AlfalfaGEDB | Msa0241140

M. sativa cultivar zhongmu-4 / Msa0241140

KEGG: K10352
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241140	XP_013463012.1	92.649	857	63	0	1	857	1	857	0.0	1567

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241140	sp\|Q5BQN5\|WAP_SOLLC	36.310	851	484	14	23	837	1	829	1.39e-139	437

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241140	A0A072V5F1	92.649	857	63	0	1	857	1	857	0.0	1567

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0241140	0.820532	6.525187e-53	-8.615850e-47
Msa0002710	Msa0241140	0.811379	7.211643e-51	-8.615850e-47
Msa0003400	Msa0241140	0.819219	1.302585e-52	-8.615850e-47
Msa0003630	Msa0241140	0.800471	1.419298e-48	-8.615850e-47
Msa0003890	Msa0241140	0.860551	1.908693e-63	-8.615850e-47
Msa0005030	Msa0241140	0.804311	2.296283e-49	-8.615850e-47
Msa0005270	Msa0241140	0.826828	2.189895e-54	-8.615850e-47
Msa0006110	Msa0241140	0.839611	1.428982e-57	-8.615850e-47
Msa0007440	Msa0241140	0.868584	5.855613e-66	-8.615850e-47
Msa0007470	Msa0241140	0.801916	7.183991e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241140	MtrunA17_Chr2g0292491	92.649	857	63	0	1	857	1	857	0.0	1567

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241140	AT2G34730.1	33.871	868	472	20	18	855	27	822	1.06e-115	372
Msa0241140	AT2G34730.2	32.529	870	481	22	18	855	27	822	1.16e-102	337

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Find 179 sgRNAs with CRISPR-Local

Find 529 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGAATTTATTACAA+GGG	0.533806	2_2:+16580458	Msa0241140:CDS
AAAATTAGTGAATCTTGTTT+AGG	0.224289	2_2:+16578589	Msa0241140:five_prime_UTR
AAACCTAGTTGCAGCAGCAA+AGG	0.563546	2_2:+16580615	Msa0241140:CDS
AAACTTGTTTAACCCATGAC+CGG	0.515650	2_2:+16583922	Msa0241140:exon
AAAGAGAGAATCTGGAACGG+TGG	0.585070	2_2:-16578229	None:intergenic
AAAGAGTGAAAGCAAATTCA+TGG	0.379581	2_2:-16585343	None:intergenic
AAAGGAAATTGAAGAATACA+AGG	0.596002	2_2:+16580633	Msa0241140:CDS
AAAGGAGAATTTATTACAAG+GGG	0.560840	2_2:+16580459	Msa0241140:CDS
AAATAATTGTGATGCGGTGG+TGG	0.516961	2_2:-16578156	None:intergenic
AAATTAGTGAATCTTGTTTA+GGG	0.341553	2_2:+16578590	Msa0241140:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGGAAAGAGAGAATC+TGG	-	chr2_2:16578240-16578259	None:intergenic	30.0%
GCCATAACATGATTAAAGTT+TGG	+	chr2_2:16578411-16578430	Msa0241140:intron	30.0%
TTATGACAGTGTTCTGTATT+TGG	+	chr2_2:16578549-16578568	Msa0241140:intron	30.0%
GTGAGTGATTCTGTTATAAA+GGG	+	chr2_2:16578774-16578793	Msa0241140:CDS	30.0%
TGATTCTGTTATAAAGGGTA+TGG	+	chr2_2:16578779-16578798	Msa0241140:CDS	30.0%
AAGCTAAGTAGTTTATGTGT+TGG	+	chr2_2:16578873-16578892	Msa0241140:CDS	30.0%
TGAAAGTCTGAAAGATACTA+TGG	+	chr2_2:16579184-16579203	Msa0241140:CDS	30.0%
CTATTGAATCTGAAAGAAAG+AGG	+	chr2_2:16579761-16579780	Msa0241140:CDS	30.0%
CTTGTCTTTCTTCAATGAAA+AGG	-	chr2_2:16579792-16579811	None:intergenic	30.0%
AAATTGAATGAAGTCCTTGA+TGG	+	chr2_2:16579854-16579873	Msa0241140:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	16578096	16585567	16578096	ID=Msa0241140;Name=Msa0241140
chr2_2	mRNA	16578096	16585567	16578096	ID=Msa0241140-mRNA-1;Parent=Msa0241140;Name=Msa0241140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=333\|1\|1\|1\|0.6\|0.33\|6\|441\|857
chr2_2	exon	16578096	16578365	16578096	ID=Msa0241140-mRNA-1:exon:6775;Parent=Msa0241140-mRNA-1
chr2_2	exon	16578558	16580902	16578558	ID=Msa0241140-mRNA-1:exon:6776;Parent=Msa0241140-mRNA-1
chr2_2	exon	16581385	16581511	16581385	ID=Msa0241140-mRNA-1:exon:6777;Parent=Msa0241140-mRNA-1
chr2_2	exon	16582523	16582624	16582523	ID=Msa0241140-mRNA-1:exon:6778;Parent=Msa0241140-mRNA-1
chr2_2	exon	16583871	16583944	16583871	ID=Msa0241140-mRNA-1:exon:6779;Parent=Msa0241140-mRNA-1
chr2_2	exon	16585138	16585567	16585138	ID=Msa0241140-mRNA-1:exon:6780;Parent=Msa0241140-mRNA-1
chr2_2	five_prime_UTR	16578096	16578365	16578096	ID=Msa0241140-mRNA-1:five_prime_utr;Parent=Msa0241140-mRNA-1
chr2_2	five_prime_UTR	16578558	16578620	16578558	ID=Msa0241140-mRNA-1:five_prime_utr;Parent=Msa0241140-mRNA-1
chr2_2	CDS	16578621	16580902	16578621	ID=Msa0241140-mRNA-1:cds;Parent=Msa0241140-mRNA-1
chr2_2	CDS	16581385	16581511	16581385	ID=Msa0241140-mRNA-1:cds;Parent=Msa0241140-mRNA-1
chr2_2	CDS	16582523	16582624	16582523	ID=Msa0241140-mRNA-1:cds;Parent=Msa0241140-mRNA-1
chr2_2	CDS	16583871	16583933	16583871	ID=Msa0241140-mRNA-1:cds;Parent=Msa0241140-mRNA-1
chr2_2	three_prime_UTR	16583934	16583944	16583934	ID=Msa0241140-mRNA-1:three_prime_utr;Parent=Msa0241140-mRNA-1
chr2_2	three_prime_UTR	16585138	16585567	16585138	ID=Msa0241140-mRNA-1:three_prime_utr;Parent=Msa0241140-mRNA-1

Gene Sequence

>Msa0241140

ATGATGAAGGAGGGGTTTGTTGTTATGAATGGTGGTGAAAAGGTTTTTGAGAATGGTGTTAAGGATGATGATGAGAGTCTTGGTGAGCACATAATTGAGGAAATGGAGTCATTTTTTGATGATATCGATGAACGGTTGATTATTTCTAGGATGGTGAGTGATTCTGTTATAAAGGGTATGGTTAATGCTGTTGAGGAACAGGCGGCTGAGAGAATTGCGCAAAAAGAATCGGAGGTCGTTGGGTTGAAGAAAAAGCTAAGTAGTTTATGTGTTGGTTCGGATGAAGCTAAAATGATGTGGTCTTCGGTGCGTTGTAATGAAACCCATGAAGGTGGTACACGTCGTTTTTTAGATGGTGTTATGGAGAAAGATAGATTTATGAAGCCTGTGGGTAGTCTTAAATTTGAGATACATGAGCAGTTGAGCCAACTCAAAAAGGAAATAAATAAAATTAGAGGACTTAGTTCAACAAGAAGATTTAGTTCGGGTTCGGATTTGGTTGGTTTAGGTGGTATTCTGCAGGAGAATGTGCCGGAAAGATGGATTTATGTCGATAAAGCTTTTGAAAGTCTGAAAGATACTATGGATTCTTTCTCCAGAAGGATAGAAATTACGGATCAGTTATCGAAGGTAACAACACTTTCTGAGTGGCAGGAGGAGCAGGAGTTTCGTTTGGAAATTGAGCGGATGGTAATTCGCAATTGTATCCGGAGTTTGCAGCAGGAGATTGAACGAAAATTATGTGAAGTTTGTGAATCTGAAAGTAGAAATAGTTTTAACCAATATAAAGAGATCTCAAGTTTGCGTCAGGATTTGGATTCAATTTTTAGAACACTGTCTGTTTTTGAAACTGGGACGCTTATTTCTCATGGATCCTTGGAGCATACTGATGATTGGTGTCATAATAAGAGGGCAGACCATGTCCACTTGAAGCTTTCGACAGATCATTTGTCGGCTTCAACTTTGGAAGAAAATGGGAAGCACGGCGATTCAAAGATTAGCAAGCCTGATAGTTTGGATTCTGGCTCTCTGAAGGACATGTCTAAAGATGATTTGATTACTTATATAACTAAGATGAGAAGAAACCATGAATCTCAAGTGCATGAGAAGACCGAAGAAAACTTTTGTCTTAGGCGGGAACTATTGAATCTGAAAGAAAGAGGTTCTTCCTTTTCATTGAAGAAAGACAAGGACTTTGATTTGTTGAAGAAAAAAATCCCTGATGCCATCTCAAAATTGAATGAAGTCCTTGATGGAAATGAGAAATTGCGTCAATTCAGTGAGAACATTGAATCTCTTTGCAGTTTCAAAGATAGATTGGATTTCTTACAATCTGAGAATCTTCAACTGAAGGACATGCTAGCTGATAAGAATAAGGAAATTAAGAGTCTATCTTCTCAGCTTTCTGCTGCTATGGGAAAATTGTCACAGCAACAACTGACTGAGGAAAATTTGTTACAATCTGTTCAGAAGCTTGAGGATGATGTTGGGGATGCACATGTTGAAGCTTCAGTTATTCAAGACGTGTATAAATGTCTCTTTAAAGATATGGAAAGTGAATGTAGATTCATTACTGAAGACTTGCATCTCAAGTATGGTTTTATGCAAGAAATGTATGAAGCAATGTTGAAAGATACCGTTGACAGTGCTCAAGTTTCTAATGGGCTGGAAATAGAAGAAGCAAATATCGAGTCAATTATGATTGAAGGGCTACTGGATATTAATCAAATTATATTCAAAGGAGCTTTGGTAGATGCAGACGAAGCATTAAAATCCAAAGCTGCCGAGAACAACAAACTAAAATATGAAATACTTACGTTGAAATCAACAGTGGAAGAAAAGGAGAATTTATTACAAGGGGTAACATATGCTTTGGAACAAGAAAAGCAAAAGATGGAATTGGCCTCTCAACAGCTTGACAGTTTAAGAACTGAGACAGATTGTCAACAAAATTGGATTGTGGAGAACAGTAAAGAGTTGGATGTTACTAAGCGAAACCTAGTTGCAGCAGCAAAGGAAATTGAAGAATACAAGGAGCAAATGCAGAAGTTACATGAAGATCTCGAACAAAGGGTGAATGAGCTTAGAGAAGTTGATAAAGAAAGAAGAGAGCTTTGTGCTGTTACAAAAAATCATCAAGATGCATTGGAGTGTATTGAGGCAAAAGAAAGGGAAACCAGGAAACAAATGGAGTCAACCATTAATCTCATCCATAAATTGTTGACAATGGTTAACGATGTAGAAGCTAGTGTAAATGAAGATGTTTCAAGAAATTGTATGAGGCTTGAATGCATGAGTTCTGAGTTCTCTTTCCTCAAGAACAAAGCCAGTGCACTTAAAACCATGGGATTGGTGTACAAGCAAAAGTTTGAAACAAAAAGTTCTGATCTTGCAAAGGCTGAAGCAGAGGTTGATCTTTTAGGGGACGAGGTAGATACTCTTCTTAGACTCCTTGAAAGGATATACGTTGCACTTGACCATTATTCACCAATATTGCAACATTACCCTGGGATTATCGAGATTCTGGAGCTTGTAAGAAGAGAATTGACTGGAGAGTCTAGAAAACTTGTTTAA

Protein sequence

>Msa0241140

MMKEGFVVMNGGEKVFENGVKDDDESLGEHIIEEMESFFDDIDERLIISRMVSDSVIKGMVNAVEEQAAERIAQKESEVVGLKKKLSSLCVGSDEAKMMWSSVRCNETHEGGTRRFLDGVMEKDRFMKPVGSLKFEIHEQLSQLKKEINKIRGLSSTRRFSSGSDLVGLGGILQENVPERWIYVDKAFESLKDTMDSFSRRIEITDQLSKVTTLSEWQEEQEFRLEIERMVIRNCIRSLQQEIERKLCEVCESESRNSFNQYKEISSLRQDLDSIFRTLSVFETGTLISHGSLEHTDDWCHNKRADHVHLKLSTDHLSASTLEENGKHGDSKISKPDSLDSGSLKDMSKDDLITYITKMRRNHESQVHEKTEENFCLRRELLNLKERGSSFSLKKDKDFDLLKKKIPDAISKLNEVLDGNEKLRQFSENIESLCSFKDRLDFLQSENLQLKDMLADKNKEIKSLSSQLSAAMGKLSQQQLTEENLLQSVQKLEDDVGDAHVEASVIQDVYKCLFKDMESECRFITEDLHLKYGFMQEMYEAMLKDTVDSAQVSNGLEIEEANIESIMIEGLLDINQIIFKGALVDADEALKSKAAENNKLKYEILTLKSTVEEKENLLQGVTYALEQEKQKMELASQQLDSLRTETDCQQNWIVENSKELDVTKRNLVAAAKEIEEYKEQMQKLHEDLEQRVNELREVDKERRELCAVTKNHQDALECIEAKERETRKQMESTINLIHKLLTMVNDVEASVNEDVSRNCMRLECMSSEFSFLKNKASALKTMGLVYKQKFETKSSDLAKAEAEVDLLGDEVDTLLRLLERIYVALDHYSPILQHYPGIIEILELVRRELTGESRKLV*