Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115710 | sp|Q9FMW4|GEML8_ARATH | 58.219 | 146 | 61 | 0 | 245 | 390 | 69 | 214 | 5.04e-57 | 189 |
| Msa0115710 | sp|Q9FMW4|GEML8_ARATH | 46.907 | 194 | 97 | 3 | 19 | 210 | 12 | 201 | 2.75e-53 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115710 | A0A371GW26 | 58.696 | 414 | 118 | 7 | 3 | 392 | 250 | 634 | 9.07e-156 | 463 |
| Msa0115710 | A0A371GW26 | 59.080 | 413 | 116 | 8 | 2 | 390 | 59 | 442 | 1.35e-150 | 450 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0104670 | Msa0115710 | 0.810784 | 9.701873e-51 | -8.615850e-47 |
| Msa0115710 | Msa0241140 | 0.800885 | 1.168117e-48 | -8.615850e-47 |
| Msa0115710 | Msa0817460 | 0.800851 | 1.187019e-48 | -8.615850e-47 |
| Msa0115710 | Msa1325410 | -0.806655 | 7.404369e-50 | -8.615850e-47 |
| Msa0115710 | Msa1416180 | 0.848939 | 4.451102e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115710 | MtrunA17_Chr1g0212171 | 89.952 | 209 | 17 | 1 | 1 | 209 | 1 | 205 | 2.65e-131 | 376 |
| Msa0115710 | MtrunA17_Chr1g0212171 | 84.916 | 179 | 23 | 1 | 218 | 396 | 51 | 225 | 1.04e-106 | 313 |
| Msa0115710 | MtrunA17_Chr1g0212181 | 78.469 | 209 | 38 | 2 | 1 | 209 | 1 | 202 | 4.99e-112 | 327 |
| Msa0115710 | MtrunA17_Chr1g0212181 | 84.946 | 186 | 24 | 1 | 219 | 404 | 49 | 230 | 4.31e-111 | 325 |
| Msa0115710 | MtrunA17_Chr1g0212121 | 75.238 | 210 | 45 | 2 | 1 | 210 | 1 | 203 | 1.17e-109 | 321 |
| Msa0115710 | MtrunA17_Chr1g0212121 | 77.143 | 175 | 36 | 1 | 218 | 392 | 48 | 218 | 3.44e-93 | 279 |
| Msa0115710 | MtrunA17_Chr1g0162171 | 57.219 | 187 | 66 | 2 | 216 | 392 | 41 | 223 | 4.29e-68 | 215 |
| Msa0115710 | MtrunA17_Chr1g0162171 | 51.852 | 216 | 83 | 4 | 5 | 210 | 4 | 208 | 9.33e-68 | 214 |
| Msa0115710 | MtrunA17_Chr1g0212091 | 53.052 | 213 | 90 | 5 | 1 | 210 | 1 | 206 | 6.47e-68 | 214 |
| Msa0115710 | MtrunA17_Chr1g0212091 | 57.738 | 168 | 67 | 1 | 226 | 393 | 59 | 222 | 2.10e-65 | 208 |
| Msa0115710 | MtrunA17_Chr8g0388871 | 47.090 | 189 | 94 | 3 | 206 | 392 | 1 | 185 | 4.53e-51 | 169 |
| Msa0115710 | MtrunA17_Chr8g0388871 | 50.331 | 151 | 70 | 2 | 60 | 209 | 23 | 169 | 4.54e-42 | 146 |
| Msa0115710 | MtrunA17_Chr6g0481891 | 50.633 | 158 | 74 | 1 | 236 | 393 | 47 | 200 | 8.71e-48 | 162 |
| Msa0115710 | MtrunA17_Chr6g0481891 | 42.222 | 180 | 95 | 2 | 30 | 209 | 13 | 183 | 5.60e-41 | 144 |
| Msa0115710 | MtrunA17_Chr1g0212111 | 60.360 | 111 | 44 | 0 | 282 | 392 | 47 | 157 | 1.30e-40 | 142 |
| Msa0115710 | MtrunA17_Chr1g0212111 | 61.458 | 96 | 37 | 0 | 115 | 210 | 47 | 142 | 8.85e-34 | 124 |
| Msa0115710 | MtrunA17_Chr1g0212131 | 81.538 | 65 | 12 | 0 | 329 | 393 | 1 | 65 | 4.16e-32 | 115 |
| Msa0115710 | MtrunA17_Chr1g0212131 | 95.833 | 48 | 2 | 0 | 162 | 209 | 1 | 48 | 3.55e-27 | 102 |
| Msa0115710 | MtrunA17_Chr7g0251801 | 37.838 | 148 | 92 | 0 | 244 | 391 | 129 | 276 | 1.33e-30 | 119 |
| Msa0115710 | MtrunA17_Chr7g0251801 | 34.839 | 155 | 97 | 1 | 56 | 210 | 112 | 262 | 1.20e-28 | 113 |
| Msa0115710 | MtrunA17_Chr3g0133221 | 35.616 | 146 | 93 | 1 | 244 | 389 | 111 | 255 | 1.68e-29 | 115 |
| Msa0115710 | MtrunA17_Chr3g0133221 | 37.594 | 133 | 82 | 1 | 77 | 209 | 111 | 242 | 2.84e-27 | 108 |
| Msa0115710 | MtrunA17_Chr8g0367701 | 35.256 | 156 | 96 | 2 | 59 | 214 | 109 | 259 | 2.00e-28 | 112 |
| Msa0115710 | MtrunA17_Chr8g0367701 | 35.616 | 146 | 93 | 1 | 244 | 389 | 123 | 267 | 2.45e-28 | 112 |
| Msa0115710 | MtrunA17_Chr2g0315771 | 32.967 | 182 | 114 | 3 | 214 | 391 | 50 | 227 | 8.77e-23 | 96.3 |
| Msa0115710 | MtrunA17_Chr2g0315771 | 35.099 | 151 | 93 | 2 | 60 | 209 | 66 | 212 | 2.42e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115710 | AT5G23370.1 | 58.219 | 146 | 61 | 0 | 245 | 390 | 69 | 214 | 5.12e-58 | 189 |
| Msa0115710 | AT5G23370.1 | 46.907 | 194 | 97 | 3 | 19 | 210 | 12 | 201 | 2.80e-54 | 179 |
| Msa0115710 | AT5G08350.1 | 50.794 | 189 | 81 | 3 | 209 | 390 | 30 | 213 | 7.75e-58 | 189 |
| Msa0115710 | AT5G08350.1 | 48.352 | 182 | 89 | 3 | 30 | 210 | 23 | 200 | 1.72e-52 | 175 |
| Msa0115710 | AT5G23350.1 | 56.849 | 146 | 63 | 0 | 245 | 390 | 69 | 214 | 3.76e-56 | 184 |
| Msa0115710 | AT5G23350.1 | 50.000 | 170 | 78 | 2 | 58 | 224 | 53 | 218 | 1.64e-52 | 175 |
| Msa0115710 | AT5G23360.1 | 53.741 | 147 | 68 | 0 | 245 | 391 | 61 | 207 | 7.18e-54 | 178 |
| Msa0115710 | AT5G23360.1 | 47.802 | 182 | 83 | 4 | 30 | 210 | 23 | 193 | 4.78e-50 | 168 |
| Msa0115710 | AT5G13200.1 | 40.136 | 147 | 88 | 0 | 244 | 390 | 115 | 261 | 8.90e-33 | 124 |
| Msa0115710 | AT5G13200.1 | 36.424 | 151 | 92 | 1 | 60 | 210 | 102 | 248 | 4.29e-29 | 114 |
| Msa0115710 | AT4G01600.3 | 35.976 | 164 | 100 | 2 | 227 | 389 | 26 | 185 | 8.23e-30 | 114 |
| Msa0115710 | AT4G01600.3 | 35.152 | 165 | 102 | 2 | 50 | 213 | 16 | 176 | 4.14e-29 | 112 |
| Msa0115710 | AT4G01600.1 | 35.976 | 164 | 100 | 2 | 227 | 389 | 65 | 224 | 1.76e-29 | 114 |
| Msa0115710 | AT4G01600.1 | 35.152 | 165 | 102 | 2 | 50 | 213 | 55 | 215 | 6.72e-29 | 113 |
| Msa0115710 | AT4G01600.2 | 36.735 | 147 | 92 | 1 | 244 | 389 | 73 | 219 | 1.38e-28 | 112 |
| Msa0115710 | AT4G01600.2 | 33.939 | 165 | 99 | 2 | 50 | 213 | 55 | 210 | 3.16e-26 | 105 |
| Msa0115710 | AT1G28200.1 | 33.136 | 169 | 109 | 3 | 224 | 389 | 87 | 254 | 4.09e-27 | 108 |
| Msa0115710 | AT1G28200.1 | 33.333 | 150 | 95 | 2 | 60 | 209 | 97 | 241 | 1.31e-26 | 107 |
| Msa0115710 | AT1G28200.2 | 33.136 | 169 | 109 | 3 | 224 | 389 | 87 | 254 | 4.09e-27 | 108 |
| Msa0115710 | AT1G28200.2 | 33.333 | 150 | 95 | 2 | 60 | 209 | 97 | 241 | 1.31e-26 | 107 |
| Msa0115710 | AT2G22475.1 | 34.868 | 152 | 94 | 2 | 59 | 210 | 133 | 279 | 7.90e-27 | 109 |
| Msa0115710 | AT2G22475.1 | 33.113 | 151 | 100 | 1 | 244 | 394 | 147 | 296 | 6.28e-26 | 106 |
| Msa0115710 | AT5G13200.2 | 39.362 | 94 | 57 | 0 | 244 | 337 | 115 | 208 | 1.01e-16 | 79.0 |
| Msa0115710 | AT5G13200.2 | 35.135 | 111 | 68 | 1 | 60 | 170 | 102 | 208 | 1.14e-16 | 79.0 |
| Msa0115710 | AT2G22475.2 | 31.356 | 118 | 76 | 2 | 59 | 176 | 133 | 245 | 6.31e-12 | 65.9 |
Find 83 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATGACATAGTTAT+TGG | 0.132924 | 1_3:-34647273 | Msa0115710:CDS |
| TCTAAGTATGTAGTATTTAA+AGG | 0.275399 | 1_3:+34647431 | None:intergenic |
| GTTCAGGACATACCTTATAT+TGG | 0.280926 | 1_3:+34642882 | None:intergenic |
| AAGGGTACTCACCATGTTCT+TGG | 0.303202 | 1_3:+34646990 | None:intergenic |
| AGGGGTACTCACCATGTTCT+TGG | 0.305997 | 1_3:+34643314 | None:intergenic |
| CCCTTCATTGACCTCAAAAT+AGG | 0.349137 | 1_3:+34642259 | None:intergenic |
| ATGAAGGGAGATTATTGTTA+TGG | 0.350767 | 1_3:-34642244 | Msa0115710:three_prime_UTR |
| GAATGAATACTCTGCCAATA+TGG | 0.352484 | 1_3:+34642300 | None:intergenic |
| ACCACATCTGGTCCTCTATC+TGG | 0.375547 | 1_3:-34646714 | Msa0115710:CDS |
| TAGAGGAAGTTATGCTTACT+TGG | 0.381511 | 1_3:+34647388 | None:intergenic |
| AGGGGCTCAAATTCTTCAAA+TGG | 0.390450 | 1_3:-34646820 | Msa0115710:CDS |
| TAAAGAGGACGTTGAGCTTA+GGG | 0.393383 | 1_3:-34643117 | Msa0115710:CDS |
| ACACACTTGATCTTCTTCAA+TGG | 0.403217 | 1_3:+34646500 | None:intergenic |
| AAGATTTGTGTTTGGTTGAA+AGG | 0.405842 | 1_3:+34647325 | None:intergenic |
| TAAAGAGGACATTGAGCTTA+GGG | 0.407061 | 1_3:-34646839 | Msa0115710:CDS |
| CTAAGTATGTAGTATTTAAA+GGG | 0.415500 | 1_3:+34647432 | None:intergenic |
| AATGCGTAGGATCCAATATA+AGG | 0.416880 | 1_3:-34642894 | Msa0115710:intron |
| ATAAAGAGGACGTTGAGCTT+AGG | 0.430032 | 1_3:-34643118 | Msa0115710:CDS |
| TGTTATCTCTCCACCACATC+TGG | 0.435363 | 1_3:-34646726 | Msa0115710:CDS |
| CGAAGATATGCTTTGAAATG+AGG | 0.444217 | 1_3:-34642525 | Msa0115710:three_prime_UTR |
| ATGTTATTATGCTCTAATAG+TGG | 0.463690 | 1_3:+34642598 | None:intergenic |
| TGTTATCTCTCCACCACATC+CGG | 0.474249 | 1_3:-34643004 | Msa0115710:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | 1_3:-34642966 | Msa0115710:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | 1_3:-34646688 | Msa0115710:CDS |
| ATAAAGAGGACATTGAGCTT+AGG | 0.479333 | 1_3:-34646840 | Msa0115710:CDS |
| TGATATATAAGATTTGTGTT+TGG | 0.481083 | 1_3:+34647317 | None:intergenic |
| ACCACATCCGGTCCTCTAGC+TGG | 0.484625 | 1_3:-34642992 | Msa0115710:CDS |
| GAAAGGACTATAGCAGTAGA+AGG | 0.488048 | 1_3:+34647342 | None:intergenic |
| CTACATACTTAGACTACAAA+GGG | 0.492097 | 1_3:-34647421 | Msa0115710:five_prime_UTR |
| CTTGATCTTCTTCAATGGAA+TGG | 0.496717 | 1_3:+34646505 | None:intergenic |
| GGGGCTCAAATTCTTCAAAT+GGG | 0.501460 | 1_3:-34646819 | Msa0115710:CDS |
| CAGTAGAAGGTGAAGAGGAA+TGG | 0.502728 | 1_3:+34647355 | None:intergenic |
| TGTTAATATAGAGACCATAT+TGG | 0.504609 | 1_3:-34642314 | Msa0115710:three_prime_UTR |
| GACTCTTTGTGAGAGACTAT+CGG | 0.507719 | 1_3:+34647012 | None:intergenic |
| CTAACCAGGAAAAGCGCTGC+AGG | 0.509603 | 1_3:-34647039 | Msa0115710:CDS |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | 1_3:+34642940 | None:intergenic |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | 1_3:+34646662 | None:intergenic |
| AATGTGTAGGATCCGCTATA+AGG | 0.514153 | 1_3:-34646616 | Msa0115710:intron |
| CTTTGAAATGAGGGACTTGG+TGG | 0.527624 | 1_3:-34642515 | Msa0115710:three_prime_UTR |
| CTTGATATTCTTCAGTGGAA+TGG | 0.537049 | 1_3:+34642787 | None:intergenic |
| GAAGATATGCTTTGAAATGA+GGG | 0.540103 | 1_3:-34642524 | Msa0115710:three_prime_UTR |
| TGTTATGGTAGAAAACAAGA+TGG | 0.540307 | 1_3:-34642229 | Msa0115710:three_prime_UTR |
| ATGAAGAGGAGACCAGATAG+AGG | 0.541014 | 1_3:+34646702 | None:intergenic |
| AACTTTCAAATATCTCGAGC+AGG | 0.543455 | 1_3:-34642657 | Msa0115710:CDS |
| ACCAGCTAGAGGACCGGATG+TGG | 0.545746 | 1_3:+34642991 | None:intergenic |
| TTGATATTGACATTGATTAG+TGG | 0.546039 | 1_3:+34647182 | None:intergenic |
| GGGGCTCAAATTCTTCAAGT+AGG | 0.547691 | 1_3:-34643097 | Msa0115710:CDS |
| TATAGCAGTAGAAGGTGAAG+AGG | 0.548176 | 1_3:+34647350 | None:intergenic |
| GAGGAGACCAGCTAGAGGAC+CGG | 0.553573 | 1_3:+34642985 | None:intergenic |
| TTAGTGTGAGAGAAGGAGAG+AGG | 0.554677 | 1_3:-34643045 | Msa0115710:CDS |
| AGCTAGAGGACCGGATGTGG+TGG | 0.559552 | 1_3:+34642994 | None:intergenic |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | 1_3:-34643132 | Msa0115710:CDS |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | 1_3:-34646854 | Msa0115710:CDS |
| ACTACATACTTAGACTACAA+AGG | 0.565243 | 1_3:-34647422 | Msa0115710:five_prime_UTR |
| ATGGTTCATTCATATAGTAT+CGG | 0.565704 | 1_3:-34642431 | Msa0115710:three_prime_UTR |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | 1_3:-34642920 | Msa0115710:CDS |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | 1_3:-34646642 | Msa0115710:CDS |
| ATGCTTTGAAATGAGGGACT+TGG | 0.568129 | 1_3:-34642518 | Msa0115710:three_prime_UTR |
| AGGTAGAGCAAATTCTAACC+AGG | 0.586749 | 1_3:-34647053 | Msa0115710:CDS |
| ATATTAACAGTCACTGCTTG+CGG | 0.587455 | 1_3:+34642328 | None:intergenic |
| TTAGTGTGACAGAAGGGGAA+AGG | 0.588982 | 1_3:-34646767 | Msa0115710:CDS |
| AATTCTTCAAATGGGTGGAG+TGG | 0.590708 | 1_3:-34646811 | Msa0115710:CDS |
| CCAGGAAAAGCGCTGCAGGA+AGG | 0.598245 | 1_3:-34647035 | Msa0115710:CDS |
| GCTCAAATTCTTCAAGTAGG+TGG | 0.599531 | 1_3:-34643094 | Msa0115710:CDS |
| ATCAGAAAGGTCAAATGTGT+AGG | 0.600965 | 1_3:-34646629 | Msa0115710:CDS |
| ATATGATCAAATTCAACAGT+CGG | 0.601025 | 1_3:-34647229 | Msa0115710:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | 1_3:-34642907 | Msa0115710:CDS |
| AATTCTTCAAGTAGGTGGAG+TGG | 0.608118 | 1_3:-34643089 | Msa0115710:CDS |
| GCTCAAATTCTTCAAATGGG+TGG | 0.612320 | 1_3:-34646816 | Msa0115710:CDS |
| TGTTGATGAAAGAGATCACT+CGG | 0.612401 | 1_3:-34642372 | Msa0115710:three_prime_UTR |
| AGATAGAGGACCAGATGTGG+TGG | 0.622202 | 1_3:+34646716 | None:intergenic |
| ACACACTTGATATTCTTCAG+TGG | 0.629365 | 1_3:+34642782 | None:intergenic |
| ACCAGATAGAGGACCAGATG+TGG | 0.629958 | 1_3:+34646713 | None:intergenic |
| ATATGTTGCTGAGATGATTG+TGG | 0.633252 | 1_3:+34647248 | None:intergenic |
| AAAGAGGACGTTGAGCTTAG+GGG | 0.634036 | 1_3:-34643116 | Msa0115710:CDS |
| TCACAAAGAGTCCAAGAACA+TGG | 0.635074 | 1_3:-34647001 | Msa0115710:CDS |
| TGAAGAAGATCAAGTGTGTG+AGG | 0.640170 | 1_3:-34646496 | Msa0115710:CDS |
| AATTCCAACCAGCAAAAGCG+CGG | 0.640219 | 1_3:-34643367 | Msa0115710:CDS |
| ATGAAGAGGAGACCAGCTAG+AGG | 0.648963 | 1_3:+34642980 | None:intergenic |
| ACACAAAGAGTCCAAGAACA+TGG | 0.649976 | 1_3:-34643325 | Msa0115710:CDS |
| AAAGAGGACATTGAGCTTAG+GGG | 0.650107 | 1_3:-34646838 | Msa0115710:CDS |
| GTTCACGACTTACCTTATAG+CGG | 0.664347 | 1_3:+34646604 | None:intergenic |
| CATTCATCGACAGAGAAGAG+AGG | 0.697110 | 1_3:-34642282 | Msa0115710:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAGTTTTTTTATATTTT+AGG | + | chr1_3:34646976-34646995 | None:intergenic | 10.0% |
| !! | ACATAACAAATATTAGATTA+GGG | + | chr1_3:34643112-34643131 | None:intergenic | 15.0% |
| !! | TACATAACAAATATTAGATT+AGG | + | chr1_3:34643113-34643132 | None:intergenic | 15.0% |
| !!! | TGAATTTTAAATTCAATGAA+GGG | - | chr1_3:34643633-34643652 | Msa0115710:intron | 15.0% |
| !!! | TGACTATCAAAATTTAAAAT+TGG | + | chr1_3:34644107-34644126 | None:intergenic | 15.0% |
| !!! | TAAATTTATTCTGCTTATTT+TGG | + | chr1_3:34645315-34645334 | None:intergenic | 15.0% |
| !!! | TTCATCATTTACTTTATTTT+TGG | - | chr1_3:34645518-34645537 | Msa0115710:intron | 15.0% |
| !!! | AAGATAATATTTTGACATAA+TGG | + | chr1_3:34645768-34645787 | None:intergenic | 15.0% |
| !! | CTAAGTATGTAGTATTTAAA+GGG | + | chr1_3:34642216-34642235 | None:intergenic | 20.0% |
| !! | TCTAAGTATGTAGTATTTAA+AGG | + | chr1_3:34642217-34642236 | None:intergenic | 20.0% |
| !! | TGATATATAAGATTTGTGTT+TGG | + | chr1_3:34642331-34642350 | None:intergenic | 20.0% |
| !!! | ATAAAGTTATACTTTTGCAT+TGG | + | chr1_3:34642497-34642516 | None:intergenic | 20.0% |
| !! | AATTAGATACAAAAGGAAAA+TGG | + | chr1_3:34642728-34642747 | None:intergenic | 20.0% |
| !! | TAAAGAGAATTAGATACAAA+AGG | + | chr1_3:34642735-34642754 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | - | chr1_3:34642791-34642810 | Msa0115710:CDS | 20.0% |
| !!! | ATCTAATATTTGTTATGTAC+AGG | - | chr1_3:34643114-34643133 | Msa0115710:CDS | 20.0% |
| !!! | CTTCATTGAATTTAAAATTC+AGG | + | chr1_3:34643634-34643653 | None:intergenic | 20.0% |
| !!! | CTGAATTTTAAATTCAATGA+AGG | - | chr1_3:34643632-34643651 | Msa0115710:intron | 20.0% |
| !! | ATTATTGTTATGGTTGAAAA+AGG | - | chr1_3:34643658-34643677 | Msa0115710:intron | 20.0% |
| !! | TAATCGACACAATTATTTAA+AGG | + | chr1_3:34643842-34643861 | None:intergenic | 20.0% |
| !! | TCTATATGTTATGTATAAGT+AGG | + | chr1_3:34644482-34644501 | None:intergenic | 20.0% |
| !! | AAGAAAAACTGAAAAAGTAA+AGG | - | chr1_3:34644522-34644541 | Msa0115710:intron | 20.0% |
| !!! | CTTTGTTAGTTACTTTAATT+TGG | - | chr1_3:34644765-34644784 | Msa0115710:intron | 20.0% |
| !! | TTACTAAGTATTCACTTTAT+AGG | + | chr1_3:34645104-34645123 | None:intergenic | 20.0% |
| !! | TAGTAAAGTGAGAAAATTAA+AGG | - | chr1_3:34645118-34645137 | Msa0115710:intron | 20.0% |
| !!! | ATCATTGATTTGTTTATCAA+CGG | - | chr1_3:34645189-34645208 | Msa0115710:intron | 20.0% |
| !! | TAAAATTGAAATCCTAGAAT+AGG | + | chr1_3:34645681-34645700 | None:intergenic | 20.0% |
| !! | TATTTAAAAGGATGAAAAGT+AGG | + | chr1_3:34645887-34645906 | None:intergenic | 20.0% |
| !! | CTAATTTCATTATGTATTGA+TGG | - | chr1_3:34646216-34646235 | Msa0115710:intron | 20.0% |
| !! | CATAAATTGTACCATATTAT+TGG | + | chr1_3:34646376-34646395 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | - | chr1_3:34642791-34642810 | Msa0115710:CDS | 20.0% |
| !!! | TATATGTACTTATTTAGTTC+AGG | + | chr1_3:34646782-34646801 | None:intergenic | 20.0% |
| !! | ACATAACAAATATTGGATTA+GGG | + | chr1_3:34646830-34646849 | None:intergenic | 20.0% |
| ! | ATATGATCAAATTCAACAGT+CGG | - | chr1_3:34642416-34642435 | Msa0115710:three_prime_UTR | 25.0% |
| !! | TTGATATTGACATTGATTAG+TGG | + | chr1_3:34642466-34642485 | None:intergenic | 25.0% |
| ! | TGAAATTAGATTCTTGTAAC+AGG | + | chr1_3:34642523-34642542 | None:intergenic | 25.0% |
| !!! | TTCATCTAATCAAGTATTGA+TGG | - | chr1_3:34642539-34642558 | Msa0115710:three_prime_UTR | 25.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | - | chr1_3:34643003-34643022 | Msa0115710:CDS | 25.0% |
| !! | TGAAAGTTTTCTGATACTTT+AGG | + | chr1_3:34643258-34643277 | None:intergenic | 25.0% |
| ! | TTCTTTATGTTATGCTCTAA+GGG | + | chr1_3:34643335-34643354 | None:intergenic | 25.0% |
| ! | ATTCTTTATGTTATGCTCTA+AGG | + | chr1_3:34643336-34643355 | None:intergenic | 25.0% |
| !! | CAACATATTGTTGATAAAGT+TGG | - | chr1_3:34643507-34643526 | Msa0115710:intron | 25.0% |
| ! | GCTTATTTAAACTAACTGAT+TGG | + | chr1_3:34643820-34643839 | None:intergenic | 25.0% |
| ! | TAAAAAAGTAAGAATCCTTC+AGG | + | chr1_3:34643937-34643956 | None:intergenic | 25.0% |
| !!! | AAGGATTCTTACTTTTTTAG+TGG | - | chr1_3:34643938-34643957 | Msa0115710:intron | 25.0% |
| ! | ATTTCATCAAGAGAGTTATA+TGG | - | chr1_3:34644252-34644271 | Msa0115710:intron | 25.0% |
| ! | CAAGGTAAGAAAAAGTAAAT+AGG | - | chr1_3:34644429-34644448 | Msa0115710:intron | 25.0% |
| ! | TATAAGTAGGATGTAGTATA+TGG | + | chr1_3:34644469-34644488 | None:intergenic | 25.0% |
| ! | AAAACTGAAAAAGTAAAGGA+AGG | - | chr1_3:34644526-34644545 | Msa0115710:intron | 25.0% |
| ! | TTTGTTCTACTACTATATAC+CGG | + | chr1_3:34644617-34644636 | None:intergenic | 25.0% |
| ! | TAGTAGAACAAAATCAAAAG+TGG | - | chr1_3:34644625-34644644 | Msa0115710:intron | 25.0% |
| ! | AAATCAAAAGTGGTAGTTAA+TGG | - | chr1_3:34644635-34644654 | Msa0115710:intron | 25.0% |
| ! | AGCATTTCAATCATATATCT+TGG | - | chr1_3:34645360-34645379 | Msa0115710:intron | 25.0% |
| ! | AGATAGTAAAAATGAAGGTA+GGG | - | chr1_3:34645383-34645402 | Msa0115710:intron | 25.0% |
| ! | GAATTCTCTAAATTCTCTTA+AGG | + | chr1_3:34645435-34645454 | None:intergenic | 25.0% |
| !!! | TAGAATAGGTTTGTTTTTAG+AGG | + | chr1_3:34645667-34645686 | None:intergenic | 25.0% |
| ! | TCTAAAAACAAACCTATTCT+AGG | - | chr1_3:34645666-34645685 | Msa0115710:intron | 25.0% |
| ! | AGCATGTTGAATGATTAATA+AGG | + | chr1_3:34646022-34646041 | None:intergenic | 25.0% |
| ! | ATATAGATACCACATACAAA+AGG | + | chr1_3:34646410-34646429 | None:intergenic | 25.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | - | chr1_3:34643003-34643022 | Msa0115710:CDS | 25.0% |
| ! | CACATAACAAATATTGGATT+AGG | + | chr1_3:34646831-34646850 | None:intergenic | 25.0% |
| !! | ATGTTTATGTACTTTTGTGT+TGG | + | chr1_3:34643196-34643215 | None:intergenic | 25.0% |
| ! | ATGTTATTATGCTCTAATAG+TGG | + | chr1_3:34647050-34647069 | None:intergenic | 25.0% |
| ! | ATGGTTCATTCATATAGTAT+CGG | - | chr1_3:34647214-34647233 | Msa0115710:CDS | 25.0% |
| ! | TGTTAATATAGAGACCATAT+TGG | - | chr1_3:34647331-34647350 | Msa0115710:five_prime_UTR | 25.0% |
| ACTACATACTTAGACTACAA+AGG | - | chr1_3:34642223-34642242 | Msa0115710:three_prime_UTR | 30.0% | |
| CTACATACTTAGACTACAAA+GGG | - | chr1_3:34642224-34642243 | Msa0115710:three_prime_UTR | 30.0% | |
| AAGATTTGTGTTTGGTTGAA+AGG | + | chr1_3:34642323-34642342 | None:intergenic | 30.0% | |
| CTTCTTCATGACATAGTTAT+TGG | - | chr1_3:34642372-34642391 | Msa0115710:three_prime_UTR | 30.0% | |
| !! | TATACTTTTGCATTGGTGTT+TGG | + | chr1_3:34642490-34642509 | None:intergenic | 30.0% |
| ATAATGTGCTTCAATGTTTC+AGG | - | chr1_3:34642572-34642591 | Msa0115710:three_prime_UTR | 30.0% | |
| GTGAAAAATTTCAGTGAGAT+CGG | - | chr1_3:34642762-34642781 | Msa0115710:CDS | 30.0% | |
| TGAAAAATTTCAGTGAGATC+GGG | - | chr1_3:34642763-34642782 | Msa0115710:CDS | 30.0% | |
| !!! | AGTATTTTAGTGTGACAGAA+GGG | - | chr1_3:34642872-34642891 | Msa0115710:intron | 30.0% |
| !!! | AATTTTGACTTCTGGCTTAT+GGG | - | chr1_3:34643229-34643248 | Msa0115710:intron | 30.0% |
| AACTTTCAAATATATCGAGC+AGG | - | chr1_3:34643270-34643289 | Msa0115710:intron | 30.0% | |
| ! | AAAACACCTCATCATAGTTT+TGG | - | chr1_3:34643448-34643467 | Msa0115710:intron | 30.0% |
| ATGAAGGGAGATTATTGTTA+TGG | - | chr1_3:34643648-34643667 | Msa0115710:intron | 30.0% | |
| TTGTTATGGTTGAAAAAGGA+TGG | - | chr1_3:34643662-34643681 | Msa0115710:intron | 30.0% | |
| !!! | TGTGTCGATTATTTCTTTTG+TGG | - | chr1_3:34643851-34643870 | Msa0115710:intron | 30.0% |
| GTTTCTTAATGCAAAAGAAC+TGG | + | chr1_3:34643915-34643934 | None:intergenic | 30.0% | |
| ! | TTTTGCATTAAGAAACCTGA+AGG | - | chr1_3:34643919-34643938 | Msa0115710:intron | 30.0% |
| AAAGATTAGCATAAGTTAGC+AGG | + | chr1_3:34644315-34644334 | None:intergenic | 30.0% | |
| !!! | TTTCTGAGATTTTTCAATCC+CGG | - | chr1_3:34644595-34644614 | Msa0115710:intron | 30.0% |
| TTGTTCTACTACTATATACC+GGG | + | chr1_3:34644616-34644635 | None:intergenic | 30.0% | |
| TATATTCCCTATTGGCATTA+GGG | + | chr1_3:34644725-34644744 | None:intergenic | 30.0% | |
| AAATTAAGAGATTGAGCACA+TGG | - | chr1_3:34644837-34644856 | Msa0115710:intron | 30.0% | |
| TTTATCTTATGAGTGAGGAT+AGG | + | chr1_3:34645017-34645036 | None:intergenic | 30.0% | |
| ATCCTCACTCATAAGATAAA+TGG | - | chr1_3:34645017-34645036 | Msa0115710:intron | 30.0% | |
| ATCCATTTATCTTATGAGTG+AGG | + | chr1_3:34645022-34645041 | None:intergenic | 30.0% | |
| !!! | TAAGCTGAAGTTTTGTTAAC+TGG | + | chr1_3:34645045-34645064 | None:intergenic | 30.0% |
| CCTAGAGTATGAATGATATT+TGG | + | chr1_3:34645073-34645092 | None:intergenic | 30.0% | |
| CCAAATATCATTCATACTCT+AGG | - | chr1_3:34645070-34645089 | Msa0115710:intron | 30.0% | |
| CTTGGAGATAGTAAAAATGA+AGG | - | chr1_3:34645378-34645397 | Msa0115710:intron | 30.0% | |
| GAGATAGTAAAAATGAAGGT+AGG | - | chr1_3:34645382-34645401 | Msa0115710:intron | 30.0% | |
| TTTGGAAAGTAGGCATTATT+AGG | + | chr1_3:34645552-34645571 | None:intergenic | 30.0% | |
| ATAATGCCTACTTTCCAAAA+TGG | - | chr1_3:34645553-34645572 | Msa0115710:intron | 30.0% | |
| ACAAGATTCAGTAGTGTATA+GGG | + | chr1_3:34645611-34645630 | None:intergenic | 30.0% | |
| AACAAGATTCAGTAGTGTAT+AGG | + | chr1_3:34645612-34645631 | None:intergenic | 30.0% | |
| CTTTCAGAAAAAGATGGTAA+AGG | + | chr1_3:34645733-34645752 | None:intergenic | 30.0% | |
| !!! | TTTTGACATAATGGACTGTT+TGG | + | chr1_3:34645759-34645778 | None:intergenic | 30.0% |
| TATTACATCAACCAAGATCA+TGG | - | chr1_3:34645827-34645846 | Msa0115710:intron | 30.0% | |
| CTAAGGAGGTAGTATTTAAA+AGG | + | chr1_3:34645899-34645918 | None:intergenic | 30.0% | |
| TGAAACTGATGATACATGAT+TGG | + | chr1_3:34646079-34646098 | None:intergenic | 30.0% | |
| TGGATATTGAATTTGACAAG+AGG | + | chr1_3:34646134-34646153 | None:intergenic | 30.0% | |
| ! | ACAAAGTTTTACCTTTGCTT+TGG | + | chr1_3:34646165-34646184 | None:intergenic | 30.0% |
| ! | TAGATGGGTTTCCAATAATA+TGG | - | chr1_3:34646362-34646381 | Msa0115710:intron | 30.0% |
| ! | AACCATTTTCCTTTTGTATG+TGG | - | chr1_3:34646398-34646417 | Msa0115710:intron | 30.0% |
| TACCACATACAAAAGGAAAA+TGG | + | chr1_3:34646403-34646422 | None:intergenic | 30.0% | |
| TGAAAAATTTCAGTGAGACT+CGG | - | chr1_3:34646485-34646504 | Msa0115710:CDS | 30.0% | |
| !! | ATCCAATATTTGTTATGTGC+AGG | - | chr1_3:34646832-34646851 | Msa0115710:CDS | 30.0% |
| !!! | GATTTTGATTTCTGGCTTAT+GGG | - | chr1_3:34646947-34646966 | Msa0115710:intron | 30.0% |
| !! | GAAGATATGCTTTGAAATGA+GGG | - | chr1_3:34647121-34647140 | Msa0115710:intron | 30.0% |
| !!! | TATTTTAACGGGTCAATCTT+GGG | + | chr1_3:34647187-34647206 | None:intergenic | 30.0% |
| !! | ACCATGTGCATCTATTTTAA+CGG | + | chr1_3:34647199-34647218 | None:intergenic | 30.0% |
| ATGAAGGGAGATTATTGTTA+TGG | - | chr1_3:34643648-34643667 | Msa0115710:intron | 30.0% | |
| TGTTATGGTAGAAAACAAGA+TGG | - | chr1_3:34647416-34647435 | Msa0115710:five_prime_UTR | 30.0% | |
| TAGAGGAAGTTATGCTTACT+TGG | + | chr1_3:34642260-34642279 | None:intergenic | 35.0% | |
| ATATGTTGCTGAGATGATTG+TGG | + | chr1_3:34642400-34642419 | None:intergenic | 35.0% | |
| ATAAAGAGGACATTGAGCTT+AGG | - | chr1_3:34642805-34642824 | Msa0115710:intron | 35.0% | |
| TAAAGAGGACATTGAGCTTA+GGG | - | chr1_3:34642806-34642825 | Msa0115710:intron | 35.0% | |
| !!! | CAGTATTTTAGTGTGACAGA+AGG | - | chr1_3:34642871-34642890 | Msa0115710:intron | 35.0% |
| !!! | GTATTTTAGTGTGACAGAAG+GGG | - | chr1_3:34642873-34642892 | Msa0115710:intron | 35.0% |
| ATCAGAAAGGTCAAATGTGT+AGG | - | chr1_3:34643016-34643035 | Msa0115710:CDS | 35.0% | |
| CTTGATCTTCTTCAATGGAA+TGG | + | chr1_3:34643143-34643162 | None:intergenic | 35.0% | |
| ACACACTTGATCTTCTTCAA+TGG | + | chr1_3:34643148-34643167 | None:intergenic | 35.0% | |
| !!! | CAATTTTGACTTCTGGCTTA+TGG | - | chr1_3:34643228-34643247 | Msa0115710:intron | 35.0% |
| !! | TTTATGTTATGCTCTAAGGG+TGG | + | chr1_3:34643332-34643351 | None:intergenic | 35.0% |
| !! | TGAAGATATGCTTTGAAACG+AGG | - | chr1_3:34643413-34643432 | Msa0115710:intron | 35.0% |
| !! | GAAGATATGCTTTGAAACGA+GGG | - | chr1_3:34643414-34643433 | Msa0115710:intron | 35.0% |
| ATGAAGCCAAAACTATGATG+AGG | + | chr1_3:34643457-34643476 | None:intergenic | 35.0% | |
| TGGCTTCATTGATATTAGCT+CGG | - | chr1_3:34643468-34643487 | Msa0115710:intron | 35.0% | |
| TATTAGCTCGGATGTAAACT+TGG | - | chr1_3:34643480-34643499 | Msa0115710:intron | 35.0% | |
| ! | TGGTAATGCAAGAGATCATT+TGG | - | chr1_3:34643527-34643546 | Msa0115710:intron | 35.0% |
| TATGGTTGAAAAAGGATGGA+AGG | - | chr1_3:34643666-34643685 | Msa0115710:intron | 35.0% | |
| !! | TTTTCTTGTAGGGGTTGATT+TGG | + | chr1_3:34644025-34644044 | None:intergenic | 35.0% |
| ! | TTGCACCATGTTTTCTTGTA+GGG | + | chr1_3:34644035-34644054 | None:intergenic | 35.0% |
| ! | CTGTTTTGTAACCTAGTACA+AGG | + | chr1_3:34644070-34644089 | None:intergenic | 35.0% |
| CTTGTACTAGGTTACAAAAC+AGG | - | chr1_3:34644068-34644087 | Msa0115710:intron | 35.0% | |
| CTGAAAAGTGAATTGTGTTG+TGG | - | chr1_3:34644287-34644306 | Msa0115710:intron | 35.0% | |
| !! | ATCATCAAAGCTTTTTGAGC+TGG | - | chr1_3:34644367-34644386 | Msa0115710:intron | 35.0% |
| ATCGCAAGGCAATTTAATGA+AGG | + | chr1_3:34644408-34644427 | None:intergenic | 35.0% | |
| TTAAATTGCCTTGCGATACA+AGG | - | chr1_3:34644411-34644430 | Msa0115710:intron | 35.0% | |
| ! | TTTTCTTACCTTGTATCGCA+AGG | + | chr1_3:34644422-34644441 | None:intergenic | 35.0% |
| AAAGTAAAGGAAGGTGAATG+AGG | - | chr1_3:34644535-34644554 | Msa0115710:intron | 35.0% | |
| GTCAAGTTTGTGAAAGTTCA+AGG | - | chr1_3:34644560-34644579 | Msa0115710:intron | 35.0% | |
| GTGGTAGTTAATGGTTCAAA+AGG | - | chr1_3:34644644-34644663 | Msa0115710:intron | 35.0% | |
| TTCAAAAGGCAGAGTATAGT+AGG | - | chr1_3:34644658-34644677 | Msa0115710:intron | 35.0% | |
| GTATATTCCCTATTGGCATT+AGG | + | chr1_3:34644726-34644745 | None:intergenic | 35.0% | |
| ! | GAATAATAACTGACTCTGTC+TGG | - | chr1_3:34644787-34644806 | Msa0115710:intron | 35.0% |
| ! | AGCACATGGTTCTGTATAAA+AGG | - | chr1_3:34644851-34644870 | Msa0115710:intron | 35.0% |
| ! | GCACATGGTTCTGTATAAAA+GGG | - | chr1_3:34644852-34644871 | Msa0115710:intron | 35.0% |
| ATATCCATGTGCATCCAAAA+TGG | - | chr1_3:34644887-34644906 | Msa0115710:intron | 35.0% | |
| !! | ACAAATGGGTTACATTCACT+TGG | - | chr1_3:34644943-34644962 | Msa0115710:intron | 35.0% |
| GGATAGGATTACTCAATTGA+GGG | + | chr1_3:34645001-34645020 | None:intergenic | 35.0% | |
| AGGATAGGATTACTCAATTG+AGG | + | chr1_3:34645002-34645021 | None:intergenic | 35.0% | |
| TGCACATGCATAACAAATCA+TGG | + | chr1_3:34645159-34645178 | None:intergenic | 35.0% | |
| ATCAGCATTGCTTTATGAGT+CGG | + | chr1_3:34645480-34645499 | None:intergenic | 35.0% | |
| !! | AATGCACCATTTTGGAAAGT+AGG | + | chr1_3:34645562-34645581 | None:intergenic | 35.0% |
| ! | TTTGGAGAAATGCACCATTT+TGG | + | chr1_3:34645570-34645589 | None:intergenic | 35.0% |
| AAAATGGTGCATTTCTCCAA+AGG | - | chr1_3:34645569-34645588 | Msa0115710:intron | 35.0% | |
| AAATGGTGCATTTCTCCAAA+GGG | - | chr1_3:34645570-34645589 | Msa0115710:intron | 35.0% | |
| !! | GTTTTTAGAGGCTTAGAGAA+AGG | + | chr1_3:34645655-34645674 | None:intergenic | 35.0% |
| ! | TGGTTGCTTTCAGAAAAAGA+TGG | + | chr1_3:34645739-34645758 | None:intergenic | 35.0% |
| TAATAAAGACACTACCCACA+TGG | + | chr1_3:34645812-34645831 | None:intergenic | 35.0% | |
| ! | ATCAGTCCTTTTGTGTTCTA+AGG | + | chr1_3:34645916-34645935 | None:intergenic | 35.0% |
| TAGAGGAAGTTATGTTTGCT+TGG | + | chr1_3:34645943-34645962 | None:intergenic | 35.0% | |
| TTGTTGAAAAGACTAGCACT+AGG | + | chr1_3:34645991-34646010 | None:intergenic | 35.0% | |
| AACTAGCTCATGATGAATTG+AGG | + | chr1_3:34646047-34646066 | None:intergenic | 35.0% | |
| ATTCATCATGAGCTAGTTGT+TGG | - | chr1_3:34646049-34646068 | Msa0115710:intron | 35.0% | |
| !! | TTTACCTTTGCTTTGGTGTT+TGG | + | chr1_3:34646158-34646177 | None:intergenic | 35.0% |
| AAACCCATCTAAGTCTTACA+GGG | + | chr1_3:34646353-34646372 | None:intergenic | 35.0% | |
| !!! | CAGTATTTTAGTGTGAGAGA+AGG | - | chr1_3:34646593-34646612 | Msa0115710:intron | 35.0% |
| AATGCGTAGGATCCAATATA+AGG | - | chr1_3:34646751-34646770 | Msa0115710:CDS | 35.0% | |
| GTTCAGGACATACCTTATAT+TGG | + | chr1_3:34646766-34646785 | None:intergenic | 35.0% | |
| CACCTGCACATAACAAATAT+TGG | + | chr1_3:34646837-34646856 | None:intergenic | 35.0% | |
| !! | CAATATTTGTTATGTGCAGG+TGG | - | chr1_3:34646835-34646854 | Msa0115710:CDS | 35.0% |
| CTTGATATTCTTCAGTGGAA+TGG | + | chr1_3:34646861-34646880 | None:intergenic | 35.0% | |
| ACACACTTGATATTCTTCAG+TGG | + | chr1_3:34646866-34646885 | None:intergenic | 35.0% | |
| !!! | CAGAAGACGATTTTGATTTC+TGG | - | chr1_3:34646939-34646958 | Msa0115710:intron | 35.0% |
| !!! | CGATTTTGATTTCTGGCTTA+TGG | - | chr1_3:34646946-34646965 | Msa0115710:intron | 35.0% |
| AACTTTCAAATATCTCGAGC+AGG | - | chr1_3:34646988-34647007 | Msa0115710:intron | 35.0% | |
| !! | CGAAGATATGCTTTGAAATG+AGG | - | chr1_3:34647120-34647139 | Msa0115710:intron | 35.0% |
| !!! | CTATTTTAACGGGTCAATCT+TGG | + | chr1_3:34647188-34647207 | None:intergenic | 35.0% |
| !!! | CCATGTGCATCTATTTTAAC+GGG | + | chr1_3:34647198-34647217 | None:intergenic | 35.0% |
| ! | TGTTGATGAAAGAGATCACT+CGG | - | chr1_3:34647273-34647292 | Msa0115710:CDS | 35.0% |
| ATATTAACAGTCACTGCTTG+CGG | + | chr1_3:34647320-34647339 | None:intergenic | 35.0% | |
| GAATGAATACTCTGCCAATA+TGG | + | chr1_3:34647348-34647367 | None:intergenic | 35.0% | |
| !!! | CCTATTTTGAGGTCAATGAA+GGG | - | chr1_3:34647386-34647405 | Msa0115710:five_prime_UTR | 35.0% |
| !!! | GGAATGGTTTTAGCTCTTAG+AGG | + | chr1_3:34642277-34642296 | None:intergenic | 40.0% |
| TATAGCAGTAGAAGGTGAAG+AGG | + | chr1_3:34642298-34642317 | None:intergenic | 40.0% | |
| GAAAGGACTATAGCAGTAGA+AGG | + | chr1_3:34642306-34642325 | None:intergenic | 40.0% | |
| AGGTAGAGCAAATTCTAACC+AGG | - | chr1_3:34642592-34642611 | Msa0115710:exon | 40.0% | |
| GACTCTTTGTGAGAGACTAT+CGG | + | chr1_3:34642636-34642655 | None:intergenic | 40.0% | |
| TCACAAAGAGTCCAAGAACA+TGG | - | chr1_3:34642644-34642663 | Msa0115710:CDS | 40.0% | |
| ! | TACCCTTGTAAGACTTGGTT+GGG | - | chr1_3:34642671-34642690 | Msa0115710:CDS | 40.0% |
| AACCCAACCAAGTCTTACAA+GGG | + | chr1_3:34642676-34642695 | None:intergenic | 40.0% | |
| AAACCCAACCAAGTCTTACA+AGG | + | chr1_3:34642677-34642696 | None:intergenic | 40.0% | |
| GGTTGGGTTTCAAAGAGATA+TGG | - | chr1_3:34642687-34642706 | Msa0115710:CDS | 40.0% | |
| AAAGAGGACATTGAGCTTAG+GGG | - | chr1_3:34642807-34642826 | Msa0115710:intron | 40.0% | |
| AGGGGCTCAAATTCTTCAAA+TGG | - | chr1_3:34642825-34642844 | Msa0115710:intron | 40.0% | |
| GGGGCTCAAATTCTTCAAAT+GGG | - | chr1_3:34642826-34642845 | Msa0115710:intron | 40.0% | |
| GCTCAAATTCTTCAAATGGG+TGG | - | chr1_3:34642829-34642848 | Msa0115710:intron | 40.0% | |
| AATTCTTCAAATGGGTGGAG+TGG | - | chr1_3:34642834-34642853 | Msa0115710:intron | 40.0% | |
| ! | CCTTTTCATTGGAGATGAAG+AGG | + | chr1_3:34642960-34642979 | None:intergenic | 40.0% |
| CCTCTTCATCTCCAATGAAA+AGG | - | chr1_3:34642957-34642976 | Msa0115710:CDS | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | + | chr1_3:34642986-34643005 | None:intergenic | 40.0% | |
| AATGTGTAGGATCCGCTATA+AGG | - | chr1_3:34643029-34643048 | Msa0115710:CDS | 40.0% | |
| GTTCACGACTTACCTTATAG+CGG | + | chr1_3:34643044-34643063 | None:intergenic | 40.0% | |
| TGAAGAAGATCAAGTGTGTG+AGG | - | chr1_3:34643149-34643168 | Msa0115710:CDS | 40.0% | |
| !!! | CAGTCGACAATTTTGACTTC+TGG | - | chr1_3:34643221-34643240 | Msa0115710:intron | 40.0% |
| GTTAATGACAAGGACCATAC+TGG | - | chr1_3:34643579-34643598 | Msa0115710:intron | 40.0% | |
| ATGGATACCTTCTACCAGTA+TGG | + | chr1_3:34643596-34643615 | None:intergenic | 40.0% | |
| ! | AAGGTATCCATCCATCCATA+GGG | - | chr1_3:34643605-34643624 | Msa0115710:intron | 40.0% |
| TTAAAATTCAGGCCTCCCTA+TGG | + | chr1_3:34643623-34643642 | None:intergenic | 40.0% | |
| AATGCAAAAGAACTGGCTGT+AGG | + | chr1_3:34643908-34643927 | None:intergenic | 40.0% | |
| TCAACCCCTACAAGAAAACA+TGG | - | chr1_3:34644027-34644046 | Msa0115710:intron | 40.0% | |
| ! | TGCACCATGTTTTCTTGTAG+GGG | + | chr1_3:34644034-34644053 | None:intergenic | 40.0% |
| ! | CTTGCACCATGTTTTCTTGT+AGG | + | chr1_3:34644036-34644055 | None:intergenic | 40.0% |
| ACATGGTGCAAGTCAATTTC+AGG | - | chr1_3:34644044-34644063 | Msa0115710:intron | 40.0% | |
| ! | TCAATTTCAGGCCTTGTACT+AGG | - | chr1_3:34644056-34644075 | Msa0115710:intron | 40.0% |
| GTAGCACGTATATTCCCTAT+TGG | + | chr1_3:34644733-34644752 | None:intergenic | 40.0% | |
| GGATGCACATGGATATTATG+TGG | + | chr1_3:34644883-34644902 | None:intergenic | 40.0% | |
| AAGAACTTCAACTTGCCATG+TGG | - | chr1_3:34645794-34645813 | Msa0115710:intron | 40.0% | |
| AGAACTTCAACTTGCCATGT+GGG | - | chr1_3:34645795-34645814 | Msa0115710:intron | 40.0% | |
| ! | GTGAATCTTGAGCCTTTTGT+GGG | + | chr1_3:34645862-34645881 | None:intergenic | 40.0% |
| ! | AGTGAATCTTGAGCCTTTTG+TGG | + | chr1_3:34645863-34645882 | None:intergenic | 40.0% |
| CTACCTCCTTAGAACACAAA+AGG | - | chr1_3:34645907-34645926 | Msa0115710:intron | 40.0% | |
| !!! | AGTCCTTTTGTGTTCTAAGG+AGG | + | chr1_3:34645913-34645932 | None:intergenic | 40.0% |
| ACACAAAGAGTCCAAGAACA+TGG | - | chr1_3:34646320-34646339 | Msa0115710:intron | 40.0% | |
| TACCCCTGTAAGACTTAGAT+GGG | - | chr1_3:34646347-34646366 | Msa0115710:intron | 40.0% | |
| AACCCATCTAAGTCTTACAG+GGG | + | chr1_3:34646352-34646371 | None:intergenic | 40.0% | |
| GAAACCCATCTAAGTCTTAC+AGG | + | chr1_3:34646354-34646373 | None:intergenic | 40.0% | |
| ATAAAGAGGACGTTGAGCTT+AGG | - | chr1_3:34646527-34646546 | Msa0115710:intron | 40.0% | |
| TAAAGAGGACGTTGAGCTTA+GGG | - | chr1_3:34646528-34646547 | Msa0115710:intron | 40.0% | |
| GCTCAAATTCTTCAAGTAGG+TGG | - | chr1_3:34646551-34646570 | Msa0115710:intron | 40.0% | |
| AATTCTTCAAGTAGGTGGAG+TGG | - | chr1_3:34646556-34646575 | Msa0115710:intron | 40.0% | |
| ! | CCTTTTCATTGGAGATGAAG+AGG | + | chr1_3:34642960-34642979 | None:intergenic | 40.0% |
| CCTCTTCATCTCCAATGAAA+AGG | - | chr1_3:34642957-34642976 | Msa0115710:CDS | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | + | chr1_3:34642986-34643005 | None:intergenic | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | - | chr1_3:34646738-34646757 | Msa0115710:CDS | 40.0% | |
| !! | ATGCTTTGAAATGAGGGACT+TGG | - | chr1_3:34647127-34647146 | Msa0115710:intron | 40.0% |
| CCCGTTAAAATAGATGCACA+TGG | - | chr1_3:34647195-34647214 | Msa0115710:CDS | 40.0% | |
| !!! | GCCTATTTTGAGGTCAATGA+AGG | - | chr1_3:34647385-34647404 | Msa0115710:five_prime_UTR | 40.0% |
| CCCTTCATTGACCTCAAAAT+AGG | + | chr1_3:34647389-34647408 | None:intergenic | 40.0% | |
| CAGTAGAAGGTGAAGAGGAA+TGG | + | chr1_3:34642293-34642312 | None:intergenic | 45.0% | |
| !! | AAGGGTACTCACCATGTTCT+TGG | + | chr1_3:34642658-34642677 | None:intergenic | 45.0% |
| GTGAGTACCCTTGTAAGACT+TGG | - | chr1_3:34642666-34642685 | Msa0115710:CDS | 45.0% | |
| ! | GTACCCTTGTAAGACTTGGT+TGG | - | chr1_3:34642670-34642689 | Msa0115710:CDS | 45.0% |
| TTAGTGTGACAGAAGGGGAA+AGG | - | chr1_3:34642878-34642897 | Msa0115710:intron | 45.0% | |
| TGTTATCTCTCCACCACATC+TGG | - | chr1_3:34642919-34642938 | Msa0115710:CDS | 45.0% | |
| ATGAAGAGGAGACCAGATAG+AGG | + | chr1_3:34642946-34642965 | None:intergenic | 45.0% | |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | + | chr1_3:34642971-34642990 | None:intergenic | 45.0% |
| TCATTAACAGCCACTGCTTG+GGG | + | chr1_3:34643567-34643586 | None:intergenic | 45.0% | |
| GTCATTAACAGCCACTGCTT+GGG | + | chr1_3:34643568-34643587 | None:intergenic | 45.0% | |
| TGTCATTAACAGCCACTGCT+TGG | + | chr1_3:34643569-34643588 | None:intergenic | 45.0% | |
| AGCAGTGGCTGTTAATGACA+AGG | - | chr1_3:34643569-34643588 | Msa0115710:intron | 45.0% | |
| ACAAGGACCATACTGGTAGA+AGG | - | chr1_3:34643586-34643605 | Msa0115710:intron | 45.0% | |
| !! | GAAGGTATCCATCCATCCAT+AGG | - | chr1_3:34643604-34643623 | Msa0115710:intron | 45.0% |
| AAGAACTGGCTGTAGGTGAA+GGG | + | chr1_3:34643901-34643920 | None:intergenic | 45.0% | |
| AAAGAACTGGCTGTAGGTGA+AGG | + | chr1_3:34643902-34643921 | None:intergenic | 45.0% | |
| !! | TCTTGTAGGGGTTGATTTGG+TGG | + | chr1_3:34644022-34644041 | None:intergenic | 45.0% |
| CATTGACACCTGCTTATGCT+TGG | - | chr1_3:34644340-34644359 | Msa0115710:intron | 45.0% | |
| TGATCCATCCAAGCATAAGC+AGG | + | chr1_3:34644351-34644370 | None:intergenic | 45.0% | |
| TGGTGTTCCCTAATGCCAAT+AGG | - | chr1_3:34644715-34644734 | Msa0115710:intron | 45.0% | |
| GGTGTTCCCTAATGCCAATA+GGG | - | chr1_3:34644716-34644735 | Msa0115710:intron | 45.0% | |
| ! | AGCACCATTTTGGATGCACA+TGG | + | chr1_3:34644894-34644913 | None:intergenic | 45.0% |
| ! | TTGCAGCAGTAGCACCATTT+TGG | + | chr1_3:34644904-34644923 | None:intergenic | 45.0% |
| TGAGAGTGGGTAGCAACAAA+TGG | - | chr1_3:34644928-34644947 | Msa0115710:intron | 45.0% | |
| GAGAGTGGGTAGCAACAAAT+GGG | - | chr1_3:34644929-34644948 | Msa0115710:intron | 45.0% | |
| TGAGGGACTGCATCTTGAAA+TGG | + | chr1_3:34644984-34645003 | None:intergenic | 45.0% | |
| TAGTGTATAGGGCCTGTTGT+CGG | + | chr1_3:34645600-34645619 | None:intergenic | 45.0% | |
| GGATGACTCAACCATGATCT+TGG | + | chr1_3:34645841-34645860 | None:intergenic | 45.0% | |
| TGGTTGAGTCATCCCACAAA+AGG | - | chr1_3:34645847-34645866 | Msa0115710:intron | 45.0% | |
| GACTAGCACTAGGTAAAGAG+AGG | + | chr1_3:34645981-34646000 | None:intergenic | 45.0% | |
| !! | CCTTTGCTTTGGTGTTTGGT+TGG | + | chr1_3:34646154-34646173 | None:intergenic | 45.0% |
| CCAACCAAACACCAAAGCAA+AGG | - | chr1_3:34646151-34646170 | Msa0115710:intron | 45.0% | |
| AATTCCAACCAGCAAAAGCG+CGG | - | chr1_3:34646278-34646297 | Msa0115710:intron | 45.0% | |
| GTACCCCTGTAAGACTTAGA+TGG | - | chr1_3:34646346-34646365 | Msa0115710:intron | 45.0% | |
| TGCTCAAGTCAACTAGCAAG+TGG | + | chr1_3:34646443-34646462 | None:intergenic | 45.0% | |
| AAAGAGGACGTTGAGCTTAG+GGG | - | chr1_3:34646529-34646548 | Msa0115710:intron | 45.0% | |
| GGGGCTCAAATTCTTCAAGT+AGG | - | chr1_3:34646548-34646567 | Msa0115710:intron | 45.0% | |
| TTAGTGTGAGAGAAGGAGAG+AGG | - | chr1_3:34646600-34646619 | Msa0115710:intron | 45.0% | |
| TGTTATCTCTCCACCACATC+CGG | - | chr1_3:34642919-34642938 | Msa0115710:CDS | 45.0% | |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | + | chr1_3:34642971-34642990 | None:intergenic | 45.0% |
| !! | CTTTGAAATGAGGGACTTGG+TGG | - | chr1_3:34647130-34647149 | Msa0115710:intron | 45.0% |
| CATTCATCGACAGAGAAGAG+AGG | - | chr1_3:34647363-34647382 | Msa0115710:five_prime_UTR | 45.0% | |
| ! | GAGAAGAGAGGCCTATTTTG+AGG | - | chr1_3:34647375-34647394 | Msa0115710:five_prime_UTR | 45.0% |
| !!! | AATTTTATTAAATATTTGAA+TGG | + | chr1_3:34643766-34643785 | None:intergenic | 5.0% |
| !! | TAGATTTAATTAATTAATAA+TGG | - | chr1_3:34644153-34644172 | Msa0115710:intron | 5.0% |
| AGATAGAGGACCAGATGTGG+TGG | + | chr1_3:34642932-34642951 | None:intergenic | 50.0% | |
| ACCACATCTGGTCCTCTATC+TGG | - | chr1_3:34642931-34642950 | Msa0115710:CDS | 50.0% | |
| ACCAGATAGAGGACCAGATG+TGG | + | chr1_3:34642935-34642954 | None:intergenic | 50.0% | |
| !! | GATGAGGTGTTTTGTCCACG+AGG | + | chr1_3:34643441-34643460 | None:intergenic | 50.0% |
| TGCTTTGTAACCCCAAGCAG+TGG | - | chr1_3:34643554-34643573 | Msa0115710:intron | 50.0% | |
| GTATCCATCCATCCATAGGG+AGG | - | chr1_3:34643608-34643627 | Msa0115710:intron | 50.0% | |
| AATTCAGGCCTCCCTATGGA+TGG | + | chr1_3:34643619-34643638 | None:intergenic | 50.0% | |
| GACACCTGCTTATGCTTGGA+TGG | - | chr1_3:34644344-34644363 | Msa0115710:intron | 50.0% | |
| CCAAACACATGTGACTGACG+CGG | - | chr1_3:34644681-34644700 | Msa0115710:intron | 50.0% | |
| !! | CTGACGCGGTTACTTGCTAT+TGG | - | chr1_3:34644695-34644714 | Msa0115710:intron | 50.0% |
| ACTGCTGCAACTTGTGAGAG+TGG | - | chr1_3:34644914-34644933 | Msa0115710:intron | 50.0% | |
| CTGCTGCAACTTGTGAGAGT+GGG | - | chr1_3:34644915-34644934 | Msa0115710:intron | 50.0% | |
| GGTGCATTTCTCCAAAGGGT+TGG | - | chr1_3:34645574-34645593 | Msa0115710:intron | 50.0% | |
| ! | GGAATGCTCTGAGCTACTAG+AGG | + | chr1_3:34645960-34645979 | None:intergenic | 50.0% |
| !! | AGGGGTACTCACCATGTTCT+TGG | + | chr1_3:34646334-34646353 | None:intergenic | 50.0% |
| ATGAAGAGGAGACCAGCTAG+AGG | + | chr1_3:34646668-34646687 | None:intergenic | 50.0% | |
| !! | CTAACCAGGAAAAGCGCTGC+AGG | - | chr1_3:34642606-34642625 | Msa0115710:CDS | 55.0% |
| !! | CTTTGAAACGAGGGACCTCG+TGG | - | chr1_3:34643423-34643442 | Msa0115710:intron | 55.0% |
| CCGCGTCAGTCACATGTGTT+TGG | + | chr1_3:34644684-34644703 | None:intergenic | 55.0% | |
| ! | CCTTCCTGCAGCGCTTTTCC+TGG | + | chr1_3:34642613-34642632 | None:intergenic | 60.0% |
| !! | CCAGGAAAAGCGCTGCAGGA+AGG | - | chr1_3:34642610-34642629 | Msa0115710:CDS | 60.0% |
| CAGGCCTCCCTATGGATGGA+TGG | + | chr1_3:34643615-34643634 | None:intergenic | 60.0% | |
| CCTGTTGTCGGCCAACCCTT+TGG | + | chr1_3:34645588-34645607 | None:intergenic | 60.0% | |
| !! | CCAAAGGGTTGGCCGACAAC+AGG | - | chr1_3:34645585-34645604 | Msa0115710:intron | 60.0% |
| ! | TCTGCCGCGCTTTTGCTGGT+TGG | + | chr1_3:34646285-34646304 | None:intergenic | 60.0% |
| ! | CTGTTCTGCCGCGCTTTTGC+TGG | + | chr1_3:34646289-34646308 | None:intergenic | 60.0% |
| AGCTAGAGGACCGGATGTGG+TGG | + | chr1_3:34646654-34646673 | None:intergenic | 60.0% | |
| ACCACATCCGGTCCTCTAGC+TGG | - | chr1_3:34646653-34646672 | Msa0115710:CDS | 60.0% | |
| ACCAGCTAGAGGACCGGATG+TGG | + | chr1_3:34646657-34646676 | None:intergenic | 60.0% | |
| GAGGAGACCAGCTAGAGGAC+CGG | + | chr1_3:34646663-34646682 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 34642208 | 34647459 | 34642208 | ID=Msa0115710;Name=Msa0115710 |
| chr1_3 | mRNA | 34642208 | 34647459 | 34642208 | ID=Msa0115710-mRNA-1;Parent=Msa0115710;Name=Msa0115710-mRNA-1;_AED=0.23;_eAED=0.23;_QI=152|0.57|0.62|1|0.85|0.75|8|358|404 |
| chr1_3 | exon | 34642208 | 34642451 | 34642208 | ID=Msa0115710-mRNA-1:exon:10974;Parent=Msa0115710-mRNA-1 |
| chr1_3 | exon | 34642490 | 34642813 | 34642490 | ID=Msa0115710-mRNA-1:exon:10973;Parent=Msa0115710-mRNA-1 |
| chr1_3 | exon | 34642895 | 34643169 | 34642895 | ID=Msa0115710-mRNA-1:exon:10972;Parent=Msa0115710-mRNA-1 |
| chr1_3 | exon | 34643314 | 34643414 | 34643314 | ID=Msa0115710-mRNA-1:exon:10971;Parent=Msa0115710-mRNA-1 |
| chr1_3 | exon | 34646407 | 34646531 | 34646407 | ID=Msa0115710-mRNA-1:exon:10970;Parent=Msa0115710-mRNA-1 |
| chr1_3 | exon | 34646617 | 34646891 | 34646617 | ID=Msa0115710-mRNA-1:exon:10969;Parent=Msa0115710-mRNA-1 |
| chr1_3 | exon | 34646990 | 34647073 | 34646990 | ID=Msa0115710-mRNA-1:exon:10968;Parent=Msa0115710-mRNA-1 |
| chr1_3 | exon | 34647163 | 34647459 | 34647163 | ID=Msa0115710-mRNA-1:exon:10967;Parent=Msa0115710-mRNA-1 |
| chr1_3 | five_prime_UTR | 34647308 | 34647459 | 34647308 | ID=Msa0115710-mRNA-1:five_prime_utr;Parent=Msa0115710-mRNA-1 |
| chr1_3 | CDS | 34647163 | 34647307 | 34647163 | ID=Msa0115710-mRNA-1:cds;Parent=Msa0115710-mRNA-1 |
| chr1_3 | CDS | 34646990 | 34647073 | 34646990 | ID=Msa0115710-mRNA-1:cds;Parent=Msa0115710-mRNA-1 |
| chr1_3 | CDS | 34646617 | 34646891 | 34646617 | ID=Msa0115710-mRNA-1:cds;Parent=Msa0115710-mRNA-1 |
| chr1_3 | CDS | 34646407 | 34646531 | 34646407 | ID=Msa0115710-mRNA-1:cds;Parent=Msa0115710-mRNA-1 |
| chr1_3 | CDS | 34643314 | 34643414 | 34643314 | ID=Msa0115710-mRNA-1:cds;Parent=Msa0115710-mRNA-1 |
| chr1_3 | CDS | 34642895 | 34643169 | 34642895 | ID=Msa0115710-mRNA-1:cds;Parent=Msa0115710-mRNA-1 |
| chr1_3 | CDS | 34642604 | 34642813 | 34642604 | ID=Msa0115710-mRNA-1:cds;Parent=Msa0115710-mRNA-1 |
| chr1_3 | three_prime_UTR | 34642490 | 34642603 | 34642490 | ID=Msa0115710-mRNA-1:three_prime_utr;Parent=Msa0115710-mRNA-1 |
| chr1_3 | three_prime_UTR | 34642208 | 34642451 | 34642208 | ID=Msa0115710-mRNA-1:three_prime_utr;Parent=Msa0115710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
