AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0115740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115740 MtrunA17_Chr1g0212091 85.238 210 31 0 1 210 1 210 4.23e-133 373
Msa0115740 MtrunA17_Chr1g0162171 63.810 210 73 2 5 211 4 213 4.35e-92 269
Msa0115740 MtrunA17_Chr1g0212121 52.607 211 97 2 1 211 1 208 3.38e-72 218
Msa0115740 MtrunA17_Chr1g0212171 48.372 215 107 2 1 213 1 213 2.75e-68 209
Msa0115740 MtrunA17_Chr1g0212181 50.233 215 100 3 1 213 1 210 2.18e-66 204
Msa0115740 MtrunA17_Chr6g0481891 53.165 158 74 0 53 210 31 188 3.43e-56 177
Msa0115740 MtrunA17_Chr8g0388871 56.209 153 66 1 60 211 23 175 4.14e-56 176
Msa0115740 MtrunA17_Chr1g0212111 86.000 100 14 0 111 210 47 146 5.45e-50 160
Msa0115740 MtrunA17_Chr7g0251801 35.714 182 117 0 28 209 84 265 2.85e-39 136
Msa0115740 MtrunA17_Chr8g0367701 34.483 174 103 2 50 213 90 262 1.71e-34 124
Msa0115740 MtrunA17_Chr3g0133221 40.580 138 79 2 71 207 109 244 4.21e-33 119
Msa0115740 MtrunA17_Chr2g0315771 36.970 165 103 1 46 209 52 216 1.09e-28 107
Msa0115740 MtrunA17_Chr1g0212131 53.571 56 26 0 158 213 1 56 7.48e-17 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115740 AT5G08350.1 57.672 189 69 3 28 211 23 205 6.39e-73 221
Msa0115740 AT5G23370.1 53.081 211 94 1 1 211 1 206 1.26e-72 220
Msa0115740 AT5G23350.1 56.614 189 72 2 28 211 23 206 3.95e-70 213
Msa0115740 AT5G23360.1 50.000 212 91 3 1 211 1 198 1.02e-67 207
Msa0115740 AT4G01600.3 40.000 170 94 2 46 207 5 174 3.98e-40 136
Msa0115740 AT4G01600.1 37.000 200 117 3 16 207 15 213 6.11e-40 137
Msa0115740 AT5G13200.1 35.429 175 113 0 35 209 77 251 2.37e-38 134
Msa0115740 AT4G01600.2 36.923 195 119 3 16 207 15 208 1.07e-36 128
Msa0115740 AT1G28200.1 38.667 150 89 2 60 208 97 244 6.02e-34 122
Msa0115740 AT1G28200.2 38.667 150 89 2 60 208 97 244 6.02e-34 122
Msa0115740 AT2G22475.1 33.516 182 118 2 27 207 101 280 6.39e-33 120
Msa0115740 AT5G13200.2 32.576 132 89 0 35 166 77 208 1.63e-22 91.3
Msa0115740 AT4G40100.1 32.258 124 55 1 85 208 112 206 1.71e-18 80.9
Msa0115740 AT2G22475.2 29.268 123 87 0 27 149 101 223 6.48e-16 74.3

Find 53 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTCACAAAGTTGCTTTC+TGG 0.165974 1_3:+34681687 Msa0115740:CDS
TTGAGGAGCTCTTGTAATTT+TGG 0.202596 1_3:-34680896 None:intergenic
TTCCTTCATGAGCTACTTAA+TGG 0.213634 1_3:+34681024 Msa0115740:CDS
GCGTAGATGGTTTCGACTTC+TGG 0.218018 1_3:+34681942 Msa0115740:CDS
AAGATAACAGATACAGTAAA+AGG 0.228633 1_3:+34681509 Msa0115740:CDS
TTTACTGTATCTGTTATCTT+TGG 0.247894 1_3:-34681506 None:intergenic
TCCTCCAACTTGAATAATTC+TGG 0.255353 1_3:-34681549 None:intergenic
AGATACTTGGCTGATTCTTC+TGG 0.277973 1_3:+34681090 Msa0115740:CDS
ACTCTAATCAATTCTCCTTT+TGG 0.287784 1_3:-34681737 None:intergenic
ATGAGTCCTTGTAATCTAAA+TGG 0.292825 1_3:-34680870 None:intergenic
AGAAGGCTTCCTTGTGTAAC+TGG 0.299367 1_3:-34680971 None:intergenic
CTGACTAAGATGAACATGTT+TGG 0.338683 1_3:+34681261 Msa0115740:CDS
TGTTACTTATCAACCACATT+AGG 0.368586 1_3:+34681638 Msa0115740:CDS
AGGCTATTACCCTAGCTCAT+AGG 0.375912 1_3:+34682007 Msa0115740:exon
TGACTAAGATGAACATGTTT+GGG 0.379362 1_3:+34681262 Msa0115740:CDS
GATGAACATGTTTGGGAGAA+AGG 0.393124 1_3:+34681269 Msa0115740:CDS
ATTGATTAGAGTTCTCTATA+AGG 0.399862 1_3:+34681748 Msa0115740:CDS
GGCTATTACCCTAGCTCATA+GGG 0.410066 1_3:+34682008 Msa0115740:exon
ATGAACATGTTTGGGAGAAA+GGG 0.454867 1_3:+34681270 Msa0115740:CDS
AATTGATGAAGCAGAGAAGA+TGG 0.463997 1_3:-34682060 None:intergenic
ATCACCTCAACTCATTCAGT+TGG 0.473136 1_3:+34681054 Msa0115740:CDS
AGTAAAAGGGAAATTGAGGT+TGG 0.474450 1_3:+34681523 Msa0115740:CDS
ATAGAAATAGTCAGCGTAGA+TGG 0.474979 1_3:+34681929 Msa0115740:CDS
ATGAAGAGGAGGCCAGCTAT+AGG 0.476519 1_3:-34681662 None:intergenic
TCTGTTTGTTATCTTCAAGA+AGG 0.479636 1_3:-34680988 None:intergenic
AACTGGTGTTAAAATCTTTG+AGG 0.485021 1_3:-34680954 None:intergenic
CTGTAACCTGCAGTGAGACT+TGG 0.489945 1_3:+34681482 Msa0115740:intron
AGAAAACTTATATCTTCAGC+AGG 0.492693 1_3:+34681987 Msa0115740:CDS
GGAGCCAGAATTATTCAAGT+TGG 0.504215 1_3:+34681545 Msa0115740:CDS
GTATATATAAATGACTTAAG+AGG 0.511136 1_3:-34680839 None:intergenic
ATCAAGATCTCGTCACCAAA+AGG 0.523407 1_3:+34681722 Msa0115740:CDS
ACACACCCATTTAGATTACA+AGG 0.525937 1_3:+34680864 Msa0115740:five_prime_UTR
GCCAGAATTATTCAAGTTGG+AGG 0.527943 1_3:+34681548 Msa0115740:CDS
ATACAGTAAAAGGGAAATTG+AGG 0.533626 1_3:+34681519 Msa0115740:CDS
TCACCTCAACTCATTCAGTT+GGG 0.537734 1_3:+34681055 Msa0115740:CDS
TGAGTCCTTGTAATCTAAAT+GGG 0.539022 1_3:-34680869 None:intergenic
AGATAACAGATACAGTAAAA+GGG 0.540258 1_3:+34681510 Msa0115740:CDS
CTGATTACATGCCATGCTCT+CGG 0.547751 1_3:-34681314 None:intergenic
GTGCATGCAGTCCGAGAGCA+TGG 0.551141 1_3:+34681303 Msa0115740:CDS
CTAGCTTGTGAAAAGTATTG+AGG 0.551654 1_3:-34680913 None:intergenic
GTAAAAGGGAAATTGAGGTT+GGG 0.562042 1_3:+34681524 Msa0115740:CDS
ATGTTTGGGAGAAAGGGTGA+TGG 0.565214 1_3:+34681276 Msa0115740:CDS
TCCATTACAAAATCAAAGCA+AGG 0.583726 1_3:+34681126 Msa0115740:CDS
TTCCATTAAGTAGCTCATGA+AGG 0.584791 1_3:-34681026 None:intergenic
ACCACATTAGGTCCTATAGC+TGG 0.588201 1_3:+34681650 Msa0115740:CDS
TTGAGGATGTTGTTGTGCAA+AGG 0.596490 1_3:-34680937 None:intergenic
GAAGTCATCAAAGAGATACT+TGG 0.597294 1_3:+34681077 Msa0115740:CDS
CCAGAAAGCAACTTTGTGAG+TGG 0.608051 1_3:-34681687 None:intergenic
CTTTGTGAGTGGATATGAAG+AGG 0.608902 1_3:-34681676 None:intergenic
GCCAGCTATAGGACCTAATG+TGG 0.654715 1_3:-34681651 None:intergenic
TGTGAGTGGATATGAAGAGG+AGG 0.670894 1_3:-34681673 None:intergenic
CTTCCCAACTGAATGAGTTG+AGG 0.692685 1_3:-34681058 None:intergenic
GCTATTACCCTAGCTCATAG+GGG 0.697966 1_3:+34682009 Msa0115740:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAATTTAATTCATCA+TGG + chr1_3:34681203-34681222 Msa0115740:intron 10.0%
!! TAATATAATTTAATTCATCA+TGG + chr1_3:34681203-34681222 Msa0115740:intron 10.0%
!! GTATATATAAATGACTTAAG+AGG - chr1_3:34680842-34680861 None:intergenic 20.0%
!!! AAATACAGTTTTGTTAATGT+AGG - chr1_3:34681162-34681181 None:intergenic 20.0%
!!! ATGGTCATTTTTATATTTTC+AGG + chr1_3:34681222-34681241 Msa0115740:intron 20.0%
!! ATGATGTATAATTTGAACTT+TGG + chr1_3:34681407-34681426 Msa0115740:intron 20.0%
!!! AATGAAGTTTTAACTGATAA+TGG + chr1_3:34681446-34681465 Msa0115740:intron 20.0%
!!! CTTAATTTGTTTACTATTTC+AGG + chr1_3:34681835-34681854 Msa0115740:intron 20.0%
!! GTATATATAAATGACTTAAG+AGG - chr1_3:34680842-34680861 None:intergenic 20.0%
!!! AAATACAGTTTTGTTAATGT+AGG - chr1_3:34681162-34681181 None:intergenic 20.0%
!!! ATGGTCATTTTTATATTTTC+AGG + chr1_3:34681222-34681241 Msa0115740:intron 20.0%
!! ATGATGTATAATTTGAACTT+TGG + chr1_3:34681407-34681426 Msa0115740:intron 20.0%
!!! AATGAAGTTTTAACTGATAA+TGG + chr1_3:34681446-34681465 Msa0115740:intron 20.0%
!!! CTTAATTTGTTTACTATTTC+AGG + chr1_3:34681835-34681854 Msa0115740:intron 20.0%
! ATCAATGAAAAATTGAAGGT+TGG - chr1_3:34681353-34681372 None:intergenic 25.0%
! TGGAATCAATGAAAAATTGA+AGG - chr1_3:34681357-34681376 None:intergenic 25.0%
! AATTATACATCATAGCAGTT+TGG - chr1_3:34681400-34681419 None:intergenic 25.0%
! TTTACTGTATCTGTTATCTT+TGG - chr1_3:34681509-34681528 None:intergenic 25.0%
! AAGATAACAGATACAGTAAA+AGG + chr1_3:34681509-34681528 Msa0115740:CDS 25.0%
! AGATAACAGATACAGTAAAA+GGG + chr1_3:34681510-34681529 Msa0115740:CDS 25.0%
! ATTGATTAGAGTTCTCTATA+AGG + chr1_3:34681748-34681767 Msa0115740:CDS 25.0%
! AAGTGTGAAGAAAAGATAAA+AGG - chr1_3:34681818-34681837 None:intergenic 25.0%
!! ATTTCTATGTACTTTTCTGA+AGG - chr1_3:34681917-34681936 None:intergenic 25.0%
! ATCAATGAAAAATTGAAGGT+TGG - chr1_3:34681353-34681372 None:intergenic 25.0%
! TGGAATCAATGAAAAATTGA+AGG - chr1_3:34681357-34681376 None:intergenic 25.0%
! AATTATACATCATAGCAGTT+TGG - chr1_3:34681400-34681419 None:intergenic 25.0%
! TTTACTGTATCTGTTATCTT+TGG - chr1_3:34681509-34681528 None:intergenic 25.0%
! AAGATAACAGATACAGTAAA+AGG + chr1_3:34681509-34681528 Msa0115740:CDS 25.0%
! AGATAACAGATACAGTAAAA+GGG + chr1_3:34681510-34681529 Msa0115740:CDS 25.0%
! ATTGATTAGAGTTCTCTATA+AGG + chr1_3:34681748-34681767 Msa0115740:CDS 25.0%
! AAGTGTGAAGAAAAGATAAA+AGG - chr1_3:34681818-34681837 None:intergenic 25.0%
!! ATTTCTATGTACTTTTCTGA+AGG - chr1_3:34681917-34681936 None:intergenic 25.0%
TGAGTCCTTGTAATCTAAAT+GGG - chr1_3:34680872-34680891 None:intergenic 30.0%
ATGAGTCCTTGTAATCTAAA+TGG - chr1_3:34680873-34680892 None:intergenic 30.0%
! AACTGGTGTTAAAATCTTTG+AGG - chr1_3:34680957-34680976 None:intergenic 30.0%
!! ATTTTAACACCAGTTACACA+AGG + chr1_3:34680962-34680981 Msa0115740:five_prime_UTR 30.0%
!! TCTGTTTGTTATCTTCAAGA+AGG - chr1_3:34680991-34681010 None:intergenic 30.0%
TCCATTACAAAATCAAAGCA+AGG + chr1_3:34681126-34681145 Msa0115740:CDS 30.0%
!! ACCTTGCTTTGATTTTGTAA+TGG - chr1_3:34681130-34681149 None:intergenic 30.0%
TGACTAAGATGAACATGTTT+GGG + chr1_3:34681262-34681281 Msa0115740:CDS 30.0%
AAACTACTATACAATGCTCT+TGG - chr1_3:34681377-34681396 None:intergenic 30.0%
ATACAGTAAAAGGGAAATTG+AGG + chr1_3:34681519-34681538 Msa0115740:CDS 30.0%
! TGTTACTTATCAACCACATT+AGG + chr1_3:34681638-34681657 Msa0115740:CDS 30.0%
! ACTCTAATCAATTCTCCTTT+TGG - chr1_3:34681740-34681759 None:intergenic 30.0%
AGAAAACTTATATCTTCAGC+AGG + chr1_3:34681987-34682006 Msa0115740:CDS 30.0%
TGAGTCCTTGTAATCTAAAT+GGG - chr1_3:34680872-34680891 None:intergenic 30.0%
ATGAGTCCTTGTAATCTAAA+TGG - chr1_3:34680873-34680892 None:intergenic 30.0%
! AACTGGTGTTAAAATCTTTG+AGG - chr1_3:34680957-34680976 None:intergenic 30.0%
!! ATTTTAACACCAGTTACACA+AGG + chr1_3:34680962-34680981 Msa0115740:five_prime_UTR 30.0%
!! TCTGTTTGTTATCTTCAAGA+AGG - chr1_3:34680991-34681010 None:intergenic 30.0%
TCCATTACAAAATCAAAGCA+AGG + chr1_3:34681126-34681145 Msa0115740:CDS 30.0%
!! ACCTTGCTTTGATTTTGTAA+TGG - chr1_3:34681130-34681149 None:intergenic 30.0%
TGACTAAGATGAACATGTTT+GGG + chr1_3:34681262-34681281 Msa0115740:CDS 30.0%
AAACTACTATACAATGCTCT+TGG - chr1_3:34681377-34681396 None:intergenic 30.0%
ATACAGTAAAAGGGAAATTG+AGG + chr1_3:34681519-34681538 Msa0115740:CDS 30.0%
! TGTTACTTATCAACCACATT+AGG + chr1_3:34681638-34681657 Msa0115740:CDS 30.0%
! ACTCTAATCAATTCTCCTTT+TGG - chr1_3:34681740-34681759 None:intergenic 30.0%
AGAAAACTTATATCTTCAGC+AGG + chr1_3:34681987-34682006 Msa0115740:CDS 30.0%
!!! TGTCACTGTTGACTTTTTGT+GGG - chr1_3:34680813-34680832 None:intergenic 35.0%
!!! ATGTCACTGTTGACTTTTTG+TGG - chr1_3:34680814-34680833 None:intergenic 35.0%
ACACACCCATTTAGATTACA+AGG + chr1_3:34680864-34680883 Msa0115740:five_prime_UTR 35.0%
! TTGAGGAGCTCTTGTAATTT+TGG - chr1_3:34680899-34680918 None:intergenic 35.0%
!! CTAGCTTGTGAAAAGTATTG+AGG - chr1_3:34680916-34680935 None:intergenic 35.0%
TTCCTTCATGAGCTACTTAA+TGG + chr1_3:34681024-34681043 Msa0115740:CDS 35.0%
TTCCATTAAGTAGCTCATGA+AGG - chr1_3:34681029-34681048 None:intergenic 35.0%
GAAGTCATCAAAGAGATACT+TGG + chr1_3:34681077-34681096 Msa0115740:CDS 35.0%
CTGACTAAGATGAACATGTT+TGG + chr1_3:34681261-34681280 Msa0115740:CDS 35.0%
ATGAACATGTTTGGGAGAAA+GGG + chr1_3:34681270-34681289 Msa0115740:CDS 35.0%
AATTTGAACTTTGGCGTGAT+TGG + chr1_3:34681416-34681435 Msa0115740:intron 35.0%
AGTAAAAGGGAAATTGAGGT+TGG + chr1_3:34681523-34681542 Msa0115740:CDS 35.0%
GTAAAAGGGAAATTGAGGTT+GGG + chr1_3:34681524-34681543 Msa0115740:CDS 35.0%
TCCTCCAACTTGAATAATTC+TGG - chr1_3:34681552-34681571 None:intergenic 35.0%
!! AAGGAATGAGAGCATTTACA+TGG - chr1_3:34681799-34681818 None:intergenic 35.0%
! ACATGCTGTATCTTTTCATG+TGG - chr1_3:34681869-34681888 None:intergenic 35.0%
!!! GCTTCTTCACATTTTGACTT+TGG - chr1_3:34681895-34681914 None:intergenic 35.0%
ATAGAAATAGTCAGCGTAGA+TGG + chr1_3:34681929-34681948 Msa0115740:CDS 35.0%
!!! TGTCACTGTTGACTTTTTGT+GGG - chr1_3:34680813-34680832 None:intergenic 35.0%
!!! ATGTCACTGTTGACTTTTTG+TGG - chr1_3:34680814-34680833 None:intergenic 35.0%
ACACACCCATTTAGATTACA+AGG + chr1_3:34680864-34680883 Msa0115740:five_prime_UTR 35.0%
! TTGAGGAGCTCTTGTAATTT+TGG - chr1_3:34680899-34680918 None:intergenic 35.0%
!! CTAGCTTGTGAAAAGTATTG+AGG - chr1_3:34680916-34680935 None:intergenic 35.0%
TTCCTTCATGAGCTACTTAA+TGG + chr1_3:34681024-34681043 Msa0115740:CDS 35.0%
TTCCATTAAGTAGCTCATGA+AGG - chr1_3:34681029-34681048 None:intergenic 35.0%
GAAGTCATCAAAGAGATACT+TGG + chr1_3:34681077-34681096 Msa0115740:CDS 35.0%
CTGACTAAGATGAACATGTT+TGG + chr1_3:34681261-34681280 Msa0115740:CDS 35.0%
ATGAACATGTTTGGGAGAAA+GGG + chr1_3:34681270-34681289 Msa0115740:CDS 35.0%
AATTTGAACTTTGGCGTGAT+TGG + chr1_3:34681416-34681435 Msa0115740:intron 35.0%
AGTAAAAGGGAAATTGAGGT+TGG + chr1_3:34681523-34681542 Msa0115740:CDS 35.0%
GTAAAAGGGAAATTGAGGTT+GGG + chr1_3:34681524-34681543 Msa0115740:CDS 35.0%
TCCTCCAACTTGAATAATTC+TGG - chr1_3:34681552-34681571 None:intergenic 35.0%
!! AAGGAATGAGAGCATTTACA+TGG - chr1_3:34681799-34681818 None:intergenic 35.0%
! ACATGCTGTATCTTTTCATG+TGG - chr1_3:34681869-34681888 None:intergenic 35.0%
!!! GCTTCTTCACATTTTGACTT+TGG - chr1_3:34681895-34681914 None:intergenic 35.0%
ATAGAAATAGTCAGCGTAGA+TGG + chr1_3:34681929-34681948 Msa0115740:CDS 35.0%
TTGAGGATGTTGTTGTGCAA+AGG - chr1_3:34680940-34680959 None:intergenic 40.0%
ATCACCTCAACTCATTCAGT+TGG + chr1_3:34681054-34681073 Msa0115740:CDS 40.0%
TCACCTCAACTCATTCAGTT+GGG + chr1_3:34681055-34681074 Msa0115740:CDS 40.0%
! AGATACTTGGCTGATTCTTC+TGG + chr1_3:34681090-34681109 Msa0115740:CDS 40.0%
GATGAACATGTTTGGGAGAA+AGG + chr1_3:34681269-34681288 Msa0115740:CDS 40.0%
GGAGCCAGAATTATTCAAGT+TGG + chr1_3:34681545-34681564 Msa0115740:CDS 40.0%
!! GCCAGAATTATTCAAGTTGG+AGG + chr1_3:34681548-34681567 Msa0115740:CDS 40.0%
! CAACTTTTCAGCGTACAAGA+CGG + chr1_3:34681590-34681609 Msa0115740:CDS 40.0%
! AACTTTTCAGCGTACAAGAC+GGG + chr1_3:34681591-34681610 Msa0115740:CDS 40.0%
CTTTGTGAGTGGATATGAAG+AGG - chr1_3:34681679-34681698 None:intergenic 40.0%
!!! TTTTGGTGACGAGATCTTGA+TGG - chr1_3:34681723-34681742 None:intergenic 40.0%
ATCAAGATCTCGTCACCAAA+AGG + chr1_3:34681722-34681741 Msa0115740:CDS 40.0%
!!! TGGTTTCGACTTCTGGTTTT+TGG + chr1_3:34681949-34681968 Msa0115740:CDS 40.0%
!!! GGTTTCGACTTCTGGTTTTT+GGG + chr1_3:34681950-34681969 Msa0115740:CDS 40.0%
! GAATTTTCCCCTATGAGCTA+GGG - chr1_3:34682019-34682038 None:intergenic 40.0%
! AGAATTTTCCCCTATGAGCT+AGG - chr1_3:34682020-34682039 None:intergenic 40.0%
TTGAGGATGTTGTTGTGCAA+AGG - chr1_3:34680940-34680959 None:intergenic 40.0%
ATCACCTCAACTCATTCAGT+TGG + chr1_3:34681054-34681073 Msa0115740:CDS 40.0%
TCACCTCAACTCATTCAGTT+GGG + chr1_3:34681055-34681074 Msa0115740:CDS 40.0%
! AGATACTTGGCTGATTCTTC+TGG + chr1_3:34681090-34681109 Msa0115740:CDS 40.0%
GATGAACATGTTTGGGAGAA+AGG + chr1_3:34681269-34681288 Msa0115740:CDS 40.0%
GGAGCCAGAATTATTCAAGT+TGG + chr1_3:34681545-34681564 Msa0115740:CDS 40.0%
!! GCCAGAATTATTCAAGTTGG+AGG + chr1_3:34681548-34681567 Msa0115740:CDS 40.0%
! CAACTTTTCAGCGTACAAGA+CGG + chr1_3:34681590-34681609 Msa0115740:CDS 40.0%
! AACTTTTCAGCGTACAAGAC+GGG + chr1_3:34681591-34681610 Msa0115740:CDS 40.0%
CTTTGTGAGTGGATATGAAG+AGG - chr1_3:34681679-34681698 None:intergenic 40.0%
!!! TTTTGGTGACGAGATCTTGA+TGG - chr1_3:34681723-34681742 None:intergenic 40.0%
ATCAAGATCTCGTCACCAAA+AGG + chr1_3:34681722-34681741 Msa0115740:CDS 40.0%
!!! TGGTTTCGACTTCTGGTTTT+TGG + chr1_3:34681949-34681968 Msa0115740:CDS 40.0%
!!! GGTTTCGACTTCTGGTTTTT+GGG + chr1_3:34681950-34681969 Msa0115740:CDS 40.0%
! GAATTTTCCCCTATGAGCTA+GGG - chr1_3:34682019-34682038 None:intergenic 40.0%
! AGAATTTTCCCCTATGAGCT+AGG - chr1_3:34682020-34682039 None:intergenic 40.0%
AGAAGGCTTCCTTGTGTAAC+TGG - chr1_3:34680974-34680993 None:intergenic 45.0%
CTTCCCAACTGAATGAGTTG+AGG - chr1_3:34681061-34681080 None:intergenic 45.0%
ATGTTTGGGAGAAAGGGTGA+TGG + chr1_3:34681276-34681295 Msa0115740:CDS 45.0%
CTGATTACATGCCATGCTCT+CGG - chr1_3:34681317-34681336 None:intergenic 45.0%
! ACTTTTCAGCGTACAAGACG+GGG + chr1_3:34681592-34681611 Msa0115740:CDS 45.0%
ACCACATTAGGTCCTATAGC+TGG + chr1_3:34681650-34681669 Msa0115740:CDS 45.0%
TGTGAGTGGATATGAAGAGG+AGG - chr1_3:34681676-34681695 None:intergenic 45.0%
CCAGAAAGCAACTTTGTGAG+TGG - chr1_3:34681690-34681709 None:intergenic 45.0%
! CCACTCACAAAGTTGCTTTC+TGG + chr1_3:34681687-34681706 Msa0115740:CDS 45.0%
AGGCTATTACCCTAGCTCAT+AGG + chr1_3:34682007-34682026 Msa0115740:exon 45.0%
GGCTATTACCCTAGCTCATA+GGG + chr1_3:34682008-34682027 Msa0115740:exon 45.0%
GCTATTACCCTAGCTCATAG+GGG + chr1_3:34682009-34682028 Msa0115740:exon 45.0%
AGAAGGCTTCCTTGTGTAAC+TGG - chr1_3:34680974-34680993 None:intergenic 45.0%
CTTCCCAACTGAATGAGTTG+AGG - chr1_3:34681061-34681080 None:intergenic 45.0%
ATGTTTGGGAGAAAGGGTGA+TGG + chr1_3:34681276-34681295 Msa0115740:CDS 45.0%
CTGATTACATGCCATGCTCT+CGG - chr1_3:34681317-34681336 None:intergenic 45.0%
! ACTTTTCAGCGTACAAGACG+GGG + chr1_3:34681592-34681611 Msa0115740:CDS 45.0%
ACCACATTAGGTCCTATAGC+TGG + chr1_3:34681650-34681669 Msa0115740:CDS 45.0%
TGTGAGTGGATATGAAGAGG+AGG - chr1_3:34681676-34681695 None:intergenic 45.0%
CCAGAAAGCAACTTTGTGAG+TGG - chr1_3:34681690-34681709 None:intergenic 45.0%
! CCACTCACAAAGTTGCTTTC+TGG + chr1_3:34681687-34681706 Msa0115740:CDS 45.0%
AGGCTATTACCCTAGCTCAT+AGG + chr1_3:34682007-34682026 Msa0115740:exon 45.0%
GGCTATTACCCTAGCTCATA+GGG + chr1_3:34682008-34682027 Msa0115740:exon 45.0%
GCTATTACCCTAGCTCATAG+GGG + chr1_3:34682009-34682028 Msa0115740:exon 45.0%
!! TGAATTAAATTATATTAAAT+TGG - chr1_3:34681200-34681219 None:intergenic 5.0%
!! TGAATTAAATTATATTAAAT+TGG - chr1_3:34681200-34681219 None:intergenic 5.0%
CTGTAACCTGCAGTGAGACT+TGG + chr1_3:34681482-34681501 Msa0115740:intron 50.0%
TTTGGTCCAAGTCTCACTGC+AGG - chr1_3:34681491-34681510 None:intergenic 50.0%
GCCAGCTATAGGACCTAATG+TGG - chr1_3:34681654-34681673 None:intergenic 50.0%
ATGAAGAGGAGGCCAGCTAT+AGG - chr1_3:34681665-34681684 None:intergenic 50.0%
GCGTAGATGGTTTCGACTTC+TGG + chr1_3:34681942-34681961 Msa0115740:CDS 50.0%
CTGTAACCTGCAGTGAGACT+TGG + chr1_3:34681482-34681501 Msa0115740:intron 50.0%
TTTGGTCCAAGTCTCACTGC+AGG - chr1_3:34681491-34681510 None:intergenic 50.0%
GCCAGCTATAGGACCTAATG+TGG - chr1_3:34681654-34681673 None:intergenic 50.0%
ATGAAGAGGAGGCCAGCTAT+AGG - chr1_3:34681665-34681684 None:intergenic 50.0%
GCGTAGATGGTTTCGACTTC+TGG + chr1_3:34681942-34681961 Msa0115740:CDS 50.0%
GTGCATGCAGTCCGAGAGCA+TGG + chr1_3:34681303-34681322 Msa0115740:CDS 60.0%
GTGCATGCAGTCCGAGAGCA+TGG + chr1_3:34681303-34681322 Msa0115740:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 34680800 34682068 34680800 ID=Msa0115740;Name=Msa0115740
chr1_3 mRNA 34680800 34682068 34680800 ID=Msa0115740-mRNA-1;Parent=Msa0115740;Name=Msa0115740-mRNA-1;_AED=0.17;_eAED=0.17;_QI=212|0.66|0.5|1|1|1|4|47|218
chr1_3 exon 34680800 34681147 34680800 ID=Msa0115740-mRNA-1:exon:10940;Parent=Msa0115740-mRNA-1
chr1_3 exon 34681244 34681324 34681244 ID=Msa0115740-mRNA-1:exon:10941;Parent=Msa0115740-mRNA-1
chr1_3 exon 34681495 34681769 34681495 ID=Msa0115740-mRNA-1:exon:10942;Parent=Msa0115740-mRNA-1
chr1_3 exon 34681857 34682068 34681857 ID=Msa0115740-mRNA-1:exon:10943;Parent=Msa0115740-mRNA-1
chr1_3 five_prime_UTR 34680800 34681011 34680800 ID=Msa0115740-mRNA-1:five_prime_utr;Parent=Msa0115740-mRNA-1
chr1_3 CDS 34681012 34681147 34681012 ID=Msa0115740-mRNA-1:cds;Parent=Msa0115740-mRNA-1
chr1_3 CDS 34681244 34681324 34681244 ID=Msa0115740-mRNA-1:cds;Parent=Msa0115740-mRNA-1
chr1_3 CDS 34681495 34681769 34681495 ID=Msa0115740-mRNA-1:cds;Parent=Msa0115740-mRNA-1
chr1_3 CDS 34681857 34682021 34681857 ID=Msa0115740-mRNA-1:cds;Parent=Msa0115740-mRNA-1
chr1_3 three_prime_UTR 34682022 34682068 34682022 ID=Msa0115740-mRNA-1:three_prime_utr;Parent=Msa0115740-mRNA-1
Gene Sequence

>Msa0115740

ATGAAGACGTCATTCCTTCATGAGCTACTTAATGGAATTTCTATCACCTCAACTCATTCAGTTGGGAAGTCATCAAAGAGATACTTGGCTGATTCTTCTGGCATATACAACAAATCCATTACAAAATCAAAGCAAGGTAAATTTAATTCAGTTCTGACTAAGATGAACATGTTTGGGAGAAAGGGTGATGGTTTTGTGCATGCAGTCCGAGAGCATGTGAGACTTGGACCAAAGATAACAGATACAGTAAAAGGGAAATTGAGGTTGGGAGCCAGAATTATTCAAGTTGGAGGAATAGAGAAAGTGTTTATGCAACTTTTCAGCGTACAAGACGGGGAGAAGCTGTTGAAAGCGTCACAATGTTACTTATCAACCACATTAGGTCCTATAGCTGGCCTCCTCTTCATATCCACTCACAAAGTTGCTTTCTGGAGTGACAAATCCATCAAGATCTCGTCACCAAAAGGAGAATTGATTAGAGTTCTCTATAAGGTCTCTATTCCACATGAAAAGATACAGCATGTCAACCAAAGTCAAAATGTGAAGAAGCCTTCAGAAAAGTACATAGAAATAGTCAGCGTAGATGGTTTCGACTTCTGGTTTTTGGGTTTCTTTAATTATAAGAAAACTTATATCTTCAGCAGGCTATTACCCTAG

Protein sequence

>Msa0115740

MKTSFLHELLNGISITSTHSVGKSSKRYLADSSGIYNKSITKSKQGKFNSVLTKMNMFGRKGDGFVHAVREHVRLGPKITDTVKGKLRLGARIIQVGGIEKVFMQLFSVQDGEKLLKASQCYLSTTLGPIAGLLFISTHKVAFWSDKSIKISSPKGELIRVLYKVSIPHEKIQHVNQSQNVKKPSEKYIEIVSVDGFDFWFLGFFNYKKTYIFSRLLP*