Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115780 | sp|Q9FMW4|GEML8_ARATH | 59.184 | 196 | 70 | 2 | 28 | 218 | 23 | 213 | 1.46e-75 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115780 | B7FJD2 | 94.170 | 223 | 13 | 0 | 1 | 223 | 1 | 223 | 3.37e-152 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0115740 | Msa0115780 | 0.801286 | 9.672226e-49 | -8.615850e-47 |
| Msa0115780 | Msa0241750 | 0.802970 | 4.356191e-49 | -8.615850e-47 |
| Msa0115780 | Msa0590620 | -0.804411 | 2.188137e-49 | -8.615850e-47 |
| Msa0115780 | Msa0853200 | -0.802288 | 6.022408e-49 | -8.615850e-47 |
| Msa0115780 | Msa1154060 | 0.803613 | 3.207304e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115780 | MtrunA17_Chr1g0212091 | 94.170 | 223 | 13 | 0 | 1 | 223 | 1 | 223 | 6.50e-156 | 431 |
| Msa0115780 | MtrunA17_Chr1g0162171 | 63.927 | 219 | 76 | 2 | 5 | 220 | 4 | 222 | 1.26e-95 | 278 |
| Msa0115780 | MtrunA17_Chr1g0212121 | 55.263 | 228 | 83 | 3 | 1 | 220 | 1 | 217 | 4.80e-81 | 241 |
| Msa0115780 | MtrunA17_Chr1g0212171 | 53.363 | 223 | 98 | 4 | 1 | 220 | 1 | 220 | 2.27e-75 | 227 |
| Msa0115780 | MtrunA17_Chr1g0212181 | 53.182 | 220 | 100 | 2 | 1 | 220 | 1 | 217 | 1.13e-73 | 223 |
| Msa0115780 | MtrunA17_Chr6g0481891 | 48.259 | 201 | 97 | 1 | 18 | 218 | 3 | 196 | 2.36e-60 | 188 |
| Msa0115780 | MtrunA17_Chr8g0388871 | 57.500 | 160 | 67 | 1 | 60 | 218 | 23 | 182 | 3.90e-59 | 184 |
| Msa0115780 | MtrunA17_Chr1g0212111 | 87.963 | 108 | 13 | 0 | 113 | 220 | 49 | 156 | 2.79e-58 | 182 |
| Msa0115780 | MtrunA17_Chr7g0251801 | 36.313 | 179 | 114 | 0 | 40 | 218 | 96 | 274 | 1.26e-41 | 142 |
| Msa0115780 | MtrunA17_Chr3g0133221 | 39.355 | 155 | 91 | 2 | 65 | 218 | 103 | 255 | 4.47e-39 | 135 |
| Msa0115780 | MtrunA17_Chr8g0367701 | 36.813 | 182 | 102 | 3 | 48 | 218 | 88 | 267 | 1.51e-38 | 134 |
| Msa0115780 | MtrunA17_Chr2g0315771 | 36.364 | 176 | 111 | 1 | 46 | 220 | 52 | 227 | 9.33e-31 | 113 |
| Msa0115780 | MtrunA17_Chr1g0212131 | 60.317 | 63 | 25 | 0 | 158 | 220 | 1 | 63 | 2.21e-22 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115780 | AT5G23370.1 | 59.184 | 196 | 70 | 2 | 28 | 218 | 23 | 213 | 1.48e-76 | 230 |
| Msa0115780 | AT5G08350.1 | 55.610 | 205 | 81 | 3 | 19 | 218 | 13 | 212 | 2.24e-74 | 224 |
| Msa0115780 | AT5G23350.1 | 57.143 | 196 | 74 | 2 | 28 | 218 | 23 | 213 | 9.78e-73 | 220 |
| Msa0115780 | AT5G23360.1 | 55.497 | 191 | 77 | 2 | 28 | 218 | 23 | 205 | 4.46e-69 | 211 |
| Msa0115780 | AT4G01600.3 | 41.379 | 174 | 101 | 1 | 48 | 220 | 14 | 187 | 1.55e-42 | 142 |
| Msa0115780 | AT4G01600.1 | 41.379 | 174 | 101 | 1 | 48 | 220 | 53 | 226 | 3.67e-42 | 143 |
| Msa0115780 | AT5G13200.1 | 34.000 | 200 | 129 | 2 | 16 | 214 | 59 | 256 | 2.93e-41 | 142 |
| Msa0115780 | AT4G01600.2 | 39.891 | 183 | 107 | 2 | 41 | 220 | 39 | 221 | 9.53e-39 | 134 |
| Msa0115780 | AT1G28200.1 | 34.343 | 198 | 119 | 4 | 29 | 218 | 60 | 254 | 1.64e-37 | 132 |
| Msa0115780 | AT1G28200.2 | 34.343 | 198 | 119 | 4 | 29 | 218 | 60 | 254 | 1.64e-37 | 132 |
| Msa0115780 | AT2G22475.1 | 35.165 | 182 | 115 | 2 | 38 | 218 | 112 | 291 | 7.18e-37 | 131 |
| Msa0115780 | AT5G13200.2 | 32.000 | 125 | 85 | 0 | 42 | 166 | 84 | 208 | 1.72e-22 | 91.7 |
| Msa0115780 | AT4G40100.1 | 29.609 | 179 | 92 | 3 | 43 | 218 | 69 | 216 | 4.22e-21 | 88.2 |
| Msa0115780 | AT2G22475.2 | 32.143 | 112 | 76 | 0 | 38 | 149 | 112 | 223 | 4.34e-17 | 77.8 |
Find 44 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATAACAGATACAGTAAA+AGG | 0.240338 | 1_3:+34699848 | Msa0115780:CDS |
| TTTCTTCAAGAGCTACTAAA+TGG | 0.262025 | 1_3:+34699303 | Msa0115780:CDS |
| ACTCTACTCAATTCTCCTTT+TGG | 0.282744 | 1_3:-34700076 | None:intergenic |
| CTCTATCAGCTCAAGTTATC+TGG | 0.303053 | 1_3:+34699329 | Msa0115780:CDS |
| ATTGAGTAGAGTTCGATATA+AGG | 0.312499 | 1_3:+34700087 | Msa0115780:CDS |
| CAGTATTTGCCAGTAGAATC+AGG | 0.352707 | 1_3:-34699378 | None:intergenic |
| TCCTCCAACCTGAAGAATTC+TGG | 0.354329 | 1_3:-34699888 | None:intergenic |
| GCTGGGAGCCAGAATTCTTC+AGG | 0.362862 | 1_3:+34699880 | Msa0115780:CDS |
| TTATGGGTTTCTTTAATTAT+CGG | 0.380305 | 1_3:+34700345 | Msa0115780:CDS |
| CTGGCTAAGATGAACATGTT+TGG | 0.417230 | 1_3:+34699541 | Msa0115780:CDS |
| AGGTAAATTAAATTCAGTTC+TGG | 0.426046 | 1_3:+34699522 | Msa0115780:intron |
| AGTAAAAGGGCAATTGAGGC+TGG | 0.429664 | 1_3:+34699862 | Msa0115780:CDS |
| GTCTATCACAAAATCAAAGA+AGG | 0.465270 | 1_3:+34699404 | Msa0115780:CDS |
| ATCAGGCAAGTATCTCTTTG+AGG | 0.466817 | 1_3:-34699361 | None:intergenic |
| AGATACTTGCCTGATTCTAC+TGG | 0.476216 | 1_3:+34699369 | Msa0115780:CDS |
| ATGAAGAGGAGGCCAGCTAT+AGG | 0.476519 | 1_3:-34700001 | None:intergenic |
| ATCAAGATCTCTTCCCCAAA+AGG | 0.477640 | 1_3:+34700061 | Msa0115780:CDS |
| ATCAGCTCAAGTTATCTGGC+TGG | 0.496115 | 1_3:+34699333 | Msa0115780:CDS |
| TAGTAGCTCTTGAAGAAATG+AGG | 0.516240 | 1_3:-34699298 | None:intergenic |
| GCCAGAATTCTTCAGGTTGG+AGG | 0.528156 | 1_3:+34699887 | Msa0115780:CDS |
| ATACAGTAAAAGGGCAATTG+AGG | 0.534906 | 1_3:+34699858 | Msa0115780:CDS |
| TTGCTATCTTCTTGTCTCTG+AGG | 0.537937 | 1_3:-34699262 | None:intergenic |
| ACCACATCAGGTCCTATAGC+TGG | 0.538413 | 1_3:+34699989 | Msa0115780:CDS |
| AGATAACAGATACAGTAAAA+GGG | 0.539158 | 1_3:+34699849 | Msa0115780:CDS |
| TGTTACTTATCAACCACATC+AGG | 0.547818 | 1_3:+34699977 | Msa0115780:CDS |
| AGAATAATTGATGAGGCAGA+AGG | 0.551752 | 1_3:-34700454 | None:intergenic |
| GCACATGGCGTCCGAGAGCA+TGG | 0.554650 | 1_3:+34699583 | Msa0115780:CDS |
| GAATAATTGATGAGGCAGAA+GGG | 0.556060 | 1_3:-34700453 | None:intergenic |
| AATAATTGATGAGGCAGAAG+GGG | 0.556803 | 1_3:-34700452 | None:intergenic |
| TCAGCTCAAGTTATCTGGCT+GGG | 0.557066 | 1_3:+34699334 | Msa0115780:CDS |
| GGAGCCAGAATTCTTCAGGT+TGG | 0.558952 | 1_3:+34699884 | Msa0115780:CDS |
| AGCTTTAAGATATCTCCAGC+AGG | 0.564241 | 1_3:+34700370 | Msa0115780:CDS |
| TCTATCACAAAATCAAAGAA+GGG | 0.593364 | 1_3:+34699405 | Msa0115780:CDS |
| AAGATTATATACCATGCTCT+CGG | 0.593942 | 1_3:-34699594 | None:intergenic |
| ATAGAAATAGTCACTGTGGA+TGG | 0.601998 | 1_3:+34700308 | Msa0115780:CDS |
| GTAAAAGGGCAATTGAGGCT+GGG | 0.608194 | 1_3:+34699863 | Msa0115780:CDS |
| CTTTGTGAGTGGATATGAAG+AGG | 0.608902 | 1_3:-34700015 | None:intergenic |
| AACATGTTTGGAAGAAAAGA+CGG | 0.627231 | 1_3:+34699553 | Msa0115780:CDS |
| GCCAGCTATAGGACCTGATG+TGG | 0.639099 | 1_3:-34699990 | None:intergenic |
| ACTTCAAAGAATAATTGATG+AGG | 0.643914 | 1_3:-34700461 | None:intergenic |
| AAAGACGGTGGTTTAGCACA+TGG | 0.659022 | 1_3:+34699568 | Msa0115780:CDS |
| TGTGAGTGGATATGAAGAGG+AGG | 0.670894 | 1_3:-34700012 | None:intergenic |
| ATACATAGAAATAGTCACTG+TGG | 0.703928 | 1_3:+34700304 | Msa0115780:CDS |
| ATGTTTGGAAGAAAAGACGG+TGG | 0.712456 | 1_3:+34699556 | Msa0115780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAAATTAATTGATCG+TGG | + | chr1_3:34699483-34699502 | Msa0115780:intron | 15.0% |
| !!! | AATATGCATTATACATATTT+TGG | - | chr1_3:34699748-34699767 | None:intergenic | 15.0% |
| !!! | AATATGTATAATGCATATTT+TGG | + | chr1_3:34699749-34699768 | Msa0115780:intron | 15.0% |
| !! | CTGAAATAGTAAAAAAATTA+AGG | - | chr1_3:34700216-34700235 | None:intergenic | 15.0% |
| !!! | CTTAATTTTTTTACTATTTC+AGG | + | chr1_3:34700214-34700233 | Msa0115780:intron | 15.0% |
| !! | AAATTTAAATTAATTGATCG+TGG | + | chr1_3:34699483-34699502 | Msa0115780:intron | 15.0% |
| !!! | AATATGCATTATACATATTT+TGG | - | chr1_3:34699748-34699767 | None:intergenic | 15.0% |
| !!! | AATATGTATAATGCATATTT+TGG | + | chr1_3:34699749-34699768 | Msa0115780:intron | 15.0% |
| !! | CTGAAATAGTAAAAAAATTA+AGG | - | chr1_3:34700216-34700235 | None:intergenic | 15.0% |
| !!! | CTTAATTTTTTTACTATTTC+AGG | + | chr1_3:34700214-34700233 | Msa0115780:intron | 15.0% |
| !!! | ATTTCTATGTATTTTTCTGA+TGG | - | chr1_3:34700296-34700315 | None:intergenic | 20.0% |
| !! | TTATGGGTTTCTTTAATTAT+CGG | + | chr1_3:34700345-34700364 | Msa0115780:CDS | 20.0% |
| !!! | ATTTCTATGTATTTTTCTGA+TGG | - | chr1_3:34700296-34700315 | None:intergenic | 20.0% |
| !! | TTATGGGTTTCTTTAATTAT+CGG | + | chr1_3:34700345-34700364 | Msa0115780:CDS | 20.0% |
| ! | TCTATCACAAAATCAAAGAA+GGG | + | chr1_3:34699405-34699424 | Msa0115780:CDS | 25.0% |
| ! | AGGTAAATTAAATTCAGTTC+TGG | + | chr1_3:34699522-34699541 | Msa0115780:intron | 25.0% |
| ! | AAGATAACAGATACAGTAAA+AGG | + | chr1_3:34699848-34699867 | Msa0115780:CDS | 25.0% |
| ! | AGATAACAGATACAGTAAAA+GGG | + | chr1_3:34699849-34699868 | Msa0115780:CDS | 25.0% |
| !! | TTAAGTTTAAGATTACATGC+TGG | - | chr1_3:34700193-34700212 | None:intergenic | 25.0% |
| ! | ACTTCAAAGAATAATTGATG+AGG | - | chr1_3:34700464-34700483 | None:intergenic | 25.0% |
| ! | TCTATCACAAAATCAAAGAA+GGG | + | chr1_3:34699405-34699424 | Msa0115780:CDS | 25.0% |
| ! | AGGTAAATTAAATTCAGTTC+TGG | + | chr1_3:34699522-34699541 | Msa0115780:intron | 25.0% |
| ! | AAGATAACAGATACAGTAAA+AGG | + | chr1_3:34699848-34699867 | Msa0115780:CDS | 25.0% |
| ! | AGATAACAGATACAGTAAAA+GGG | + | chr1_3:34699849-34699868 | Msa0115780:CDS | 25.0% |
| !! | TTAAGTTTAAGATTACATGC+TGG | - | chr1_3:34700193-34700212 | None:intergenic | 25.0% |
| ! | ACTTCAAAGAATAATTGATG+AGG | - | chr1_3:34700464-34700483 | None:intergenic | 25.0% |
| TTTCTTCAAGAGCTACTAAA+TGG | + | chr1_3:34699303-34699322 | Msa0115780:CDS | 30.0% | |
| GTCTATCACAAAATCAAAGA+AGG | + | chr1_3:34699404-34699423 | Msa0115780:CDS | 30.0% | |
| !!! | GTGGTCTTTTTTCTATTTTC+AGG | + | chr1_3:34699502-34699521 | Msa0115780:intron | 30.0% |
| AACATGTTTGGAAGAAAAGA+CGG | + | chr1_3:34699553-34699572 | Msa0115780:CDS | 30.0% | |
| AAGATTATATACCATGCTCT+CGG | - | chr1_3:34699597-34699616 | None:intergenic | 30.0% | |
| !!! | AATGCATATTTTGGCATGAT+AGG | + | chr1_3:34699758-34699777 | Msa0115780:intron | 30.0% |
| ATTGAGTAGAGTTCGATATA+AGG | + | chr1_3:34700087-34700106 | Msa0115780:CDS | 30.0% | |
| TGCTTAAATGTGCATGTTAA+TGG | + | chr1_3:34700119-34700138 | Msa0115780:intron | 30.0% | |
| !!! | GTTTCTTCACATTTTGACTT+TGG | - | chr1_3:34700274-34700293 | None:intergenic | 30.0% |
| ATACATAGAAATAGTCACTG+TGG | + | chr1_3:34700304-34700323 | Msa0115780:CDS | 30.0% | |
| ! | ATTTCTATGTGCTTTTCTGA+AGG | - | chr1_3:34700400-34700419 | None:intergenic | 30.0% |
| TTTCTTCAAGAGCTACTAAA+TGG | + | chr1_3:34699303-34699322 | Msa0115780:CDS | 30.0% | |
| GTCTATCACAAAATCAAAGA+AGG | + | chr1_3:34699404-34699423 | Msa0115780:CDS | 30.0% | |
| !!! | GTGGTCTTTTTTCTATTTTC+AGG | + | chr1_3:34699502-34699521 | Msa0115780:intron | 30.0% |
| AACATGTTTGGAAGAAAAGA+CGG | + | chr1_3:34699553-34699572 | Msa0115780:CDS | 30.0% | |
| AAGATTATATACCATGCTCT+CGG | - | chr1_3:34699597-34699616 | None:intergenic | 30.0% | |
| !!! | AATGCATATTTTGGCATGAT+AGG | + | chr1_3:34699758-34699777 | Msa0115780:intron | 30.0% |
| ATTGAGTAGAGTTCGATATA+AGG | + | chr1_3:34700087-34700106 | Msa0115780:CDS | 30.0% | |
| TGCTTAAATGTGCATGTTAA+TGG | + | chr1_3:34700119-34700138 | Msa0115780:intron | 30.0% | |
| !!! | GTTTCTTCACATTTTGACTT+TGG | - | chr1_3:34700274-34700293 | None:intergenic | 30.0% |
| ATACATAGAAATAGTCACTG+TGG | + | chr1_3:34700304-34700323 | Msa0115780:CDS | 30.0% | |
| ! | ATTTCTATGTGCTTTTCTGA+AGG | - | chr1_3:34700400-34700419 | None:intergenic | 30.0% |
| TAGTAGCTCTTGAAGAAATG+AGG | - | chr1_3:34699301-34699320 | None:intergenic | 35.0% | |
| TCACAAAATCAAAGAAGGGT+AGG | + | chr1_3:34699409-34699428 | Msa0115780:intron | 35.0% | |
| ! | GAGAGCATGGTATATAATCT+TGG | + | chr1_3:34699596-34699615 | Msa0115780:intron | 35.0% |
| !! | TTCACTTTTGCTTAGTTGCA+AGG | + | chr1_3:34699637-34699656 | Msa0115780:intron | 35.0% |
| ! | TGGAAGCATGACAGAATATT+TGG | - | chr1_3:34699701-34699720 | None:intergenic | 35.0% |
| ATACAGTAAAAGGGCAATTG+AGG | + | chr1_3:34699858-34699877 | Msa0115780:CDS | 35.0% | |
| ! | TGTTACTTATCAACCACATC+AGG | + | chr1_3:34699977-34699996 | Msa0115780:CDS | 35.0% |
| ACAAAAAGCAACTTTGTGAG+TGG | - | chr1_3:34700029-34700048 | None:intergenic | 35.0% | |
| ! | TCTACTCAATTCTCCTTTTG+GGG | - | chr1_3:34700077-34700096 | None:intergenic | 35.0% |
| ! | CTCTACTCAATTCTCCTTTT+GGG | - | chr1_3:34700078-34700097 | None:intergenic | 35.0% |
| ! | ACTCTACTCAATTCTCCTTT+TGG | - | chr1_3:34700079-34700098 | None:intergenic | 35.0% |
| ! | ACATGCTGAATCTTTTCATG+TGG | - | chr1_3:34700248-34700267 | None:intergenic | 35.0% |
| ATAGAAATAGTCACTGTGGA+TGG | + | chr1_3:34700308-34700327 | Msa0115780:CDS | 35.0% | |
| !!! | TGGTTTTGACTTCTGGTTTA+TGG | + | chr1_3:34700328-34700347 | Msa0115780:CDS | 35.0% |
| !!! | GGTTTTGACTTCTGGTTTAT+GGG | + | chr1_3:34700329-34700348 | Msa0115780:CDS | 35.0% |
| AATAATTGATGAGGCAGAAG+GGG | - | chr1_3:34700455-34700474 | None:intergenic | 35.0% | |
| GAATAATTGATGAGGCAGAA+GGG | - | chr1_3:34700456-34700475 | None:intergenic | 35.0% | |
| AGAATAATTGATGAGGCAGA+AGG | - | chr1_3:34700457-34700476 | None:intergenic | 35.0% | |
| TAGTAGCTCTTGAAGAAATG+AGG | - | chr1_3:34699301-34699320 | None:intergenic | 35.0% | |
| TCACAAAATCAAAGAAGGGT+AGG | + | chr1_3:34699409-34699428 | Msa0115780:intron | 35.0% | |
| ! | GAGAGCATGGTATATAATCT+TGG | + | chr1_3:34699596-34699615 | Msa0115780:intron | 35.0% |
| !! | TTCACTTTTGCTTAGTTGCA+AGG | + | chr1_3:34699637-34699656 | Msa0115780:intron | 35.0% |
| ! | TGGAAGCATGACAGAATATT+TGG | - | chr1_3:34699701-34699720 | None:intergenic | 35.0% |
| ATACAGTAAAAGGGCAATTG+AGG | + | chr1_3:34699858-34699877 | Msa0115780:CDS | 35.0% | |
| ! | TGTTACTTATCAACCACATC+AGG | + | chr1_3:34699977-34699996 | Msa0115780:CDS | 35.0% |
| ACAAAAAGCAACTTTGTGAG+TGG | - | chr1_3:34700029-34700048 | None:intergenic | 35.0% | |
| ! | TCTACTCAATTCTCCTTTTG+GGG | - | chr1_3:34700077-34700096 | None:intergenic | 35.0% |
| ! | CTCTACTCAATTCTCCTTTT+GGG | - | chr1_3:34700078-34700097 | None:intergenic | 35.0% |
| ! | ACTCTACTCAATTCTCCTTT+TGG | - | chr1_3:34700079-34700098 | None:intergenic | 35.0% |
| ! | ACATGCTGAATCTTTTCATG+TGG | - | chr1_3:34700248-34700267 | None:intergenic | 35.0% |
| ATAGAAATAGTCACTGTGGA+TGG | + | chr1_3:34700308-34700327 | Msa0115780:CDS | 35.0% | |
| !!! | TGGTTTTGACTTCTGGTTTA+TGG | + | chr1_3:34700328-34700347 | Msa0115780:CDS | 35.0% |
| !!! | GGTTTTGACTTCTGGTTTAT+GGG | + | chr1_3:34700329-34700348 | Msa0115780:CDS | 35.0% |
| AATAATTGATGAGGCAGAAG+GGG | - | chr1_3:34700455-34700474 | None:intergenic | 35.0% | |
| GAATAATTGATGAGGCAGAA+GGG | - | chr1_3:34700456-34700475 | None:intergenic | 35.0% | |
| AGAATAATTGATGAGGCAGA+AGG | - | chr1_3:34700457-34700476 | None:intergenic | 35.0% | |
| TTGCTATCTTCTTGTCTCTG+AGG | - | chr1_3:34699265-34699284 | None:intergenic | 40.0% | |
| CTCTATCAGCTCAAGTTATC+TGG | + | chr1_3:34699329-34699348 | Msa0115780:CDS | 40.0% | |
| ATCAGGCAAGTATCTCTTTG+AGG | - | chr1_3:34699364-34699383 | None:intergenic | 40.0% | |
| AGATACTTGCCTGATTCTAC+TGG | + | chr1_3:34699369-34699388 | Msa0115780:CDS | 40.0% | |
| CAGTATTTGCCAGTAGAATC+AGG | - | chr1_3:34699381-34699400 | None:intergenic | 40.0% | |
| CTGGCTAAGATGAACATGTT+TGG | + | chr1_3:34699541-34699560 | Msa0115780:CDS | 40.0% | |
| ATGTTTGGAAGAAAAGACGG+TGG | + | chr1_3:34699556-34699575 | Msa0115780:CDS | 40.0% | |
| GTCATGCTTCCAAAACTACT+AGG | + | chr1_3:34699709-34699728 | Msa0115780:intron | 40.0% | |
| CTTCCAAAACTACTAGGCTT+AGG | + | chr1_3:34699715-34699734 | Msa0115780:intron | 40.0% | |
| ! | TGACCTAAGCCTAGTAGTTT+TGG | - | chr1_3:34699721-34699740 | None:intergenic | 40.0% |
| ! | TTTTAACCTGCAGTGAGACT+TGG | + | chr1_3:34699821-34699840 | Msa0115780:intron | 40.0% |
| CTTTGTGAGTGGATATGAAG+AGG | - | chr1_3:34700018-34700037 | None:intergenic | 40.0% | |
| !! | TTTTGGGGAAGAGATCTTGA+TGG | - | chr1_3:34700062-34700081 | None:intergenic | 40.0% |
| ATCAAGATCTCTTCCCCAAA+AGG | + | chr1_3:34700061-34700080 | Msa0115780:CDS | 40.0% | |
| !! | AGCTTTAAGATATCTCCAGC+AGG | + | chr1_3:34700370-34700389 | Msa0115780:CDS | 40.0% |
| !! | CTTCTTGTCTCTGAGGATTT+TGG | - | chr1_3:34699258-34699277 | None:intergenic | 40.0% |
| TTGCTATCTTCTTGTCTCTG+AGG | - | chr1_3:34699265-34699284 | None:intergenic | 40.0% | |
| CTCTATCAGCTCAAGTTATC+TGG | + | chr1_3:34699329-34699348 | Msa0115780:CDS | 40.0% | |
| ATCAGGCAAGTATCTCTTTG+AGG | - | chr1_3:34699364-34699383 | None:intergenic | 40.0% | |
| AGATACTTGCCTGATTCTAC+TGG | + | chr1_3:34699369-34699388 | Msa0115780:CDS | 40.0% | |
| CAGTATTTGCCAGTAGAATC+AGG | - | chr1_3:34699381-34699400 | None:intergenic | 40.0% | |
| CTGGCTAAGATGAACATGTT+TGG | + | chr1_3:34699541-34699560 | Msa0115780:CDS | 40.0% | |
| ATGTTTGGAAGAAAAGACGG+TGG | + | chr1_3:34699556-34699575 | Msa0115780:CDS | 40.0% | |
| GTCATGCTTCCAAAACTACT+AGG | + | chr1_3:34699709-34699728 | Msa0115780:intron | 40.0% | |
| CTTCCAAAACTACTAGGCTT+AGG | + | chr1_3:34699715-34699734 | Msa0115780:intron | 40.0% | |
| ! | TGACCTAAGCCTAGTAGTTT+TGG | - | chr1_3:34699721-34699740 | None:intergenic | 40.0% |
| ! | TTTTAACCTGCAGTGAGACT+TGG | + | chr1_3:34699821-34699840 | Msa0115780:intron | 40.0% |
| CTTTGTGAGTGGATATGAAG+AGG | - | chr1_3:34700018-34700037 | None:intergenic | 40.0% | |
| !! | TTTTGGGGAAGAGATCTTGA+TGG | - | chr1_3:34700062-34700081 | None:intergenic | 40.0% |
| ATCAAGATCTCTTCCCCAAA+AGG | + | chr1_3:34700061-34700080 | Msa0115780:CDS | 40.0% | |
| !! | AGCTTTAAGATATCTCCAGC+AGG | + | chr1_3:34700370-34700389 | Msa0115780:CDS | 40.0% |
| ATCAGCTCAAGTTATCTGGC+TGG | + | chr1_3:34699333-34699352 | Msa0115780:CDS | 45.0% | |
| TCAGCTCAAGTTATCTGGCT+GGG | + | chr1_3:34699334-34699353 | Msa0115780:CDS | 45.0% | |
| AAAGACGGTGGTTTAGCACA+TGG | + | chr1_3:34699568-34699587 | Msa0115780:CDS | 45.0% | |
| TTTGTTCCAAGTCTCACTGC+AGG | - | chr1_3:34699830-34699849 | None:intergenic | 45.0% | |
| AGTAAAAGGGCAATTGAGGC+TGG | + | chr1_3:34699862-34699881 | Msa0115780:CDS | 45.0% | |
| GTAAAAGGGCAATTGAGGCT+GGG | + | chr1_3:34699863-34699882 | Msa0115780:CDS | 45.0% | |
| TCCTCCAACCTGAAGAATTC+TGG | - | chr1_3:34699891-34699910 | None:intergenic | 45.0% | |
| TGTGAGTGGATATGAAGAGG+AGG | - | chr1_3:34700015-34700034 | None:intergenic | 45.0% | |
| !!! | CTGTGGATGGTTTTGACTTC+TGG | + | chr1_3:34700321-34700340 | Msa0115780:CDS | 45.0% |
| !! | TTTTCTGAAGGATAGCCTGC+TGG | - | chr1_3:34700388-34700407 | None:intergenic | 45.0% |
| ATCAGCTCAAGTTATCTGGC+TGG | + | chr1_3:34699333-34699352 | Msa0115780:CDS | 45.0% | |
| TCAGCTCAAGTTATCTGGCT+GGG | + | chr1_3:34699334-34699353 | Msa0115780:CDS | 45.0% | |
| AAAGACGGTGGTTTAGCACA+TGG | + | chr1_3:34699568-34699587 | Msa0115780:CDS | 45.0% | |
| TTTGTTCCAAGTCTCACTGC+AGG | - | chr1_3:34699830-34699849 | None:intergenic | 45.0% | |
| AGTAAAAGGGCAATTGAGGC+TGG | + | chr1_3:34699862-34699881 | Msa0115780:CDS | 45.0% | |
| GTAAAAGGGCAATTGAGGCT+GGG | + | chr1_3:34699863-34699882 | Msa0115780:CDS | 45.0% | |
| TCCTCCAACCTGAAGAATTC+TGG | - | chr1_3:34699891-34699910 | None:intergenic | 45.0% | |
| TGTGAGTGGATATGAAGAGG+AGG | - | chr1_3:34700015-34700034 | None:intergenic | 45.0% | |
| !!! | CTGTGGATGGTTTTGACTTC+TGG | + | chr1_3:34700321-34700340 | Msa0115780:CDS | 45.0% |
| !! | TTTTCTGAAGGATAGCCTGC+TGG | - | chr1_3:34700388-34700407 | None:intergenic | 45.0% |
| GGAGCCAGAATTCTTCAGGT+TGG | + | chr1_3:34699884-34699903 | Msa0115780:CDS | 50.0% | |
| !! | GCCAGAATTCTTCAGGTTGG+AGG | + | chr1_3:34699887-34699906 | Msa0115780:CDS | 50.0% |
| ACCACATCAGGTCCTATAGC+TGG | + | chr1_3:34699989-34700008 | Msa0115780:CDS | 50.0% | |
| ATGAAGAGGAGGCCAGCTAT+AGG | - | chr1_3:34700004-34700023 | None:intergenic | 50.0% | |
| GGAGCCAGAATTCTTCAGGT+TGG | + | chr1_3:34699884-34699903 | Msa0115780:CDS | 50.0% | |
| !! | GCCAGAATTCTTCAGGTTGG+AGG | + | chr1_3:34699887-34699906 | Msa0115780:CDS | 50.0% |
| ACCACATCAGGTCCTATAGC+TGG | + | chr1_3:34699989-34700008 | Msa0115780:CDS | 50.0% | |
| ATGAAGAGGAGGCCAGCTAT+AGG | - | chr1_3:34700004-34700023 | None:intergenic | 50.0% | |
| GCTGGGAGCCAGAATTCTTC+AGG | + | chr1_3:34699880-34699899 | Msa0115780:CDS | 55.0% | |
| GCCAGCTATAGGACCTGATG+TGG | - | chr1_3:34699993-34700012 | None:intergenic | 55.0% | |
| GCTGGGAGCCAGAATTCTTC+AGG | + | chr1_3:34699880-34699899 | Msa0115780:CDS | 55.0% | |
| GCCAGCTATAGGACCTGATG+TGG | - | chr1_3:34699993-34700012 | None:intergenic | 55.0% | |
| GCACATGGCGTCCGAGAGCA+TGG | + | chr1_3:34699583-34699602 | Msa0115780:CDS | 65.0% | |
| GCACATGGCGTCCGAGAGCA+TGG | + | chr1_3:34699583-34699602 | Msa0115780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 34699256 | 34700486 | 34699256 | ID=Msa0115780;Name=Msa0115780 |
| chr1_3 | mRNA | 34699256 | 34700486 | 34699256 | ID=Msa0115780-mRNA-1;Parent=Msa0115780;Name=Msa0115780-mRNA-1;_AED=0.28;_eAED=0.28;_QI=35|1|1|1|1|1|4|71|223 |
| chr1_3 | exon | 34699256 | 34699426 | 34699256 | ID=Msa0115780-mRNA-1:exon:11000;Parent=Msa0115780-mRNA-1 |
| chr1_3 | exon | 34699524 | 34699604 | 34699524 | ID=Msa0115780-mRNA-1:exon:11001;Parent=Msa0115780-mRNA-1 |
| chr1_3 | exon | 34699834 | 34700108 | 34699834 | ID=Msa0115780-mRNA-1:exon:11002;Parent=Msa0115780-mRNA-1 |
| chr1_3 | exon | 34700236 | 34700486 | 34700236 | ID=Msa0115780-mRNA-1:exon:11003;Parent=Msa0115780-mRNA-1 |
| chr1_3 | five_prime_UTR | 34699256 | 34699290 | 34699256 | ID=Msa0115780-mRNA-1:five_prime_utr;Parent=Msa0115780-mRNA-1 |
| chr1_3 | CDS | 34699291 | 34699426 | 34699291 | ID=Msa0115780-mRNA-1:cds;Parent=Msa0115780-mRNA-1 |
| chr1_3 | CDS | 34699524 | 34699604 | 34699524 | ID=Msa0115780-mRNA-1:cds;Parent=Msa0115780-mRNA-1 |
| chr1_3 | CDS | 34699834 | 34700108 | 34699834 | ID=Msa0115780-mRNA-1:cds;Parent=Msa0115780-mRNA-1 |
| chr1_3 | CDS | 34700236 | 34700415 | 34700236 | ID=Msa0115780-mRNA-1:cds;Parent=Msa0115780-mRNA-1 |
| chr1_3 | three_prime_UTR | 34700416 | 34700486 | 34700416 | ID=Msa0115780-mRNA-1:three_prime_utr;Parent=Msa0115780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
