Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044420 | XP_039685617.1 | 96.891 | 193 | 6 | 0 | 1 | 193 | 39 | 231 | 4.26e-134 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044420 | sp|Q9LZV3|MAN6_ARATH | 80.628 | 191 | 37 | 0 | 3 | 193 | 42 | 232 | 2.66e-115 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044420 | A0A396GII3 | 96.891 | 193 | 6 | 0 | 1 | 193 | 55 | 247 | 3.71e-134 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044420 | Msa0090700 | 0.964235 | 4.507105e-123 | -8.615850e-47 |
| Msa0044420 | Msa0113040 | 0.859070 | 5.332719e-63 | -8.615850e-47 |
| Msa0044420 | Msa0183550 | 0.878961 | 1.838320e-69 | -8.615850e-47 |
| Msa0044420 | Msa0323080 | 0.804568 | 2.029602e-49 | -8.615850e-47 |
| Msa0044420 | Msa0623080 | 0.804547 | 2.050457e-49 | -8.615850e-47 |
| Msa0044420 | Msa1248270 | 0.824227 | 9.045808e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044420 | MtrunA17_Chr8g0334501 | 96.891 | 193 | 6 | 0 | 1 | 193 | 55 | 247 | 7.14e-138 | 395 |
| Msa0044420 | MtrunA17_Chr7g0245051 | 87.047 | 193 | 25 | 0 | 1 | 193 | 52 | 244 | 1.37e-125 | 364 |
| Msa0044420 | MtrunA17_Chr7g0245101 | 81.865 | 193 | 35 | 0 | 1 | 193 | 53 | 245 | 2.36e-117 | 343 |
| Msa0044420 | MtrunA17_Chr7g0271511 | 59.677 | 186 | 75 | 0 | 8 | 193 | 62 | 247 | 7.02e-81 | 249 |
| Msa0044420 | MtrunA17_Chr1g0193531 | 59.459 | 185 | 74 | 1 | 9 | 193 | 30 | 213 | 2.19e-79 | 244 |
| Msa0044420 | MtrunA17_Chr4g0040121 | 56.477 | 193 | 83 | 1 | 2 | 193 | 33 | 225 | 4.14e-79 | 244 |
| Msa0044420 | MtrunA17_Chr4g0020521 | 56.522 | 184 | 80 | 0 | 9 | 192 | 35 | 218 | 7.00e-79 | 243 |
| Msa0044420 | MtrunA17_Chr1g0193611 | 57.838 | 185 | 78 | 0 | 9 | 193 | 33 | 217 | 1.43e-78 | 242 |
| Msa0044420 | MtrunA17_Chr5g0404601 | 58.824 | 187 | 76 | 1 | 8 | 193 | 31 | 217 | 2.92e-77 | 239 |
| Msa0044420 | MtrunA17_Chr1g0193551 | 58.065 | 186 | 77 | 1 | 8 | 193 | 35 | 219 | 3.18e-77 | 238 |
| Msa0044420 | MtrunA17_Chr3g0141751 | 52.332 | 193 | 91 | 1 | 1 | 193 | 20 | 211 | 5.36e-76 | 236 |
| Msa0044420 | MtrunA17_Chr1g0193601 | 57.297 | 185 | 79 | 0 | 9 | 193 | 33 | 217 | 3.12e-75 | 233 |
| Msa0044420 | MtrunA17_Chr1g0193541 | 59.322 | 177 | 70 | 1 | 9 | 183 | 32 | 208 | 8.44e-75 | 232 |
| Msa0044420 | MtrunA17_Chr2g0324441 | 54.404 | 193 | 87 | 1 | 2 | 193 | 34 | 226 | 4.99e-73 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044420 | AT5G01930.1 | 80.628 | 191 | 37 | 0 | 3 | 193 | 42 | 232 | 2.70e-116 | 340 |
| Msa0044420 | AT3G10900.1 | 54.595 | 185 | 83 | 1 | 9 | 192 | 30 | 214 | 5.73e-74 | 231 |
| Msa0044420 | AT4G28320.1 | 55.376 | 186 | 82 | 1 | 9 | 193 | 42 | 227 | 1.57e-72 | 228 |
| Msa0044420 | AT2G20680.1 | 54.688 | 192 | 86 | 1 | 3 | 193 | 37 | 228 | 4.86e-72 | 226 |
| Msa0044420 | AT3G10890.1 | 51.630 | 184 | 89 | 0 | 9 | 192 | 32 | 215 | 9.95e-72 | 225 |
| Msa0044420 | AT5G66460.1 | 51.872 | 187 | 90 | 0 | 8 | 194 | 31 | 217 | 2.20e-71 | 225 |
| Msa0044420 | AT1G02310.1 | 51.872 | 187 | 83 | 3 | 9 | 193 | 30 | 211 | 4.11e-64 | 205 |
| Msa0044420 | AT1G02310.2 | 51.872 | 187 | 83 | 3 | 9 | 193 | 50 | 231 | 6.47e-64 | 206 |
| Msa0044420 | AT3G30540.1 | 41.935 | 186 | 71 | 1 | 9 | 194 | 30 | 178 | 9.28e-49 | 163 |
Find 66 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGGATTCAACACTTAT+TGG | 0.246669 | 1_1:-75977847 | Msa0044420:CDS |
| AGAAATTGAGTCATGAATTA+AGG | 0.308061 | 1_1:-75976218 | Msa0044420:CDS |
| GTTGGCCATTCACTACAAAT+TGG | 0.308540 | 1_1:+75977879 | None:intergenic |
| CTCCTCTGGTGATACGTTAC+AGG | 0.324607 | 1_1:-75977267 | Msa0044420:intron |
| TATTATCATTGGTTAACAAT+TGG | 0.335350 | 1_1:-75977610 | Msa0044420:CDS |
| CAAGGCTTGTGCTCTGTCTT+GGG | 0.338346 | 1_1:+75976310 | None:intergenic |
| GCAAGGCTTGTGCTCTGTCT+TGG | 0.340145 | 1_1:+75976309 | None:intergenic |
| ACTCACAAATATCACTTATA+AGG | 0.349810 | 1_1:-75977345 | Msa0044420:CDS |
| ATTCAACACTTATTGGTTGA+TGG | 0.357211 | 1_1:-75977840 | Msa0044420:CDS |
| ATTATCATTGGTTAACAATT+GGG | 0.370572 | 1_1:-75977609 | Msa0044420:CDS |
| GTATGACAGTTTGTAGGACT+TGG | 0.375713 | 1_1:-75977751 | Msa0044420:CDS |
| GGCCAACCTTTCTATGTCAA+TGG | 0.396915 | 1_1:-75977863 | Msa0044420:CDS |
| AATCAGACTCATATTATCAT+TGG | 0.419663 | 1_1:-75977621 | Msa0044420:CDS |
| GTCAAGTGGGGCAATGCTGC+TGG | 0.420167 | 1_1:-75977560 | Msa0044420:CDS |
| TTGAATCCATTGACATAGAA+AGG | 0.430244 | 1_1:+75977857 | None:intergenic |
| TCTCCCCATGAATGGCTGAT+TGG | 0.433378 | 1_1:+75976238 | None:intergenic |
| CAGTTGGTATGACAGTTTGT+AGG | 0.445206 | 1_1:-75977757 | Msa0044420:CDS |
| TTATGATGAAGTAGTATTCA+AGG | 0.449801 | 1_1:-75977681 | Msa0044420:CDS |
| GCTTTCCAATCAGCCATTCA+TGG | 0.450028 | 1_1:-75976243 | Msa0044420:CDS |
| GGAAACCAATTTGTAGTGAA+TGG | 0.455801 | 1_1:-75977884 | Msa0044420:CDS |
| GTTAACAATTGGGAGGCATA+TGG | 0.457775 | 1_1:-75977599 | Msa0044420:CDS |
| TGAATGGCTGATTGGAAAGC+TGG | 0.481040 | 1_1:+75976246 | None:intergenic |
| CTTTCCAATCAGCCATTCAT+GGG | 0.482851 | 1_1:-75976242 | Msa0044420:CDS |
| AGGACTTGGGCCTTCAATGA+TGG | 0.488912 | 1_1:-75977737 | Msa0044420:CDS |
| CGATGCACCTCTGACTCCTC+TGG | 0.493066 | 1_1:-75977281 | Msa0044420:CDS |
| ACTCAATTTCTCCCCATGAA+TGG | 0.495559 | 1_1:+75976230 | None:intergenic |
| TTTCACTCACCACAAAATCC+AGG | 0.498414 | 1_1:+75977657 | None:intergenic |
| GTGAAATGGAGGAAGATGAA+TGG | 0.499830 | 1_1:-75977925 | None:intergenic |
| TCTCCATTGACCATCATTGA+AGG | 0.500587 | 1_1:+75977727 | None:intergenic |
| TATGACAGTTTGTAGGACTT+GGG | 0.504511 | 1_1:-75977750 | Msa0044420:CDS |
| TGGCAGATGGTGCAAAAGAA+AGG | 0.506336 | 1_1:-75977905 | Msa0044420:CDS |
| TGAAGTAGTATTCAAGGCCC+TGG | 0.508682 | 1_1:-75977675 | Msa0044420:CDS |
| ATCCATTGACATAGAAAGGT+TGG | 0.514039 | 1_1:+75977861 | None:intergenic |
| TTGTAGTAGCCTCTGAGAGT+TGG | 0.519117 | 1_1:+75977500 | None:intergenic |
| ACCTCACAAGAGAGATTGCA+TGG | 0.528917 | 1_1:-75976191 | Msa0044420:CDS |
| GCAAAGCACAGTATGTCAAG+TGG | 0.532392 | 1_1:-75977574 | Msa0044420:CDS |
| GGGCCTTCAATGATGGTCAA+TGG | 0.538506 | 1_1:-75977730 | Msa0044420:CDS |
| CATCATCAGAGGTCAAGTTA+AGG | 0.540046 | 1_1:+75977537 | None:intergenic |
| CGGATGAGTCGACAAGAGGA+AGG | 0.554210 | 1_1:-75977808 | Msa0044420:CDS |
| AAAGTGATGGTGATTTCTGA+AGG | 0.556976 | 1_1:+75977702 | None:intergenic |
| CAAAGCACAGTATGTCAAGT+GGG | 0.561874 | 1_1:-75977573 | Msa0044420:CDS |
| TTCAAACATGCATCCTCAGT+TGG | 0.569301 | 1_1:-75977773 | Msa0044420:CDS |
| AAAATTGATATGCAATGGCA+AGG | 0.577934 | 1_1:+75976292 | None:intergenic |
| ATCATTGGTTAACAATTGGG+AGG | 0.578607 | 1_1:-75977606 | Msa0044420:CDS |
| AACTCTCAGAGGCTACTACA+AGG | 0.578621 | 1_1:-75977498 | Msa0044420:CDS |
| GACAAGAGGAAGGGTCACTC+AGG | 0.585832 | 1_1:-75977798 | Msa0044420:CDS |
| CGTATCACCAGAGGAGTCAG+AGG | 0.597961 | 1_1:+75977274 | None:intergenic |
| TTCACTCACCACAAAATCCA+GGG | 0.604887 | 1_1:+75977658 | None:intergenic |
| TTCTCACATCCAACTCTCAG+AGG | 0.605503 | 1_1:-75977509 | Msa0044420:CDS |
| ACTACTTCATCATAAAGTGA+TGG | 0.615191 | 1_1:+75977689 | None:intergenic |
| AACAATTGGGAGGCATATGG+TGG | 0.626650 | 1_1:-75977596 | Msa0044420:CDS |
| CCCATGCAATCTCTCTTGTG+AGG | 0.635677 | 1_1:+75976190 | None:intergenic |
| TTGGTTGATGGTATTTGCTG+CGG | 0.640214 | 1_1:-75977828 | Msa0044420:CDS |
| GCTGCGGATGAGTCGACAAG+AGG | 0.648322 | 1_1:-75977812 | Msa0044420:CDS |
| AAGTGATGGTGATTTCTGAA+GGG | 0.650216 | 1_1:+75977703 | None:intergenic |
| GTAATAAAATTGATATGCAA+TGG | 0.655248 | 1_1:+75976287 | None:intergenic |
| TCAAGGAACTTACCTTGACA+TGG | 0.657148 | 1_1:+75977474 | None:intergenic |
| TTTCCAATCAGCCATTCATG+GGG | 0.658572 | 1_1:-75976241 | Msa0044420:CDS |
| CTACTACAAGGACCATGTCA+AGG | 0.659291 | 1_1:-75977486 | Msa0044420:intron |
| GGATGAGTCGACAAGAGGAA+GGG | 0.663089 | 1_1:-75977807 | Msa0044420:CDS |
| ACAAACTGTCATACCAACTG+AGG | 0.663360 | 1_1:+75977760 | None:intergenic |
| GGAGGAAGATGAATGGCAGA+TGG | 0.665469 | 1_1:-75977918 | Msa0044420:CDS |
| CCTCACAAGAGAGATTGCAT+GGG | 0.673750 | 1_1:-75976190 | Msa0044420:CDS |
| AAAGCACAGTATGTCAAGTG+GGG | 0.694927 | 1_1:-75977572 | Msa0044420:CDS |
| TACCTGTAACGTATCACCAG+AGG | 0.699288 | 1_1:+75977265 | None:intergenic |
| GAGGAGTCAGAGGTGCATCG+AGG | 0.724283 | 1_1:+75977284 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | + | chr1_1:75976674-75976693 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | - | chr1_1:75976674-75976693 | Msa0044420:intron | 15.0% |
| !!! | AAATTGTAATGTTTTTTTGA+TGG | + | chr1_1:75977426-75977445 | None:intergenic | 15.0% |
| !!! | ATTACAATTTTTGATTATCT+AGG | - | chr1_1:75977436-75977455 | Msa0044420:intron | 15.0% |
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | + | chr1_1:75976674-75976693 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | - | chr1_1:75976674-75976693 | Msa0044420:intron | 15.0% |
| !!! | AAATTGTAATGTTTTTTTGA+TGG | + | chr1_1:75977426-75977445 | None:intergenic | 15.0% |
| !!! | ATTACAATTTTTGATTATCT+AGG | - | chr1_1:75977436-75977455 | Msa0044420:intron | 15.0% |
| !!! | TATTATCATTGGTTAACAAT+TGG | - | chr1_1:75976489-75976508 | Msa0044420:intron | 20.0% |
| !!! | ATTATCATTGGTTAACAATT+GGG | - | chr1_1:75976490-75976509 | Msa0044420:intron | 20.0% |
| !! | CTAAAGACATACTAAATAAT+TGG | + | chr1_1:75977013-75977032 | None:intergenic | 20.0% |
| !!! | GTTAATTATTTGTTACGATA+TGG | - | chr1_1:75977095-75977114 | Msa0044420:intron | 20.0% |
| !!! | ATATAGTCACAATTTTACAT+AGG | + | chr1_1:75977195-75977214 | None:intergenic | 20.0% |
| !!! | ATTCCATTAATTTTGTTGTA+AGG | - | chr1_1:75977324-75977343 | Msa0044420:CDS | 20.0% |
| !!! | CATTGATTTCAATATAAAGT+TGG | + | chr1_1:75977530-75977549 | None:intergenic | 20.0% |
| !! | CAACTTTATATTGAAATCAA+TGG | - | chr1_1:75977528-75977547 | Msa0044420:CDS | 20.0% |
| !!! | ATATTTTTCTTGTATTAGTG+TGG | - | chr1_1:75977760-75977779 | Msa0044420:CDS | 20.0% |
| !! | GTAATAAAATTGATATGCAA+TGG | + | chr1_1:75977815-75977834 | None:intergenic | 20.0% |
| !!! | TATTATCATTGGTTAACAAT+TGG | - | chr1_1:75976489-75976508 | Msa0044420:intron | 20.0% |
| !!! | ATTATCATTGGTTAACAATT+GGG | - | chr1_1:75976490-75976509 | Msa0044420:intron | 20.0% |
| !! | CTAAAGACATACTAAATAAT+TGG | + | chr1_1:75977013-75977032 | None:intergenic | 20.0% |
| !!! | GTTAATTATTTGTTACGATA+TGG | - | chr1_1:75977095-75977114 | Msa0044420:intron | 20.0% |
| !!! | ATATAGTCACAATTTTACAT+AGG | + | chr1_1:75977195-75977214 | None:intergenic | 20.0% |
| !!! | ATTCCATTAATTTTGTTGTA+AGG | - | chr1_1:75977324-75977343 | Msa0044420:CDS | 20.0% |
| !!! | CATTGATTTCAATATAAAGT+TGG | + | chr1_1:75977530-75977549 | None:intergenic | 20.0% |
| !! | CAACTTTATATTGAAATCAA+TGG | - | chr1_1:75977528-75977547 | Msa0044420:CDS | 20.0% |
| !!! | ATATTTTTCTTGTATTAGTG+TGG | - | chr1_1:75977760-75977779 | Msa0044420:CDS | 20.0% |
| !! | GTAATAAAATTGATATGCAA+TGG | + | chr1_1:75977815-75977834 | None:intergenic | 20.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | - | chr1_1:75976418-75976437 | Msa0044420:intron | 25.0% |
| ! | AATCAGACTCATATTATCAT+TGG | - | chr1_1:75976478-75976497 | Msa0044420:intron | 25.0% |
| !! | AACAGGAAGAATTAAGTTTT+AGG | + | chr1_1:75976657-75976676 | None:intergenic | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | + | chr1_1:75976702-75976721 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | - | chr1_1:75976754-75976773 | Msa0044420:intron | 25.0% |
| !! | AGTTCAAAGATAATTTGTGT+TGG | - | chr1_1:75976883-75976902 | Msa0044420:intron | 25.0% |
| ! | AAGACATACTAAATAATTGG+AGG | + | chr1_1:75977010-75977029 | None:intergenic | 25.0% |
| ! | TGGTCAGTTATGTTAAAAAA+TGG | - | chr1_1:75977040-75977059 | Msa0044420:intron | 25.0% |
| !!! | GAATTTTGGAAAAAAAAGTG+TGG | - | chr1_1:75977073-75977092 | Msa0044420:intron | 25.0% |
| ! | GACTATATGCTTCAATTATT+TGG | - | chr1_1:75977207-75977226 | Msa0044420:intron | 25.0% |
| !!! | ACATAACAAATAGTCACTTT+TGG | + | chr1_1:75977291-75977310 | None:intergenic | 25.0% |
| ! | CAACCTTACAACAAAATTAA+TGG | + | chr1_1:75977330-75977349 | None:intergenic | 25.0% |
| !!! | AAGGTTGATAAACTTATAGA+AGG | - | chr1_1:75977343-75977362 | Msa0044420:CDS | 25.0% |
| ! | TCAATATAAAGTTGGATAGA+TGG | + | chr1_1:75977522-75977541 | None:intergenic | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr1_1:75977737-75977756 | Msa0044420:CDS | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | chr1_1:75977881-75977900 | Msa0044420:CDS | 25.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | - | chr1_1:75976418-75976437 | Msa0044420:intron | 25.0% |
| ! | AATCAGACTCATATTATCAT+TGG | - | chr1_1:75976478-75976497 | Msa0044420:intron | 25.0% |
| !! | AACAGGAAGAATTAAGTTTT+AGG | + | chr1_1:75976657-75976676 | None:intergenic | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | + | chr1_1:75976702-75976721 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | - | chr1_1:75976754-75976773 | Msa0044420:intron | 25.0% |
| !! | AGTTCAAAGATAATTTGTGT+TGG | - | chr1_1:75976883-75976902 | Msa0044420:intron | 25.0% |
| ! | AAGACATACTAAATAATTGG+AGG | + | chr1_1:75977010-75977029 | None:intergenic | 25.0% |
| ! | TGGTCAGTTATGTTAAAAAA+TGG | - | chr1_1:75977040-75977059 | Msa0044420:intron | 25.0% |
| !!! | GAATTTTGGAAAAAAAAGTG+TGG | - | chr1_1:75977073-75977092 | Msa0044420:intron | 25.0% |
| ! | GACTATATGCTTCAATTATT+TGG | - | chr1_1:75977207-75977226 | Msa0044420:intron | 25.0% |
| !!! | ACATAACAAATAGTCACTTT+TGG | + | chr1_1:75977291-75977310 | None:intergenic | 25.0% |
| ! | CAACCTTACAACAAAATTAA+TGG | + | chr1_1:75977330-75977349 | None:intergenic | 25.0% |
| !!! | AAGGTTGATAAACTTATAGA+AGG | - | chr1_1:75977343-75977362 | Msa0044420:CDS | 25.0% |
| ! | TCAATATAAAGTTGGATAGA+TGG | + | chr1_1:75977522-75977541 | None:intergenic | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr1_1:75977737-75977756 | Msa0044420:CDS | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | chr1_1:75977881-75977900 | Msa0044420:CDS | 25.0% |
| TTGAATCCATTGACATAGAA+AGG | + | chr1_1:75976245-75976264 | None:intergenic | 30.0% | |
| ! | TCAATGGATTCAACACTTAT+TGG | - | chr1_1:75976252-75976271 | Msa0044420:CDS | 30.0% |
| ! | ATTCAACACTTATTGGTTGA+TGG | - | chr1_1:75976259-75976278 | Msa0044420:CDS | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | + | chr1_1:75976413-75976432 | None:intergenic | 30.0% | |
| !!! | TAAGTTTTAGGTACATCTCA+AGG | + | chr1_1:75976645-75976664 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | - | chr1_1:75976777-75976796 | Msa0044420:intron | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | - | chr1_1:75976778-75976797 | Msa0044420:intron | 30.0% |
| ACTGAGAAAATAACAATGAG+AGG | + | chr1_1:75976970-75976989 | None:intergenic | 30.0% | |
| AGTATGTCTTTAGTGATTTG+TGG | - | chr1_1:75977020-75977039 | Msa0044420:intron | 30.0% | |
| TGTTAAAAAATGGCTAAGTG+TGG | - | chr1_1:75977050-75977069 | Msa0044420:intron | 30.0% | |
| GTTAAAAAATGGCTAAGTGT+GGG | - | chr1_1:75977051-75977070 | Msa0044420:intron | 30.0% | |
| TGGGGAATAGTTAAAAAAGA+TGG | - | chr1_1:75977164-75977183 | Msa0044420:intron | 30.0% | |
| GCTTCAATTATTTGGTTACT+TGG | - | chr1_1:75977215-75977234 | Msa0044420:intron | 30.0% | |
| !! | TTGTGCTTGTTGTTTATTAC+AGG | - | chr1_1:75977485-75977504 | Msa0044420:intron | 30.0% |
| AAACTCAAAGCATGTACTTT+CGG | + | chr1_1:75977572-75977591 | None:intergenic | 30.0% | |
| ACATCATACATTTCAATTGC+TGG | + | chr1_1:75977610-75977629 | None:intergenic | 30.0% | |
| ! | TCTAGAATTTATCATCTGCT+TGG | - | chr1_1:75977636-75977655 | Msa0044420:CDS | 30.0% |
| !! | TTGGCTTTAATAAGATGCTT+TGG | - | chr1_1:75977655-75977674 | Msa0044420:CDS | 30.0% |
| AAAATTGATATGCAATGGCA+AGG | + | chr1_1:75977810-75977829 | None:intergenic | 30.0% | |
| TTGAATCCATTGACATAGAA+AGG | + | chr1_1:75976245-75976264 | None:intergenic | 30.0% | |
| ! | TCAATGGATTCAACACTTAT+TGG | - | chr1_1:75976252-75976271 | Msa0044420:CDS | 30.0% |
| ! | ATTCAACACTTATTGGTTGA+TGG | - | chr1_1:75976259-75976278 | Msa0044420:CDS | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | + | chr1_1:75976413-75976432 | None:intergenic | 30.0% | |
| !!! | TAAGTTTTAGGTACATCTCA+AGG | + | chr1_1:75976645-75976664 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | - | chr1_1:75976777-75976796 | Msa0044420:intron | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | - | chr1_1:75976778-75976797 | Msa0044420:intron | 30.0% |
| ACTGAGAAAATAACAATGAG+AGG | + | chr1_1:75976970-75976989 | None:intergenic | 30.0% | |
| AGTATGTCTTTAGTGATTTG+TGG | - | chr1_1:75977020-75977039 | Msa0044420:intron | 30.0% | |
| TGTTAAAAAATGGCTAAGTG+TGG | - | chr1_1:75977050-75977069 | Msa0044420:intron | 30.0% | |
| GTTAAAAAATGGCTAAGTGT+GGG | - | chr1_1:75977051-75977070 | Msa0044420:intron | 30.0% | |
| TGGGGAATAGTTAAAAAAGA+TGG | - | chr1_1:75977164-75977183 | Msa0044420:intron | 30.0% | |
| GCTTCAATTATTTGGTTACT+TGG | - | chr1_1:75977215-75977234 | Msa0044420:intron | 30.0% | |
| !! | TTGTGCTTGTTGTTTATTAC+AGG | - | chr1_1:75977485-75977504 | Msa0044420:intron | 30.0% |
| AAACTCAAAGCATGTACTTT+CGG | + | chr1_1:75977572-75977591 | None:intergenic | 30.0% | |
| ACATCATACATTTCAATTGC+TGG | + | chr1_1:75977610-75977629 | None:intergenic | 30.0% | |
| ! | TCTAGAATTTATCATCTGCT+TGG | - | chr1_1:75977636-75977655 | Msa0044420:CDS | 30.0% |
| !! | TTGGCTTTAATAAGATGCTT+TGG | - | chr1_1:75977655-75977674 | Msa0044420:CDS | 30.0% |
| AAAATTGATATGCAATGGCA+AGG | + | chr1_1:75977810-75977829 | None:intergenic | 30.0% | |
| GGAAACCAATTTGTAGTGAA+TGG | - | chr1_1:75976215-75976234 | Msa0044420:CDS | 35.0% | |
| ATCCATTGACATAGAAAGGT+TGG | + | chr1_1:75976241-75976260 | None:intergenic | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | - | chr1_1:75976349-75976368 | Msa0044420:intron | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | + | chr1_1:75976399-75976418 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | + | chr1_1:75976400-75976419 | None:intergenic | 35.0% |
| ! | ATCATTGGTTAACAATTGGG+AGG | - | chr1_1:75976493-75976512 | Msa0044420:intron | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | + | chr1_1:75976576-75976595 | None:intergenic | 35.0% | |
| TCGAGCAAGCATATAATTGA+TGG | - | chr1_1:75977144-75977163 | Msa0044420:intron | 35.0% | |
| CGAGCAAGCATATAATTGAT+GGG | - | chr1_1:75977145-75977164 | Msa0044420:intron | 35.0% | |
| GAGCAAGCATATAATTGATG+GGG | - | chr1_1:75977146-75977165 | Msa0044420:intron | 35.0% | |
| GCACAAACTACATATGAGAA+GGG | + | chr1_1:75977471-75977490 | None:intergenic | 35.0% | |
| AGCACAAACTACATATGAGA+AGG | + | chr1_1:75977472-75977491 | None:intergenic | 35.0% | |
| ! | GTACATGCTTTGAGTTTCTA+TGG | - | chr1_1:75977575-75977594 | Msa0044420:CDS | 35.0% |
| TCATACATTTCAATTGCTGG+TGG | + | chr1_1:75977607-75977626 | None:intergenic | 35.0% | |
| GGAAACCAATTTGTAGTGAA+TGG | - | chr1_1:75976215-75976234 | Msa0044420:CDS | 35.0% | |
| ATCCATTGACATAGAAAGGT+TGG | + | chr1_1:75976241-75976260 | None:intergenic | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | - | chr1_1:75976349-75976368 | Msa0044420:intron | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | + | chr1_1:75976399-75976418 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | + | chr1_1:75976400-75976419 | None:intergenic | 35.0% |
| ! | ATCATTGGTTAACAATTGGG+AGG | - | chr1_1:75976493-75976512 | Msa0044420:intron | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | + | chr1_1:75976576-75976595 | None:intergenic | 35.0% | |
| TCGAGCAAGCATATAATTGA+TGG | - | chr1_1:75977144-75977163 | Msa0044420:intron | 35.0% | |
| CGAGCAAGCATATAATTGAT+GGG | - | chr1_1:75977145-75977164 | Msa0044420:intron | 35.0% | |
| GAGCAAGCATATAATTGATG+GGG | - | chr1_1:75977146-75977165 | Msa0044420:intron | 35.0% | |
| GCACAAACTACATATGAGAA+GGG | + | chr1_1:75977471-75977490 | None:intergenic | 35.0% | |
| AGCACAAACTACATATGAGA+AGG | + | chr1_1:75977472-75977491 | None:intergenic | 35.0% | |
| ! | GTACATGCTTTGAGTTTCTA+TGG | - | chr1_1:75977575-75977594 | Msa0044420:CDS | 35.0% |
| TCATACATTTCAATTGCTGG+TGG | + | chr1_1:75977607-75977626 | None:intergenic | 35.0% | |
| GTTGGCCATTCACTACAAAT+TGG | + | chr1_1:75976223-75976242 | None:intergenic | 40.0% | |
| !! | TTGGTTGATGGTATTTGCTG+CGG | - | chr1_1:75976271-75976290 | Msa0044420:CDS | 40.0% |
| TTCAAACATGCATCCTCAGT+TGG | - | chr1_1:75976326-75976345 | Msa0044420:intron | 40.0% | |
| ACAAACTGTCATACCAACTG+AGG | + | chr1_1:75976342-75976361 | None:intergenic | 40.0% | |
| ! | CAGTTGGTATGACAGTTTGT+AGG | - | chr1_1:75976342-75976361 | Msa0044420:intron | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | - | chr1_1:75976348-75976367 | Msa0044420:intron | 40.0% | |
| TCTCCATTGACCATCATTGA+AGG | + | chr1_1:75976375-75976394 | None:intergenic | 40.0% | |
| TTCACTCACCACAAAATCCA+GGG | + | chr1_1:75976444-75976463 | None:intergenic | 40.0% | |
| TTTCACTCACCACAAAATCC+AGG | + | chr1_1:75976445-75976464 | None:intergenic | 40.0% | |
| ! | GTTAACAATTGGGAGGCATA+TGG | - | chr1_1:75976500-75976519 | Msa0044420:intron | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | - | chr1_1:75976526-75976545 | Msa0044420:intron | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | - | chr1_1:75976527-75976546 | Msa0044420:intron | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | + | chr1_1:75976565-75976584 | None:intergenic | 40.0% | |
| TCAAGGAACTTACCTTGACA+TGG | + | chr1_1:75976628-75976647 | None:intergenic | 40.0% | |
| AGCTCCCAAGCAAAAATTGT+TGG | + | chr1_1:75976785-75976804 | None:intergenic | 40.0% | |
| ! | ATGGCTAAGTGTGGGAATTT+TGG | - | chr1_1:75977059-75977078 | Msa0044420:intron | 40.0% |
| CTTTCCAATCAGCCATTCAT+GGG | - | chr1_1:75977857-75977876 | Msa0044420:CDS | 40.0% | |
| TTTCCAATCAGCCATTCATG+GGG | - | chr1_1:75977858-75977877 | Msa0044420:CDS | 40.0% | |
| ACTCAATTTCTCCCCATGAA+TGG | + | chr1_1:75977872-75977891 | None:intergenic | 40.0% | |
| ! | GAGAGATTGCATGGGTTTTT+CGG | - | chr1_1:75977917-75977936 | Msa0044420:CDS | 40.0% |
| GTTGGCCATTCACTACAAAT+TGG | + | chr1_1:75976223-75976242 | None:intergenic | 40.0% | |
| !! | TTGGTTGATGGTATTTGCTG+CGG | - | chr1_1:75976271-75976290 | Msa0044420:CDS | 40.0% |
| TTCAAACATGCATCCTCAGT+TGG | - | chr1_1:75976326-75976345 | Msa0044420:intron | 40.0% | |
| ACAAACTGTCATACCAACTG+AGG | + | chr1_1:75976342-75976361 | None:intergenic | 40.0% | |
| ! | CAGTTGGTATGACAGTTTGT+AGG | - | chr1_1:75976342-75976361 | Msa0044420:intron | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | - | chr1_1:75976348-75976367 | Msa0044420:intron | 40.0% | |
| TCTCCATTGACCATCATTGA+AGG | + | chr1_1:75976375-75976394 | None:intergenic | 40.0% | |
| TTCACTCACCACAAAATCCA+GGG | + | chr1_1:75976444-75976463 | None:intergenic | 40.0% | |
| TTTCACTCACCACAAAATCC+AGG | + | chr1_1:75976445-75976464 | None:intergenic | 40.0% | |
| ! | GTTAACAATTGGGAGGCATA+TGG | - | chr1_1:75976500-75976519 | Msa0044420:intron | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | - | chr1_1:75976526-75976545 | Msa0044420:intron | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | - | chr1_1:75976527-75976546 | Msa0044420:intron | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | + | chr1_1:75976565-75976584 | None:intergenic | 40.0% | |
| TCAAGGAACTTACCTTGACA+TGG | + | chr1_1:75976628-75976647 | None:intergenic | 40.0% | |
| AGCTCCCAAGCAAAAATTGT+TGG | + | chr1_1:75976785-75976804 | None:intergenic | 40.0% | |
| ! | ATGGCTAAGTGTGGGAATTT+TGG | - | chr1_1:75977059-75977078 | Msa0044420:intron | 40.0% |
| CTTTCCAATCAGCCATTCAT+GGG | - | chr1_1:75977857-75977876 | Msa0044420:CDS | 40.0% | |
| TTTCCAATCAGCCATTCATG+GGG | - | chr1_1:75977858-75977877 | Msa0044420:CDS | 40.0% | |
| ACTCAATTTCTCCCCATGAA+TGG | + | chr1_1:75977872-75977891 | None:intergenic | 40.0% | |
| ! | GAGAGATTGCATGGGTTTTT+CGG | - | chr1_1:75977917-75977936 | Msa0044420:CDS | 40.0% |
| TGGCAGATGGTGCAAAAGAA+AGG | - | chr1_1:75976194-75976213 | Msa0044420:CDS | 45.0% | |
| GGCCAACCTTTCTATGTCAA+TGG | - | chr1_1:75976236-75976255 | Msa0044420:CDS | 45.0% | |
| TGAAGTAGTATTCAAGGCCC+TGG | - | chr1_1:75976424-75976443 | Msa0044420:intron | 45.0% | |
| ! | ATTCAAGGCCCTGGATTTTG+TGG | - | chr1_1:75976433-75976452 | Msa0044420:intron | 45.0% |
| ! | AACAATTGGGAGGCATATGG+TGG | - | chr1_1:75976503-75976522 | Msa0044420:intron | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | - | chr1_1:75976525-75976544 | Msa0044420:intron | 45.0% | |
| TTCTCACATCCAACTCTCAG+AGG | - | chr1_1:75976590-75976609 | Msa0044420:intron | 45.0% | |
| ! | TTGTAGTAGCCTCTGAGAGT+TGG | + | chr1_1:75976602-75976621 | None:intergenic | 45.0% |
| AACTCTCAGAGGCTACTACA+AGG | - | chr1_1:75976601-75976620 | Msa0044420:intron | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | - | chr1_1:75976613-75976632 | Msa0044420:intron | 45.0% | |
| TACCTGTAACGTATCACCAG+AGG | + | chr1_1:75976837-75976856 | None:intergenic | 45.0% | |
| TGAATGGCTGATTGGAAAGC+TGG | + | chr1_1:75977856-75977875 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCCATTCA+TGG | - | chr1_1:75977856-75977875 | Msa0044420:CDS | 45.0% | |
| ACCTCACAAGAGAGATTGCA+TGG | - | chr1_1:75977908-75977927 | Msa0044420:CDS | 45.0% | |
| CCTCACAAGAGAGATTGCAT+GGG | - | chr1_1:75977909-75977928 | Msa0044420:CDS | 45.0% | |
| TGGCAGATGGTGCAAAAGAA+AGG | - | chr1_1:75976194-75976213 | Msa0044420:CDS | 45.0% | |
| GGCCAACCTTTCTATGTCAA+TGG | - | chr1_1:75976236-75976255 | Msa0044420:CDS | 45.0% | |
| TGAAGTAGTATTCAAGGCCC+TGG | - | chr1_1:75976424-75976443 | Msa0044420:intron | 45.0% | |
| ! | ATTCAAGGCCCTGGATTTTG+TGG | - | chr1_1:75976433-75976452 | Msa0044420:intron | 45.0% |
| ! | AACAATTGGGAGGCATATGG+TGG | - | chr1_1:75976503-75976522 | Msa0044420:intron | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | - | chr1_1:75976525-75976544 | Msa0044420:intron | 45.0% | |
| TTCTCACATCCAACTCTCAG+AGG | - | chr1_1:75976590-75976609 | Msa0044420:intron | 45.0% | |
| ! | TTGTAGTAGCCTCTGAGAGT+TGG | + | chr1_1:75976602-75976621 | None:intergenic | 45.0% |
| AACTCTCAGAGGCTACTACA+AGG | - | chr1_1:75976601-75976620 | Msa0044420:intron | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | - | chr1_1:75976613-75976632 | Msa0044420:intron | 45.0% | |
| TACCTGTAACGTATCACCAG+AGG | + | chr1_1:75976837-75976856 | None:intergenic | 45.0% | |
| TGAATGGCTGATTGGAAAGC+TGG | + | chr1_1:75977856-75977875 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCCATTCA+TGG | - | chr1_1:75977856-75977875 | Msa0044420:CDS | 45.0% | |
| ACCTCACAAGAGAGATTGCA+TGG | - | chr1_1:75977908-75977927 | Msa0044420:CDS | 45.0% | |
| CCTCACAAGAGAGATTGCAT+GGG | - | chr1_1:75977909-75977928 | Msa0044420:CDS | 45.0% | |
| GGAGGAAGATGAATGGCAGA+TGG | - | chr1_1:75976181-75976200 | Msa0044420:CDS | 50.0% | |
| GGATGAGTCGACAAGAGGAA+GGG | - | chr1_1:75976292-75976311 | Msa0044420:CDS | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | - | chr1_1:75976362-75976381 | Msa0044420:intron | 50.0% | |
| GGGCCTTCAATGATGGTCAA+TGG | - | chr1_1:75976369-75976388 | Msa0044420:intron | 50.0% | |
| CTCCTCTGGTGATACGTTAC+AGG | - | chr1_1:75976832-75976851 | Msa0044420:intron | 50.0% | |
| CAAGGCTTGTGCTCTGTCTT+GGG | + | chr1_1:75977792-75977811 | None:intergenic | 50.0% | |
| TCTCCCCATGAATGGCTGAT+TGG | + | chr1_1:75977864-75977883 | None:intergenic | 50.0% | |
| CCCATGCAATCTCTCTTGTG+AGG | + | chr1_1:75977912-75977931 | None:intergenic | 50.0% | |
| GGAGGAAGATGAATGGCAGA+TGG | - | chr1_1:75976181-75976200 | Msa0044420:CDS | 50.0% | |
| GGATGAGTCGACAAGAGGAA+GGG | - | chr1_1:75976292-75976311 | Msa0044420:CDS | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | - | chr1_1:75976362-75976381 | Msa0044420:intron | 50.0% | |
| GGGCCTTCAATGATGGTCAA+TGG | - | chr1_1:75976369-75976388 | Msa0044420:intron | 50.0% | |
| CTCCTCTGGTGATACGTTAC+AGG | - | chr1_1:75976832-75976851 | Msa0044420:intron | 50.0% | |
| CAAGGCTTGTGCTCTGTCTT+GGG | + | chr1_1:75977792-75977811 | None:intergenic | 50.0% | |
| TCTCCCCATGAATGGCTGAT+TGG | + | chr1_1:75977864-75977883 | None:intergenic | 50.0% | |
| CCCATGCAATCTCTCTTGTG+AGG | + | chr1_1:75977912-75977931 | None:intergenic | 50.0% | |
| CGGATGAGTCGACAAGAGGA+AGG | - | chr1_1:75976291-75976310 | Msa0044420:CDS | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | - | chr1_1:75976301-75976320 | Msa0044420:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | + | chr1_1:75976828-75976847 | None:intergenic | 55.0% | |
| GCAAGGCTTGTGCTCTGTCT+TGG | + | chr1_1:75977793-75977812 | None:intergenic | 55.0% | |
| CGGATGAGTCGACAAGAGGA+AGG | - | chr1_1:75976291-75976310 | Msa0044420:CDS | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | - | chr1_1:75976301-75976320 | Msa0044420:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | + | chr1_1:75976828-75976847 | None:intergenic | 55.0% | |
| GCAAGGCTTGTGCTCTGTCT+TGG | + | chr1_1:75977793-75977812 | None:intergenic | 55.0% | |
| GCTGCGGATGAGTCGACAAG+AGG | - | chr1_1:75976287-75976306 | Msa0044420:CDS | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | - | chr1_1:75976539-75976558 | Msa0044420:intron | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | + | chr1_1:75976818-75976837 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | - | chr1_1:75976818-75976837 | Msa0044420:intron | 60.0% | |
| GCTGCGGATGAGTCGACAAG+AGG | - | chr1_1:75976287-75976306 | Msa0044420:CDS | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | - | chr1_1:75976539-75976558 | Msa0044420:intron | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | + | chr1_1:75976818-75976837 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | - | chr1_1:75976818-75976837 | Msa0044420:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 75976179 | 75977942 | 75976179 | ID=Msa0044420;Name=Msa0044420 |
| chr1_1 | mRNA | 75976179 | 75977942 | 75976179 | ID=Msa0044420-mRNA-1;Parent=Msa0044420;Name=Msa0044420-mRNA-1;_AED=0.20;_eAED=0.31;_QI=0|0|0|1|1|1|3|0|247 |
| chr1_1 | exon | 75977487 | 75977942 | 75977487 | ID=Msa0044420-mRNA-1:exon:25725;Parent=Msa0044420-mRNA-1 |
| chr1_1 | exon | 75977268 | 75977390 | 75977268 | ID=Msa0044420-mRNA-1:exon:25724;Parent=Msa0044420-mRNA-1 |
| chr1_1 | exon | 75976179 | 75976343 | 75976179 | ID=Msa0044420-mRNA-1:exon:25723;Parent=Msa0044420-mRNA-1 |
| chr1_1 | CDS | 75977487 | 75977942 | 75977487 | ID=Msa0044420-mRNA-1:cds;Parent=Msa0044420-mRNA-1 |
| chr1_1 | CDS | 75977268 | 75977390 | 75977268 | ID=Msa0044420-mRNA-1:cds;Parent=Msa0044420-mRNA-1 |
| chr1_1 | CDS | 75976179 | 75976343 | 75976179 | ID=Msa0044420-mRNA-1:cds;Parent=Msa0044420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
