AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1325410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325410 MtrunA17_Chr8g0360031 94.915 177 8 1 1 177 1 176 6.16e-121 338
Msa1325410 MtrunA17_Chr2g0317731 65.000 180 53 4 1 177 1 173 3.14e-76 225
Msa1325410 MtrunA17_Chr3g0125821 59.310 145 58 1 33 177 30 173 1.63e-61 188
Msa1325410 MtrunA17_Chr4g0044731 48.958 96 49 0 82 177 73 168 1.62e-34 119
Msa1325410 MtrunA17_Chr2g0317721 38.583 127 76 1 49 175 18 142 2.37e-32 113
Msa1325410 MtrunA17_Chr2g0317701 48.113 106 54 1 70 174 42 147 5.51e-28 102
Msa1325410 MtrunA17_Chr2g0317711 37.209 129 78 2 49 177 18 143 9.23e-25 93.6
Msa1325410 MtrunA17_Chr1g0201781 36.082 97 62 0 78 174 66 162 1.09e-21 86.7
Msa1325410 MtrunA17_Chr1g0211871 35.780 109 62 2 74 177 70 175 6.98e-21 84.7
Msa1325410 MtrunA17_Chr5g0404831 37.069 116 63 4 65 177 7 115 1.62e-16 71.6
Msa1325410 MtrunA17_Chr2g0317691 45.312 64 35 0 114 177 3 66 3.21e-16 70.1
Msa1325410 MtrunA17_Chr7g0216481 34.343 99 60 4 80 175 35 131 1.26e-15 69.7
Msa1325410 MtrunA17_Chr5g0438731 36.735 98 61 1 59 155 46 143 8.85e-14 68.2
Msa1325410 MtrunA17_Chr5g0438731 28.571 133 88 4 33 161 148 277 1.33e-12 65.1
Msa1325410 MtrunA17_Chr4g0052481 41.667 72 39 2 94 163 85 155 1.47e-13 65.1
Msa1325410 MtrunA17_Chr1g0155721 36.364 88 54 2 88 175 26 111 1.96e-13 63.5
Msa1325410 MtrunA17_Chr3g0142051 35.632 87 54 2 89 175 27 111 7.51e-13 62.0
Msa1325410 MtrunA17_Chr2g0287471 36.082 97 62 0 59 155 15 111 2.13e-12 63.9
Msa1325410 MtrunA17_Chr8g0393201 38.272 81 48 2 93 173 252 330 2.85e-12 63.5
Msa1325410 MtrunA17_Chr2g0280411 34.483 87 55 2 91 177 32 116 9.64e-12 59.3
Msa1325410 MtrunA17_Chr7g0258871 33.766 77 50 1 88 163 93 169 9.72e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325410 AT3G15360.1 65.354 127 41 2 53 177 66 191 4.36e-59 183
Msa1325410 AT1G03680.1 56.081 148 60 2 30 177 37 179 1.54e-56 176
Msa1325410 AT4G03520.1 55.405 148 65 1 30 177 39 185 6.51e-56 174
Msa1325410 AT2G15570.2 48.515 101 52 0 77 177 72 172 2.10e-34 119
Msa1325410 AT2G15570.1 48.515 101 52 0 77 177 71 171 2.23e-34 119
Msa1325410 AT4G03520.2 70.423 71 21 0 107 177 1 71 3.01e-32 110
Msa1325410 AT1G76760.1 38.144 97 60 0 81 177 72 168 2.30e-22 88.6
Msa1325410 AT1G43560.1 38.144 97 60 0 81 177 67 163 2.09e-21 86.3
Msa1325410 AT1G50320.1 32.117 137 85 2 43 177 46 176 3.10e-19 80.9
Msa1325410 AT3G51030.1 43.333 90 49 2 88 177 26 113 1.09e-16 72.4
Msa1325410 AT1G19730.1 37.500 88 54 1 88 175 26 112 6.01e-16 70.5
Msa1325410 AT4G12170.1 37.634 93 58 0 74 166 51 143 1.82e-15 70.1
Msa1325410 AT1G52990.1 33.043 115 64 3 75 177 200 313 3.76e-15 72.0
Msa1325410 AT5G42980.1 34.091 88 56 2 88 175 25 110 1.70e-14 66.6
Msa1325410 AT5G39950.1 35.000 100 60 3 80 176 34 131 1.89e-14 67.0
Msa1325410 AT2G35010.2 34.483 116 64 4 50 163 75 180 2.91e-14 67.8
Msa1325410 AT2G35010.1 34.483 116 64 4 50 163 75 180 2.91e-14 67.8
Msa1325410 AT3G54960.2 33.981 103 67 1 73 175 100 201 1.28e-13 68.2
Msa1325410 AT3G54960.1 33.981 103 67 1 73 175 100 201 6.19e-13 66.2
Msa1325410 AT2G32920.1 38.462 78 48 0 74 151 32 109 7.58e-13 65.9
Msa1325410 AT2G32920.1 36.000 75 48 0 77 151 167 241 3.01e-12 64.3
Msa1325410 AT1G45145.1 33.333 87 51 2 77 163 20 99 7.98e-13 62.4
Msa1325410 AT1G04980.1 37.179 78 49 0 74 151 34 111 1.52e-12 65.1
Msa1325410 AT1G04980.1 34.667 75 49 0 77 151 172 246 2.50e-12 64.7
Msa1325410 AT1G31020.1 31.193 109 69 3 59 162 37 144 8.02e-12 60.8
Msa1325410 AT3G53220.1 41.333 75 41 3 89 163 42 113 4.21e-11 58.2
Msa1325410 AT5G06690.1 32.432 74 49 1 91 163 119 192 9.47e-11 58.5

Find 66 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGAAATTTAACATGTTC+TGG 0.224916 8_4:-37493796 None:intergenic
ATGGGCCTGGGCTTGGGGTT+GGG 0.246250 8_4:-37490841 None:intergenic
GAGAAAATGGGCCTGGGCTT+GGG 0.247517 8_4:-37490847 None:intergenic
TTGCTAGTTCATCAATTATA+GGG 0.270606 8_4:-37493371 None:intergenic
TGGGCTTGGGGTTGGGTCTG+AGG 0.271631 8_4:-37490834 None:intergenic
AGTGGAGTGAGTGGAGAAAA+TGG 0.296510 8_4:-37490860 None:intergenic
ATTGCTAGTTCATCAATTAT+AGG 0.309012 8_4:-37493372 None:intergenic
GGAGAAAATGGGCCTGGGCT+TGG 0.312075 8_4:-37490848 None:intergenic
AATGGGCCTGGGCTTGGGGT+TGG 0.342761 8_4:-37490842 None:intergenic
CGAATCTGAATCTCCCGTTT+TGG 0.351676 8_4:+37493305 Msa1325410:CDS
CTGCTATCACCGATGCAAAT+TGG 0.356246 8_4:+37493268 Msa1325410:CDS
GAACTAGCAATACAATATAC+TGG 0.398934 8_4:+37493384 Msa1325410:CDS
TTAATTTAGATATTAGTGTT+TGG 0.411138 8_4:-37490644 None:intergenic
GTGAGTGGAGAAAATGGGCC+TGG 0.425797 8_4:-37490854 None:intergenic
AGAAAATGGGCCTGGGCTTG+GGG 0.435068 8_4:-37490846 None:intergenic
ACGCGTAGTGTGTGAGGCTC+AGG 0.442187 8_4:+37490909 Msa1325410:CDS
CAATTTGCATCGGTGATAGC+AGG 0.443387 8_4:-37493267 None:intergenic
GCCCAGAATTCAACCAAAAC+GGG 0.446890 8_4:-37493318 None:intergenic
TGGGTCTGAGGCCCACGTAA+CGG 0.458501 8_4:-37490822 None:intergenic
GCTTGATGTCAGTGTTGACT+TGG 0.459894 8_4:-37493538 None:intergenic
AGCCCAGAATTCAACCAAAA+CGG 0.482872 8_4:-37493319 None:intergenic
TCAGACCCAACCCCAAGCCC+AGG 0.499056 8_4:+37490836 Msa1325410:CDS
TATAGGGGTGATCATTCTGC+AGG 0.501022 8_4:-37493355 None:intergenic
TGGTTGAATTCTGGGCTCCA+TGG 0.502481 8_4:+37493325 Msa1325410:CDS
CAGGATACCGCTGTTGATGA+TGG 0.503313 8_4:+37490928 Msa1325410:CDS
CACTTTCTTTCAGTTTCCGA+TGG 0.505061 8_4:+37490711 Msa1325410:exon
GGTCTGAGGCCCACGTAACG+GGG 0.514866 8_4:-37490820 None:intergenic
GGAAGAAGTGCGAGGGATGA+CGG 0.516269 8_4:-37490755 None:intergenic
TAGATATTAGTGTTTGGAGA+AGG 0.518741 8_4:-37490638 None:intergenic
CTTTGAAGATCATAACTGTC+GGG 0.521915 8_4:-37493479 None:intergenic
GTGGAGTGAGTGGAGAAAAT+GGG 0.524624 8_4:-37490859 None:intergenic
ATTTATGGAAACATGATACA+TGG 0.542457 8_4:-37493656 None:intergenic
CCTTCGACTGCTACCCGGTA+CGG 0.545287 8_4:+37493444 Msa1325410:CDS
TGAGTGGAGAAAATGGGCCT+GGG 0.549222 8_4:-37490853 None:intergenic
ACAGTTATGATCTTCAAAGA+TGG 0.556904 8_4:+37493483 Msa1325410:CDS
GAGTGCAACGACGGGAGTGA+TGG 0.559427 8_4:-37490779 None:intergenic
GGATACTTCGAATTCCGTAC+CGG 0.562816 8_4:-37493458 None:intergenic
TGCAACGACGGGAGTGATGG+CGG 0.564235 8_4:-37490776 None:intergenic
GGAAACATGATACATGGACT+TGG 0.566270 8_4:-37493650 None:intergenic
AAGTGATTGCCAATTTGCAT+CGG 0.567079 8_4:-37493277 None:intergenic
AGTGCGAGGGATGACGGCGA+TGG 0.570677 8_4:-37490749 None:intergenic
GAACTCCGGAGTGCAACGAC+GGG 0.574052 8_4:-37490787 None:intergenic
CCGTACCGGGTAGCAGTCGA+AGG 0.576194 8_4:-37493444 None:intergenic
CTTGATGTCAGTGTTGACTT+GGG 0.577617 8_4:-37493537 None:intergenic
GATTCGATGATGGTGGCCAT+CGG 0.579134 8_4:-37490727 None:intergenic
TCTTGAAGCAGTGGAGTGAG+TGG 0.581599 8_4:-37490869 None:intergenic
TCTTTGAAGATCATAACTGT+CGG 0.587407 8_4:-37493480 None:intergenic
GATACTTCGAATTCCGTACC+GGG 0.589642 8_4:-37493457 None:intergenic
CAATTCACGCGTAGTGTGTG+AGG 0.589920 8_4:+37490903 Msa1325410:CDS
TGCTAGTTCATCAATTATAG+GGG 0.592259 8_4:-37493370 None:intergenic
GACGGCGATGGATTCGATGA+TGG 0.594939 8_4:-37490737 None:intergenic
GCTAGCAATTCTTGAAGCAG+TGG 0.597540 8_4:-37490878 None:intergenic
GAATTCTGGGCTCCATGGTG+TGG 0.602377 8_4:+37493330 Msa1325410:CDS
AGAACTCCGGAGTGCAACGA+CGG 0.606543 8_4:-37490788 None:intergenic
AGAGTCCTTCGACTGCTACC+CGG 0.610576 8_4:+37493439 Msa1325410:CDS
TCACTCCCGTCGTTGCACTC+CGG 0.627976 8_4:+37490782 Msa1325410:CDS
AGCAGTCGAAGGACTCTCAT+CGG 0.630999 8_4:-37493433 None:intergenic
CACACACTACGCGTGAATTG+CGG 0.640205 8_4:-37490900 None:intergenic
GTGTGTGGATGAAGATGATG+TGG 0.646215 8_4:-37490606 None:intergenic
TGATGGCGGAAGAAGTGCGA+GGG 0.650623 8_4:-37490762 None:intergenic
ATTCTGCAGGGACCACACCA+TGG 0.653948 8_4:-37493342 None:intergenic
GTCTGAGGCCCACGTAACGG+GGG 0.660386 8_4:-37490819 None:intergenic
ATAGGGGTGATCATTCTGCA+GGG 0.696317 8_4:-37493354 None:intergenic
GGCGATGGATTCGATGATGG+TGG 0.698121 8_4:-37490734 None:intergenic
GTGATGGCGGAAGAAGTGCG+AGG 0.721226 8_4:-37490763 None:intergenic
AAACTGACCATCATCAACAG+CGG 0.762514 8_4:-37490935 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCATTTCTATAATTTTTA+AGG - chr8_4:37491018-37491037 None:intergenic 10.0%
!! TTAATTTAGATATTAGTGTT+TGG - chr8_4:37490647-37490666 None:intergenic 15.0%
!!! AAATTGGTTTTAAAGTTAAA+AGG - chr8_4:37492402-37492421 None:intergenic 15.0%
!!! TTTTAACTTTAAAACCAATT+TGG + chr8_4:37492401-37492420 Msa1325410:intron 15.0%
!!! TTTAACTTTAAAACCAATTT+GGG + chr8_4:37492402-37492421 Msa1325410:intron 15.0%
!! ACATTATATTGAAATATGAT+TGG + chr8_4:37492982-37493001 Msa1325410:intron 15.0%
!! CATTATATTGAAATATGATT+GGG + chr8_4:37492983-37493002 Msa1325410:intron 15.0%
!!! ATTTTAAGTAAGCAAATTTA+TGG - chr8_4:37493674-37493693 None:intergenic 15.0%
!! TAAAATGAAGTAGTGATTAT+TGG + chr8_4:37491918-37491937 Msa1325410:intron 20.0%
!! ATAATGGTTGAATTATATGA+TGG - chr8_4:37492349-37492368 None:intergenic 20.0%
!! TAGAAATTCATCTTATAGAA+AGG + chr8_4:37492490-37492509 Msa1325410:intron 20.0%
!! CATAGAAAAATTCTTATAAG+TGG + chr8_4:37493560-37493579 Msa1325410:exon 20.0%
!!! AAAAATAGCTCTTTATTTCT+AGG - chr8_4:37493609-37493628 None:intergenic 20.0%
! TTAAGGTAGATGATATTCTT+TGG - chr8_4:37491001-37491020 None:intergenic 25.0%
!! ATTGATCAAGGAAAGATTTT+GGG - chr8_4:37491177-37491196 None:intergenic 25.0%
!! AATTGATCAAGGAAAGATTT+TGG - chr8_4:37491178-37491197 None:intergenic 25.0%
! AAATCTTTCCTTGATCAATT+TGG + chr8_4:37491178-37491197 Msa1325410:intron 25.0%
! AATTAAGAGGTCTAAATGTA+AGG - chr8_4:37491446-37491465 None:intergenic 25.0%
! CTATTGCAATGAAAATTAAG+AGG - chr8_4:37491459-37491478 None:intergenic 25.0%
!!! TTAGAGGCATTTTAATTATC+TGG + chr8_4:37491751-37491770 Msa1325410:intron 25.0%
!!! TAGAGGCATTTTAATTATCT+GGG + chr8_4:37491752-37491771 Msa1325410:intron 25.0%
! AAATGACTTTAAATTCTCTC+AGG - chr8_4:37491788-37491807 None:intergenic 25.0%
! AAAAGTTTCTGTCAACAAAA+TGG - chr8_4:37491849-37491868 None:intergenic 25.0%
! TTACACAACATTGATCAATT+TGG - chr8_4:37492049-37492068 None:intergenic 25.0%
!!! ATATTGATAATGCTAGAGAT+TGG + chr8_4:37492085-37492104 Msa1325410:intron 25.0%
! TGATGCAATTATTGAAGATA+TGG + chr8_4:37492110-37492129 Msa1325410:intron 25.0%
! CGAGAAAGTTAAAAGTAAAA+GGG - chr8_4:37492199-37492218 None:intergenic 25.0%
! ACGAGAAAGTTAAAAGTAAA+AGG - chr8_4:37492200-37492219 None:intergenic 25.0%
!! TGATCACAGATTAGTTATAA+TGG - chr8_4:37492365-37492384 None:intergenic 25.0%
!! TTTCTAGTCAATCATTAGAT+TGG - chr8_4:37492476-37492495 None:intergenic 25.0%
! ATCTTATAGAAAGGATTTGT+TGG + chr8_4:37492499-37492518 Msa1325410:intron 25.0%
! ATACATTGATGTATTGCATT+TGG + chr8_4:37492595-37492614 Msa1325410:intron 25.0%
! TACATTGATGTATTGCATTT+GGG + chr8_4:37492596-37492615 Msa1325410:intron 25.0%
! ATCCATAATTTCTGTGTATT+TGG + chr8_4:37492723-37492742 Msa1325410:intron 25.0%
! AACCAAATACACAGAAATTA+TGG - chr8_4:37492728-37492747 None:intergenic 25.0%
!!! TATATATATGGAAAGTGTTC+TGG - chr8_4:37492919-37492938 None:intergenic 25.0%
! ACTACACAAGTGTATATATA+TGG - chr8_4:37492931-37492950 None:intergenic 25.0%
! ATTTCAACATTGTTCATGAT+TGG + chr8_4:37493122-37493141 Msa1325410:intron 25.0%
! TTGCTAGTTCATCAATTATA+GGG - chr8_4:37493374-37493393 None:intergenic 25.0%
! ATTGCTAGTTCATCAATTAT+AGG - chr8_4:37493375-37493394 None:intergenic 25.0%
! ATTTATGGAAACATGATACA+TGG - chr8_4:37493659-37493678 None:intergenic 25.0%
TAGATATTAGTGTTTGGAGA+AGG - chr8_4:37490641-37490660 None:intergenic 30.0%
AAGTGATTCAAACTAACAGA+AGG - chr8_4:37491205-37491224 None:intergenic 30.0%
ACTTAACAAAGTTTGCATGT+TGG + chr8_4:37491221-37491240 Msa1325410:intron 30.0%
! AGGAAACAACTTCATTGATT+TGG - chr8_4:37491426-37491445 None:intergenic 30.0%
TTCAAGGAATTGCAAAGTAA+AGG - chr8_4:37491541-37491560 None:intergenic 30.0%
AAGCATGATGAGATACTAAT+TGG - chr8_4:37491693-37491712 None:intergenic 30.0%
ACATCAAAAGGGTGAAAATA+TGG + chr8_4:37491820-37491839 Msa1325410:intron 30.0%
AGTAGTGATTATTGGAAGAA+AGG + chr8_4:37491926-37491945 Msa1325410:intron 30.0%
TTATTGAAGATATGGTTAGC+TGG + chr8_4:37492118-37492137 Msa1325410:intron 30.0%
TGTTCACAGTTATCAATACA+AGG + chr8_4:37492229-37492248 Msa1325410:intron 30.0%
!! CTTTTTCACCATTTTATCCA+TGG + chr8_4:37492262-37492281 Msa1325410:intron 30.0%
! ACCATTTTATCCATGGATAA+TGG + chr8_4:37492269-37492288 Msa1325410:intron 30.0%
TCCATTATCCATGGATAAAA+TGG - chr8_4:37492273-37492292 None:intergenic 30.0%
! CGATCTTGATAACTTAAACA+TGG + chr8_4:37492563-37492582 Msa1325410:intron 30.0%
TGATGAAGTTTCAATAGCAT+TGG + chr8_4:37492645-37492664 Msa1325410:intron 30.0%
ACACAGAAATTATGGATCAT+GGG - chr8_4:37492720-37492739 None:intergenic 30.0%
TACACAGAAATTATGGATCA+TGG - chr8_4:37492721-37492740 None:intergenic 30.0%
AAGTTCATTCAATCAATGCA+AGG - chr8_4:37492753-37492772 None:intergenic 30.0%
CAATAACAATACAGTGACAT+TGG + chr8_4:37492788-37492807 Msa1325410:intron 30.0%
TACCTCAAAAATCAATACAC+TGG - chr8_4:37492859-37492878 None:intergenic 30.0%
! ATTGTCCAATCATCTTTTTG+GGG - chr8_4:37493024-37493043 None:intergenic 30.0%
! GATTGTCCAATCATCTTTTT+GGG - chr8_4:37493025-37493044 None:intergenic 30.0%
! AGATTGTCCAATCATCTTTT+TGG - chr8_4:37493026-37493045 None:intergenic 30.0%
TCACTGATAGATGTTAAACT+AGG + chr8_4:37493049-37493068 Msa1325410:intron 30.0%
AATTGCACAAACAAGCAAAT+AGG - chr8_4:37493080-37493099 None:intergenic 30.0%
GTCTGCAGAAAATTATCATT+TGG - chr8_4:37493169-37493188 None:intergenic 30.0%
TGCTAGTTCATCAATTATAG+GGG - chr8_4:37493373-37493392 None:intergenic 30.0%
GAACTAGCAATACAATATAC+TGG + chr8_4:37493384-37493403 Msa1325410:CDS 30.0%
! TCTTTGAAGATCATAACTGT+CGG - chr8_4:37493483-37493502 None:intergenic 30.0%
ACAGTTATGATCTTCAAAGA+TGG + chr8_4:37493483-37493502 Msa1325410:CDS 30.0%
GAGAAAAAAGACACAGTTAT+TGG + chr8_4:37493507-37493526 Msa1325410:CDS 30.0%
GCATCTGATAAAAACTATAC+AGG - chr8_4:37493710-37493729 None:intergenic 30.0%
AAACATGCAAATGTCACAGA+AGG + chr8_4:37491251-37491270 Msa1325410:intron 35.0%
TCCACACAAAAGTAAAGTTG+TGG + chr8_4:37491277-37491296 Msa1325410:intron 35.0%
!! TCCACAACTTTACTTTTGTG+TGG - chr8_4:37491281-37491300 None:intergenic 35.0%
ACACAAAAGTAAAGTTGTGG+AGG + chr8_4:37491280-37491299 Msa1325410:intron 35.0%
! TGAACACTGATGTTTAGAGT+TGG + chr8_4:37491311-37491330 Msa1325410:intron 35.0%
! GAACACTGATGTTTAGAGTT+GGG + chr8_4:37491312-37491331 Msa1325410:intron 35.0%
! AACACTGATGTTTAGAGTTG+GGG + chr8_4:37491313-37491332 Msa1325410:intron 35.0%
!! CAATTTGTATCAGTGGATTG+TGG + chr8_4:37491339-37491358 Msa1325410:intron 35.0%
TCATTGCAATAGCTTGACAA+CGG + chr8_4:37491467-37491486 Msa1325410:intron 35.0%
AGGAATTGCAAAGTAAAGGT+GGG - chr8_4:37491537-37491556 None:intergenic 35.0%
AAGGAATTGCAAAGTAAAGG+TGG - chr8_4:37491538-37491557 None:intergenic 35.0%
! TCTCTAGATCTTTTTCCTAG+AGG - chr8_4:37491609-37491628 None:intergenic 35.0%
!!! CGTTCTTAGTTTGTTTTGCA+AGG - chr8_4:37491640-37491659 None:intergenic 35.0%
TGACTAATGACTGACTACTA+TGG - chr8_4:37491720-37491739 None:intergenic 35.0%
GTCAGTCATTAGTCAAGTTA+CGG + chr8_4:37491725-37491744 Msa1325410:intron 35.0%
!! AGTCAAGTTACGGTTTTTAG+AGG + chr8_4:37491735-37491754 Msa1325410:intron 35.0%
TCCTAACTCAACACATCAAA+AGG + chr8_4:37491808-37491827 Msa1325410:intron 35.0%
CCTAACTCAACACATCAAAA+GGG + chr8_4:37491809-37491828 Msa1325410:intron 35.0%
TTGAAGAAGAGAGAAACTGA+TGG + chr8_4:37491877-37491896 Msa1325410:intron 35.0%
TGAAGAAGAGAGAAACTGAT+GGG + chr8_4:37491878-37491897 Msa1325410:intron 35.0%
GATCAATGTTGTGTAAAGCA+AGG + chr8_4:37492053-37492072 Msa1325410:intron 35.0%
! GATATGGTTAGCTGGTTATT+AGG + chr8_4:37492126-37492145 Msa1325410:intron 35.0%
GAGTATTAGTTAGTAGCTAG+TGG + chr8_4:37492148-37492167 Msa1325410:intron 35.0%
GTACATCAAAGCCTATCTAT+AGG - chr8_4:37492177-37492196 None:intergenic 35.0%
! ACAATTGCTGTTGAGAAACA+TGG - chr8_4:37492298-37492317 None:intergenic 35.0%
TAAAACCAATTTGGGAGAGT+AGG + chr8_4:37492410-37492429 Msa1325410:intron 35.0%
TCAGTCAGCATAGTAAGATA+TGG - chr8_4:37492833-37492852 None:intergenic 35.0%
!!! GTCCAGTGTATTGATTTTTG+AGG + chr8_4:37492854-37492873 Msa1325410:intron 35.0%
ACTAAGCACAAAACTCAATG+CGG - chr8_4:37492886-37492905 None:intergenic 35.0%
!! GAGTTTTGTGCTTAGTTAGA+AGG + chr8_4:37492890-37492909 Msa1325410:intron 35.0%
!! ATCTTTTTGGGGGTTACAAA+CGG - chr8_4:37493013-37493032 None:intergenic 35.0%
! TTGTCCAATCATCTTTTTGG+GGG - chr8_4:37493023-37493042 None:intergenic 35.0%
! TTGGTAGTATCAAACTCAGA+TGG + chr8_4:37493141-37493160 Msa1325410:intron 35.0%
AAGTGATTGCCAATTTGCAT+CGG - chr8_4:37493280-37493299 None:intergenic 35.0%
! CTTTGAAGATCATAACTGTC+GGG - chr8_4:37493482-37493501 None:intergenic 35.0%
AGAAGGAACAAAAACGTGTG+TGG - chr8_4:37490624-37490643 None:intergenic 40.0%
CACTTTCTTTCAGTTTCCGA+TGG + chr8_4:37490711-37490730 Msa1325410:exon 40.0%
AAACTGACCATCATCAACAG+CGG - chr8_4:37490938-37490957 None:intergenic 40.0%
CAGAAGGACCAAATTGATCA+AGG - chr8_4:37491189-37491208 None:intergenic 40.0%
! ACACTGATGTTTAGAGTTGG+GGG + chr8_4:37491314-37491333 Msa1325410:intron 40.0%
AATTGCAAAGTAAAGGTGGG+TGG - chr8_4:37491534-37491553 None:intergenic 40.0%
ACACTTACTGAGATTCTGGA+GGG - chr8_4:37491565-37491584 None:intergenic 40.0%
CTAGAGGAATTACGAAGTTC+TGG - chr8_4:37491593-37491612 None:intergenic 40.0%
CAGAACTTCGTAATTCCTCT+AGG + chr8_4:37491591-37491610 Msa1325410:intron 40.0%
! CCCTTTTGATGTGTTGAGTT+AGG - chr8_4:37491812-37491831 None:intergenic 40.0%
AACATGGCATCCATTATCCA+TGG - chr8_4:37492282-37492301 None:intergenic 40.0%
!! TCTTTTTGGGGGTTACAAAC+GGG - chr8_4:37493012-37493031 None:intergenic 40.0%
GTAACCCCCAAAAAGATGAT+TGG + chr8_4:37493016-37493035 Msa1325410:intron 40.0%
!!! TCCCGTTTTGGTTGAATTCT+GGG + chr8_4:37493317-37493336 Msa1325410:CDS 40.0%
AGCCCAGAATTCAACCAAAA+CGG - chr8_4:37493322-37493341 None:intergenic 40.0%
!! CTTGATGTCAGTGTTGACTT+GGG - chr8_4:37493540-37493559 None:intergenic 40.0%
GGAAACATGATACATGGACT+TGG - chr8_4:37493653-37493672 None:intergenic 40.0%
GTGTGTGGATGAAGATGATG+TGG - chr8_4:37490609-37490628 None:intergenic 45.0%
GTGGAGTGAGTGGAGAAAAT+GGG - chr8_4:37490862-37490881 None:intergenic 45.0%
AGTGGAGTGAGTGGAGAAAA+TGG - chr8_4:37490863-37490882 None:intergenic 45.0%
GCTAGCAATTCTTGAAGCAG+TGG - chr8_4:37490881-37490900 None:intergenic 45.0%
! GGGGGTACAATTTGTATCAG+TGG + chr8_4:37491332-37491351 Msa1325410:intron 45.0%
! CACTTACTGAGATTCTGGAG+GGG - chr8_4:37491564-37491583 None:intergenic 45.0%
GACACTTACTGAGATTCTGG+AGG - chr8_4:37491566-37491585 None:intergenic 45.0%
! GAGGAATTACGAAGTTCTGG+AGG - chr8_4:37491590-37491609 None:intergenic 45.0%
!! GCTGGTCTTAGTCACTTAAG+AGG - chr8_4:37492019-37492038 None:intergenic 45.0%
TAAGTGACTAAGACCAGCAG+AGG + chr8_4:37492021-37492040 Msa1325410:intron 45.0%
AAGTGACTAAGACCAGCAGA+GGG + chr8_4:37492022-37492041 Msa1325410:intron 45.0%
! GCTAGTGGATGCCTATAGAT+AGG + chr8_4:37492163-37492182 Msa1325410:intron 45.0%
CAGTTCCTACTCTCCCAAAT+TGG - chr8_4:37492418-37492437 None:intergenic 45.0%
!! GGGAGAGTAGGAACTGATTT+TGG + chr8_4:37492422-37492441 Msa1325410:intron 45.0%
! CAATTTGCATCGGTGATAGC+AGG - chr8_4:37493270-37493289 None:intergenic 45.0%
CTGCTATCACCGATGCAAAT+TGG + chr8_4:37493268-37493287 Msa1325410:CDS 45.0%
! CGAATCTGAATCTCCCGTTT+TGG + chr8_4:37493305-37493324 Msa1325410:CDS 45.0%
!!! CTCCCGTTTTGGTTGAATTC+TGG + chr8_4:37493316-37493335 Msa1325410:CDS 45.0%
GCCCAGAATTCAACCAAAAC+GGG - chr8_4:37493321-37493340 None:intergenic 45.0%
ATAGGGGTGATCATTCTGCA+GGG - chr8_4:37493357-37493376 None:intergenic 45.0%
TATAGGGGTGATCATTCTGC+AGG - chr8_4:37493358-37493377 None:intergenic 45.0%
GATACTTCGAATTCCGTACC+GGG - chr8_4:37493460-37493479 None:intergenic 45.0%
GGATACTTCGAATTCCGTAC+CGG - chr8_4:37493461-37493480 None:intergenic 45.0%
!! GCTTGATGTCAGTGTTGACT+TGG - chr8_4:37493541-37493560 None:intergenic 45.0%
!!! AATTTGAATAATTTTTATAA+CGG + chr8_4:37493232-37493251 Msa1325410:intron 5.0%
!! GATTCGATGATGGTGGCCAT+CGG - chr8_4:37490730-37490749 None:intergenic 50.0%
TGAGTGGAGAAAATGGGCCT+GGG - chr8_4:37490856-37490875 None:intergenic 50.0%
TCTTGAAGCAGTGGAGTGAG+TGG - chr8_4:37490872-37490891 None:intergenic 50.0%
CACACACTACGCGTGAATTG+CGG - chr8_4:37490903-37490922 None:intergenic 50.0%
CAATTCACGCGTAGTGTGTG+AGG + chr8_4:37490903-37490922 Msa1325410:CDS 50.0%
! CAGGATACCGCTGTTGATGA+TGG + chr8_4:37490928-37490947 Msa1325410:CDS 50.0%
!! AACGGTGTCAGCAGTGGTTT+TGG + chr8_4:37491485-37491504 Msa1325410:intron 50.0%
! TGAGATTCTGGAGGGGTTCA+AGG - chr8_4:37491557-37491576 None:intergenic 50.0%
GGCGACACTTACTGAGATTC+TGG - chr8_4:37491569-37491588 None:intergenic 50.0%
GATCAATTTGGTCCCTCTGC+TGG - chr8_4:37492037-37492056 None:intergenic 50.0%
TGGTTGAATTCTGGGCTCCA+TGG + chr8_4:37493325-37493344 Msa1325410:CDS 50.0%
AGCAGTCGAAGGACTCTCAT+CGG - chr8_4:37493436-37493455 None:intergenic 50.0%
! GGCGATGGATTCGATGATGG+TGG - chr8_4:37490737-37490756 None:intergenic 55.0%
! GACGGCGATGGATTCGATGA+TGG - chr8_4:37490740-37490759 None:intergenic 55.0%
! GGAAGAAGTGCGAGGGATGA+CGG - chr8_4:37490758-37490777 None:intergenic 55.0%
!! TGATGGCGGAAGAAGTGCGA+GGG - chr8_4:37490765-37490784 None:intergenic 55.0%
AGAACTCCGGAGTGCAACGA+CGG - chr8_4:37490791-37490810 None:intergenic 55.0%
AGAAAATGGGCCTGGGCTTG+GGG - chr8_4:37490849-37490868 None:intergenic 55.0%
GAGAAAATGGGCCTGGGCTT+GGG - chr8_4:37490850-37490869 None:intergenic 55.0%
GTGAGTGGAGAAAATGGGCC+TGG - chr8_4:37490857-37490876 None:intergenic 55.0%
! CTTGACAACGGTGTCAGCAG+TGG + chr8_4:37491479-37491498 Msa1325410:intron 55.0%
GAATTCTGGGCTCCATGGTG+TGG + chr8_4:37493330-37493349 Msa1325410:CDS 55.0%
ATTCTGCAGGGACCACACCA+TGG - chr8_4:37493345-37493364 None:intergenic 55.0%
AGAGTCCTTCGACTGCTACC+CGG + chr8_4:37493439-37493458 Msa1325410:CDS 55.0%
!! GTGATGGCGGAAGAAGTGCG+AGG - chr8_4:37490766-37490785 None:intergenic 60.0%
TGCAACGACGGGAGTGATGG+CGG - chr8_4:37490779-37490798 None:intergenic 60.0%
GAGTGCAACGACGGGAGTGA+TGG - chr8_4:37490782-37490801 None:intergenic 60.0%
TCACTCCCGTCGTTGCACTC+CGG + chr8_4:37490782-37490801 Msa1325410:CDS 60.0%
GAACTCCGGAGTGCAACGAC+GGG - chr8_4:37490790-37490809 None:intergenic 60.0%
GGGGGAACTTGGGAGAACTC+CGG - chr8_4:37490804-37490823 None:intergenic 60.0%
TCCCAAGTTCCCCCGTTACG+TGG + chr8_4:37490810-37490829 Msa1325410:CDS 60.0%
! CCCACGTAACGGGGGAACTT+GGG - chr8_4:37490814-37490833 None:intergenic 60.0%
CCCAAGTTCCCCCGTTACGT+GGG + chr8_4:37490811-37490830 Msa1325410:CDS 60.0%
! TGGGTCTGAGGCCCACGTAA+CGG - chr8_4:37490825-37490844 None:intergenic 60.0%
GGAGAAAATGGGCCTGGGCT+TGG - chr8_4:37490851-37490870 None:intergenic 60.0%
ACGCGTAGTGTGTGAGGCTC+AGG + chr8_4:37490909-37490928 Msa1325410:CDS 60.0%
CCTTCGACTGCTACCCGGTA+CGG + chr8_4:37493444-37493463 Msa1325410:CDS 60.0%
! AGTGCGAGGGATGACGGCGA+TGG - chr8_4:37490752-37490771 None:intergenic 65.0%
! GCCCACGTAACGGGGGAACT+TGG - chr8_4:37490815-37490834 None:intergenic 65.0%
! GTCTGAGGCCCACGTAACGG+GGG - chr8_4:37490822-37490841 None:intergenic 65.0%
! GGTCTGAGGCCCACGTAACG+GGG - chr8_4:37490823-37490842 None:intergenic 65.0%
! GGGTCTGAGGCCCACGTAAC+GGG - chr8_4:37490824-37490843 None:intergenic 65.0%
TGGGCTTGGGGTTGGGTCTG+AGG - chr8_4:37490837-37490856 None:intergenic 65.0%
TCAGACCCAACCCCAAGCCC+AGG + chr8_4:37490836-37490855 Msa1325410:CDS 65.0%
ATGGGCCTGGGCTTGGGGTT+GGG - chr8_4:37490844-37490863 None:intergenic 65.0%
AATGGGCCTGGGCTTGGGGT+TGG - chr8_4:37490845-37490864 None:intergenic 65.0%
CCGTACCGGGTAGCAGTCGA+AGG - chr8_4:37493447-37493466 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 37490592 37493816 37490592 ID=Msa1325410;Name=Msa1325410
chr8_4 mRNA 37490592 37493816 37490592 ID=Msa1325410-mRNA-1;Parent=Msa1325410;Name=Msa1325410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=138|1|1|1|1|1|2|238|177
chr8_4 exon 37490592 37490949 37490592 ID=Msa1325410-mRNA-1:exon:11472;Parent=Msa1325410-mRNA-1
chr8_4 exon 37493265 37493816 37493265 ID=Msa1325410-mRNA-1:exon:11473;Parent=Msa1325410-mRNA-1
chr8_4 five_prime_UTR 37490592 37490729 37490592 ID=Msa1325410-mRNA-1:five_prime_utr;Parent=Msa1325410-mRNA-1
chr8_4 CDS 37490730 37490949 37490730 ID=Msa1325410-mRNA-1:cds;Parent=Msa1325410-mRNA-1
chr8_4 CDS 37493265 37493578 37493265 ID=Msa1325410-mRNA-1:cds;Parent=Msa1325410-mRNA-1
chr8_4 three_prime_UTR 37493579 37493816 37493579 ID=Msa1325410-mRNA-1:three_prime_utr;Parent=Msa1325410-mRNA-1
Gene Sequence

>Msa1325410

ATGGCCACCATCATCGAATCCATCGCCGTCATCCCTCGCACTTCTTCCGCCATCACTCCCGTCGTTGCACTCCGGAGTTCTCCCAAGTTCCCCCGTTACGTGGGCCTCAGACCCAACCCCAAGCCCAGGCCCATTTTCTCCACTCACTCCACTGCTTCAAGAATTGCTAGCCGCAATTCACGCGTAGTGTGTGAGGCTCAGGATACCGCTGTTGATGATGTGCCTGCTATCACCGATGCAAATTGGCAATCACTTGTAATCGAATCTGAATCTCCCGTTTTGGTTGAATTCTGGGCTCCATGGTGTGGTCCCTGCAGAATGATCACCCCTATAATTGATGAACTAGCAATACAATATACTGGAAAACTCAAGTGTTACAAACTCAACACCGATGAGAGTCCTTCGACTGCTACCCGGTACGGAATTCGAAGTATCCCGACAGTTATGATCTTCAAAGATGGTGAGAAAAAAGACACAGTTATTGGAGCTGTGCCCAAGTCAACACTGACATCAAGCATAGAAAAATTCTTATAA

Protein sequence

>Msa1325410

MATIIESIAVIPRTSSAITPVVALRSSPKFPRYVGLRPNPKPRPIFSTHSTASRIASRNSRVVCEAQDTAVDDVPAITDANWQSLVIESESPVLVEFWAPWCGPCRMITPIIDELAIQYTGKLKCYKLNTDESPSTATRYGIRSIPTVMIFKDGEKKDTVIGAVPKSTLTSSIEKFL*