65e-72 | 226 |
| Msa0183550 | AT3G10890.1 | 51.630 | 184 | 89 | 0 | 9 | 192 | 32 | 215 | 1.05e-71 | 225 |
| Msa0183550 | AT5G66460.1 | 51.872 | 187 | 90 | 0 | 8 | 194 | 31 | 217 | 2.10e-71 | 225 |
| Msa0183550 | AT1G02310.1 | 51.872 | 187 | 83 | 3 | 9 | 193 | 30 | 211 | 4.43e-64 | 205 |
| Msa0183550 | AT1G02310.2 | 51.872 | 187 | 83 | 3 | 9 | 193 | 50 | 231 | 5.57e-64 | 206 |
| Msa0183550 | AT3G30540.1 | 41.935 | 186 | 71 | 1 | 9 | 194 | 30 | 178 | 9.18e-49 | 163 |
Find 66 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGGATTCAACACTTAT+TGG | 0.246669 | 1_4:-72513384 | Msa0183550:CDS |
| AGAAATTGAGTCATGAATTA+AGG | 0.308061 | 1_4:-72511756 | Msa0183550:CDS |
| GTTGGCCATTCACTACAAAT+TGG | 0.308540 | 1_4:+72513416 | None:intergenic |
| CTCCTCTGGTGATACGTTAC+AGG | 0.324607 | 1_4:-72512804 | Msa0183550:intron |
| TATTATCATTGGTTAACAAT+TGG | 0.335350 | 1_4:-72513147 | Msa0183550:CDS |
| ACTCACAAATATCACTTATA+AGG | 0.349810 | 1_4:-72512882 | Msa0183550:CDS |
| CAAGGCTTGTGATCTGTCTT+GGG | 0.356412 | 1_4:+72511848 | None:intergenic |
| ATTCAACACTTATTGGTTGA+TGG | 0.357211 | 1_4:-72513377 | Msa0183550:CDS |
| ATTATCATTGGTTAACAATT+GGG | 0.370572 | 1_4:-72513146 | Msa0183550:CDS |
| GCAAGGCTTGTGATCTGTCT+TGG | 0.374232 | 1_4:+72511847 | None:intergenic |
| GTATGACAGTTTGTAGGACT+TGG | 0.375713 | 1_4:-72513288 | Msa0183550:CDS |
| GGCCAACCTTTCTATGTCAA+TGG | 0.396915 | 1_4:-72513400 | Msa0183550:CDS |
| AATCAGACTCATATTATCAT+TGG | 0.419663 | 1_4:-72513158 | Msa0183550:CDS |
| GTCAAGTGGGGCAATGCTGC+TGG | 0.420167 | 1_4:-72513097 | Msa0183550:CDS |
| TTGAATCCATTGACATAGAA+AGG | 0.430244 | 1_4:+72513394 | None:intergenic |
| TCTCCCCATGAATGGCTGAT+TGG | 0.433378 | 1_4:+72511776 | None:intergenic |
| CAGTTGGTATGACAGTTTGT+AGG | 0.445206 | 1_4:-72513294 | Msa0183550:CDS |
| TTATGATGAAGTAGTATTCA+AGG | 0.449801 | 1_4:-72513218 | Msa0183550:CDS |
| GCTTTCCAATCAGCCATTCA+TGG | 0.450028 | 1_4:-72511781 | Msa0183550:CDS |
| GGAAACCAATTTGTAGTGAA+TGG | 0.455801 | 1_4:-72513421 | Msa0183550:CDS |
| GTTAACAATTGGGAGGCATA+TGG | 0.457775 | 1_4:-72513136 | Msa0183550:CDS |
| TGAATGGCTGATTGGAAAGC+TGG | 0.481040 | 1_4:+72511784 | None:intergenic |
| CTTTCCAATCAGCCATTCAT+GGG | 0.482851 | 1_4:-72511780 | Msa0183550:CDS |
| AGGACTTGGGCCTTCAATGA+TGG | 0.488912 | 1_4:-72513274 | Msa0183550:CDS |
| CGATGCACCTCTGACTCCTC+TGG | 0.493066 | 1_4:-72512818 | Msa0183550:CDS |
| ACTCAATTTCTCCCCATGAA+TGG | 0.495559 | 1_4:+72511768 | None:intergenic |
| TTTCACTCACCACAAAATCC+AGG | 0.498414 | 1_4:+72513194 | None:intergenic |
| GTGAAATGGAGGAAGATGAA+TGG | 0.499830 | 1_4:-72513462 | None:intergenic |
| TCTCCATTGACCATCATTGA+AGG | 0.500587 | 1_4:+72513264 | None:intergenic |
| TATGACAGTTTGTAGGACTT+GGG | 0.504511 | 1_4:-72513287 | Msa0183550:CDS |
| TGGCAGATGGTGCAAAAGAA+AGG | 0.506336 | 1_4:-72513442 | Msa0183550:CDS |
| TGAAGTAGTATTCAAGGCCC+TGG | 0.508682 | 1_4:-72513212 | Msa0183550:CDS |
| ATCCATTGACATAGAAAGGT+TGG | 0.514039 | 1_4:+72513398 | None:intergenic |
| TTGTAGTAGCCTCTGAGAGT+TGG | 0.519117 | 1_4:+72513037 | None:intergenic |
| ACCTCACAAGAGAGATTGCA+TGG | 0.528917 | 1_4:-72511729 | Msa0183550:CDS |
| GCAAAGCACAGTATGTCAAG+TGG | 0.532392 | 1_4:-72513111 | Msa0183550:CDS |
| GGGCCTTCAATGATGGTCAA+TGG | 0.538506 | 1_4:-72513267 | Msa0183550:CDS |
| CATCATCAGAGGTCAAGTTA+AGG | 0.540046 | 1_4:+72513074 | None:intergenic |
| CGGATGAGTCGACAAGAGGA+AGG | 0.554210 | 1_4:-72513345 | Msa0183550:CDS |
| AAAGTGATGGTGATTTCTGA+AGG | 0.556976 | 1_4:+72513239 | None:intergenic |
| CAAAGCACAGTATGTCAAGT+GGG | 0.561874 | 1_4:-72513110 | Msa0183550:CDS |
| TTCAAACATGCATCCTCAGT+TGG | 0.569301 | 1_4:-72513310 | Msa0183550:CDS |
| AAAATTGATATGCAATGGCA+AGG | 0.577934 | 1_4:+72511830 | None:intergenic |
| ATCATTGGTTAACAATTGGG+AGG | 0.578607 | 1_4:-72513143 | Msa0183550:CDS |
| AACTCTCAGAGGCTACTACA+AGG | 0.578621 | 1_4:-72513035 | Msa0183550:CDS |
| GACAAGAGGAAGGGTCACTC+AGG | 0.585832 | 1_4:-72513335 | Msa0183550:CDS |
| CGTATCACCAGAGGAGTCAG+AGG | 0.597961 | 1_4:+72512811 | None:intergenic |
| TTCACTCACCACAAAATCCA+GGG | 0.604887 | 1_4:+72513195 | None:intergenic |
| TTCTCACATCCAACTCTCAG+AGG | 0.605503 | 1_4:-72513046 | Msa0183550:CDS |
| ACTACTTCATCATAAAGTGA+TGG | 0.615191 | 1_4:+72513226 | None:intergenic |
| AACAATTGGGAGGCATATGG+TGG | 0.626650 | 1_4:-72513133 | Msa0183550:CDS |
| CCCATGCAATCTCTCTTGTG+AGG | 0.635677 | 1_4:+72511728 | None:intergenic |
| TTGGTTGATGGTATTTGCTG+CGG | 0.640214 | 1_4:-72513365 | Msa0183550:CDS |
| GCTGCGGATGAGTCGACAAG+AGG | 0.648322 | 1_4:-72513349 | Msa0183550:CDS |
| AAGTGATGGTGATTTCTGAA+GGG | 0.650216 | 1_4:+72513240 | None:intergenic |
| GTAATAAAATTGATATGCAA+TGG | 0.655248 | 1_4:+72511825 | None:intergenic |
| TCAAGGAACTTACCTTGACA+TGG | 0.657148 | 1_4:+72513011 | None:intergenic |
| TTTCCAATCAGCCATTCATG+GGG | 0.658572 | 1_4:-72511779 | Msa0183550:CDS |
| CTACTACAAGGACCATGTCA+AGG | 0.659291 | 1_4:-72513023 | Msa0183550:intron |
| GGATGAGTCGACAAGAGGAA+GGG | 0.663089 | 1_4:-72513344 | Msa0183550:CDS |
| ACAAACTGTCATACCAACTG+AGG | 0.663360 | 1_4:+72513297 | None:intergenic |
| GGAGGAAGATGAATGGCAGA+TGG | 0.665469 | 1_4:-72513455 | Msa0183550:CDS |
| CCTCACAAGAGAGATTGCAT+GGG | 0.673750 | 1_4:-72511728 | Msa0183550:CDS |
| AAAGCACAGTATGTCAAGTG+GGG | 0.694927 | 1_4:-72513109 | Msa0183550:CDS |
| TACCTGTAACGTATCACCAG+AGG | 0.699288 | 1_4:+72512802 | None:intergenic |
| GAGGAGTCAGAGGTGCATCG+AGG | 0.724283 | 1_4:+72512821 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | + | chr1_4:72512212-72512231 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | - | chr1_4:72512212-72512231 | Msa0183550:intron | 15.0% |
| !!! | AAATTGTAATGTTTTTTTGA+TGG | + | chr1_4:72512963-72512982 | None:intergenic | 15.0% |
| !!! | ATTACAATTTTTGATTATCT+AGG | - | chr1_4:72512973-72512992 | Msa0183550:intron | 15.0% |
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | + | chr1_4:72512212-72512231 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | - | chr1_4:72512212-72512231 | Msa0183550:intron | 15.0% |
| !!! | AAATTGTAATGTTTTTTTGA+TGG | + | chr1_4:72512963-72512982 | None:intergenic | 15.0% |
| !!! | ATTACAATTTTTGATTATCT+AGG | - | chr1_4:72512973-72512992 | Msa0183550:intron | 15.0% |
| !!! | TATTATCATTGGTTAACAAT+TGG | - | chr1_4:72512027-72512046 | Msa0183550:intron | 20.0% |
| !!! | ATTATCATTGGTTAACAATT+GGG | - | chr1_4:72512028-72512047 | Msa0183550:intron | 20.0% |
| !! | CTAAAGACATACTAAATAAT+TGG | + | chr1_4:72512551-72512570 | None:intergenic | 20.0% |
| !!! | GTTAATTATTTGTTACGATA+TGG | - | chr1_4:72512633-72512652 | Msa0183550:intron | 20.0% |
| !!! | ATATAGTCACAATTTTACAT+AGG | + | chr1_4:72512733-72512752 | None:intergenic | 20.0% |
| !!! | ATTCCATTAATTTTGTTGTA+AGG | - | chr1_4:72512862-72512881 | Msa0183550:CDS | 20.0% |
| !!! | CATTGATTTCAATATAAAGT+TGG | + | chr1_4:72513067-72513086 | None:intergenic | 20.0% |
| !! | CAACTTTATATTGAAATCAA+TGG | - | chr1_4:72513065-72513084 | Msa0183550:CDS | 20.0% |
| !!! | ATATTTTTCTTGTATTAGTG+TGG | - | chr1_4:72513297-72513316 | Msa0183550:CDS | 20.0% |
| !! | GTAATAAAATTGATATGCAA+TGG | + | chr1_4:72513352-72513371 | None:intergenic | 20.0% |
| !!! | TATTATCATTGGTTAACAAT+TGG | - | chr1_4:72512027-72512046 | Msa0183550:intron | 20.0% |
| !!! | ATTATCATTGGTTAACAATT+GGG | - | chr1_4:72512028-72512047 | Msa0183550:intron | 20.0% |
| !! | CTAAAGACATACTAAATAAT+TGG | + | chr1_4:72512551-72512570 | None:intergenic | 20.0% |
| !!! | GTTAATTATTTGTTACGATA+TGG | - | chr1_4:72512633-72512652 | Msa0183550:intron | 20.0% |
| !!! | ATATAGTCACAATTTTACAT+AGG | + | chr1_4:72512733-72512752 | None:intergenic | 20.0% |
| !!! | ATTCCATTAATTTTGTTGTA+AGG | - | chr1_4:72512862-72512881 | Msa0183550:CDS | 20.0% |
| !!! | CATTGATTTCAATATAAAGT+TGG | + | chr1_4:72513067-72513086 | None:intergenic | 20.0% |
| !! | CAACTTTATATTGAAATCAA+TGG | - | chr1_4:72513065-72513084 | Msa0183550:CDS | 20.0% |
| !!! | ATATTTTTCTTGTATTAGTG+TGG | - | chr1_4:72513297-72513316 | Msa0183550:CDS | 20.0% |
| !! | GTAATAAAATTGATATGCAA+TGG | + | chr1_4:72513352-72513371 | None:intergenic | 20.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | - | chr1_4:72511956-72511975 | Msa0183550:intron | 25.0% |
| ! | AATCAGACTCATATTATCAT+TGG | - | chr1_4:72512016-72512035 | Msa0183550:intron | 25.0% |
| !! | AACAGGAAGAATTAAGTTTT+AGG | + | chr1_4:72512195-72512214 | None:intergenic | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | + | chr1_4:72512240-72512259 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | - | chr1_4:72512292-72512311 | Msa0183550:intron | 25.0% |
| !! | AGTTCAAAGATAATTTGTGT+TGG | - | chr1_4:72512421-72512440 | Msa0183550:intron | 25.0% |
| ! | AAGACATACTAAATAATTGG+AGG | + | chr1_4:72512548-72512567 | None:intergenic | 25.0% |
| ! | TGGTCAGTTATGTTAAAAAA+TGG | - | chr1_4:72512578-72512597 | Msa0183550:intron | 25.0% |
| !!! | GAATTTTGGAAAAAAAAGTG+TGG | - | chr1_4:72512611-72512630 | Msa0183550:intron | 25.0% |
| ! | GACTATATGCTTCAATTATT+TGG | - | chr1_4:72512745-72512764 | Msa0183550:intron | 25.0% |
| !!! | ACATAACAAATAGTCACTTT+TGG | + | chr1_4:72512829-72512848 | None:intergenic | 25.0% |
| ! | CAACCTTACAACAAAATTAA+TGG | + | chr1_4:72512868-72512887 | None:intergenic | 25.0% |
| !!! | AAGGTTGATAAACTTATAGA+AGG | - | chr1_4:72512881-72512900 | Msa0183550:CDS | 25.0% |
| ! | TCAATATAAAGTTGGATAGA+TGG | + | chr1_4:72513059-72513078 | None:intergenic | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr1_4:72513274-72513293 | Msa0183550:CDS | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | chr1_4:72513418-72513437 | Msa0183550:CDS | 25.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | - | chr1_4:72511956-72511975 | Msa0183550:intron | 25.0% |
| ! | AATCAGACTCATATTATCAT+TGG | - | chr1_4:72512016-72512035 | Msa0183550:intron | 25.0% |
| !! | AACAGGAAGAATTAAGTTTT+AGG | + | chr1_4:72512195-72512214 | None:intergenic | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | + | chr1_4:72512240-72512259 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | - | chr1_4:72512292-72512311 | Msa0183550:intron | 25.0% |
| !! | AGTTCAAAGATAATTTGTGT+TGG | - | chr1_4:72512421-72512440 | Msa0183550:intron | 25.0% |
| ! | AAGACATACTAAATAATTGG+AGG | + | chr1_4:72512548-72512567 | None:intergenic | 25.0% |
| ! | TGGTCAGTTATGTTAAAAAA+TGG | - | chr1_4:72512578-72512597 | Msa0183550:intron | 25.0% |
| !!! | GAATTTTGGAAAAAAAAGTG+TGG | - | chr1_4:72512611-72512630 | Msa0183550:intron | 25.0% |
| ! | GACTATATGCTTCAATTATT+TGG | - | chr1_4:72512745-72512764 | Msa0183550:intron | 25.0% |
| !!! | ACATAACAAATAGTCACTTT+TGG | + | chr1_4:72512829-72512848 | None:intergenic | 25.0% |
| ! | CAACCTTACAACAAAATTAA+TGG | + | chr1_4:72512868-72512887 | None:intergenic | 25.0% |
| !!! | AAGGTTGATAAACTTATAGA+AGG | - | chr1_4:72512881-72512900 | Msa0183550:CDS | 25.0% |
| ! | TCAATATAAAGTTGGATAGA+TGG | + | chr1_4:72513059-72513078 | None:intergenic | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr1_4:72513274-72513293 | Msa0183550:CDS | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | chr1_4:72513418-72513437 | Msa0183550:CDS | 25.0% |
| TTGAATCCATTGACATAGAA+AGG | + | chr1_4:72511783-72511802 | None:intergenic | 30.0% | |
| ! | TCAATGGATTCAACACTTAT+TGG | - | chr1_4:72511790-72511809 | Msa0183550:CDS | 30.0% |
| ! | ATTCAACACTTATTGGTTGA+TGG | - | chr1_4:72511797-72511816 | Msa0183550:CDS | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | + | chr1_4:72511951-72511970 | None:intergenic | 30.0% | |
| !!! | TAAGTTTTAGGTACATCTCA+AGG | + | chr1_4:72512183-72512202 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | - | chr1_4:72512315-72512334 | Msa0183550:intron | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | - | chr1_4:72512316-72512335 | Msa0183550:intron | 30.0% |
| ACTGAGAAAATAACAATGAG+AGG | + | chr1_4:72512508-72512527 | None:intergenic | 30.0% | |
| AGTATGTCTTTAGTGATTTG+TGG | - | chr1_4:72512558-72512577 | Msa0183550:intron | 30.0% | |
| TGTTAAAAAATGGCTAAGTG+TGG | - | chr1_4:72512588-72512607 | Msa0183550:intron | 30.0% | |
| GTTAAAAAATGGCTAAGTGT+GGG | - | chr1_4:72512589-72512608 | Msa0183550:intron | 30.0% | |
| TGGGGAATAGTTAAAAAAGA+TGG | - | chr1_4:72512702-72512721 | Msa0183550:intron | 30.0% | |
| GCTTCAATTATTTGGTTACT+TGG | - | chr1_4:72512753-72512772 | Msa0183550:intron | 30.0% | |
| !! | TTGTGCTTGTTGTTTATTAC+AGG | - | chr1_4:72513022-72513041 | Msa0183550:intron | 30.0% |
| AAACTCAAAGCATGTACTTT+CGG | + | chr1_4:72513109-72513128 | None:intergenic | 30.0% | |
| ACATCATACATTTCAATTGC+TGG | + | chr1_4:72513147-72513166 | None:intergenic | 30.0% | |
| ! | TCTAGAATTTATCATCTGCT+TGG | - | chr1_4:72513173-72513192 | Msa0183550:CDS | 30.0% |
| !! | TTGGCTTTAATAAGATGCTT+TGG | - | chr1_4:72513192-72513211 | Msa0183550:CDS | 30.0% |
| AAAATTGATATGCAATGGCA+AGG | + | chr1_4:72513347-72513366 | None:intergenic | 30.0% | |
| TTGAATCCATTGACATAGAA+AGG | + | chr1_4:72511783-72511802 | None:intergenic | 30.0% | |
| ! | TCAATGGATTCAACACTTAT+TGG | - | chr1_4:72511790-72511809 | Msa0183550:CDS | 30.0% |
| ! | ATTCAACACTTATTGGTTGA+TGG | - | chr1_4:72511797-72511816 | Msa0183550:CDS | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | + | chr1_4:72511951-72511970 | None:intergenic | 30.0% | |
| !!! | TAAGTTTTAGGTACATCTCA+AGG | + | chr1_4:72512183-72512202 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | - | chr1_4:72512315-72512334 | Msa0183550:intron | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | - | chr1_4:72512316-72512335 | Msa0183550:intron | 30.0% |
| ACTGAGAAAATAACAATGAG+AGG | + | chr1_4:72512508-72512527 | None:intergenic | 30.0% | |
| AGTATGTCTTTAGTGATTTG+TGG | - | chr1_4:72512558-72512577 | Msa0183550:intron | 30.0% | |
| TGTTAAAAAATGGCTAAGTG+TGG | - | chr1_4:72512588-72512607 | Msa0183550:intron | 30.0% | |
| GTTAAAAAATGGCTAAGTGT+GGG | - | chr1_4:72512589-72512608 | Msa0183550:intron | 30.0% | |
| TGGGGAATAGTTAAAAAAGA+TGG | - | chr1_4:72512702-72512721 | Msa0183550:intron | 30.0% | |
| GCTTCAATTATTTGGTTACT+TGG | - | chr1_4:72512753-72512772 | Msa0183550:intron | 30.0% | |
| !! | TTGTGCTTGTTGTTTATTAC+AGG | - | chr1_4:72513022-72513041 | Msa0183550:intron | 30.0% |
| AAACTCAAAGCATGTACTTT+CGG | + | chr1_4:72513109-72513128 | None:intergenic | 30.0% | |
| ACATCATACATTTCAATTGC+TGG | + | chr1_4:72513147-72513166 | None:intergenic | 30.0% | |
| ! | TCTAGAATTTATCATCTGCT+TGG | - | chr1_4:72513173-72513192 | Msa0183550:CDS | 30.0% |
| !! | TTGGCTTTAATAAGATGCTT+TGG | - | chr1_4:72513192-72513211 | Msa0183550:CDS | 30.0% |
| AAAATTGATATGCAATGGCA+AGG | + | chr1_4:72513347-72513366 | None:intergenic | 30.0% | |
| GGAAACCAATTTGTAGTGAA+TGG | - | chr1_4:72511753-72511772 | Msa0183550:CDS | 35.0% | |
| ATCCATTGACATAGAAAGGT+TGG | + | chr1_4:72511779-72511798 | None:intergenic | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | - | chr1_4:72511887-72511906 | Msa0183550:intron | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | + | chr1_4:72511937-72511956 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | + | chr1_4:72511938-72511957 | None:intergenic | 35.0% |
| ! | ATCATTGGTTAACAATTGGG+AGG | - | chr1_4:72512031-72512050 | Msa0183550:intron | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | + | chr1_4:72512114-72512133 | None:intergenic | 35.0% | |
| TCGAGCAAGCATATAATTGA+TGG | - | chr1_4:72512682-72512701 | Msa0183550:intron | 35.0% | |
| CGAGCAAGCATATAATTGAT+GGG | - | chr1_4:72512683-72512702 | Msa0183550:intron | 35.0% | |
| GAGCAAGCATATAATTGATG+GGG | - | chr1_4:72512684-72512703 | Msa0183550:intron | 35.0% | |
| GCACAAACTACATATGAGAA+GGG | + | chr1_4:72513008-72513027 | None:intergenic | 35.0% | |
| AGCACAAACTACATATGAGA+AGG | + | chr1_4:72513009-72513028 | None:intergenic | 35.0% | |
| ! | GTACATGCTTTGAGTTTCTA+TGG | - | chr1_4:72513112-72513131 | Msa0183550:CDS | 35.0% |
| TCATACATTTCAATTGCTGG+TGG | + | chr1_4:72513144-72513163 | None:intergenic | 35.0% | |
| GGAAACCAATTTGTAGTGAA+TGG | - | chr1_4:72511753-72511772 | Msa0183550:CDS | 35.0% | |
| ATCCATTGACATAGAAAGGT+TGG | + | chr1_4:72511779-72511798 | None:intergenic | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | - | chr1_4:72511887-72511906 | Msa0183550:intron | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | + | chr1_4:72511937-72511956 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | + | chr1_4:72511938-72511957 | None:intergenic | 35.0% |
| ! | ATCATTGGTTAACAATTGGG+AGG | - | chr1_4:72512031-72512050 | Msa0183550:intron | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | + | chr1_4:72512114-72512133 | None:intergenic | 35.0% | |
| TCGAGCAAGCATATAATTGA+TGG | - | chr1_4:72512682-72512701 | Msa0183550:intron | 35.0% | |
| CGAGCAAGCATATAATTGAT+GGG | - | chr1_4:72512683-72512702 | Msa0183550:intron | 35.0% | |
| GAGCAAGCATATAATTGATG+GGG | - | chr1_4:72512684-72512703 | Msa0183550:intron | 35.0% | |
| GCACAAACTACATATGAGAA+GGG | + | chr1_4:72513008-72513027 | None:intergenic | 35.0% | |
| AGCACAAACTACATATGAGA+AGG | + | chr1_4:72513009-72513028 | None:intergenic | 35.0% | |
| ! | GTACATGCTTTGAGTTTCTA+TGG | - | chr1_4:72513112-72513131 | Msa0183550:CDS | 35.0% |
| TCATACATTTCAATTGCTGG+TGG | + | chr1_4:72513144-72513163 | None:intergenic | 35.0% | |
| GTTGGCCATTCACTACAAAT+TGG | + | chr1_4:72511761-72511780 | None:intergenic | 40.0% | |
| !! | TTGGTTGATGGTATTTGCTG+CGG | - | chr1_4:72511809-72511828 | Msa0183550:CDS | 40.0% |
| TTCAAACATGCATCCTCAGT+TGG | - | chr1_4:72511864-72511883 | Msa0183550:intron | 40.0% | |
| ACAAACTGTCATACCAACTG+AGG | + | chr1_4:72511880-72511899 | None:intergenic | 40.0% | |
| ! | CAGTTGGTATGACAGTTTGT+AGG | - | chr1_4:72511880-72511899 | Msa0183550:intron | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | - | chr1_4:72511886-72511905 | Msa0183550:intron | 40.0% | |
| TCTCCATTGACCATCATTGA+AGG | + | chr1_4:72511913-72511932 | None:intergenic | 40.0% | |
| TTCACTCACCACAAAATCCA+GGG | + | chr1_4:72511982-72512001 | None:intergenic | 40.0% | |
| TTTCACTCACCACAAAATCC+AGG | + | chr1_4:72511983-72512002 | None:intergenic | 40.0% | |
| ! | GTTAACAATTGGGAGGCATA+TGG | - | chr1_4:72512038-72512057 | Msa0183550:intron | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | - | chr1_4:72512064-72512083 | Msa0183550:intron | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | - | chr1_4:72512065-72512084 | Msa0183550:intron | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | + | chr1_4:72512103-72512122 | None:intergenic | 40.0% | |
| TCAAGGAACTTACCTTGACA+TGG | + | chr1_4:72512166-72512185 | None:intergenic | 40.0% | |
| AGCTCCCAAGCAAAAATTGT+TGG | + | chr1_4:72512323-72512342 | None:intergenic | 40.0% | |
| ! | ATGGCTAAGTGTGGGAATTT+TGG | - | chr1_4:72512597-72512616 | Msa0183550:intron | 40.0% |
| CTTTCCAATCAGCCATTCAT+GGG | - | chr1_4:72513394-72513413 | Msa0183550:CDS | 40.0% | |
| TTTCCAATCAGCCATTCATG+GGG | - | chr1_4:72513395-72513414 | Msa0183550:CDS | 40.0% | |
| ACTCAATTTCTCCCCATGAA+TGG | + | chr1_4:72513409-72513428 | None:intergenic | 40.0% | |
| ! | GAGAGATTGCATGGGTTTTT+CGG | - | chr1_4:72513454-72513473 | Msa0183550:CDS | 40.0% |
| GTTGGCCATTCACTACAAAT+TGG | + | chr1_4:72511761-72511780 | None:intergenic | 40.0% | |
| !! | TTGGTTGATGGTATTTGCTG+CGG | - | chr1_4:72511809-72511828 | Msa0183550:CDS | 40.0% |
| TTCAAACATGCATCCTCAGT+TGG | - | chr1_4:72511864-72511883 | Msa0183550:intron | 40.0% | |
| ACAAACTGTCATACCAACTG+AGG | + | chr1_4:72511880-72511899 | None:intergenic | 40.0% | |
| ! | CAGTTGGTATGACAGTTTGT+AGG | - | chr1_4:72511880-72511899 | Msa0183550:intron | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | - | chr1_4:72511886-72511905 | Msa0183550:intron | 40.0% | |
| TCTCCATTGACCATCATTGA+AGG | + | chr1_4:72511913-72511932 | None:intergenic | 40.0% | |
| TTCACTCACCACAAAATCCA+GGG | + | chr1_4:72511982-72512001 | None:intergenic | 40.0% | |
| TTTCACTCACCACAAAATCC+AGG | + | chr1_4:72511983-72512002 | None:intergenic | 40.0% | |
| ! | GTTAACAATTGGGAGGCATA+TGG | - | chr1_4:72512038-72512057 | Msa0183550:intron | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | - | chr1_4:72512064-72512083 | Msa0183550:intron | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | - | chr1_4:72512065-72512084 | Msa0183550:intron | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | + | chr1_4:72512103-72512122 | None:intergenic | 40.0% | |
| TCAAGGAACTTACCTTGACA+TGG | + | chr1_4:72512166-72512185 | None:intergenic | 40.0% | |
| AGCTCCCAAGCAAAAATTGT+TGG | + | chr1_4:72512323-72512342 | None:intergenic | 40.0% | |
| ! | ATGGCTAAGTGTGGGAATTT+TGG | - | chr1_4:72512597-72512616 | Msa0183550:intron | 40.0% |
| CTTTCCAATCAGCCATTCAT+GGG | - | chr1_4:72513394-72513413 | Msa0183550:CDS | 40.0% | |
| TTTCCAATCAGCCATTCATG+GGG | - | chr1_4:72513395-72513414 | Msa0183550:CDS | 40.0% | |
| ACTCAATTTCTCCCCATGAA+TGG | + | chr1_4:72513409-72513428 | None:intergenic | 40.0% | |
| ! | GAGAGATTGCATGGGTTTTT+CGG | - | chr1_4:72513454-72513473 | Msa0183550:CDS | 40.0% |
| TGGCAGATGGTGCAAAAGAA+AGG | - | chr1_4:72511732-72511751 | Msa0183550:CDS | 45.0% | |
| GGCCAACCTTTCTATGTCAA+TGG | - | chr1_4:72511774-72511793 | Msa0183550:CDS | 45.0% | |
| TGAAGTAGTATTCAAGGCCC+TGG | - | chr1_4:72511962-72511981 | Msa0183550:intron | 45.0% | |
| ! | ATTCAAGGCCCTGGATTTTG+TGG | - | chr1_4:72511971-72511990 | Msa0183550:intron | 45.0% |
| ! | AACAATTGGGAGGCATATGG+TGG | - | chr1_4:72512041-72512060 | Msa0183550:intron | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | - | chr1_4:72512063-72512082 | Msa0183550:intron | 45.0% | |
| TTCTCACATCCAACTCTCAG+AGG | - | chr1_4:72512128-72512147 | Msa0183550:intron | 45.0% | |
| ! | TTGTAGTAGCCTCTGAGAGT+TGG | + | chr1_4:72512140-72512159 | None:intergenic | 45.0% |
| AACTCTCAGAGGCTACTACA+AGG | - | chr1_4:72512139-72512158 | Msa0183550:intron | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | - | chr1_4:72512151-72512170 | Msa0183550:intron | 45.0% | |
| TACCTGTAACGTATCACCAG+AGG | + | chr1_4:72512375-72512394 | None:intergenic | 45.0% | |
| CAAGGCTTGTGATCTGTCTT+GGG | + | chr1_4:72513329-72513348 | None:intergenic | 45.0% | |
| TGAATGGCTGATTGGAAAGC+TGG | + | chr1_4:72513393-72513412 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCCATTCA+TGG | - | chr1_4:72513393-72513412 | Msa0183550:CDS | 45.0% | |
| ACCTCACAAGAGAGATTGCA+TGG | - | chr1_4:72513445-72513464 | Msa0183550:CDS | 45.0% | |
| CCTCACAAGAGAGATTGCAT+GGG | - | chr1_4:72513446-72513465 | Msa0183550:CDS | 45.0% | |
| TGGCAGATGGTGCAAAAGAA+AGG | - | chr1_4:72511732-72511751 | Msa0183550:CDS | 45.0% | |
| GGCCAACCTTTCTATGTCAA+TGG | - | chr1_4:72511774-72511793 | Msa0183550:CDS | 45.0% | |
| TGAAGTAGTATTCAAGGCCC+TGG | - | chr1_4:72511962-72511981 | Msa0183550:intron | 45.0% | |
| ! | ATTCAAGGCCCTGGATTTTG+TGG | - | chr1_4:72511971-72511990 | Msa0183550:intron | 45.0% |
| ! | AACAATTGGGAGGCATATGG+TGG | - | chr1_4:72512041-72512060 | Msa0183550:intron | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | - | chr1_4:72512063-72512082 | Msa0183550:intron | 45.0% | |
| TTCTCACATCCAACTCTCAG+AGG | - | chr1_4:72512128-72512147 | Msa0183550:intron | 45.0% | |
| ! | TTGTAGTAGCCTCTGAGAGT+TGG | + | chr1_4:72512140-72512159 | None:intergenic | 45.0% |
| AACTCTCAGAGGCTACTACA+AGG | - | chr1_4:72512139-72512158 | Msa0183550:intron | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | - | chr1_4:72512151-72512170 | Msa0183550:intron | 45.0% | |
| TACCTGTAACGTATCACCAG+AGG | + | chr1_4:72512375-72512394 | None:intergenic | 45.0% | |
| CAAGGCTTGTGATCTGTCTT+GGG | + | chr1_4:72513329-72513348 | None:intergenic | 45.0% | |
| TGAATGGCTGATTGGAAAGC+TGG | + | chr1_4:72513393-72513412 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCCATTCA+TGG | - | chr1_4:72513393-72513412 | Msa0183550:CDS | 45.0% | |
| ACCTCACAAGAGAGATTGCA+TGG | - | chr1_4:72513445-72513464 | Msa0183550:CDS | 45.0% | |
| CCTCACAAGAGAGATTGCAT+GGG | - | chr1_4:72513446-72513465 | Msa0183550:CDS | 45.0% | |
| GGAGGAAGATGAATGGCAGA+TGG | - | chr1_4:72511719-72511738 | Msa0183550:CDS | 50.0% | |
| GGATGAGTCGACAAGAGGAA+GGG | - | chr1_4:72511830-72511849 | Msa0183550:CDS | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | - | chr1_4:72511900-72511919 | Msa0183550:intron | 50.0% | |
| GGGCCTTCAATGATGGTCAA+TGG | - | chr1_4:72511907-72511926 | Msa0183550:intron | 50.0% | |
| CTCCTCTGGTGATACGTTAC+AGG | - | chr1_4:72512370-72512389 | Msa0183550:intron | 50.0% | |
| GCAAGGCTTGTGATCTGTCT+TGG | + | chr1_4:72513330-72513349 | None:intergenic | 50.0% | |
| TCTCCCCATGAATGGCTGAT+TGG | + | chr1_4:72513401-72513420 | None:intergenic | 50.0% | |
| CCCATGCAATCTCTCTTGTG+AGG | + | chr1_4:72513449-72513468 | None:intergenic | 50.0% | |
| GGAGGAAGATGAATGGCAGA+TGG | - | chr1_4:72511719-72511738 | Msa0183550:CDS | 50.0% | |
| GGATGAGTCGACAAGAGGAA+GGG | - | chr1_4:72511830-72511849 | Msa0183550:CDS | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | - | chr1_4:72511900-72511919 | Msa0183550:intron | 50.0% | |
| GGGCCTTCAATGATGGTCAA+TGG | - | chr1_4:72511907-72511926 | Msa0183550:intron | 50.0% | |
| CTCCTCTGGTGATACGTTAC+AGG | - | chr1_4:72512370-72512389 | Msa0183550:intron | 50.0% | |
| GCAAGGCTTGTGATCTGTCT+TGG | + | chr1_4:72513330-72513349 | None:intergenic | 50.0% | |
| TCTCCCCATGAATGGCTGAT+TGG | + | chr1_4:72513401-72513420 | None:intergenic | 50.0% | |
| CCCATGCAATCTCTCTTGTG+AGG | + | chr1_4:72513449-72513468 | None:intergenic | 50.0% | |
| CGGATGAGTCGACAAGAGGA+AGG | - | chr1_4:72511829-72511848 | Msa0183550:CDS | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | - | chr1_4:72511839-72511858 | Msa0183550:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | + | chr1_4:72512366-72512385 | None:intergenic | 55.0% | |
| CGGATGAGTCGACAAGAGGA+AGG | - | chr1_4:72511829-72511848 | Msa0183550:CDS | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | - | chr1_4:72511839-72511858 | Msa0183550:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | + | chr1_4:72512366-72512385 | None:intergenic | 55.0% | |
| GCTGCGGATGAGTCGACAAG+AGG | - | chr1_4:72511825-72511844 | Msa0183550:CDS | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | - | chr1_4:72512077-72512096 | Msa0183550:intron | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | + | chr1_4:72512356-72512375 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | - | chr1_4:72512356-72512375 | Msa0183550:intron | 60.0% | |
| GCTGCGGATGAGTCGACAAG+AGG | - | chr1_4:72511825-72511844 | Msa0183550:CDS | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | - | chr1_4:72512077-72512096 | Msa0183550:intron | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | + | chr1_4:72512356-72512375 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | - | chr1_4:72512356-72512375 | Msa0183550:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 72511717 | 72513479 | 72511717 | ID=Msa0183550;Name=Msa0183550 |
| chr1_4 | mRNA | 72511717 | 72513479 | 72511717 | ID=Msa0183550-mRNA-1;Parent=Msa0183550;Name=Msa0183550-mRNA-1;_AED=0.19;_eAED=0.30;_QI=0|0|0|1|1|1|3|0|247 |
| chr1_4 | exon | 72513024 | 72513479 | 72513024 | ID=Msa0183550-mRNA-1:exon:24557;Parent=Msa0183550-mRNA-1 |
| chr1_4 | exon | 72512805 | 72512927 | 72512805 | ID=Msa0183550-mRNA-1:exon:24556;Parent=Msa0183550-mRNA-1 |
| chr1_4 | exon | 72511717 | 72511881 | 72511717 | ID=Msa0183550-mRNA-1:exon:24555;Parent=Msa0183550-mRNA-1 |
| chr1_4 | CDS | 72513024 | 72513479 | 72513024 | ID=Msa0183550-mRNA-1:cds;Parent=Msa0183550-mRNA-1 |
| chr1_4 | CDS | 72512805 | 72512927 | 72512805 | ID=Msa0183550-mRNA-1:cds;Parent=Msa0183550-mRNA-1 |
| chr1_4 | CDS | 72511717 | 72511881 | 72511717 | ID=Msa0183550-mRNA-1:cds;Parent=Msa0183550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
