AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154060 MtrunA17_Chr7g0244961 96.889 225 7 0 1 225 38 262 9.17e-163 449
Msa1154060 MtrunA17_Chr1g0147511 39.234 209 124 1 6 211 7 215 9.84e-47 154
Msa1154060 MtrunA17_Chr3g0139261 38.756 209 125 1 6 211 7 215 1.63e-45 151
Msa1154060 MtrunA17_Chr1g0188581 36.493 211 129 1 6 211 7 217 6.01e-43 145
Msa1154060 MtrunA17_Chr6g0477471 34.928 209 133 1 6 211 7 215 1.57e-36 128
Msa1154060 MtrunA17_Chr6g0477681 32.075 212 141 1 3 211 4 215 8.93e-35 123
Msa1154060 MtrunA17_Chr6g0477661 30.973 226 148 2 3 225 4 224 5.54e-34 121
Msa1154060 MtrunA17_Chr5g0428761 27.570 214 145 2 7 211 6 218 2.42e-26 102
Msa1154060 MtrunA17_Chr8g0392461 32.487 197 121 3 7 198 6 195 2.65e-26 101
Msa1154060 MtrunA17_Chr8g0392481 34.940 83 54 0 1 83 1 83 7.35e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154060 AT5G43180.1 48.684 228 99 2 1 210 1 228 1.91e-62 195
Msa1154060 AT4G31330.1 37.383 214 125 2 6 210 7 220 5.29e-42 142
Msa1154060 AT5G10580.3 34.649 228 138 1 3 219 4 231 1.41e-40 139
Msa1154060 AT5G10580.1 34.649 228 138 1 3 219 4 231 2.15e-40 139
Msa1154060 AT5G10580.4 34.649 228 138 1 3 219 4 231 2.15e-40 139
Msa1154060 AT5G24790.1 32.314 229 146 2 6 225 7 235 3.57e-29 109
Msa1154060 AT5G24600.2 32.420 219 131 3 6 209 5 221 2.02e-28 107
Msa1154060 AT5G24600.1 32.420 219 131 3 6 209 5 221 2.12e-28 107
Msa1154060 AT5G10580.2 31.285 179 112 1 3 170 4 182 5.25e-24 95.1
Msa1154060 AT3G18215.1 28.155 206 145 1 7 209 7 212 4.64e-20 85.9
Msa1154060 AT5G46060.1 26.341 205 150 1 6 209 9 213 1.17e-13 68.6

Find 53 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACAAAGTGTATTGGAAAA+AGG 0.170764 7_4:+41413275 Msa1154060:CDS
GATGGGAGAAGGTATTTATT+TGG 0.189582 7_4:+41412282 Msa1154060:exon
AAACCTTCACGCACAACTTA+TGG 0.244506 7_4:+41412379 Msa1154060:CDS
AACCCCTAAGGCCAAAATTT+AGG 0.268543 7_4:+41412228 Msa1154060:five_prime_UTR
TTGCTATTCCTTTGATGCTT+TGG 0.275415 7_4:+41413336 Msa1154060:CDS
GCCTTAGGGGTTGGTTTGGT+TGG 0.308087 7_4:-41412217 None:intergenic
TTTGTGACCCTGTGGTAATT+TGG 0.309974 7_4:-41413432 None:intergenic
TTGTGACCCTGTGGTAATTT+GGG 0.317101 7_4:-41413431 None:intergenic
GCGTGAAGGTTTGTTCTTGA+TGG 0.331854 7_4:-41412368 None:intergenic
GATGCAGGGTGATGATAAAA+AGG 0.334165 7_4:+41412956 Msa1154060:intron
TTCAGCATCAATTTGTTTGT+TGG 0.346009 7_4:+41413160 Msa1154060:CDS
CCTTTGATGCTTTGGATGTT+GGG 0.346934 7_4:+41413344 Msa1154060:CDS
TCCTTTGATGCTTTGGATGT+TGG 0.347676 7_4:+41413343 Msa1154060:CDS
TTTGGCCTTAGGGGTTGGTT+TGG 0.368270 7_4:-41412221 None:intergenic
GAAGTGTTCCATGTGTGAAT+TGG 0.394861 7_4:+41413543 Msa1154060:three_prime_UTR
CTTATGGAATTGATAAGTTA+AGG 0.396057 7_4:+41412395 Msa1154060:CDS
AAGGCTCAAAGGGACTAATA+TGG 0.413031 7_4:-41412308 None:intergenic
ATTGGGATTACACAGTATAT+TGG 0.414048 7_4:+41413561 Msa1154060:three_prime_UTR
TGCTTCATCACTAAGGAAGA+TGG 0.429291 7_4:+41412264 Msa1154060:exon
ATAAGTTAAGGAGGACTACT+TGG 0.433159 7_4:+41412407 Msa1154060:CDS
TTGGGGTCTTAACGTAAATC+AGG 0.440650 7_4:+41412426 Msa1154060:CDS
AAGTGTTCCATGTGTGAATT+GGG 0.444471 7_4:+41413544 Msa1154060:three_prime_UTR
ATGCTGAACTATACTTCAAA+AGG 0.446305 7_4:-41413145 None:intergenic
GGTAAATTATTGTAATGAAA+AGG 0.472611 7_4:-41412327 None:intergenic
TTATGCAGCTCAATGGCCAT+TGG 0.475003 7_4:+41413191 Msa1154060:CDS
TTGTAATGAAAAGGCTCAAA+GGG 0.475855 7_4:-41412318 None:intergenic
TAGTTTCTTATGCAGCTCAA+TGG 0.478884 7_4:+41413184 Msa1154060:CDS
CCCAACATCCAAAGCATCAA+AGG 0.490638 7_4:-41413344 None:intergenic
TAAAATAACCAACCTAGCTA+TGG 0.509365 7_4:+41413468 Msa1154060:exon
TAAGTTAAGGAGGACTACTT+GGG 0.526892 7_4:+41412408 Msa1154060:CDS
AGTATATTGGTGGTTGAAAG+TGG 0.527619 7_4:+41413574 Msa1154060:three_prime_UTR
GGGATTACACAGTATATTGG+TGG 0.538985 7_4:+41413564 Msa1154060:three_prime_UTR
TGCATCAATTAGAAATCCAA+TGG 0.540827 7_4:-41413207 None:intergenic
CAACAAACAAACCAAAGCTA+TGG 0.541351 7_4:-41413390 None:intergenic
TGGTTACACACAAAGTGTAT+TGG 0.549311 7_4:+41413268 Msa1154060:CDS
TTATGTCCCCAAATTACCAC+AGG 0.550867 7_4:+41413424 Msa1154060:CDS
GCTTCATCACTAAGGAAGAT+GGG 0.552849 7_4:+41412265 Msa1154060:exon
TATAACAATTCTTGTAAACA+TGG 0.567578 7_4:+41413037 Msa1154060:CDS
ATTGTAATGAAAAGGCTCAA+AGG 0.571422 7_4:-41412319 None:intergenic
ACCAACCAAACCAACCCCTA+AGG 0.573569 7_4:+41412216 Msa1154060:five_prime_UTR
TATAGTTGCTGTGAGTATTG+TGG 0.578207 7_4:-41413018 None:intergenic
ATTCCATAAGTTGTGCGTGA+AGG 0.578392 7_4:-41412382 None:intergenic
CAAACAAACCAAAGCTATGG+AGG 0.579997 7_4:-41413387 None:intergenic
GGTCATAAGAGTGTTCCTCA+TGG 0.580413 7_4:-41412997 None:intergenic
TCACTAAGGAAGATGGGAGA+AGG 0.612483 7_4:+41412271 Msa1154060:exon
TGTGACCCTGTGGTAATTTG+GGG 0.624411 7_4:-41413430 None:intergenic
ATGGAATTGATAAGTTAAGG+AGG 0.638780 7_4:+41412398 Msa1154060:CDS
GTGTAATCCCAATTCACACA+TGG 0.668299 7_4:-41413551 None:intergenic
AAGTTAAGGAGGACTACTTG+GGG 0.675885 7_4:+41412409 Msa1154060:CDS
TGCTATGTGTACAAACCATG+AGG 0.692474 7_4:+41412982 Msa1154060:CDS
TGGTGTAGCAGAGAAAAGCA+TGG 0.714429 7_4:-41412348 None:intergenic
TATGTCCCCAAATTACCACA+GGG 0.750957 7_4:+41413425 Msa1154060:CDS
GTACATCGTTTGTGACCCTG+TGG 0.751188 7_4:-41413440 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAACCTAAATTT+TGG - chr7_4:41412242-41412261 None:intergenic 10.0%
!!! AAAAAAAAAAACCTAAATTT+TGG - chr7_4:41412242-41412261 None:intergenic 10.0%
!! TTAAAAAAAATACTAATGCA+TGG + chr7_4:41412860-41412879 Msa1154060:intron 15.0%
!!! AATTTTTTGATGAATTCTTA+TGG + chr7_4:41413230-41413249 Msa1154060:CDS 15.0%
!! TTAAAAAAAATACTAATGCA+TGG + chr7_4:41412860-41412879 Msa1154060:intron 15.0%
!!! AATTTTTTGATGAATTCTTA+TGG + chr7_4:41413230-41413249 Msa1154060:CDS 15.0%
!! GGTAAATTATTGTAATGAAA+AGG - chr7_4:41412330-41412349 None:intergenic 20.0%
!! ATTGATGAGTAAAATTGATT+TGG + chr7_4:41412493-41412512 Msa1154060:intron 20.0%
!!! TTCATCTACAATCAATTTTT+AGG + chr7_4:41412591-41412610 Msa1154060:intron 20.0%
!! AATATTTGAAAACAGGAAAT+CGG - chr7_4:41412654-41412673 None:intergenic 20.0%
!! ATGTGAAAATATTTGAAAAC+AGG - chr7_4:41412661-41412680 None:intergenic 20.0%
!!! AATTGTTTTTTAGAAATCAG+AGG + chr7_4:41412748-41412767 Msa1154060:intron 20.0%
!!! TTAGTATTTTTTTTAACTCG+TGG - chr7_4:41412856-41412875 None:intergenic 20.0%
!! TATAACAATTCTTGTAAACA+TGG + chr7_4:41413037-41413056 Msa1154060:CDS 20.0%
!! GGTAAATTATTGTAATGAAA+AGG - chr7_4:41412330-41412349 None:intergenic 20.0%
!! ATTGATGAGTAAAATTGATT+TGG + chr7_4:41412493-41412512 Msa1154060:intron 20.0%
!!! TTCATCTACAATCAATTTTT+AGG + chr7_4:41412591-41412610 Msa1154060:intron 20.0%
!! AATATTTGAAAACAGGAAAT+CGG - chr7_4:41412654-41412673 None:intergenic 20.0%
!! ATGTGAAAATATTTGAAAAC+AGG - chr7_4:41412661-41412680 None:intergenic 20.0%
!!! AATTGTTTTTTAGAAATCAG+AGG + chr7_4:41412748-41412767 Msa1154060:intron 20.0%
!!! TTAGTATTTTTTTTAACTCG+TGG - chr7_4:41412856-41412875 None:intergenic 20.0%
!! TATAACAATTCTTGTAAACA+TGG + chr7_4:41413037-41413056 Msa1154060:CDS 20.0%
! CTTATGGAATTGATAAGTTA+AGG + chr7_4:41412395-41412414 Msa1154060:CDS 25.0%
!! AAACTTTGAAAACCGAAAAT+AGG + chr7_4:41412682-41412701 Msa1154060:intron 25.0%
!! CCATATTTTCAACCTATTTT+CGG - chr7_4:41412697-41412716 None:intergenic 25.0%
! TAGTATATTTCCTCATGATT+TGG + chr7_4:41412886-41412905 Msa1154060:intron 25.0%
! CTTATGGAATTGATAAGTTA+AGG + chr7_4:41412395-41412414 Msa1154060:CDS 25.0%
!! AAACTTTGAAAACCGAAAAT+AGG + chr7_4:41412682-41412701 Msa1154060:intron 25.0%
!! CCATATTTTCAACCTATTTT+CGG - chr7_4:41412697-41412716 None:intergenic 25.0%
! TAGTATATTTCCTCATGATT+TGG + chr7_4:41412886-41412905 Msa1154060:intron 25.0%
!!! AAACCTAAATTTTGGCCTTA+GGG - chr7_4:41412234-41412253 None:intergenic 30.0%
!! AAAACCTAAATTTTGGCCTT+AGG - chr7_4:41412235-41412254 None:intergenic 30.0%
! TTTTTCTTGCTTCATCACTA+AGG + chr7_4:41412257-41412276 Msa1154060:five_prime_UTR 30.0%
TTGTAATGAAAAGGCTCAAA+GGG - chr7_4:41412321-41412340 None:intergenic 30.0%
ATTGTAATGAAAAGGCTCAA+AGG - chr7_4:41412322-41412341 None:intergenic 30.0%
ATGGAATTGATAAGTTAAGG+AGG + chr7_4:41412398-41412417 Msa1154060:CDS 30.0%
! CCGAAAATAGGTTGAAAATA+TGG + chr7_4:41412694-41412713 Msa1154060:intron 30.0%
GTGTAGCACTTTAATTGAAA+CGG + chr7_4:41412716-41412735 Msa1154060:intron 30.0%
TTCGAGTCGAGTTATATAAA+GGG - chr7_4:41412791-41412810 None:intergenic 30.0%
ATTCGAGTCGAGTTATATAA+AGG - chr7_4:41412792-41412811 None:intergenic 30.0%
AGGAACAGTGAAAACTATTA+TGG - chr7_4:41412920-41412939 None:intergenic 30.0%
CATCATAACAAACCAATTCA+AGG - chr7_4:41412940-41412959 None:intergenic 30.0%
!! AATTGGTTTGTTATGATGCA+GGG + chr7_4:41412942-41412961 Msa1154060:intron 30.0%
AAAATCCACTGCTAAAAAGA+TGG - chr7_4:41413100-41413119 None:intergenic 30.0%
!! CTTTTTAGCAGTGGATTTTT+TGG + chr7_4:41413101-41413120 Msa1154060:CDS 30.0%
ATGCTGAACTATACTTCAAA+AGG - chr7_4:41413148-41413167 None:intergenic 30.0%
! TTCAGCATCAATTTGTTTGT+TGG + chr7_4:41413160-41413179 Msa1154060:CDS 30.0%
TGCATCAATTAGAAATCCAA+TGG - chr7_4:41413210-41413229 None:intergenic 30.0%
!!! TCTTATGGAGATTTTTTGTC+TGG + chr7_4:41413245-41413264 Msa1154060:CDS 30.0%
ACACAAAGTGTATTGGAAAA+AGG + chr7_4:41413275-41413294 Msa1154060:CDS 30.0%
CACAAAGTGTATTGGAAAAA+GGG + chr7_4:41413276-41413295 Msa1154060:CDS 30.0%
!!! TCTTAGCTTTTGTTGGTAAT+AGG + chr7_4:41413303-41413322 Msa1154060:CDS 30.0%
!!! CTTAGCTTTTGTTGGTAATA+GGG + chr7_4:41413304-41413323 Msa1154060:CDS 30.0%
!!! CTAGGTTGGTTATTTTACAT+TGG - chr7_4:41413465-41413484 None:intergenic 30.0%
TAAAATAACCAACCTAGCTA+TGG + chr7_4:41413468-41413487 Msa1154060:exon 30.0%
!! TTAATTTTCTAGCCATAGCT+AGG - chr7_4:41413483-41413502 None:intergenic 30.0%
ATTGGGATTACACAGTATAT+TGG + chr7_4:41413561-41413580 Msa1154060:three_prime_UTR 30.0%
!!! AAACCTAAATTTTGGCCTTA+GGG - chr7_4:41412234-41412253 None:intergenic 30.0%
!! AAAACCTAAATTTTGGCCTT+AGG - chr7_4:41412235-41412254 None:intergenic 30.0%
! TTTTTCTTGCTTCATCACTA+AGG + chr7_4:41412257-41412276 Msa1154060:five_prime_UTR 30.0%
TTGTAATGAAAAGGCTCAAA+GGG - chr7_4:41412321-41412340 None:intergenic 30.0%
ATTGTAATGAAAAGGCTCAA+AGG - chr7_4:41412322-41412341 None:intergenic 30.0%
ATGGAATTGATAAGTTAAGG+AGG + chr7_4:41412398-41412417 Msa1154060:CDS 30.0%
! CCGAAAATAGGTTGAAAATA+TGG + chr7_4:41412694-41412713 Msa1154060:intron 30.0%
GTGTAGCACTTTAATTGAAA+CGG + chr7_4:41412716-41412735 Msa1154060:intron 30.0%
TTCGAGTCGAGTTATATAAA+GGG - chr7_4:41412791-41412810 None:intergenic 30.0%
ATTCGAGTCGAGTTATATAA+AGG - chr7_4:41412792-41412811 None:intergenic 30.0%
AGGAACAGTGAAAACTATTA+TGG - chr7_4:41412920-41412939 None:intergenic 30.0%
CATCATAACAAACCAATTCA+AGG - chr7_4:41412940-41412959 None:intergenic 30.0%
!! AATTGGTTTGTTATGATGCA+GGG + chr7_4:41412942-41412961 Msa1154060:intron 30.0%
AAAATCCACTGCTAAAAAGA+TGG - chr7_4:41413100-41413119 None:intergenic 30.0%
!! CTTTTTAGCAGTGGATTTTT+TGG + chr7_4:41413101-41413120 Msa1154060:CDS 30.0%
ATGCTGAACTATACTTCAAA+AGG - chr7_4:41413148-41413167 None:intergenic 30.0%
! TTCAGCATCAATTTGTTTGT+TGG + chr7_4:41413160-41413179 Msa1154060:CDS 30.0%
TGCATCAATTAGAAATCCAA+TGG - chr7_4:41413210-41413229 None:intergenic 30.0%
!!! TCTTATGGAGATTTTTTGTC+TGG + chr7_4:41413245-41413264 Msa1154060:CDS 30.0%
ACACAAAGTGTATTGGAAAA+AGG + chr7_4:41413275-41413294 Msa1154060:CDS 30.0%
CACAAAGTGTATTGGAAAAA+GGG + chr7_4:41413276-41413295 Msa1154060:CDS 30.0%
!!! TCTTAGCTTTTGTTGGTAAT+AGG + chr7_4:41413303-41413322 Msa1154060:CDS 30.0%
!!! CTTAGCTTTTGTTGGTAATA+GGG + chr7_4:41413304-41413323 Msa1154060:CDS 30.0%
!!! CTAGGTTGGTTATTTTACAT+TGG - chr7_4:41413465-41413484 None:intergenic 30.0%
TAAAATAACCAACCTAGCTA+TGG + chr7_4:41413468-41413487 Msa1154060:exon 30.0%
!! TTAATTTTCTAGCCATAGCT+AGG - chr7_4:41413483-41413502 None:intergenic 30.0%
ATTGGGATTACACAGTATAT+TGG + chr7_4:41413561-41413580 Msa1154060:three_prime_UTR 30.0%
!!! AACCTAAATTTTGGCCTTAG+GGG - chr7_4:41412233-41412252 None:intergenic 35.0%
!! GATGGGAGAAGGTATTTATT+TGG + chr7_4:41412282-41412301 Msa1154060:exon 35.0%
ATAAGTTAAGGAGGACTACT+TGG + chr7_4:41412407-41412426 Msa1154060:CDS 35.0%
TAAGTTAAGGAGGACTACTT+GGG + chr7_4:41412408-41412427 Msa1154060:CDS 35.0%
CTCCAAGTTAGAATCAACTT+GGG - chr7_4:41412555-41412574 None:intergenic 35.0%
! ATAACTCGACTCGAATTAGT+TGG + chr7_4:41412796-41412815 Msa1154060:intron 35.0%
! TAACTCGACTCGAATTAGTT+GGG + chr7_4:41412797-41412816 Msa1154060:intron 35.0%
!!! TTTCCTCATGATTTGGCTTT+TGG + chr7_4:41412893-41412912 Msa1154060:intron 35.0%
! GTTTTCACTGTTCCTTGAAT+TGG + chr7_4:41412925-41412944 Msa1154060:intron 35.0%
!! GAATTGGTTTGTTATGATGC+AGG + chr7_4:41412941-41412960 Msa1154060:intron 35.0%
! TATAGTTGCTGTGAGTATTG+TGG - chr7_4:41413021-41413040 None:intergenic 35.0%
TAGTTTCTTATGCAGCTCAA+TGG + chr7_4:41413184-41413203 Msa1154060:CDS 35.0%
!!! TATGGAGATTTTTTGTCTGG+TGG + chr7_4:41413248-41413267 Msa1154060:CDS 35.0%
TGGTTACACACAAAGTGTAT+TGG + chr7_4:41413268-41413287 Msa1154060:CDS 35.0%
!! GGGTTTATCTTAGCTTTTGT+TGG + chr7_4:41413296-41413315 Msa1154060:CDS 35.0%
! TTGCTATTCCTTTGATGCTT+TGG + chr7_4:41413336-41413355 Msa1154060:CDS 35.0%
GAGGCTAAAAATACAAGAAC+TGG - chr7_4:41413371-41413390 None:intergenic 35.0%
!!! ATTTTTAGCCTCCATAGCTT+TGG + chr7_4:41413379-41413398 Msa1154060:CDS 35.0%
CAACAAACAAACCAAAGCTA+TGG - chr7_4:41413393-41413412 None:intergenic 35.0%
AAGTGTTCCATGTGTGAATT+GGG + chr7_4:41413544-41413563 Msa1154060:three_prime_UTR 35.0%
! AGTATATTGGTGGTTGAAAG+TGG + chr7_4:41413574-41413593 Msa1154060:three_prime_UTR 35.0%
!!! AACCTAAATTTTGGCCTTAG+GGG - chr7_4:41412233-41412252 None:intergenic 35.0%
!! GATGGGAGAAGGTATTTATT+TGG + chr7_4:41412282-41412301 Msa1154060:exon 35.0%
ATAAGTTAAGGAGGACTACT+TGG + chr7_4:41412407-41412426 Msa1154060:CDS 35.0%
TAAGTTAAGGAGGACTACTT+GGG + chr7_4:41412408-41412427 Msa1154060:CDS 35.0%
CTCCAAGTTAGAATCAACTT+GGG - chr7_4:41412555-41412574 None:intergenic 35.0%
! ATAACTCGACTCGAATTAGT+TGG + chr7_4:41412796-41412815 Msa1154060:intron 35.0%
! TAACTCGACTCGAATTAGTT+GGG + chr7_4:41412797-41412816 Msa1154060:intron 35.0%
!!! TTTCCTCATGATTTGGCTTT+TGG + chr7_4:41412893-41412912 Msa1154060:intron 35.0%
! GTTTTCACTGTTCCTTGAAT+TGG + chr7_4:41412925-41412944 Msa1154060:intron 35.0%
!! GAATTGGTTTGTTATGATGC+AGG + chr7_4:41412941-41412960 Msa1154060:intron 35.0%
! TATAGTTGCTGTGAGTATTG+TGG - chr7_4:41413021-41413040 None:intergenic 35.0%
TAGTTTCTTATGCAGCTCAA+TGG + chr7_4:41413184-41413203 Msa1154060:CDS 35.0%
!!! TATGGAGATTTTTTGTCTGG+TGG + chr7_4:41413248-41413267 Msa1154060:CDS 35.0%
TGGTTACACACAAAGTGTAT+TGG + chr7_4:41413268-41413287 Msa1154060:CDS 35.0%
!! GGGTTTATCTTAGCTTTTGT+TGG + chr7_4:41413296-41413315 Msa1154060:CDS 35.0%
! TTGCTATTCCTTTGATGCTT+TGG + chr7_4:41413336-41413355 Msa1154060:CDS 35.0%
GAGGCTAAAAATACAAGAAC+TGG - chr7_4:41413371-41413390 None:intergenic 35.0%
!!! ATTTTTAGCCTCCATAGCTT+TGG + chr7_4:41413379-41413398 Msa1154060:CDS 35.0%
CAACAAACAAACCAAAGCTA+TGG - chr7_4:41413393-41413412 None:intergenic 35.0%
AAGTGTTCCATGTGTGAATT+GGG + chr7_4:41413544-41413563 Msa1154060:three_prime_UTR 35.0%
! AGTATATTGGTGGTTGAAAG+TGG + chr7_4:41413574-41413593 Msa1154060:three_prime_UTR 35.0%
!!! TAAATTTTGGCCTTAGGGGT+TGG - chr7_4:41412229-41412248 None:intergenic 40.0%
AACCCCTAAGGCCAAAATTT+AGG + chr7_4:41412228-41412247 Msa1154060:five_prime_UTR 40.0%
TGCTTCATCACTAAGGAAGA+TGG + chr7_4:41412264-41412283 Msa1154060:exon 40.0%
GCTTCATCACTAAGGAAGAT+GGG + chr7_4:41412265-41412284 Msa1154060:exon 40.0%
AAGGCTCAAAGGGACTAATA+TGG - chr7_4:41412311-41412330 None:intergenic 40.0%
AAACCTTCACGCACAACTTA+TGG + chr7_4:41412379-41412398 Msa1154060:CDS 40.0%
ATTCCATAAGTTGTGCGTGA+AGG - chr7_4:41412385-41412404 None:intergenic 40.0%
AAGTTAAGGAGGACTACTTG+GGG + chr7_4:41412409-41412428 Msa1154060:CDS 40.0%
TTGGGGTCTTAACGTAAATC+AGG + chr7_4:41412426-41412445 Msa1154060:CDS 40.0%
!! CTCCCAAGTTGATTCTAACT+TGG + chr7_4:41412550-41412569 Msa1154060:intron 40.0%
GCTCCAAGTTAGAATCAACT+TGG - chr7_4:41412556-41412575 None:intergenic 40.0%
AAAGGGAAAATCCACGTCAT+GGG - chr7_4:41412774-41412793 None:intergenic 40.0%
TAAAGGGAAAATCCACGTCA+TGG - chr7_4:41412775-41412794 None:intergenic 40.0%
GTGTTATCTCGAAGTCACAT+CGG - chr7_4:41412824-41412843 None:intergenic 40.0%
GATGCAGGGTGATGATAAAA+AGG + chr7_4:41412956-41412975 Msa1154060:intron 40.0%
TGCTATGTGTACAAACCATG+AGG + chr7_4:41412982-41413001 Msa1154060:CDS 40.0%
! TCCTTTGATGCTTTGGATGT+TGG + chr7_4:41413343-41413362 Msa1154060:CDS 40.0%
! CCTTTGATGCTTTGGATGTT+GGG + chr7_4:41413344-41413363 Msa1154060:CDS 40.0%
CAAACAAACCAAAGCTATGG+AGG - chr7_4:41413390-41413409 None:intergenic 40.0%
TTATGTCCCCAAATTACCAC+AGG + chr7_4:41413424-41413443 Msa1154060:CDS 40.0%
TATGTCCCCAAATTACCACA+GGG + chr7_4:41413425-41413444 Msa1154060:CDS 40.0%
TTGTGACCCTGTGGTAATTT+GGG - chr7_4:41413434-41413453 None:intergenic 40.0%
TTTGTGACCCTGTGGTAATT+TGG - chr7_4:41413435-41413454 None:intergenic 40.0%
!! TTTTCTAGCCATAGCTAGGT+TGG - chr7_4:41413479-41413498 None:intergenic 40.0%
! GAAGTGTTCCATGTGTGAAT+TGG + chr7_4:41413543-41413562 Msa1154060:three_prime_UTR 40.0%
GTGTAATCCCAATTCACACA+TGG - chr7_4:41413554-41413573 None:intergenic 40.0%
GGGATTACACAGTATATTGG+TGG + chr7_4:41413564-41413583 Msa1154060:three_prime_UTR 40.0%
!!! TAAATTTTGGCCTTAGGGGT+TGG - chr7_4:41412229-41412248 None:intergenic 40.0%
AACCCCTAAGGCCAAAATTT+AGG + chr7_4:41412228-41412247 Msa1154060:five_prime_UTR 40.0%
TGCTTCATCACTAAGGAAGA+TGG + chr7_4:41412264-41412283 Msa1154060:exon 40.0%
GCTTCATCACTAAGGAAGAT+GGG + chr7_4:41412265-41412284 Msa1154060:exon 40.0%
AAGGCTCAAAGGGACTAATA+TGG - chr7_4:41412311-41412330 None:intergenic 40.0%
AAACCTTCACGCACAACTTA+TGG + chr7_4:41412379-41412398 Msa1154060:CDS 40.0%
ATTCCATAAGTTGTGCGTGA+AGG - chr7_4:41412385-41412404 None:intergenic 40.0%
AAGTTAAGGAGGACTACTTG+GGG + chr7_4:41412409-41412428 Msa1154060:CDS 40.0%
TTGGGGTCTTAACGTAAATC+AGG + chr7_4:41412426-41412445 Msa1154060:CDS 40.0%
!! CTCCCAAGTTGATTCTAACT+TGG + chr7_4:41412550-41412569 Msa1154060:intron 40.0%
GCTCCAAGTTAGAATCAACT+TGG - chr7_4:41412556-41412575 None:intergenic 40.0%
AAAGGGAAAATCCACGTCAT+GGG - chr7_4:41412774-41412793 None:intergenic 40.0%
TAAAGGGAAAATCCACGTCA+TGG - chr7_4:41412775-41412794 None:intergenic 40.0%
GTGTTATCTCGAAGTCACAT+CGG - chr7_4:41412824-41412843 None:intergenic 40.0%
GATGCAGGGTGATGATAAAA+AGG + chr7_4:41412956-41412975 Msa1154060:intron 40.0%
TGCTATGTGTACAAACCATG+AGG + chr7_4:41412982-41413001 Msa1154060:CDS 40.0%
! TCCTTTGATGCTTTGGATGT+TGG + chr7_4:41413343-41413362 Msa1154060:CDS 40.0%
! CCTTTGATGCTTTGGATGTT+GGG + chr7_4:41413344-41413363 Msa1154060:CDS 40.0%
CAAACAAACCAAAGCTATGG+AGG - chr7_4:41413390-41413409 None:intergenic 40.0%
TTATGTCCCCAAATTACCAC+AGG + chr7_4:41413424-41413443 Msa1154060:CDS 40.0%
TATGTCCCCAAATTACCACA+GGG + chr7_4:41413425-41413444 Msa1154060:CDS 40.0%
TTGTGACCCTGTGGTAATTT+GGG - chr7_4:41413434-41413453 None:intergenic 40.0%
TTTGTGACCCTGTGGTAATT+TGG - chr7_4:41413435-41413454 None:intergenic 40.0%
!! TTTTCTAGCCATAGCTAGGT+TGG - chr7_4:41413479-41413498 None:intergenic 40.0%
! GAAGTGTTCCATGTGTGAAT+TGG + chr7_4:41413543-41413562 Msa1154060:three_prime_UTR 40.0%
GTGTAATCCCAATTCACACA+TGG - chr7_4:41413554-41413573 None:intergenic 40.0%
GGGATTACACAGTATATTGG+TGG + chr7_4:41413564-41413583 Msa1154060:three_prime_UTR 40.0%
TCACTAAGGAAGATGGGAGA+AGG + chr7_4:41412271-41412290 Msa1154060:exon 45.0%
TGGTGTAGCAGAGAAAAGCA+TGG - chr7_4:41412351-41412370 None:intergenic 45.0%
! GCGTGAAGGTTTGTTCTTGA+TGG - chr7_4:41412371-41412390 None:intergenic 45.0%
GGTCCAAAAGCCAAATCATG+AGG - chr7_4:41412899-41412918 None:intergenic 45.0%
!! GGTCATAAGAGTGTTCCTCA+TGG - chr7_4:41413000-41413019 None:intergenic 45.0%
!! GCAAGCCATCTTTTTAGCAG+TGG + chr7_4:41413092-41413111 Msa1154060:CDS 45.0%
TTATGCAGCTCAATGGCCAT+TGG + chr7_4:41413191-41413210 Msa1154060:CDS 45.0%
! CCCAACATCCAAAGCATCAA+AGG - chr7_4:41413347-41413366 None:intergenic 45.0%
TGTGACCCTGTGGTAATTTG+GGG - chr7_4:41413433-41413452 None:intergenic 45.0%
TCACTAAGGAAGATGGGAGA+AGG + chr7_4:41412271-41412290 Msa1154060:exon 45.0%
TGGTGTAGCAGAGAAAAGCA+TGG - chr7_4:41412351-41412370 None:intergenic 45.0%
! GCGTGAAGGTTTGTTCTTGA+TGG - chr7_4:41412371-41412390 None:intergenic 45.0%
GGTCCAAAAGCCAAATCATG+AGG - chr7_4:41412899-41412918 None:intergenic 45.0%
!! GGTCATAAGAGTGTTCCTCA+TGG - chr7_4:41413000-41413019 None:intergenic 45.0%
!! GCAAGCCATCTTTTTAGCAG+TGG + chr7_4:41413092-41413111 Msa1154060:CDS 45.0%
TTATGCAGCTCAATGGCCAT+TGG + chr7_4:41413191-41413210 Msa1154060:CDS 45.0%
! CCCAACATCCAAAGCATCAA+AGG - chr7_4:41413347-41413366 None:intergenic 45.0%
TGTGACCCTGTGGTAATTTG+GGG - chr7_4:41413433-41413452 None:intergenic 45.0%
ACCAACCAAACCAACCCCTA+AGG + chr7_4:41412216-41412235 Msa1154060:five_prime_UTR 50.0%
!! TTTGGCCTTAGGGGTTGGTT+TGG - chr7_4:41412224-41412243 None:intergenic 50.0%
GTACATCGTTTGTGACCCTG+TGG - chr7_4:41413443-41413462 None:intergenic 50.0%
!! GGGGTTGGTTTGGTTGGTAA+TGG - chr7_4:41412214-41412233 None:intergenic 50.0%
ACCAACCAAACCAACCCCTA+AGG + chr7_4:41412216-41412235 Msa1154060:five_prime_UTR 50.0%
!! TTTGGCCTTAGGGGTTGGTT+TGG - chr7_4:41412224-41412243 None:intergenic 50.0%
GTACATCGTTTGTGACCCTG+TGG - chr7_4:41413443-41413462 None:intergenic 50.0%
!! GCCTTAGGGGTTGGTTTGGT+TGG - chr7_4:41412220-41412239 None:intergenic 55.0%
GAAATCAGAGGCCCATGACG+TGG + chr7_4:41412760-41412779 Msa1154060:intron 55.0%
!! GCCTTAGGGGTTGGTTTGGT+TGG - chr7_4:41412220-41412239 None:intergenic 55.0%
GAAATCAGAGGCCCATGACG+TGG + chr7_4:41412760-41412779 Msa1154060:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 41412214 41413605 41412214 ID=Msa1154060;Name=Msa1154060
chr7_4 mRNA 41412214 41413605 41412214 ID=Msa1154060-mRNA-1;Parent=Msa1154060;Name=Msa1154060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|2|130|225
chr7_4 exon 41412214 41412447 41412214 ID=Msa1154060-mRNA-1:exon:10001;Parent=Msa1154060-mRNA-1
chr7_4 exon 41412963 41413605 41412963 ID=Msa1154060-mRNA-1:exon:10002;Parent=Msa1154060-mRNA-1
chr7_4 five_prime_UTR 41412214 41412282 41412214 ID=Msa1154060-mRNA-1:five_prime_utr;Parent=Msa1154060-mRNA-1
chr7_4 CDS 41412283 41412447 41412283 ID=Msa1154060-mRNA-1:cds;Parent=Msa1154060-mRNA-1
chr7_4 CDS 41412963 41413475 41412963 ID=Msa1154060-mRNA-1:cds;Parent=Msa1154060-mRNA-1
chr7_4 three_prime_UTR 41413476 41413605 41413476 ID=Msa1154060-mRNA-1:three_prime_utr;Parent=Msa1154060-mRNA-1
Gene Sequence

>Msa1154060

ATGGGAGAAGGTATTTATTTGGATACCATATTAGTCCCTTTGAGCCTTTTCATTACAATAATTTACCATGCTTTTCTCTGCTACACCATCAAGAACAAACCTTCACGCACAACTTATGGAATTGATAAGTTAAGGAGGACTACTTGGGGTCTTAACGTAAATCAGGGTGATGATAAAAAGGCTATGCTATGTGTACAAACCATGAGGAACACTCTTATGACCACAATACTCACAGCAACTATAACAATTCTTGTAAACATGGCTTTAGCAGCTCTAAACAACAATGCATTCAATGCAAGCCATCTTTTTAGCAGTGGATTTTTTGGTTCAAAATCAGATACAATCTTCCTTTTGAAGTATAGTTCAGCATCAATTTGTTTGTTGGTTAGTTTCTTATGCAGCTCAATGGCCATTGGATTTCTAATTGATGCAAATTTTTTGATGAATTCTTATGGAGATTTTTTGTCTGGTGGTTACACACAAAGTGTATTGGAAAAAGGGTTTATCTTAGCTTTTGTTGGTAATAGGGTGTTTTGTGTTGCTATTCCTTTGATGCTTTGGATGTTGGGTCCAGTTCTTGTATTTTTAGCCTCCATAGCTTTGGTTTGTTTGTTGCATGAGTTTGATTATGTCCCCAAATTACCACAGGGTCACAAACGATGTACCAATGTAAAATAA

Protein sequence

>Msa1154060

MGEGIYLDTILVPLSLFITIIYHAFLCYTIKNKPSRTTYGIDKLRRTTWGLNVNQGDDKKAMLCVQTMRNTLMTTILTATITILVNMALAALNNNAFNASHLFSSGFFGSKSDTIFLLKYSSASICLLVSFLCSSMAIGFLIDANFLMNSYGDFLSGGYTQSVLEKGFILAFVGNRVFCVAIPLMLWMLGPVLVFLASIALVCLLHEFDYVPKLPQGHKRCTNVK*