Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248270 | XP_039685617.1 | 88.205 | 195 | 7 | 1 | 58 | 236 | 37 | 231 | 1.33e-116 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248270 | sp|Q9LZV3|MAN6_ARATH | 72.251 | 191 | 37 | 1 | 62 | 236 | 42 | 232 | 2.34e-98 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248270 | G7LAQ6 | 88.205 | 195 | 7 | 1 | 58 | 236 | 54 | 248 | 1.87e-116 | 350 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044420 | Msa1248270 | 0.824227 | 9.045808e-54 | -8.615850e-47 |
| Msa0090700 | Msa1248270 | 0.814321 | 1.635262e-51 | -8.615850e-47 |
| Msa0113040 | Msa1248270 | 0.808944 | 2.414791e-50 | -8.615850e-47 |
| Msa0183550 | Msa1248270 | 0.806451 | 8.172323e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248270 | MtrunA17_Chr8g0334501 | 84.466 | 206 | 14 | 2 | 49 | 236 | 42 | 247 | 9.40e-120 | 348 |
| Msa1248270 | MtrunA17_Chr7g0245051 | 77.835 | 194 | 27 | 1 | 59 | 236 | 51 | 244 | 7.73e-107 | 315 |
| Msa1248270 | MtrunA17_Chr7g0245101 | 74.227 | 194 | 34 | 1 | 59 | 236 | 52 | 245 | 5.57e-102 | 303 |
| Msa1248270 | MtrunA17_Chr7g0271511 | 54.054 | 185 | 69 | 1 | 68 | 236 | 63 | 247 | 7.88e-67 | 212 |
| Msa1248270 | MtrunA17_Chr1g0193611 | 51.892 | 185 | 73 | 1 | 68 | 236 | 33 | 217 | 8.35e-66 | 209 |
| Msa1248270 | MtrunA17_Chr5g0404601 | 53.763 | 186 | 69 | 2 | 68 | 236 | 32 | 217 | 6.76e-65 | 207 |
| Msa1248270 | MtrunA17_Chr1g0193531 | 52.432 | 185 | 71 | 2 | 68 | 236 | 30 | 213 | 9.26e-65 | 206 |
| Msa1248270 | MtrunA17_Chr1g0193551 | 52.432 | 185 | 71 | 2 | 68 | 236 | 36 | 219 | 1.08e-64 | 206 |
| Msa1248270 | MtrunA17_Chr4g0020521 | 50.543 | 184 | 75 | 1 | 68 | 235 | 35 | 218 | 1.11e-64 | 206 |
| Msa1248270 | MtrunA17_Chr3g0141751 | 44.651 | 215 | 95 | 3 | 38 | 236 | 5 | 211 | 1.23e-63 | 203 |
| Msa1248270 | MtrunA17_Chr4g0040121 | 49.223 | 193 | 81 | 2 | 61 | 236 | 33 | 225 | 2.05e-63 | 203 |
| Msa1248270 | MtrunA17_Chr1g0193601 | 51.892 | 185 | 73 | 1 | 68 | 236 | 33 | 217 | 2.31e-63 | 202 |
| Msa1248270 | MtrunA17_Chr1g0193541 | 52.542 | 177 | 66 | 2 | 68 | 226 | 32 | 208 | 3.99e-61 | 197 |
| Msa1248270 | MtrunA17_Chr2g0324441 | 46.535 | 202 | 90 | 3 | 53 | 236 | 25 | 226 | 3.66e-57 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248270 | AT5G01930.1 | 72.251 | 191 | 37 | 1 | 62 | 236 | 42 | 232 | 2.38e-99 | 296 |
| Msa1248270 | AT3G10900.1 | 49.189 | 185 | 77 | 1 | 68 | 235 | 30 | 214 | 1.49e-62 | 201 |
| Msa1248270 | AT3G10890.1 | 46.196 | 184 | 83 | 1 | 68 | 235 | 32 | 215 | 1.07e-58 | 191 |
| Msa1248270 | AT5G66460.1 | 45.946 | 185 | 84 | 1 | 68 | 236 | 32 | 216 | 1.61e-57 | 188 |
| Msa1248270 | AT4G28320.1 | 47.849 | 186 | 80 | 2 | 68 | 236 | 42 | 227 | 7.50e-57 | 187 |
| Msa1248270 | AT2G20680.1 | 47.396 | 192 | 84 | 2 | 62 | 236 | 37 | 228 | 2.38e-56 | 186 |
| Msa1248270 | AT1G02310.2 | 47.594 | 187 | 75 | 4 | 68 | 236 | 50 | 231 | 4.91e-53 | 177 |
| Msa1248270 | AT1G02310.1 | 47.594 | 187 | 75 | 4 | 68 | 236 | 30 | 211 | 5.80e-53 | 176 |
| Msa1248270 | AT3G30540.1 | 46.429 | 168 | 69 | 1 | 68 | 235 | 30 | 176 | 8.45e-52 | 171 |
Find 57 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTAGAATTTGTGTTTA+TGG | 0.055311 | 8_2:-41954181 | Msa1248270:CDS |
| TCAATGGATTCAACACTTAT+TGG | 0.246669 | 8_2:-41953849 | Msa1248270:CDS |
| GTTGGCCATTCACTACAAAT+TGG | 0.308540 | 8_2:+41953881 | None:intergenic |
| CTCCTCTGGTGATACGTTAC+AGG | 0.324607 | 8_2:-41953269 | None:intergenic |
| TATTGTCATTGGTTAACAAT+TGG | 0.332911 | 8_2:-41953612 | Msa1248270:CDS |
| ACTCACAAATATCACTTATA+AGG | 0.349810 | 8_2:-41953347 | Msa1248270:CDS |
| ATTCAACACTTATTGGTTGA+TGG | 0.357211 | 8_2:-41953842 | Msa1248270:CDS |
| ATTGTCATTGGTTAACAATT+GGG | 0.377716 | 8_2:-41953611 | Msa1248270:CDS |
| AATCATATTATTAGAGTCTC+AGG | 0.382803 | 8_2:-41954010 | Msa1248270:intron |
| CCCGCAATCTCTCTGTTCTT+CGG | 0.386315 | 8_2:-41954235 | Msa1248270:CDS |
| GGCCAACCTTTCTATGTCAA+TGG | 0.396915 | 8_2:-41953865 | Msa1248270:CDS |
| AATCAGACTCATATTGTCAT+TGG | 0.416557 | 8_2:-41953623 | Msa1248270:CDS |
| GTCAAGTGGGGCAATGCTGC+TGG | 0.420167 | 8_2:-41953562 | Msa1248270:CDS |
| TTGAATCCATTGACATAGAA+AGG | 0.430244 | 8_2:+41953859 | None:intergenic |
| CCGAAGAACAGAGAGATTGC+GGG | 0.441622 | 8_2:+41954235 | None:intergenic |
| GGAAACCAATTTGTAGTGAA+TGG | 0.455801 | 8_2:-41953886 | Msa1248270:CDS |
| GTTAACAATTGGGAGGCATA+TGG | 0.457775 | 8_2:-41953601 | Msa1248270:CDS |
| TTATGATGAAGTAGTATTCA+AGG | 0.468409 | 8_2:-41953683 | Msa1248270:CDS |
| CGATGCACCTCTGACTCCTC+TGG | 0.493066 | 8_2:-41953283 | Msa1248270:CDS |
| GTGAAATGGAGGAAGATGAA+TGG | 0.499830 | 8_2:-41953927 | Msa1248270:CDS |
| TGGCAGATGGTGCAAAAGAA+AGG | 0.506336 | 8_2:-41953907 | Msa1248270:CDS |
| ATCCATTGACATAGAAAGGT+TGG | 0.514039 | 8_2:+41953863 | None:intergenic |
| TTGTAGTAGCCTCTGAGAGT+TGG | 0.519117 | 8_2:+41953502 | None:intergenic |
| GCAAAGCACAGTATGTCAAG+TGG | 0.532392 | 8_2:-41953576 | Msa1248270:CDS |
| CATCATCAGAGGTCAAGTTA+AGG | 0.540046 | 8_2:+41953539 | None:intergenic |
| TTTCACTCACCACAAAATCC+AGG | 0.546224 | 8_2:+41953659 | None:intergenic |
| CGGATGAGTCGACAAGAGGA+AGG | 0.554210 | 8_2:-41953810 | Msa1248270:CDS |
| CAAAGCACAGTATGTCAAGT+GGG | 0.561874 | 8_2:-41953575 | Msa1248270:CDS |
| ACCGAAGAACAGAGAGATTG+CGG | 0.562576 | 8_2:+41954234 | None:intergenic |
| TTGTGAACCGACAGTGGCAG+TGG | 0.564919 | 8_2:+41954275 | None:intergenic |
| TTCAAACATGCATCCTCAGT+TGG | 0.569301 | 8_2:-41953775 | Msa1248270:CDS |
| GTGGCAGTGGGTGGAGATCA+CGG | 0.570836 | 8_2:+41954288 | None:intergenic |
| GTCATTGGTTAACAATTGGG+AGG | 0.576168 | 8_2:-41953608 | Msa1248270:CDS |
| TGGTTTAAGGAGTGAAATGG+AGG | 0.578038 | 8_2:-41953938 | Msa1248270:intron |
| AACTCTCAGAGGCTACTACA+AGG | 0.578621 | 8_2:-41953500 | Msa1248270:CDS |
| TGAAGTAGTATTCAAGGACC+TGG | 0.585528 | 8_2:-41953677 | Msa1248270:CDS |
| GACAAGAGGAAGGGTCACTC+AGG | 0.585832 | 8_2:-41953800 | Msa1248270:CDS |
| CGTATCACCAGAGGAGTCAG+AGG | 0.597961 | 8_2:+41953276 | None:intergenic |
| TCTCCACCCACTGCCACTGT+CGG | 0.598042 | 8_2:-41954282 | Msa1248270:CDS |
| TTCTCACATCCAACTCTCAG+AGG | 0.605503 | 8_2:-41953511 | Msa1248270:CDS |
| AATCTCTCTGTTCTTCGGTG+AGG | 0.614055 | 8_2:-41954230 | Msa1248270:CDS |
| ACTACTTCATCATAAAGTGA+TGG | 0.615191 | 8_2:+41953691 | None:intergenic |
| AACAATTGGGAGGCATATGG+TGG | 0.626650 | 8_2:-41953598 | Msa1248270:CDS |
| GGAGATCACGGAAAGAGACA+TGG | 0.631727 | 8_2:+41954300 | None:intergenic |
| TTGGTTGATGGTATTTGCTG+CGG | 0.640214 | 8_2:-41953830 | Msa1248270:CDS |
| GCTGCGGATGAGTCGACAAG+AGG | 0.648322 | 8_2:-41953814 | Msa1248270:CDS |
| TCAAGGAACTTACCTTGACA+TGG | 0.657148 | 8_2:+41953476 | None:intergenic |
| CTACTACAAGGACCATGTCA+AGG | 0.659291 | 8_2:-41953488 | Msa1248270:intron |
| GGATGAGTCGACAAGAGGAA+GGG | 0.663089 | 8_2:-41953809 | Msa1248270:CDS |
| ACAAACTGTCATACCAACTG+AGG | 0.663360 | 8_2:+41953762 | None:intergenic |
| GGAGGAAGATGAATGGCAGA+TGG | 0.665469 | 8_2:-41953920 | Msa1248270:CDS |
| GAACCGACAGTGGCAGTGGG+TGG | 0.688335 | 8_2:+41954279 | None:intergenic |
| TGTGAACCGACAGTGGCAGT+GGG | 0.689918 | 8_2:+41954276 | None:intergenic |
| AAAGCACAGTATGTCAAGTG+GGG | 0.694927 | 8_2:-41953574 | Msa1248270:CDS |
| TACCTGTAACGTATCACCAG+AGG | 0.699288 | 8_2:+41953267 | None:intergenic |
| TGCTGATTGTGAACCGACAG+TGG | 0.705214 | 8_2:+41954269 | None:intergenic |
| GAGGAGTCAGAGGTGCATCG+AGG | 0.724283 | 8_2:+41953286 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAAATACATTCAATTT+TGG | + | chr8_2:41953443-41953462 | None:intergenic | 10.0% |
| !!! | AATTAAATATATATGGTTTT+TGG | - | chr8_2:41953610-41953629 | Msa1248270:CDS | 10.0% |
| !!! | TTTAAAAATACATTCAATTT+TGG | + | chr8_2:41953443-41953462 | None:intergenic | 10.0% |
| !!! | AATTAAATATATATGGTTTT+TGG | - | chr8_2:41953610-41953629 | Msa1248270:CDS | 10.0% |
| !! | TGTTAATTCTAATTAACTTT+AGG | - | chr8_2:41953582-41953601 | Msa1248270:CDS | 15.0% |
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | + | chr8_2:41954141-41954160 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | - | chr8_2:41954141-41954160 | Msa1248270:intron | 15.0% |
| !! | TGTTAATTCTAATTAACTTT+AGG | - | chr8_2:41953582-41953601 | Msa1248270:CDS | 15.0% |
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | + | chr8_2:41954141-41954160 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | - | chr8_2:41954141-41954160 | Msa1248270:intron | 15.0% |
| !!! | AATTCTAATTCCTTTAAAGT+TGG | + | chr8_2:41953522-41953541 | None:intergenic | 20.0% |
| !! | TTAAAGGAATTAGAATTTCA+TGG | - | chr8_2:41953525-41953544 | Msa1248270:CDS | 20.0% |
| !! | GGCACTTAATTAAATATATA+TGG | - | chr8_2:41953603-41953622 | Msa1248270:CDS | 20.0% |
| !!! | TATATATGGTTTTTGGTTTA+AGG | - | chr8_2:41953617-41953636 | Msa1248270:CDS | 20.0% |
| !!! | AATTCTAATTCCTTTAAAGT+TGG | + | chr8_2:41953522-41953541 | None:intergenic | 20.0% |
| !! | TTAAAGGAATTAGAATTTCA+TGG | - | chr8_2:41953525-41953544 | Msa1248270:CDS | 20.0% |
| !! | GGCACTTAATTAAATATATA+TGG | - | chr8_2:41953603-41953622 | Msa1248270:CDS | 20.0% |
| !!! | TATATATGGTTTTTGGTTTA+AGG | - | chr8_2:41953617-41953636 | Msa1248270:CDS | 20.0% |
| ! | ATGACTAGAATTTGTGTTTA+TGG | - | chr8_2:41953387-41953406 | Msa1248270:intron | 25.0% |
| ! | TTATTTGTGACCAACTTTAA+AGG | - | chr8_2:41953509-41953528 | Msa1248270:CDS | 25.0% |
| ! | AATCATATTATTAGAGTCTC+AGG | - | chr8_2:41953558-41953577 | Msa1248270:CDS | 25.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | - | chr8_2:41953885-41953904 | Msa1248270:CDS | 25.0% |
| !! | TATTGTCATTGGTTAACAAT+TGG | - | chr8_2:41953956-41953975 | Msa1248270:intron | 25.0% |
| !! | ATTGTCATTGGTTAACAATT+GGG | - | chr8_2:41953957-41953976 | Msa1248270:intron | 25.0% |
| !! | AACAGGAAGAATTAAGTTTT+AGG | + | chr8_2:41954124-41954143 | None:intergenic | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | + | chr8_2:41954169-41954188 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | - | chr8_2:41954221-41954240 | Msa1248270:CDS | 25.0% |
| ! | ATGACTAGAATTTGTGTTTA+TGG | - | chr8_2:41953387-41953406 | Msa1248270:intron | 25.0% |
| ! | TTATTTGTGACCAACTTTAA+AGG | - | chr8_2:41953509-41953528 | Msa1248270:CDS | 25.0% |
| ! | AATCATATTATTAGAGTCTC+AGG | - | chr8_2:41953558-41953577 | Msa1248270:CDS | 25.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | - | chr8_2:41953885-41953904 | Msa1248270:CDS | 25.0% |
| !! | TATTGTCATTGGTTAACAAT+TGG | - | chr8_2:41953956-41953975 | Msa1248270:intron | 25.0% |
| !! | ATTGTCATTGGTTAACAATT+GGG | - | chr8_2:41953957-41953976 | Msa1248270:intron | 25.0% |
| !! | AACAGGAAGAATTAAGTTTT+AGG | + | chr8_2:41954124-41954143 | None:intergenic | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | + | chr8_2:41954169-41954188 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | - | chr8_2:41954221-41954240 | Msa1248270:CDS | 25.0% |
| TTTGTTTAACCCTAATGAGA+TGG | - | chr8_2:41953466-41953485 | Msa1248270:intron | 30.0% | |
| CACAAATTACCATCTCATTA+GGG | + | chr8_2:41953478-41953497 | None:intergenic | 30.0% | |
| ACACAAATTACCATCTCATT+AGG | + | chr8_2:41953479-41953498 | None:intergenic | 30.0% | |
| !!! | TTTTGGTTTAAGGAGTGAAA+TGG | - | chr8_2:41953627-41953646 | Msa1248270:CDS | 30.0% |
| TTGAATCCATTGACATAGAA+AGG | + | chr8_2:41953712-41953731 | None:intergenic | 30.0% | |
| ! | TCAATGGATTCAACACTTAT+TGG | - | chr8_2:41953719-41953738 | Msa1248270:intron | 30.0% |
| ! | ATTCAACACTTATTGGTTGA+TGG | - | chr8_2:41953726-41953745 | Msa1248270:intron | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | + | chr8_2:41953880-41953899 | None:intergenic | 30.0% | |
| AATCAGACTCATATTGTCAT+TGG | - | chr8_2:41953945-41953964 | Msa1248270:intron | 30.0% | |
| !!! | TAAGTTTTAGGTACATCTCA+AGG | + | chr8_2:41954112-41954131 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | - | chr8_2:41954244-41954263 | Msa1248270:CDS | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | - | chr8_2:41954245-41954264 | Msa1248270:CDS | 30.0% |
| TTTGTTTAACCCTAATGAGA+TGG | - | chr8_2:41953466-41953485 | Msa1248270:intron | 30.0% | |
| CACAAATTACCATCTCATTA+GGG | + | chr8_2:41953478-41953497 | None:intergenic | 30.0% | |
| ACACAAATTACCATCTCATT+AGG | + | chr8_2:41953479-41953498 | None:intergenic | 30.0% | |
| !!! | TTTTGGTTTAAGGAGTGAAA+TGG | - | chr8_2:41953627-41953646 | Msa1248270:CDS | 30.0% |
| TTGAATCCATTGACATAGAA+AGG | + | chr8_2:41953712-41953731 | None:intergenic | 30.0% | |
| ! | TCAATGGATTCAACACTTAT+TGG | - | chr8_2:41953719-41953738 | Msa1248270:intron | 30.0% |
| ! | ATTCAACACTTATTGGTTGA+TGG | - | chr8_2:41953726-41953745 | Msa1248270:intron | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | + | chr8_2:41953880-41953899 | None:intergenic | 30.0% | |
| AATCAGACTCATATTGTCAT+TGG | - | chr8_2:41953945-41953964 | Msa1248270:intron | 30.0% | |
| !!! | TAAGTTTTAGGTACATCTCA+AGG | + | chr8_2:41954112-41954131 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | - | chr8_2:41954244-41954263 | Msa1248270:CDS | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | - | chr8_2:41954245-41954264 | Msa1248270:CDS | 30.0% |
| GGAAACCAATTTGTAGTGAA+TGG | - | chr8_2:41953682-41953701 | Msa1248270:CDS | 35.0% | |
| ATCCATTGACATAGAAAGGT+TGG | + | chr8_2:41953708-41953727 | None:intergenic | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | - | chr8_2:41953816-41953835 | Msa1248270:CDS | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | + | chr8_2:41953866-41953885 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | + | chr8_2:41953867-41953886 | None:intergenic | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | + | chr8_2:41954043-41954062 | None:intergenic | 35.0% | |
| GGAAACCAATTTGTAGTGAA+TGG | - | chr8_2:41953682-41953701 | Msa1248270:CDS | 35.0% | |
| ATCCATTGACATAGAAAGGT+TGG | + | chr8_2:41953708-41953727 | None:intergenic | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | - | chr8_2:41953816-41953835 | Msa1248270:CDS | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | + | chr8_2:41953866-41953885 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | + | chr8_2:41953867-41953886 | None:intergenic | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | + | chr8_2:41954043-41954062 | None:intergenic | 35.0% | |
| TGGTTTAAGGAGTGAAATGG+AGG | - | chr8_2:41953630-41953649 | Msa1248270:CDS | 40.0% | |
| GTGAAATGGAGGAAGATGAA+TGG | - | chr8_2:41953641-41953660 | Msa1248270:CDS | 40.0% | |
| GTTGGCCATTCACTACAAAT+TGG | + | chr8_2:41953690-41953709 | None:intergenic | 40.0% | |
| !! | TTGGTTGATGGTATTTGCTG+CGG | - | chr8_2:41953738-41953757 | Msa1248270:intron | 40.0% |
| TTCAAACATGCATCCTCAGT+TGG | - | chr8_2:41953793-41953812 | Msa1248270:CDS | 40.0% | |
| ACAAACTGTCATACCAACTG+AGG | + | chr8_2:41953809-41953828 | None:intergenic | 40.0% | |
| ! | CAGTTGGTATGACAGTTTGT+AGG | - | chr8_2:41953809-41953828 | Msa1248270:CDS | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | - | chr8_2:41953815-41953834 | Msa1248270:CDS | 40.0% | |
| TCTCCATTAGCCATCATTGA+AGG | + | chr8_2:41953842-41953861 | None:intergenic | 40.0% | |
| TGAAGTAGTATTCAAGGACC+TGG | - | chr8_2:41953891-41953910 | Msa1248270:CDS | 40.0% | |
| ! | ATTCAAGGACCTGGATTTTG+TGG | - | chr8_2:41953900-41953919 | Msa1248270:CDS | 40.0% |
| TTTCACTCACCACAAAATCC+AGG | + | chr8_2:41953912-41953931 | None:intergenic | 40.0% | |
| ! | GTCATTGGTTAACAATTGGG+AGG | - | chr8_2:41953960-41953979 | Msa1248270:intron | 40.0% |
| ! | GTTAACAATTGGGAGGCATA+TGG | - | chr8_2:41953967-41953986 | Msa1248270:intron | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | - | chr8_2:41953993-41954012 | Msa1248270:intron | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | - | chr8_2:41953994-41954013 | Msa1248270:intron | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | + | chr8_2:41954032-41954051 | None:intergenic | 40.0% | |
| TCAAGGAACTTACCTTGACA+TGG | + | chr8_2:41954095-41954114 | None:intergenic | 40.0% | |
| AGCTCCCAAGCAAAAATTGT+TGG | + | chr8_2:41954252-41954271 | None:intergenic | 40.0% | |
| TGGTTTAAGGAGTGAAATGG+AGG | - | chr8_2:41953630-41953649 | Msa1248270:CDS | 40.0% | |
| GTGAAATGGAGGAAGATGAA+TGG | - | chr8_2:41953641-41953660 | Msa1248270:CDS | 40.0% | |
| GTTGGCCATTCACTACAAAT+TGG | + | chr8_2:41953690-41953709 | None:intergenic | 40.0% | |
| !! | TTGGTTGATGGTATTTGCTG+CGG | - | chr8_2:41953738-41953757 | Msa1248270:intron | 40.0% |
| TTCAAACATGCATCCTCAGT+TGG | - | chr8_2:41953793-41953812 | Msa1248270:CDS | 40.0% | |
| ACAAACTGTCATACCAACTG+AGG | + | chr8_2:41953809-41953828 | None:intergenic | 40.0% | |
| ! | CAGTTGGTATGACAGTTTGT+AGG | - | chr8_2:41953809-41953828 | Msa1248270:CDS | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | - | chr8_2:41953815-41953834 | Msa1248270:CDS | 40.0% | |
| TCTCCATTAGCCATCATTGA+AGG | + | chr8_2:41953842-41953861 | None:intergenic | 40.0% | |
| TGAAGTAGTATTCAAGGACC+TGG | - | chr8_2:41953891-41953910 | Msa1248270:CDS | 40.0% | |
| ! | ATTCAAGGACCTGGATTTTG+TGG | - | chr8_2:41953900-41953919 | Msa1248270:CDS | 40.0% |
| TTTCACTCACCACAAAATCC+AGG | + | chr8_2:41953912-41953931 | None:intergenic | 40.0% | |
| ! | GTCATTGGTTAACAATTGGG+AGG | - | chr8_2:41953960-41953979 | Msa1248270:intron | 40.0% |
| ! | GTTAACAATTGGGAGGCATA+TGG | - | chr8_2:41953967-41953986 | Msa1248270:intron | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | - | chr8_2:41953993-41954012 | Msa1248270:intron | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | - | chr8_2:41953994-41954013 | Msa1248270:intron | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | + | chr8_2:41954032-41954051 | None:intergenic | 40.0% | |
| TCAAGGAACTTACCTTGACA+TGG | + | chr8_2:41954095-41954114 | None:intergenic | 40.0% | |
| AGCTCCCAAGCAAAAATTGT+TGG | + | chr8_2:41954252-41954271 | None:intergenic | 40.0% | |
| ACCGAAGAACAGAGAGATTG+CGG | + | chr8_2:41953337-41953356 | None:intergenic | 45.0% | |
| AATCTCTCTGTTCTTCGGTG+AGG | - | chr8_2:41953338-41953357 | Msa1248270:CDS | 45.0% | |
| TGGCAGATGGTGCAAAAGAA+AGG | - | chr8_2:41953661-41953680 | Msa1248270:CDS | 45.0% | |
| GGCCAACCTTTCTATGTCAA+TGG | - | chr8_2:41953703-41953722 | Msa1248270:intron | 45.0% | |
| ! | AACAATTGGGAGGCATATGG+TGG | - | chr8_2:41953970-41953989 | Msa1248270:intron | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | - | chr8_2:41953992-41954011 | Msa1248270:intron | 45.0% | |
| TTCTCACATCCAACTCTCAG+AGG | - | chr8_2:41954057-41954076 | Msa1248270:intron | 45.0% | |
| ! | TTGTAGTAGCCTCTGAGAGT+TGG | + | chr8_2:41954069-41954088 | None:intergenic | 45.0% |
| AACTCTCAGAGGCTACTACA+AGG | - | chr8_2:41954068-41954087 | Msa1248270:intron | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | - | chr8_2:41954080-41954099 | Msa1248270:intron | 45.0% | |
| ACCGAAGAACAGAGAGATTG+CGG | + | chr8_2:41953337-41953356 | None:intergenic | 45.0% | |
| AATCTCTCTGTTCTTCGGTG+AGG | - | chr8_2:41953338-41953357 | Msa1248270:CDS | 45.0% | |
| TGGCAGATGGTGCAAAAGAA+AGG | - | chr8_2:41953661-41953680 | Msa1248270:CDS | 45.0% | |
| GGCCAACCTTTCTATGTCAA+TGG | - | chr8_2:41953703-41953722 | Msa1248270:intron | 45.0% | |
| ! | AACAATTGGGAGGCATATGG+TGG | - | chr8_2:41953970-41953989 | Msa1248270:intron | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | - | chr8_2:41953992-41954011 | Msa1248270:intron | 45.0% | |
| TTCTCACATCCAACTCTCAG+AGG | - | chr8_2:41954057-41954076 | Msa1248270:intron | 45.0% | |
| ! | TTGTAGTAGCCTCTGAGAGT+TGG | + | chr8_2:41954069-41954088 | None:intergenic | 45.0% |
| AACTCTCAGAGGCTACTACA+AGG | - | chr8_2:41954068-41954087 | Msa1248270:intron | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | - | chr8_2:41954080-41954099 | Msa1248270:intron | 45.0% | |
| ! | TGCTGATTGTGAACCGACAG+TGG | + | chr8_2:41953302-41953321 | None:intergenic | 50.0% |
| CCGAAGAACAGAGAGATTGC+GGG | + | chr8_2:41953336-41953355 | None:intergenic | 50.0% | |
| CCCGCAATCTCTCTGTTCTT+CGG | - | chr8_2:41953333-41953352 | Msa1248270:CDS | 50.0% | |
| GGAGGAAGATGAATGGCAGA+TGG | - | chr8_2:41953648-41953667 | Msa1248270:CDS | 50.0% | |
| GGATGAGTCGACAAGAGGAA+GGG | - | chr8_2:41953759-41953778 | Msa1248270:intron | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | - | chr8_2:41953829-41953848 | Msa1248270:CDS | 50.0% | |
| GGGCCTTCAATGATGGCTAA+TGG | - | chr8_2:41953836-41953855 | Msa1248270:CDS | 50.0% | |
| ! | TGCTGATTGTGAACCGACAG+TGG | + | chr8_2:41953302-41953321 | None:intergenic | 50.0% |
| CCGAAGAACAGAGAGATTGC+GGG | + | chr8_2:41953336-41953355 | None:intergenic | 50.0% | |
| CCCGCAATCTCTCTGTTCTT+CGG | - | chr8_2:41953333-41953352 | Msa1248270:CDS | 50.0% | |
| GGAGGAAGATGAATGGCAGA+TGG | - | chr8_2:41953648-41953667 | Msa1248270:CDS | 50.0% | |
| GGATGAGTCGACAAGAGGAA+GGG | - | chr8_2:41953759-41953778 | Msa1248270:intron | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | - | chr8_2:41953829-41953848 | Msa1248270:CDS | 50.0% | |
| GGGCCTTCAATGATGGCTAA+TGG | - | chr8_2:41953836-41953855 | Msa1248270:CDS | 50.0% | |
| TGTGAACCGACAGTGGCAGT+GGG | + | chr8_2:41953295-41953314 | None:intergenic | 55.0% | |
| TTGTGAACCGACAGTGGCAG+TGG | + | chr8_2:41953296-41953315 | None:intergenic | 55.0% | |
| CGGATGAGTCGACAAGAGGA+AGG | - | chr8_2:41953758-41953777 | Msa1248270:intron | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | - | chr8_2:41953768-41953787 | Msa1248270:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | + | chr8_2:41954295-41954314 | None:intergenic | 55.0% | |
| TGTGAACCGACAGTGGCAGT+GGG | + | chr8_2:41953295-41953314 | None:intergenic | 55.0% | |
| TTGTGAACCGACAGTGGCAG+TGG | + | chr8_2:41953296-41953315 | None:intergenic | 55.0% | |
| CGGATGAGTCGACAAGAGGA+AGG | - | chr8_2:41953758-41953777 | Msa1248270:intron | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | - | chr8_2:41953768-41953787 | Msa1248270:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | + | chr8_2:41954295-41954314 | None:intergenic | 55.0% | |
| GTGGCAGTGGGTGGAGATCA+CGG | + | chr8_2:41953283-41953302 | None:intergenic | 60.0% | |
| TCTCCACCCACTGCCACTGT+CGG | - | chr8_2:41953286-41953305 | Msa1248270:CDS | 60.0% | |
| GCTGCGGATGAGTCGACAAG+AGG | - | chr8_2:41953754-41953773 | Msa1248270:intron | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | - | chr8_2:41954006-41954025 | Msa1248270:intron | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | + | chr8_2:41954285-41954304 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | - | chr8_2:41954285-41954304 | Msa1248270:CDS | 60.0% | |
| GTGGCAGTGGGTGGAGATCA+CGG | + | chr8_2:41953283-41953302 | None:intergenic | 60.0% | |
| TCTCCACCCACTGCCACTGT+CGG | - | chr8_2:41953286-41953305 | Msa1248270:CDS | 60.0% | |
| GCTGCGGATGAGTCGACAAG+AGG | - | chr8_2:41953754-41953773 | Msa1248270:intron | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | - | chr8_2:41954006-41954025 | Msa1248270:intron | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | + | chr8_2:41954285-41954304 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | - | chr8_2:41954285-41954304 | Msa1248270:CDS | 60.0% | |
| GAACCGACAGTGGCAGTGGG+TGG | + | chr8_2:41953292-41953311 | None:intergenic | 65.0% | |
| GAACCGACAGTGGCAGTGGG+TGG | + | chr8_2:41953292-41953311 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 41953270 | 41954320 | 41953270 | ID=Msa1248270;Name=Msa1248270 |
| chr8_2 | mRNA | 41953270 | 41954320 | 41953270 | ID=Msa1248270-mRNA-1;Parent=Msa1248270;Name=Msa1248270-mRNA-1;_AED=0.12;_eAED=0.23;_QI=0|0|0|0.8|0.25|0.4|5|0|236 |
| chr8_2 | exon | 41954159 | 41954320 | 41954159 | ID=Msa1248270-mRNA-1:exon:12778;Parent=Msa1248270-mRNA-1 |
| chr8_2 | exon | 41954011 | 41954018 | 41954011 | ID=Msa1248270-mRNA-1:exon:12777;Parent=Msa1248270-mRNA-1 |
| chr8_2 | exon | 41953768 | 41953951 | 41953768 | ID=Msa1248270-mRNA-1:exon:12776;Parent=Msa1248270-mRNA-1 |
| chr8_2 | exon | 41953489 | 41953719 | 41953489 | ID=Msa1248270-mRNA-1:exon:12775;Parent=Msa1248270-mRNA-1 |
| chr8_2 | exon | 41953270 | 41953392 | 41953270 | ID=Msa1248270-mRNA-1:exon:12774;Parent=Msa1248270-mRNA-1 |
| chr8_2 | CDS | 41954159 | 41954320 | 41954159 | ID=Msa1248270-mRNA-1:cds;Parent=Msa1248270-mRNA-1 |
| chr8_2 | CDS | 41954011 | 41954018 | 41954011 | ID=Msa1248270-mRNA-1:cds;Parent=Msa1248270-mRNA-1 |
| chr8_2 | CDS | 41953768 | 41953951 | 41953768 | ID=Msa1248270-mRNA-1:cds;Parent=Msa1248270-mRNA-1 |
| chr8_2 | CDS | 41953489 | 41953719 | 41953489 | ID=Msa1248270-mRNA-1:cds;Parent=Msa1248270-mRNA-1 |
| chr8_2 | CDS | 41953270 | 41953392 | 41953270 | ID=Msa1248270-mRNA-1:cds;Parent=Msa1248270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
