Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090700 | XP_039685617.1 | 96.891 | 193 | 6 | 0 | 1 | 193 | 39 | 231 | 4.26e-134 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090700 | sp|Q9LZV3|MAN6_ARATH | 80.628 | 191 | 37 | 0 | 3 | 193 | 42 | 232 | 2.66e-115 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090700 | A0A396GII3 | 96.891 | 193 | 6 | 0 | 1 | 193 | 55 | 247 | 3.71e-134 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044420 | Msa0090700 | 0.964235 | 4.507105e-123 | -8.615850e-47 |
| Msa0090700 | Msa0113040 | 0.885815 | 5.871641e-72 | -8.615850e-47 |
| Msa0090700 | Msa0173990 | 0.803962 | 2.714291e-49 | -8.615850e-47 |
| Msa0090700 | Msa0183550 | 0.905001 | 6.806583e-80 | -8.615850e-47 |
| Msa0090700 | Msa0323080 | 0.803857 | 2.854051e-49 | -8.615850e-47 |
| Msa0090700 | Msa1248270 | 0.814321 | 1.635262e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090700 | MtrunA17_Chr8g0334501 | 96.891 | 193 | 6 | 0 | 1 | 193 | 55 | 247 | 7.14e-138 | 395 |
| Msa0090700 | MtrunA17_Chr7g0245051 | 87.047 | 193 | 25 | 0 | 1 | 193 | 52 | 244 | 1.37e-125 | 364 |
| Msa0090700 | MtrunA17_Chr7g0245101 | 81.865 | 193 | 35 | 0 | 1 | 193 | 53 | 245 | 2.36e-117 | 343 |
| Msa0090700 | MtrunA17_Chr7g0271511 | 59.677 | 186 | 75 | 0 | 8 | 193 | 62 | 247 | 7.02e-81 | 249 |
| Msa0090700 | MtrunA17_Chr1g0193531 | 59.459 | 185 | 74 | 1 | 9 | 193 | 30 | 213 | 2.19e-79 | 244 |
| Msa0090700 | MtrunA17_Chr4g0040121 | 56.477 | 193 | 83 | 1 | 2 | 193 | 33 | 225 | 4.14e-79 | 244 |
| Msa0090700 | MtrunA17_Chr4g0020521 | 56.522 | 184 | 80 | 0 | 9 | 192 | 35 | 218 | 7.00e-79 | 243 |
| Msa0090700 | MtrunA17_Chr1g0193611 | 57.838 | 185 | 78 | 0 | 9 | 193 | 33 | 217 | 1.43e-78 | 242 |
| Msa0090700 | MtrunA17_Chr5g0404601 | 58.824 | 187 | 76 | 1 | 8 | 193 | 31 | 217 | 2.92e-77 | 239 |
| Msa0090700 | MtrunA17_Chr1g0193551 | 58.065 | 186 | 77 | 1 | 8 | 193 | 35 | 219 | 3.18e-77 | 238 |
| Msa0090700 | MtrunA17_Chr3g0141751 | 52.332 | 193 | 91 | 1 | 1 | 193 | 20 | 211 | 5.36e-76 | 236 |
| Msa0090700 | MtrunA17_Chr1g0193601 | 57.297 | 185 | 79 | 0 | 9 | 193 | 33 | 217 | 3.12e-75 | 233 |
| Msa0090700 | MtrunA17_Chr1g0193541 | 59.322 | 177 | 70 | 1 | 9 | 183 | 32 | 208 | 8.44e-75 | 232 |
| Msa0090700 | MtrunA17_Chr2g0324441 | 54.404 | 193 | 87 | 1 | 2 | 193 | 34 | 226 | 4.99e-73 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090700 | AT5G01930.1 | 80.628 | 191 | 37 | 0 | 3 | 193 | 42 | 232 | 2.70e-116 | 340 |
| Msa0090700 | AT3G10900.1 | 54.595 | 185 | 83 | 1 | 9 | 192 | 30 | 214 | 5.73e-74 | 231 |
| Msa0090700 | AT4G28320.1 | 55.376 | 186 | 82 | 1 | 9 | 193 | 42 | 227 | 1.57e-72 | 228 |
| Msa0090700 | AT2G20680.1 | 54.688 | 192 | 86 | 1 | 3 | 193 | 37 | 228 | 4.86e-72 | 226 |
| Msa0090700 | AT3G10890.1 | 51.630 | 184 | 89 | 0 | 9 | 192 | 32 | 215 | 9.95e-72 | 225 |
| Msa0090700 | AT5G66460.1 | 51.872 | 187 | 90 | 0 | 8 | 194 | 31 | 217 | 2.20e-71 | 225 |
| Msa0090700 | AT1G02310.1 | 51.872 | 187 | 83 | 3 | 9 | 193 | 30 | 211 | 4.11e-64 | 205 |
| Msa0090700 | AT1G02310.2 | 51.872 | 187 | 83 | 3 | 9 | 193 | 50 | 231 | 6.47e-64 | 206 |
| Msa0090700 | AT3G30540.1 | 41.935 | 186 | 71 | 1 | 9 | 194 | 30 | 178 | 9.28e-49 | 163 |
Find 66 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGGATTCAACACTTAT+TGG | 0.246669 | 1_2:-72763095 | Msa0090700:CDS |
| AGAAATTGAGTCATGAATTA+AGG | 0.308061 | 1_2:-72761467 | Msa0090700:CDS |
| GTTGGCCATTCACTACAAAT+TGG | 0.308540 | 1_2:+72763127 | None:intergenic |
| CTCCTCTGGTGATACGTTAC+AGG | 0.324607 | 1_2:-72762515 | Msa0090700:intron |
| TATTATCATTGGTTAACAAT+TGG | 0.335350 | 1_2:-72762858 | Msa0090700:CDS |
| CAAGGCTTGTGCTCTGTCTT+GGG | 0.338346 | 1_2:+72761559 | None:intergenic |
| GCAAGGCTTGTGCTCTGTCT+TGG | 0.340145 | 1_2:+72761558 | None:intergenic |
| ACTCACAAATATCACTTATA+AGG | 0.349810 | 1_2:-72762593 | Msa0090700:CDS |
| ATTCAACACTTATTGGTTGA+TGG | 0.357211 | 1_2:-72763088 | Msa0090700:CDS |
| ATTATCATTGGTTAACAATT+GGG | 0.370572 | 1_2:-72762857 | Msa0090700:CDS |
| GTATGACAGTTTGTAGGACT+TGG | 0.375713 | 1_2:-72762999 | Msa0090700:CDS |
| GGCCAACCTTTCTATGTCAA+TGG | 0.396915 | 1_2:-72763111 | Msa0090700:CDS |
| AATCAGACTCATATTATCAT+TGG | 0.419663 | 1_2:-72762869 | Msa0090700:CDS |
| GTCAAGTGGGGCAATGCTGC+TGG | 0.420167 | 1_2:-72762808 | Msa0090700:CDS |
| TTGAATCCATTGACATAGAA+AGG | 0.430244 | 1_2:+72763105 | None:intergenic |
| TCTCCCCATGAATGGCTGAT+TGG | 0.433378 | 1_2:+72761487 | None:intergenic |
| CAGTTGGTATGACAGTTTGT+AGG | 0.445206 | 1_2:-72763005 | Msa0090700:CDS |
| TTATGATGAAGTAGTATTCA+AGG | 0.449801 | 1_2:-72762929 | Msa0090700:CDS |
| GCTTTCCAATCAGCCATTCA+TGG | 0.450028 | 1_2:-72761492 | Msa0090700:CDS |
| GGAAACCAATTTGTAGTGAA+TGG | 0.455801 | 1_2:-72763132 | Msa0090700:CDS |
| GTTAACAATTGGGAGGCATA+TGG | 0.457775 | 1_2:-72762847 | Msa0090700:CDS |
| TGAATGGCTGATTGGAAAGC+TGG | 0.481040 | 1_2:+72761495 | None:intergenic |
| CTTTCCAATCAGCCATTCAT+GGG | 0.482851 | 1_2:-72761491 | Msa0090700:CDS |
| AGGACTTGGGCCTTCAATGA+TGG | 0.488912 | 1_2:-72762985 | Msa0090700:CDS |
| CGATGCACCTCTGACTCCTC+TGG | 0.493066 | 1_2:-72762529 | Msa0090700:CDS |
| ACTCAATTTCTCCCCATGAA+TGG | 0.495559 | 1_2:+72761479 | None:intergenic |
| TTTCACTCACCACAAAATCC+AGG | 0.498414 | 1_2:+72762905 | None:intergenic |
| GTGAAATGGAGGAAGATGAA+TGG | 0.499830 | 1_2:-72763173 | None:intergenic |
| TCTCCATTGACCATCATTGA+AGG | 0.500587 | 1_2:+72762975 | None:intergenic |
| TATGACAGTTTGTAGGACTT+GGG | 0.504511 | 1_2:-72762998 | Msa0090700:CDS |
| TGGCAGATGGTGCAAAAGAA+AGG | 0.506336 | 1_2:-72763153 | Msa0090700:CDS |
| TGAAGTAGTATTCAAGGCCC+TGG | 0.508682 | 1_2:-72762923 | Msa0090700:CDS |
| ATCCATTGACATAGAAAGGT+TGG | 0.514039 | 1_2:+72763109 | None:intergenic |
| TTGTAGTAGCCTCTGAGAGT+TGG | 0.519117 | 1_2:+72762748 | None:intergenic |
| ACCTCACAAGAGAGATTGCA+TGG | 0.528917 | 1_2:-72761440 | Msa0090700:CDS |
| GCAAAGCACAGTATGTCAAG+TGG | 0.532392 | 1_2:-72762822 | Msa0090700:CDS |
| GGGCCTTCAATGATGGTCAA+TGG | 0.538506 | 1_2:-72762978 | Msa0090700:CDS |
| CATCATCAGAGGTCAAGTTA+AGG | 0.540046 | 1_2:+72762785 | None:intergenic |
| CGGATGAGTCGACAAGAGGA+AGG | 0.554210 | 1_2:-72763056 | Msa0090700:CDS |
| AAAGTGATGGTGATTTCTGA+AGG | 0.556976 | 1_2:+72762950 | None:intergenic |
| CAAAGCACAGTATGTCAAGT+GGG | 0.561874 | 1_2:-72762821 | Msa0090700:CDS |
| TTCAAACATGCATCCTCAGT+TGG | 0.569301 | 1_2:-72763021 | Msa0090700:CDS |
| AAAATTGATATGCAATGGCA+AGG | 0.577934 | 1_2:+72761541 | None:intergenic |
| ATCATTGGTTAACAATTGGG+AGG | 0.578607 | 1_2:-72762854 | Msa0090700:CDS |
| AACTCTCAGAGGCTACTACA+AGG | 0.578621 | 1_2:-72762746 | Msa0090700:CDS |
| GACAAGAGGAAGGGTCACTC+AGG | 0.585832 | 1_2:-72763046 | Msa0090700:CDS |
| CGTATCACCAGAGGAGTCAG+AGG | 0.597961 | 1_2:+72762522 | None:intergenic |
| TTCACTCACCACAAAATCCA+GGG | 0.604887 | 1_2:+72762906 | None:intergenic |
| TTCTCACATCCAACTCTCAG+AGG | 0.605503 | 1_2:-72762757 | Msa0090700:CDS |
| ACTACTTCATCATAAAGTGA+TGG | 0.615191 | 1_2:+72762937 | None:intergenic |
| AACAATTGGGAGGCATATGG+TGG | 0.626650 | 1_2:-72762844 | Msa0090700:CDS |
| CCCATGCAATCTCTCTTGTG+AGG | 0.635677 | 1_2:+72761439 | None:intergenic |
| TTGGTTGATGGTATTTGCTG+CGG | 0.640214 | 1_2:-72763076 | Msa0090700:CDS |
| GCTGCGGATGAGTCGACAAG+AGG | 0.648322 | 1_2:-72763060 | Msa0090700:CDS |
| AAGTGATGGTGATTTCTGAA+GGG | 0.650216 | 1_2:+72762951 | None:intergenic |
| GTAATAAAATTGATATGCAA+TGG | 0.655248 | 1_2:+72761536 | None:intergenic |
| TCAAGGAACTTACCTTGACA+TGG | 0.657148 | 1_2:+72762722 | None:intergenic |
| TTTCCAATCAGCCATTCATG+GGG | 0.658572 | 1_2:-72761490 | Msa0090700:CDS |
| CTACTACAAGGACCATGTCA+AGG | 0.659291 | 1_2:-72762734 | Msa0090700:intron |
| GGATGAGTCGACAAGAGGAA+GGG | 0.663089 | 1_2:-72763055 | Msa0090700:CDS |
| ACAAACTGTCATACCAACTG+AGG | 0.663360 | 1_2:+72763008 | None:intergenic |
| GGAGGAAGATGAATGGCAGA+TGG | 0.665469 | 1_2:-72763166 | Msa0090700:CDS |
| CCTCACAAGAGAGATTGCAT+GGG | 0.673750 | 1_2:-72761439 | Msa0090700:CDS |
| AAAGCACAGTATGTCAAGTG+GGG | 0.694927 | 1_2:-72762820 | Msa0090700:CDS |
| TACCTGTAACGTATCACCAG+AGG | 0.699288 | 1_2:+72762513 | None:intergenic |
| GAGGAGTCAGAGGTGCATCG+AGG | 0.724283 | 1_2:+72762532 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | + | chr1_2:72761923-72761942 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | - | chr1_2:72761923-72761942 | Msa0090700:intron | 15.0% |
| !!! | AAATTGTAATGTTTTTTTGA+TGG | + | chr1_2:72762674-72762693 | None:intergenic | 15.0% |
| !!! | ATTACAATTTTTGATTATCT+AGG | - | chr1_2:72762684-72762703 | Msa0090700:intron | 15.0% |
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | + | chr1_2:72761923-72761942 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | - | chr1_2:72761923-72761942 | Msa0090700:intron | 15.0% |
| !!! | AAATTGTAATGTTTTTTTGA+TGG | + | chr1_2:72762674-72762693 | None:intergenic | 15.0% |
| !!! | ATTACAATTTTTGATTATCT+AGG | - | chr1_2:72762684-72762703 | Msa0090700:intron | 15.0% |
| !!! | TATTATCATTGGTTAACAAT+TGG | - | chr1_2:72761738-72761757 | Msa0090700:intron | 20.0% |
| !!! | ATTATCATTGGTTAACAATT+GGG | - | chr1_2:72761739-72761758 | Msa0090700:intron | 20.0% |
| !! | CTAAAGACATACTAAATAAT+TGG | + | chr1_2:72762262-72762281 | None:intergenic | 20.0% |
| !!! | GTTAATTATTTGTTACGATA+TGG | - | chr1_2:72762344-72762363 | Msa0090700:intron | 20.0% |
| !!! | ATATAGTCACAATTTTACAT+AGG | + | chr1_2:72762444-72762463 | None:intergenic | 20.0% |
| !!! | ATTCCATTAATTTTGTTGTA+AGG | - | chr1_2:72762573-72762592 | Msa0090700:CDS | 20.0% |
| !!! | CATTGATTTCAATATAAAGT+TGG | + | chr1_2:72762778-72762797 | None:intergenic | 20.0% |
| !! | CAACTTTATATTGAAATCAA+TGG | - | chr1_2:72762776-72762795 | Msa0090700:CDS | 20.0% |
| !!! | ATATTTTTCTTGTATTAGTG+TGG | - | chr1_2:72763008-72763027 | Msa0090700:CDS | 20.0% |
| !! | GTAATAAAATTGATATGCAA+TGG | + | chr1_2:72763063-72763082 | None:intergenic | 20.0% |
| !!! | TATTATCATTGGTTAACAAT+TGG | - | chr1_2:72761738-72761757 | Msa0090700:intron | 20.0% |
| !!! | ATTATCATTGGTTAACAATT+GGG | - | chr1_2:72761739-72761758 | Msa0090700:intron | 20.0% |
| !! | CTAAAGACATACTAAATAAT+TGG | + | chr1_2:72762262-72762281 | None:intergenic | 20.0% |
| !!! | GTTAATTATTTGTTACGATA+TGG | - | chr1_2:72762344-72762363 | Msa0090700:intron | 20.0% |
| !!! | ATATAGTCACAATTTTACAT+AGG | + | chr1_2:72762444-72762463 | None:intergenic | 20.0% |
| !!! | ATTCCATTAATTTTGTTGTA+AGG | - | chr1_2:72762573-72762592 | Msa0090700:CDS | 20.0% |
| !!! | CATTGATTTCAATATAAAGT+TGG | + | chr1_2:72762778-72762797 | None:intergenic | 20.0% |
| !! | CAACTTTATATTGAAATCAA+TGG | - | chr1_2:72762776-72762795 | Msa0090700:CDS | 20.0% |
| !!! | ATATTTTTCTTGTATTAGTG+TGG | - | chr1_2:72763008-72763027 | Msa0090700:CDS | 20.0% |
| !! | GTAATAAAATTGATATGCAA+TGG | + | chr1_2:72763063-72763082 | None:intergenic | 20.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | - | chr1_2:72761667-72761686 | Msa0090700:intron | 25.0% |
| ! | AATCAGACTCATATTATCAT+TGG | - | chr1_2:72761727-72761746 | Msa0090700:intron | 25.0% |
| !! | AACAGGAAGAATTAAGTTTT+AGG | + | chr1_2:72761906-72761925 | None:intergenic | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | + | chr1_2:72761951-72761970 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | - | chr1_2:72762003-72762022 | Msa0090700:intron | 25.0% |
| !! | AGTTCAAAGATAATTTGTGT+TGG | - | chr1_2:72762132-72762151 | Msa0090700:intron | 25.0% |
| ! | AAGACATACTAAATAATTGG+AGG | + | chr1_2:72762259-72762278 | None:intergenic | 25.0% |
| ! | TGGTCAGTTATGTTAAAAAA+TGG | - | chr1_2:72762289-72762308 | Msa0090700:intron | 25.0% |
| !!! | GAATTTTGGAAAAAAAAGTG+TGG | - | chr1_2:72762322-72762341 | Msa0090700:intron | 25.0% |
| ! | GACTATATGCTTCAATTATT+TGG | - | chr1_2:72762456-72762475 | Msa0090700:intron | 25.0% |
| !!! | ACATAACAAATAGTCACTTT+TGG | + | chr1_2:72762540-72762559 | None:intergenic | 25.0% |
| ! | CAACCTTACAACAAAATTAA+TGG | + | chr1_2:72762579-72762598 | None:intergenic | 25.0% |
| !!! | AAGGTTGATAAACTTATAGA+AGG | - | chr1_2:72762592-72762611 | Msa0090700:CDS | 25.0% |
| ! | TCAATATAAAGTTGGATAGA+TGG | + | chr1_2:72762770-72762789 | None:intergenic | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr1_2:72762985-72763004 | Msa0090700:CDS | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | chr1_2:72763129-72763148 | Msa0090700:CDS | 25.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | - | chr1_2:72761667-72761686 | Msa0090700:intron | 25.0% |
| ! | AATCAGACTCATATTATCAT+TGG | - | chr1_2:72761727-72761746 | Msa0090700:intron | 25.0% |
| !! | AACAGGAAGAATTAAGTTTT+AGG | + | chr1_2:72761906-72761925 | None:intergenic | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | + | chr1_2:72761951-72761970 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | - | chr1_2:72762003-72762022 | Msa0090700:intron | 25.0% |
| !! | AGTTCAAAGATAATTTGTGT+TGG | - | chr1_2:72762132-72762151 | Msa0090700:intron | 25.0% |
| ! | AAGACATACTAAATAATTGG+AGG | + | chr1_2:72762259-72762278 | None:intergenic | 25.0% |
| ! | TGGTCAGTTATGTTAAAAAA+TGG | - | chr1_2:72762289-72762308 | Msa0090700:intron | 25.0% |
| !!! | GAATTTTGGAAAAAAAAGTG+TGG | - | chr1_2:72762322-72762341 | Msa0090700:intron | 25.0% |
| ! | GACTATATGCTTCAATTATT+TGG | - | chr1_2:72762456-72762475 | Msa0090700:intron | 25.0% |
| !!! | ACATAACAAATAGTCACTTT+TGG | + | chr1_2:72762540-72762559 | None:intergenic | 25.0% |
| ! | CAACCTTACAACAAAATTAA+TGG | + | chr1_2:72762579-72762598 | None:intergenic | 25.0% |
| !!! | AAGGTTGATAAACTTATAGA+AGG | - | chr1_2:72762592-72762611 | Msa0090700:CDS | 25.0% |
| ! | TCAATATAAAGTTGGATAGA+TGG | + | chr1_2:72762770-72762789 | None:intergenic | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr1_2:72762985-72763004 | Msa0090700:CDS | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | chr1_2:72763129-72763148 | Msa0090700:CDS | 25.0% |
| TTGAATCCATTGACATAGAA+AGG | + | chr1_2:72761494-72761513 | None:intergenic | 30.0% | |
| ! | TCAATGGATTCAACACTTAT+TGG | - | chr1_2:72761501-72761520 | Msa0090700:CDS | 30.0% |
| ! | ATTCAACACTTATTGGTTGA+TGG | - | chr1_2:72761508-72761527 | Msa0090700:CDS | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | + | chr1_2:72761662-72761681 | None:intergenic | 30.0% | |
| !!! | TAAGTTTTAGGTACATCTCA+AGG | + | chr1_2:72761894-72761913 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | - | chr1_2:72762026-72762045 | Msa0090700:intron | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | - | chr1_2:72762027-72762046 | Msa0090700:intron | 30.0% |
| ACTGAGAAAATAACAATGAG+AGG | + | chr1_2:72762219-72762238 | None:intergenic | 30.0% | |
| AGTATGTCTTTAGTGATTTG+TGG | - | chr1_2:72762269-72762288 | Msa0090700:intron | 30.0% | |
| TGTTAAAAAATGGCTAAGTG+TGG | - | chr1_2:72762299-72762318 | Msa0090700:intron | 30.0% | |
| GTTAAAAAATGGCTAAGTGT+GGG | - | chr1_2:72762300-72762319 | Msa0090700:intron | 30.0% | |
| TGGGGAATAGTTAAAAAAGA+TGG | - | chr1_2:72762413-72762432 | Msa0090700:intron | 30.0% | |
| GCTTCAATTATTTGGTTACT+TGG | - | chr1_2:72762464-72762483 | Msa0090700:intron | 30.0% | |
| !! | TTGTGCTTGTTGTTTATTAC+AGG | - | chr1_2:72762733-72762752 | Msa0090700:intron | 30.0% |
| AAACTCAAAGCATGTACTTT+CGG | + | chr1_2:72762820-72762839 | None:intergenic | 30.0% | |
| ACATCATACATTTCAATTGC+TGG | + | chr1_2:72762858-72762877 | None:intergenic | 30.0% | |
| ! | TCTAGAATTTATCATCTGCT+TGG | - | chr1_2:72762884-72762903 | Msa0090700:CDS | 30.0% |
| !! | TTGGCTTTAATAAGATGCTT+TGG | - | chr1_2:72762903-72762922 | Msa0090700:CDS | 30.0% |
| AAAATTGATATGCAATGGCA+AGG | + | chr1_2:72763058-72763077 | None:intergenic | 30.0% | |
| TTGAATCCATTGACATAGAA+AGG | + | chr1_2:72761494-72761513 | None:intergenic | 30.0% | |
| ! | TCAATGGATTCAACACTTAT+TGG | - | chr1_2:72761501-72761520 | Msa0090700:CDS | 30.0% |
| ! | ATTCAACACTTATTGGTTGA+TGG | - | chr1_2:72761508-72761527 | Msa0090700:CDS | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | + | chr1_2:72761662-72761681 | None:intergenic | 30.0% | |
| !!! | TAAGTTTTAGGTACATCTCA+AGG | + | chr1_2:72761894-72761913 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | - | chr1_2:72762026-72762045 | Msa0090700:intron | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | - | chr1_2:72762027-72762046 | Msa0090700:intron | 30.0% |
| ACTGAGAAAATAACAATGAG+AGG | + | chr1_2:72762219-72762238 | None:intergenic | 30.0% | |
| AGTATGTCTTTAGTGATTTG+TGG | - | chr1_2:72762269-72762288 | Msa0090700:intron | 30.0% | |
| TGTTAAAAAATGGCTAAGTG+TGG | - | chr1_2:72762299-72762318 | Msa0090700:intron | 30.0% | |
| GTTAAAAAATGGCTAAGTGT+GGG | - | chr1_2:72762300-72762319 | Msa0090700:intron | 30.0% | |
| TGGGGAATAGTTAAAAAAGA+TGG | - | chr1_2:72762413-72762432 | Msa0090700:intron | 30.0% | |
| GCTTCAATTATTTGGTTACT+TGG | - | chr1_2:72762464-72762483 | Msa0090700:intron | 30.0% | |
| !! | TTGTGCTTGTTGTTTATTAC+AGG | - | chr1_2:72762733-72762752 | Msa0090700:intron | 30.0% |
| AAACTCAAAGCATGTACTTT+CGG | + | chr1_2:72762820-72762839 | None:intergenic | 30.0% | |
| ACATCATACATTTCAATTGC+TGG | + | chr1_2:72762858-72762877 | None:intergenic | 30.0% | |
| ! | TCTAGAATTTATCATCTGCT+TGG | - | chr1_2:72762884-72762903 | Msa0090700:CDS | 30.0% |
| !! | TTGGCTTTAATAAGATGCTT+TGG | - | chr1_2:72762903-72762922 | Msa0090700:CDS | 30.0% |
| AAAATTGATATGCAATGGCA+AGG | + | chr1_2:72763058-72763077 | None:intergenic | 30.0% | |
| GGAAACCAATTTGTAGTGAA+TGG | - | chr1_2:72761464-72761483 | Msa0090700:CDS | 35.0% | |
| ATCCATTGACATAGAAAGGT+TGG | + | chr1_2:72761490-72761509 | None:intergenic | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | - | chr1_2:72761598-72761617 | Msa0090700:intron | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | + | chr1_2:72761648-72761667 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | + | chr1_2:72761649-72761668 | None:intergenic | 35.0% |
| ! | ATCATTGGTTAACAATTGGG+AGG | - | chr1_2:72761742-72761761 | Msa0090700:intron | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | + | chr1_2:72761825-72761844 | None:intergenic | 35.0% | |
| TCGAGCAAGCATATAATTGA+TGG | - | chr1_2:72762393-72762412 | Msa0090700:intron | 35.0% | |
| CGAGCAAGCATATAATTGAT+GGG | - | chr1_2:72762394-72762413 | Msa0090700:intron | 35.0% | |
| GAGCAAGCATATAATTGATG+GGG | - | chr1_2:72762395-72762414 | Msa0090700:intron | 35.0% | |
| GCACAAACTACATATGAGAA+GGG | + | chr1_2:72762719-72762738 | None:intergenic | 35.0% | |
| AGCACAAACTACATATGAGA+AGG | + | chr1_2:72762720-72762739 | None:intergenic | 35.0% | |
| ! | GTACATGCTTTGAGTTTCTA+TGG | - | chr1_2:72762823-72762842 | Msa0090700:CDS | 35.0% |
| TCATACATTTCAATTGCTGG+TGG | + | chr1_2:72762855-72762874 | None:intergenic | 35.0% | |
| GGAAACCAATTTGTAGTGAA+TGG | - | chr1_2:72761464-72761483 | Msa0090700:CDS | 35.0% | |
| ATCCATTGACATAGAAAGGT+TGG | + | chr1_2:72761490-72761509 | None:intergenic | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | - | chr1_2:72761598-72761617 | Msa0090700:intron | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | + | chr1_2:72761648-72761667 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | + | chr1_2:72761649-72761668 | None:intergenic | 35.0% |
| ! | ATCATTGGTTAACAATTGGG+AGG | - | chr1_2:72761742-72761761 | Msa0090700:intron | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | + | chr1_2:72761825-72761844 | None:intergenic | 35.0% | |
| TCGAGCAAGCATATAATTGA+TGG | - | chr1_2:72762393-72762412 | Msa0090700:intron | 35.0% | |
| CGAGCAAGCATATAATTGAT+GGG | - | chr1_2:72762394-72762413 | Msa0090700:intron | 35.0% | |
| GAGCAAGCATATAATTGATG+GGG | - | chr1_2:72762395-72762414 | Msa0090700:intron | 35.0% | |
| GCACAAACTACATATGAGAA+GGG | + | chr1_2:72762719-72762738 | None:intergenic | 35.0% | |
| AGCACAAACTACATATGAGA+AGG | + | chr1_2:72762720-72762739 | None:intergenic | 35.0% | |
| ! | GTACATGCTTTGAGTTTCTA+TGG | - | chr1_2:72762823-72762842 | Msa0090700:CDS | 35.0% |
| TCATACATTTCAATTGCTGG+TGG | + | chr1_2:72762855-72762874 | None:intergenic | 35.0% | |
| GTTGGCCATTCACTACAAAT+TGG | + | chr1_2:72761472-72761491 | None:intergenic | 40.0% | |
| !! | TTGGTTGATGGTATTTGCTG+CGG | - | chr1_2:72761520-72761539 | Msa0090700:CDS | 40.0% |
| TTCAAACATGCATCCTCAGT+TGG | - | chr1_2:72761575-72761594 | Msa0090700:intron | 40.0% | |
| ACAAACTGTCATACCAACTG+AGG | + | chr1_2:72761591-72761610 | None:intergenic | 40.0% | |
| ! | CAGTTGGTATGACAGTTTGT+AGG | - | chr1_2:72761591-72761610 | Msa0090700:intron | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | - | chr1_2:72761597-72761616 | Msa0090700:intron | 40.0% | |
| TCTCCATTGACCATCATTGA+AGG | + | chr1_2:72761624-72761643 | None:intergenic | 40.0% | |
| TTCACTCACCACAAAATCCA+GGG | + | chr1_2:72761693-72761712 | None:intergenic | 40.0% | |
| TTTCACTCACCACAAAATCC+AGG | + | chr1_2:72761694-72761713 | None:intergenic | 40.0% | |
| ! | GTTAACAATTGGGAGGCATA+TGG | - | chr1_2:72761749-72761768 | Msa0090700:intron | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | - | chr1_2:72761775-72761794 | Msa0090700:intron | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | - | chr1_2:72761776-72761795 | Msa0090700:intron | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | + | chr1_2:72761814-72761833 | None:intergenic | 40.0% | |
| TCAAGGAACTTACCTTGACA+TGG | + | chr1_2:72761877-72761896 | None:intergenic | 40.0% | |
| AGCTCCCAAGCAAAAATTGT+TGG | + | chr1_2:72762034-72762053 | None:intergenic | 40.0% | |
| ! | ATGGCTAAGTGTGGGAATTT+TGG | - | chr1_2:72762308-72762327 | Msa0090700:intron | 40.0% |
| CTTTCCAATCAGCCATTCAT+GGG | - | chr1_2:72763105-72763124 | Msa0090700:CDS | 40.0% | |
| TTTCCAATCAGCCATTCATG+GGG | - | chr1_2:72763106-72763125 | Msa0090700:CDS | 40.0% | |
| ACTCAATTTCTCCCCATGAA+TGG | + | chr1_2:72763120-72763139 | None:intergenic | 40.0% | |
| ! | GAGAGATTGCATGGGTTTTT+CGG | - | chr1_2:72763165-72763184 | Msa0090700:CDS | 40.0% |
| GTTGGCCATTCACTACAAAT+TGG | + | chr1_2:72761472-72761491 | None:intergenic | 40.0% | |
| !! | TTGGTTGATGGTATTTGCTG+CGG | - | chr1_2:72761520-72761539 | Msa0090700:CDS | 40.0% |
| TTCAAACATGCATCCTCAGT+TGG | - | chr1_2:72761575-72761594 | Msa0090700:intron | 40.0% | |
| ACAAACTGTCATACCAACTG+AGG | + | chr1_2:72761591-72761610 | None:intergenic | 40.0% | |
| ! | CAGTTGGTATGACAGTTTGT+AGG | - | chr1_2:72761591-72761610 | Msa0090700:intron | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | - | chr1_2:72761597-72761616 | Msa0090700:intron | 40.0% | |
| TCTCCATTGACCATCATTGA+AGG | + | chr1_2:72761624-72761643 | None:intergenic | 40.0% | |
| TTCACTCACCACAAAATCCA+GGG | + | chr1_2:72761693-72761712 | None:intergenic | 40.0% | |
| TTTCACTCACCACAAAATCC+AGG | + | chr1_2:72761694-72761713 | None:intergenic | 40.0% | |
| ! | GTTAACAATTGGGAGGCATA+TGG | - | chr1_2:72761749-72761768 | Msa0090700:intron | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | - | chr1_2:72761775-72761794 | Msa0090700:intron | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | - | chr1_2:72761776-72761795 | Msa0090700:intron | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | + | chr1_2:72761814-72761833 | None:intergenic | 40.0% | |
| TCAAGGAACTTACCTTGACA+TGG | + | chr1_2:72761877-72761896 | None:intergenic | 40.0% | |
| AGCTCCCAAGCAAAAATTGT+TGG | + | chr1_2:72762034-72762053 | None:intergenic | 40.0% | |
| ! | ATGGCTAAGTGTGGGAATTT+TGG | - | chr1_2:72762308-72762327 | Msa0090700:intron | 40.0% |
| CTTTCCAATCAGCCATTCAT+GGG | - | chr1_2:72763105-72763124 | Msa0090700:CDS | 40.0% | |
| TTTCCAATCAGCCATTCATG+GGG | - | chr1_2:72763106-72763125 | Msa0090700:CDS | 40.0% | |
| ACTCAATTTCTCCCCATGAA+TGG | + | chr1_2:72763120-72763139 | None:intergenic | 40.0% | |
| ! | GAGAGATTGCATGGGTTTTT+CGG | - | chr1_2:72763165-72763184 | Msa0090700:CDS | 40.0% |
| TGGCAGATGGTGCAAAAGAA+AGG | - | chr1_2:72761443-72761462 | Msa0090700:CDS | 45.0% | |
| GGCCAACCTTTCTATGTCAA+TGG | - | chr1_2:72761485-72761504 | Msa0090700:CDS | 45.0% | |
| TGAAGTAGTATTCAAGGCCC+TGG | - | chr1_2:72761673-72761692 | Msa0090700:intron | 45.0% | |
| ! | ATTCAAGGCCCTGGATTTTG+TGG | - | chr1_2:72761682-72761701 | Msa0090700:intron | 45.0% |
| ! | AACAATTGGGAGGCATATGG+TGG | - | chr1_2:72761752-72761771 | Msa0090700:intron | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | - | chr1_2:72761774-72761793 | Msa0090700:intron | 45.0% | |
| TTCTCACATCCAACTCTCAG+AGG | - | chr1_2:72761839-72761858 | Msa0090700:intron | 45.0% | |
| ! | TTGTAGTAGCCTCTGAGAGT+TGG | + | chr1_2:72761851-72761870 | None:intergenic | 45.0% |
| AACTCTCAGAGGCTACTACA+AGG | - | chr1_2:72761850-72761869 | Msa0090700:intron | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | - | chr1_2:72761862-72761881 | Msa0090700:intron | 45.0% | |
| TACCTGTAACGTATCACCAG+AGG | + | chr1_2:72762086-72762105 | None:intergenic | 45.0% | |
| TGAATGGCTGATTGGAAAGC+TGG | + | chr1_2:72763104-72763123 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCCATTCA+TGG | - | chr1_2:72763104-72763123 | Msa0090700:CDS | 45.0% | |
| ACCTCACAAGAGAGATTGCA+TGG | - | chr1_2:72763156-72763175 | Msa0090700:CDS | 45.0% | |
| CCTCACAAGAGAGATTGCAT+GGG | - | chr1_2:72763157-72763176 | Msa0090700:CDS | 45.0% | |
| TGGCAGATGGTGCAAAAGAA+AGG | - | chr1_2:72761443-72761462 | Msa0090700:CDS | 45.0% | |
| GGCCAACCTTTCTATGTCAA+TGG | - | chr1_2:72761485-72761504 | Msa0090700:CDS | 45.0% | |
| TGAAGTAGTATTCAAGGCCC+TGG | - | chr1_2:72761673-72761692 | Msa0090700:intron | 45.0% | |
| ! | ATTCAAGGCCCTGGATTTTG+TGG | - | chr1_2:72761682-72761701 | Msa0090700:intron | 45.0% |
| ! | AACAATTGGGAGGCATATGG+TGG | - | chr1_2:72761752-72761771 | Msa0090700:intron | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | - | chr1_2:72761774-72761793 | Msa0090700:intron | 45.0% | |
| TTCTCACATCCAACTCTCAG+AGG | - | chr1_2:72761839-72761858 | Msa0090700:intron | 45.0% | |
| ! | TTGTAGTAGCCTCTGAGAGT+TGG | + | chr1_2:72761851-72761870 | None:intergenic | 45.0% |
| AACTCTCAGAGGCTACTACA+AGG | - | chr1_2:72761850-72761869 | Msa0090700:intron | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | - | chr1_2:72761862-72761881 | Msa0090700:intron | 45.0% | |
| TACCTGTAACGTATCACCAG+AGG | + | chr1_2:72762086-72762105 | None:intergenic | 45.0% | |
| TGAATGGCTGATTGGAAAGC+TGG | + | chr1_2:72763104-72763123 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCCATTCA+TGG | - | chr1_2:72763104-72763123 | Msa0090700:CDS | 45.0% | |
| ACCTCACAAGAGAGATTGCA+TGG | - | chr1_2:72763156-72763175 | Msa0090700:CDS | 45.0% | |
| CCTCACAAGAGAGATTGCAT+GGG | - | chr1_2:72763157-72763176 | Msa0090700:CDS | 45.0% | |
| GGAGGAAGATGAATGGCAGA+TGG | - | chr1_2:72761430-72761449 | Msa0090700:CDS | 50.0% | |
| GGATGAGTCGACAAGAGGAA+GGG | - | chr1_2:72761541-72761560 | Msa0090700:CDS | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | - | chr1_2:72761611-72761630 | Msa0090700:intron | 50.0% | |
| GGGCCTTCAATGATGGTCAA+TGG | - | chr1_2:72761618-72761637 | Msa0090700:intron | 50.0% | |
| CTCCTCTGGTGATACGTTAC+AGG | - | chr1_2:72762081-72762100 | Msa0090700:intron | 50.0% | |
| CAAGGCTTGTGCTCTGTCTT+GGG | + | chr1_2:72763040-72763059 | None:intergenic | 50.0% | |
| TCTCCCCATGAATGGCTGAT+TGG | + | chr1_2:72763112-72763131 | None:intergenic | 50.0% | |
| CCCATGCAATCTCTCTTGTG+AGG | + | chr1_2:72763160-72763179 | None:intergenic | 50.0% | |
| GGAGGAAGATGAATGGCAGA+TGG | - | chr1_2:72761430-72761449 | Msa0090700:CDS | 50.0% | |
| GGATGAGTCGACAAGAGGAA+GGG | - | chr1_2:72761541-72761560 | Msa0090700:CDS | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | - | chr1_2:72761611-72761630 | Msa0090700:intron | 50.0% | |
| GGGCCTTCAATGATGGTCAA+TGG | - | chr1_2:72761618-72761637 | Msa0090700:intron | 50.0% | |
| CTCCTCTGGTGATACGTTAC+AGG | - | chr1_2:72762081-72762100 | Msa0090700:intron | 50.0% | |
| CAAGGCTTGTGCTCTGTCTT+GGG | + | chr1_2:72763040-72763059 | None:intergenic | 50.0% | |
| TCTCCCCATGAATGGCTGAT+TGG | + | chr1_2:72763112-72763131 | None:intergenic | 50.0% | |
| CCCATGCAATCTCTCTTGTG+AGG | + | chr1_2:72763160-72763179 | None:intergenic | 50.0% | |
| CGGATGAGTCGACAAGAGGA+AGG | - | chr1_2:72761540-72761559 | Msa0090700:CDS | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | - | chr1_2:72761550-72761569 | Msa0090700:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | + | chr1_2:72762077-72762096 | None:intergenic | 55.0% | |
| GCAAGGCTTGTGCTCTGTCT+TGG | + | chr1_2:72763041-72763060 | None:intergenic | 55.0% | |
| CGGATGAGTCGACAAGAGGA+AGG | - | chr1_2:72761540-72761559 | Msa0090700:CDS | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | - | chr1_2:72761550-72761569 | Msa0090700:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | + | chr1_2:72762077-72762096 | None:intergenic | 55.0% | |
| GCAAGGCTTGTGCTCTGTCT+TGG | + | chr1_2:72763041-72763060 | None:intergenic | 55.0% | |
| GCTGCGGATGAGTCGACAAG+AGG | - | chr1_2:72761536-72761555 | Msa0090700:CDS | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | - | chr1_2:72761788-72761807 | Msa0090700:intron | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | + | chr1_2:72762067-72762086 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | - | chr1_2:72762067-72762086 | Msa0090700:intron | 60.0% | |
| GCTGCGGATGAGTCGACAAG+AGG | - | chr1_2:72761536-72761555 | Msa0090700:CDS | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | - | chr1_2:72761788-72761807 | Msa0090700:intron | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | + | chr1_2:72762067-72762086 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | - | chr1_2:72762067-72762086 | Msa0090700:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 72761428 | 72763190 | 72761428 | ID=Msa0090700;Name=Msa0090700 |
| chr1_2 | mRNA | 72761428 | 72763190 | 72761428 | ID=Msa0090700-mRNA-1;Parent=Msa0090700;Name=Msa0090700-mRNA-1;_AED=0.20;_eAED=0.31;_QI=0|0|0|1|1|1|3|0|247 |
| chr1_2 | exon | 72762735 | 72763190 | 72762735 | ID=Msa0090700-mRNA-1:exon:25297;Parent=Msa0090700-mRNA-1 |
| chr1_2 | exon | 72762516 | 72762638 | 72762516 | ID=Msa0090700-mRNA-1:exon:25296;Parent=Msa0090700-mRNA-1 |
| chr1_2 | exon | 72761428 | 72761592 | 72761428 | ID=Msa0090700-mRNA-1:exon:25295;Parent=Msa0090700-mRNA-1 |
| chr1_2 | CDS | 72762735 | 72763190 | 72762735 | ID=Msa0090700-mRNA-1:cds;Parent=Msa0090700-mRNA-1 |
| chr1_2 | CDS | 72762516 | 72762638 | 72762516 | ID=Msa0090700-mRNA-1:cds;Parent=Msa0090700-mRNA-1 |
| chr1_2 | CDS | 72761428 | 72761592 | 72761428 | ID=Msa0090700-mRNA-1:cds;Parent=Msa0090700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
