AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0241750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241750 MtrunA17_Chr2g0293481 96.701 485 6 4 1 477 1 483 0.0 949
Msa0241750 MtrunA17_Chr7g0248691 49.479 192 70 5 232 423 135 299 4.98e-48 168
Msa0241750 MtrunA17_Chr8g0348311 41.892 222 98 4 232 453 136 326 2.78e-44 158
Msa0241750 MtrunA17_Chr7g0270051 42.449 245 103 11 210 423 4 241 1.00e-39 144
Msa0241750 MtrunA17_Chr8g0379461 65.625 96 31 1 232 325 45 140 1.15e-37 138
Msa0241750 MtrunA17_Chr1g0202461 61.165 103 31 1 232 334 241 334 7.55e-37 139
Msa0241750 MtrunA17_Chr2g0319961 55.556 117 46 2 215 325 28 144 2.73e-35 132
Msa0241750 MtrunA17_Chr8g0387501 68.235 85 23 1 261 345 129 209 1.45e-34 130
Msa0241750 MtrunA17_Chr2g0284321 53.279 122 47 2 233 354 11 122 8.87e-33 124
Msa0241750 MtrunA17_Chr4g0071521 59.770 87 30 1 232 318 221 302 2.56e-29 117
Msa0241750 MtrunA17_Chr1g0147881 57.955 88 32 2 231 318 237 319 3.48e-29 117
Msa0241750 MtrunA17_Chr5g0401821 56.842 95 36 2 224 318 167 256 1.12e-27 111
Msa0241750 MtrunA17_Chr4g0053281 57.471 87 32 2 232 318 242 323 4.74e-26 108
Msa0241750 MtrunA17_Chr1g0184691 53.846 91 36 3 234 323 271 356 7.09e-25 105
Msa0241750 MtrunA17_Chr7g0228941 63.333 60 22 0 259 318 50 109 1.09e-24 99.0
Msa0241750 MtrunA17_Chr3g0139021 48.454 97 45 2 222 318 280 371 1.83e-24 105
Msa0241750 MtrunA17_Chr2g0289181 51.948 77 36 1 259 334 12 88 2.17e-23 98.6
Msa0241750 MtrunA17_Chr1g0194481 52.632 76 34 2 262 336 159 233 2.83e-20 91.7
Msa0241750 MtrunA17_Chr7g0270831 52.113 71 34 0 261 331 216 286 6.84e-19 89.0
Msa0241750 MtrunA17_Chr3g0099641 41.584 101 58 1 236 336 227 326 8.44e-19 89.0
Msa0241750 MtrunA17_Chr4g0051881 57.377 61 25 1 262 322 179 238 9.39e-19 87.4
Msa0241750 MtrunA17_Chr7g0218081 51.316 76 36 1 262 337 411 485 1.21e-18 88.6
Msa0241750 MtrunA17_Chr4g0042831 41.584 101 52 2 230 324 241 340 5.69e-18 85.5
Msa0241750 MtrunA17_Chr4g0001361 49.367 79 39 1 255 333 157 234 6.23e-18 84.7
Msa0241750 MtrunA17_Chr2g0288871 57.377 61 26 0 261 321 305 365 9.66e-18 85.9
Msa0241750 MtrunA17_Chr4g0025061 30.058 173 96 4 160 331 282 430 3.48e-17 84.3
Msa0241750 MtrunA17_Chr5g0418191 47.561 82 39 2 262 340 321 401 4.14e-17 83.6
Msa0241750 MtrunA17_Chr5g0418191 48.333 60 29 2 262 321 152 209 7.96e-11 63.9
Msa0241750 MtrunA17_Chr5g0443131 55.738 61 26 1 262 322 158 217 4.60e-17 82.0
Msa0241750 MtrunA17_Chr7g0270191 39.259 135 70 5 222 349 109 238 8.51e-17 80.9
Msa0241750 MtrunA17_Chr4g0051181 54.098 61 28 0 262 322 244 304 1.19e-16 82.4
Msa0241750 MtrunA17_Chr2g0333851 43.038 79 45 0 258 336 166 244 1.27e-16 80.9
Msa0241750 MtrunA17_Chr7g0216891 48.571 70 36 0 262 331 220 289 1.49e-16 82.4
Msa0241750 MtrunA17_Chr7g0238921 43.299 97 48 2 222 318 91 180 1.78e-16 80.1
Msa0241750 MtrunA17_Chr4g0025051 45.333 75 41 0 257 331 331 405 1.84e-16 82.0
Msa0241750 MtrunA17_Chr4g0075201 53.333 60 28 0 262 321 268 327 2.08e-16 81.6
Msa0241750 MtrunA17_Chr7g0263531 55.385 65 28 1 259 323 359 422 4.56e-16 80.1
Msa0241750 MtrunA17_Chr7g0263531 39.796 98 46 4 243 331 164 257 2.70e-12 68.6
Msa0241750 MtrunA17_Chr7g0249311 40.000 100 53 2 232 325 357 455 4.74e-16 80.9
Msa0241750 MtrunA17_Chr7g0249311 47.143 70 35 2 252 321 170 237 1.48e-11 66.6
Msa0241750 MtrunA17_Chr2g0302391 39.394 99 59 1 235 333 186 283 1.23e-15 79.0
Msa0241750 MtrunA17_Chr5g0418781 54.386 57 25 1 262 318 125 180 1.47e-15 77.0
Msa0241750 MtrunA17_Chr3g0101131 45.000 80 34 2 262 332 416 494 2.19e-15 78.6
Msa0241750 MtrunA17_Chr2g0322391 45.833 72 39 0 262 333 350 421 2.47e-15 78.6
Msa0241750 MtrunA17_Chr2g0294231 51.667 60 28 1 262 321 204 262 2.81e-15 77.4
Msa0241750 MtrunA17_Chr8g0383251 40.217 92 47 3 230 321 84 167 3.16e-15 73.9
Msa0241750 MtrunA17_Chr3g0136961 42.529 87 38 1 262 348 139 213 3.80e-15 75.9
Msa0241750 MtrunA17_Chr3g0129321 35.537 121 74 3 204 322 60 178 3.90e-15 74.3
Msa0241750 MtrunA17_Chr5g0445311 47.692 65 33 1 262 326 365 428 4.15e-15 77.8
Msa0241750 MtrunA17_Chr8g0347251 31.250 224 111 10 173 386 54 244 7.58e-15 75.9
Msa0241750 MtrunA17_Chr3g0126391 42.342 111 56 4 262 369 134 239 1.11e-14 75.1
Msa0241750 MtrunA17_Chr4g0060271 51.667 60 29 0 262 321 256 315 1.25e-14 76.3
Msa0241750 MtrunA17_Chr1g0150281 42.857 77 39 1 242 318 126 197 1.79e-14 73.9
Msa0241750 MtrunA17_Chr4g0068541 42.667 75 42 1 262 336 209 282 2.77e-14 74.7
Msa0241750 MtrunA17_Chr7g0249301 41.975 81 46 1 244 324 275 354 3.72e-14 73.9
Msa0241750 MtrunA17_Chr7g0249301 50.000 70 33 2 252 321 53 120 7.45e-13 70.1
Msa0241750 MtrunA17_Chr4g0024391 41.333 75 44 0 257 331 225 299 4.51e-14 74.3
Msa0241750 MtrunA17_Chr3g0079691 46.575 73 37 2 255 326 488 559 4.81e-14 74.7
Msa0241750 MtrunA17_Chr3g0079691 49.296 71 33 3 262 331 281 349 5.19e-12 68.2
Msa0241750 MtrunA17_Chr7g0275531 39.796 98 45 3 262 353 119 208 5.61e-14 72.8
Msa0241750 MtrunA17_Chr4g0004911 46.479 71 36 2 255 324 329 398 6.70e-14 73.9
Msa0241750 MtrunA17_Chr4g0004911 49.254 67 31 2 262 326 185 250 1.67e-12 69.3
Msa0241750 MtrunA17_Chr8g0335811 33.065 124 73 3 195 318 97 210 7.25e-14 70.9
Msa0241750 MtrunA17_Chr7g0224801 45.902 61 32 1 259 319 91 150 8.32e-14 69.3
Msa0241750 MtrunA17_Chr6g0485431 44.156 77 41 2 246 321 139 214 9.52e-14 72.4
Msa0241750 MtrunA17_Chr4g0074001 47.761 67 32 2 262 326 360 425 2.32e-13 72.0
Msa0241750 MtrunA17_Chr5g0432161 37.864 103 55 2 232 326 384 485 2.49e-13 72.4
Msa0241750 MtrunA17_Chr1g0150801 34.862 109 66 3 211 319 56 159 2.64e-13 67.8
Msa0241750 MtrunA17_Chr5g0447701 48.485 66 33 1 262 327 253 317 4.20e-13 70.9
Msa0241750 MtrunA17_Chr1g0188941 45.312 64 34 1 259 322 49 111 4.75e-13 65.5
Msa0241750 MtrunA17_Chr3g0106491 46.154 65 34 1 262 326 366 429 8.35e-13 70.5
Msa0241750 MtrunA17_Chr8g0383351 46.667 60 31 1 259 318 158 216 9.23e-13 67.8
Msa0241750 MtrunA17_Chr7g0243891 42.667 75 41 2 255 328 367 440 9.28e-13 70.5
Msa0241750 MtrunA17_Chr7g0243891 38.281 128 63 6 262 379 217 338 8.01e-11 64.3
Msa0241750 MtrunA17_Chr1g0150271 42.424 66 38 0 258 323 98 163 9.54e-13 68.2
Msa0241750 MtrunA17_Chr3g0129361 46.667 60 31 1 259 318 142 200 1.79e-12 66.6
Msa0241750 MtrunA17_Chr1g0189391 37.234 94 51 3 232 318 62 154 4.87e-12 67.0
Msa0241750 MtrunA17_Chr7g0248721 41.573 89 47 5 232 319 113 197 6.62e-12 65.1
Msa0241750 MtrunA17_Chr8g0387981 50.877 57 26 1 262 316 133 189 2.70e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241750 AT1G30650.1 41.176 493 211 15 1 477 1 430 1.14e-86 273
Msa0241750 AT2G34830.2 40.977 471 184 18 1 438 1 410 7.26e-82 260
Msa0241750 AT2G34830.1 40.998 461 179 17 11 438 1 401 7.30e-80 255
Msa0241750 AT4G01250.1 48.603 179 61 4 232 402 109 264 1.07e-44 159
Msa0241750 AT5G52830.1 52.667 150 37 3 232 381 145 260 2.00e-40 149
Msa0241750 AT5G45050.1 40.927 259 108 9 210 451 1141 1371 7.01e-40 154
Msa0241750 AT5G45050.2 40.927 259 108 9 210 451 1113 1343 8.30e-40 154
Msa0241750 AT1G29280.1 60.526 114 39 2 220 332 32 140 8.93e-40 144
Msa0241750 AT5G45050.4 40.927 259 108 9 210 451 1002 1232 9.12e-40 154
Msa0241750 AT3G58710.2 68.478 92 28 1 232 322 40 131 4.96e-38 140
Msa0241750 AT3G58710.1 66.327 98 32 1 226 322 35 132 5.82e-38 140
Msa0241750 AT4G23550.1 56.911 123 43 2 236 357 124 237 1.24e-34 132
Msa0241750 AT2G30590.1 54.455 101 40 3 224 323 281 376 9.30e-29 117
Msa0241750 AT5G45260.1 57.009 107 33 2 232 336 1190 1285 2.08e-28 120
Msa0241750 AT2G23320.1 46.957 115 56 1 204 318 188 297 2.40e-27 112
Msa0241750 AT4G31550.2 55.172 87 34 1 232 318 221 302 4.76e-27 111
Msa0241750 AT4G24240.1 53.191 94 39 1 225 318 250 338 1.27e-26 110
Msa0241750 AT4G31550.1 55.172 87 34 1 232 318 222 303 1.58e-26 110
Msa0241750 AT2G24570.1 54.023 87 35 1 232 318 219 300 2.90e-25 106
Msa0241750 AT5G28650.1 52.874 87 36 2 232 318 238 319 1.07e-23 102
Msa0241750 AT3G04670.1 52.874 87 36 2 232 318 238 319 1.24e-23 102
Msa0241750 AT5G46350.1 54.054 74 31 2 262 333 184 256 4.65e-20 91.3
Msa0241750 AT1G29860.1 53.623 69 30 2 262 329 137 204 1.23e-18 86.7
Msa0241750 AT4G18170.1 57.377 61 25 1 262 322 173 232 2.28e-18 86.3
Msa0241750 AT1G68150.1 48.649 74 38 0 262 335 236 309 3.24e-18 86.7
Msa0241750 AT1G13960.2 45.000 100 42 4 232 321 219 315 5.44e-18 85.9
Msa0241750 AT1G13960.2 50.000 60 28 2 262 321 77 134 2.72e-11 65.5
Msa0241750 AT1G13960.1 45.000 100 42 4 232 321 372 468 8.09e-18 86.7
Msa0241750 AT1G13960.1 50.000 60 28 2 262 321 230 287 3.67e-11 65.9
Msa0241750 AT4G04450.2 50.704 71 35 0 261 331 198 268 1.38e-17 85.5
Msa0241750 AT5G49520.1 55.000 60 26 1 262 321 222 280 1.55e-17 84.7
Msa0241750 AT4G04450.1 48.684 76 39 0 261 336 292 367 1.59e-17 85.5
Msa0241750 AT1G62300.1 55.738 61 27 0 261 321 312 372 1.76e-17 85.5
Msa0241750 AT4G22070.4 55.738 61 27 0 261 321 297 357 3.09e-17 84.7
Msa0241750 AT4G22070.3 55.738 61 27 0 261 321 297 357 3.09e-17 84.7
Msa0241750 AT4G22070.2 55.738 61 27 0 261 321 297 357 3.09e-17 84.7
Msa0241750 AT4G22070.1 55.738 61 27 0 261 321 297 357 3.09e-17 84.7
Msa0241750 AT2G04880.2 54.545 66 29 1 259 324 281 345 3.90e-17 84.0
Msa0241750 AT2G04880.1 54.545 66 29 1 259 324 305 369 3.99e-17 84.3
Msa0241750 AT2G03340.1 47.778 90 42 3 262 350 416 501 6.00e-17 84.0
Msa0241750 AT2G03340.1 41.304 92 52 2 262 353 251 340 7.29e-13 71.2
Msa0241750 AT1G80840.1 48.485 66 34 0 258 323 143 208 7.97e-17 81.6
Msa0241750 AT3G62340.1 53.333 60 27 1 262 321 119 177 2.65e-16 79.7
Msa0241750 AT4G01720.1 39.000 100 60 1 222 321 201 299 3.22e-16 81.3
Msa0241750 AT5G26170.1 47.887 71 35 2 248 318 101 169 1.00e-15 75.5
Msa0241750 AT5G15130.1 47.143 70 37 0 262 331 228 297 1.30e-15 79.7
Msa0241750 AT5G15130.2 47.143 70 37 0 262 331 186 255 1.46e-15 79.3
Msa0241750 AT1G18860.1 53.333 60 28 0 262 321 240 299 1.88e-15 79.3
Msa0241750 AT2G21900.1 37.363 91 53 2 232 322 83 169 2.07e-15 75.5
Msa0241750 AT4G31800.2 47.945 73 35 1 262 334 112 181 3.31e-15 75.9
Msa0241750 AT1G69310.4 52.632 57 26 1 262 318 148 203 3.64e-15 76.3
Msa0241750 AT1G69310.2 52.632 57 26 1 262 318 148 203 3.64e-15 76.3
Msa0241750 AT1G69310.1 52.632 57 26 1 262 318 148 203 3.64e-15 76.3
Msa0241750 AT2G25000.2 51.667 60 29 0 262 321 104 163 6.03e-15 74.7
Msa0241750 AT2G25000.4 51.667 60 29 0 262 321 104 163 6.03e-15 74.7
Msa0241750 AT4G31800.1 47.945 73 35 1 262 334 177 246 6.18e-15 75.9
Msa0241750 AT2G25000.3 51.667 60 29 0 262 321 126 185 8.96e-15 74.7
Msa0241750 AT5G07100.2 46.053 76 36 2 262 333 142 216 1.06e-14 73.6
Msa0241750 AT5G07100.4 46.053 76 36 2 262 333 142 216 1.06e-14 73.6
Msa0241750 AT5G07100.5 46.053 76 36 2 262 333 142 216 1.06e-14 73.6
Msa0241750 AT5G07100.3 46.053 76 36 2 262 333 142 216 1.06e-14 73.6
Msa0241750 AT2G47260.1 51.667 60 28 1 262 321 175 233 1.43e-14 75.1
Msa0241750 AT2G25000.1 51.667 60 29 0 262 321 147 206 1.63e-14 74.3
Msa0241750 AT5G41570.1 40.000 90 48 2 230 319 72 155 2.07e-14 72.0
Msa0241750 AT5G07100.1 46.053 76 36 2 262 333 235 309 2.08e-14 74.3
Msa0241750 AT1G64000.1 50.820 61 29 1 259 319 112 171 2.55e-14 72.0
Msa0241750 AT1G69810.1 38.462 104 50 3 229 331 184 274 3.00e-14 74.7
Msa0241750 AT4G26640.5 46.154 65 34 1 262 326 206 269 4.09e-14 74.3
Msa0241750 AT4G26640.6 46.154 65 34 1 262 326 206 269 4.09e-14 74.3
Msa0241750 AT4G26640.4 46.154 65 34 1 262 326 206 269 4.09e-14 74.3
Msa0241750 AT4G26640.3 46.154 65 34 1 262 326 206 269 4.09e-14 74.3
Msa0241750 AT4G26640.7 46.154 65 34 1 262 326 342 405 5.65e-14 74.7
Msa0241750 AT1G69810.2 38.462 104 50 3 229 331 126 216 5.72e-14 73.2
Msa0241750 AT4G26640.2 46.154 65 34 1 262 326 382 445 6.12e-14 74.7
Msa0241750 AT4G26640.1 46.154 65 34 1 262 326 310 373 6.18e-14 74.3
Msa0241750 AT4G30935.1 47.761 67 32 2 262 326 332 397 7.50e-14 73.9
Msa0241750 AT3G01080.2 50.000 60 29 1 262 321 345 403 8.98e-14 73.6
Msa0241750 AT3G01080.2 47.059 68 34 2 262 329 206 271 3.25e-12 68.9
Msa0241750 AT3G01080.1 50.000 60 29 1 262 321 307 365 9.17e-14 73.6
Msa0241750 AT3G01080.1 47.059 68 34 2 262 329 168 233 3.30e-12 68.6
Msa0241750 AT2G37260.3 54.386 57 25 1 262 318 270 325 9.97e-14 72.8
Msa0241750 AT2G37260.3 28.426 197 119 5 255 432 79 272 5.32e-11 64.3
Msa0241750 AT2G37260.2 54.386 57 25 1 262 318 268 323 1.01e-13 72.8
Msa0241750 AT2G37260.2 28.426 197 119 5 255 432 77 270 4.98e-11 64.7
Msa0241750 AT2G37260.1 54.386 57 25 1 262 318 350 405 1.04e-13 73.6
Msa0241750 AT2G37260.1 28.426 197 119 5 255 432 159 352 5.44e-11 65.1
Msa0241750 AT5G56270.1 49.206 63 31 1 262 324 488 549 1.05e-13 73.9
Msa0241750 AT5G56270.1 47.059 68 32 3 262 327 274 339 1.51e-11 67.4
Msa0241750 AT5G13080.1 45.902 61 32 1 259 319 65 124 1.12e-13 68.9
Msa0241750 AT2G38470.1 44.444 72 39 1 262 333 363 433 1.25e-13 73.6
Msa0241750 AT4G39410.1 36.458 96 53 2 223 318 192 279 1.32e-13 72.0
Msa0241750 AT2G40750.1 33.099 142 84 4 232 367 122 258 4.42e-13 70.9
Msa0241750 AT2G44745.1 38.462 91 55 1 228 318 112 201 5.01e-13 68.9
Msa0241750 AT2G30250.1 50.820 61 29 1 262 322 329 388 6.07e-13 70.9
Msa0241750 AT4G26440.1 44.118 68 37 1 259 326 370 436 9.43e-13 70.9
Msa0241750 AT4G26440.1 46.667 75 36 3 262 334 179 251 1.43e-12 70.1
Msa0241750 AT3G01970.1 45.000 60 32 1 259 318 63 121 1.03e-12 66.2
Msa0241750 AT2G40740.1 40.909 88 45 3 232 316 147 230 1.19e-12 68.9
Msa0241750 AT2G46130.1 45.902 61 32 1 259 319 28 87 1.37e-12 64.7
Msa0241750 AT1G55600.1 46.774 62 32 1 260 321 306 366 1.41e-12 70.1
Msa0241750 AT5G43290.1 35.811 148 88 5 262 407 115 257 1.44e-12 68.6
Msa0241750 AT2G40740.3 40.909 88 45 3 232 316 156 239 1.54e-12 68.6
Msa0241750 AT5G24110.1 46.575 73 32 2 246 316 103 170 2.02e-12 68.6
Msa0241750 AT3G01080.3 47.059 68 34 2 262 329 206 271 2.21e-12 68.6
Msa0241750 AT3G56400.1 30.159 126 78 2 201 316 52 177 4.52e-12 67.0
Msa0241750 AT4G11070.2 49.123 57 27 1 262 316 110 166 6.00e-12 66.6
Msa0241750 AT4G11070.1 44.928 69 32 2 262 324 142 210 6.04e-12 67.0
Msa0241750 AT1G66550.2 33.684 95 61 1 224 316 66 160 7.67e-12 65.9
Msa0241750 AT5G64810.1 46.667 60 31 1 259 318 108 166 1.31e-11 63.9
Msa0241750 AT2G46400.1 39.583 96 46 4 226 316 73 161 1.36e-11 65.9
Msa0241750 AT1G66560.1 49.153 59 28 1 260 316 102 160 1.93e-11 64.7
Msa0241750 AT4G23810.1 49.123 57 27 1 262 316 159 215 3.85e-11 64.7
Msa0241750 AT1G66550.1 32.941 85 55 1 234 316 81 165 6.22e-11 63.2
Msa0241750 AT1G80590.1 32.540 126 78 2 262 385 86 206 9.24e-11 62.4

Find 102 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAAGAAGATTCATAATT+AGG 0.177473 2_2:+17699126 None:intergenic
TGATTAAACAATAGGTTTAA+TGG 0.202593 2_2:+17697030 None:intergenic
ATAATTGATGTTGCTTCTTC+TGG 0.224592 2_2:-17699279 Msa0241750:CDS
ATAACAGCAGAAGGTTTAAT+TGG 0.226101 2_2:+17699081 None:intergenic
TTGTTCTCTTGTTCTTCTTT+TGG 0.236616 2_2:+17697240 None:intergenic
CTTTGTTTCTTCATCAAGTA+TGG 0.245608 2_2:-17699655 Msa0241750:CDS
CATCATAGCCTTCTCTTGTT+TGG 0.267430 2_2:+17696895 None:intergenic
TATATGAAATGAAAGGAATT+TGG 0.271937 2_2:+17699751 None:intergenic
GGTGCATGCATTTAAATTCT+AGG 0.272707 2_2:+17696863 None:intergenic
GGATAAGGTGAACCTTTAAT+AGG 0.279412 2_2:+17698108 None:intergenic
CAAAACCTTGATTAAACAAT+AGG 0.283013 2_2:+17697022 None:intergenic
CAGTGATGGACTTTCTTATA+AGG 0.284819 2_2:-17697115 Msa0241750:CDS
ACTGAGTCCCACATTCCTTT+TGG 0.291123 2_2:-17696304 Msa0241750:three_prime_UTR
CAATGTGAAGGAAGAGAATA+TGG 0.300905 2_2:-17697181 Msa0241750:CDS
CTATTGTTTAATCAAGGTTT+TGG 0.313071 2_2:-17697021 Msa0241750:CDS
TAATTAGGTAACTTTGGATT+AGG 0.313774 2_2:+17699141 None:intergenic
TTGTGGGCTTGGAGAAAATA+TGG 0.327482 2_2:-17698138 Msa0241750:CDS
TCCTTCACATTGTTAACAAC+TGG 0.339482 2_2:+17697192 None:intergenic
TATGGTCAGAAGCCTATTAA+AGG 0.340677 2_2:-17698120 Msa0241750:CDS
AAGAGTGCTGGTTGGTTGAT+TGG 0.341583 2_2:-17696338 Msa0241750:three_prime_UTR
TCTCTTAAAGTTGAGAATAA+TGG 0.344831 2_2:+17699387 None:intergenic
TTCCTTCAGATTTGTGGGCT+TGG 0.351444 2_2:-17698149 Msa0241750:CDS
ATCCATTTCATCTCTTTGAT+TGG 0.356655 2_2:-17696957 Msa0241750:CDS
TGTTATTATTCATCATGGTT+TGG 0.359561 2_2:+17699714 None:intergenic
AAGGAATGTGGGACTCAGTT+TGG 0.363185 2_2:+17696308 None:intergenic
GCAGAAGGTTTAATTGGTCT+TGG 0.364059 2_2:+17699087 None:intergenic
TTTCATCTCTTTGATTGGTC+AGG 0.365054 2_2:-17696952 Msa0241750:CDS
GACCAATCAAAGAGATGAAA+TGG 0.366081 2_2:+17696955 None:intergenic
GATTCATAATTAGGTAACTT+TGG 0.391610 2_2:+17699135 None:intergenic
TAGGTTATAACCAACATGTT+TGG 0.405752 2_2:+17697396 None:intergenic
GTGGTAATTCAAGTAATGAT+AGG 0.407677 2_2:-17696999 Msa0241750:CDS
AAGTAGTTCCTTCAGATTTG+TGG 0.419426 2_2:-17698155 Msa0241750:CDS
ATACTACTCAAGGTCATGTT+TGG 0.422635 2_2:-17696764 Msa0241750:three_prime_UTR
TTCTTGTTATTTACCAGAAA+AGG 0.424080 2_2:-17696394 Msa0241750:three_prime_UTR
GGAACAAACATGAATATGTT+TGG 0.426445 2_2:-17699414 Msa0241750:CDS
GCTAAGGCATTTCTTTGTGT+TGG 0.434825 2_2:+17697348 None:intergenic
AGTAGTTCCTTCAGATTTGT+GGG 0.437348 2_2:-17698154 Msa0241750:CDS
TTAAACCTATTGTTTAATCA+AGG 0.440685 2_2:-17697027 Msa0241750:CDS
ATCTCATCTTCAAGGAATAC+AGG 0.440973 2_2:-17699000 Msa0241750:CDS
TGTCTACTATTTGCAGCTGC+TGG 0.441459 2_2:+17698186 None:intergenic
TTTCTTGTTATTATTCATCA+TGG 0.447837 2_2:+17699709 None:intergenic
CTATTTGCAGCTGCTGGTGC+AGG 0.451080 2_2:+17698192 None:intergenic
ATAATCAGAGGTGGTACTGC+TGG 0.461238 2_2:-17699606 Msa0241750:CDS
CTTAGCATTAATATTGATGT+TGG 0.461905 2_2:+17699053 None:intergenic
AAAGTAACTTACCTTGGATA+AGG 0.462105 2_2:+17698093 None:intergenic
GAGTTCAGATCTCATCTTCA+AGG 0.463546 2_2:-17699008 Msa0241750:CDS
GCTGCAAATAGTAGACAAAC+TGG 0.465679 2_2:-17698180 Msa0241750:CDS
TGGTTCTTCAAATGAGTTGT+TGG 0.473949 2_2:+17696915 None:intergenic
ATGAAATGGATCTAAAACCT+TGG 0.480200 2_2:+17696969 None:intergenic
CCATCCACCAATATTCCAAA+AGG 0.483621 2_2:+17696289 None:intergenic
AGTACTTGTGATGTTGAAGT+AGG 0.496007 2_2:+17699326 None:intergenic
GGTTTAATTGGTCTTGGAGA+AGG 0.498591 2_2:+17699093 None:intergenic
GCAACATCAATTATAGAAGC+AGG 0.500612 2_2:+17699288 None:intergenic
AGATCTTGTTGAACCTGCTA+AGG 0.507584 2_2:+17697332 None:intergenic
TATAGATGCAGCAGTTCAAA+GGG 0.512628 2_2:-17697459 Msa0241750:CDS
CTACAAATTGAGATGGATGA+AGG 0.513528 2_2:-17697144 Msa0241750:CDS
TTATAGATGCAGCAGTTCAA+AGG 0.515496 2_2:-17697460 Msa0241750:CDS
TTGGTTGAAATAACAGCAGA+AGG 0.519861 2_2:+17699072 None:intergenic
TCTGTTCTTGAAGACAATAG+AGG 0.525437 2_2:-17699438 Msa0241750:CDS
CAACATCAATATTAATGCTA+AGG 0.530488 2_2:-17699052 Msa0241750:CDS
ACACAAAGAAATGCCTTAGC+AGG 0.532059 2_2:-17697345 Msa0241750:CDS
GAACAGAAGAGAAACTCAAA+GGG 0.532880 2_2:+17699454 None:intergenic
TGGACTTTCTTATAAGGTGA+TGG 0.535954 2_2:-17697109 Msa0241750:CDS
GCATTTCTTTGTGTTGGCCA+TGG 0.541996 2_2:+17697354 None:intergenic
TTGAGGTAGAAATTGTTGCT+AGG 0.548755 2_2:+17696842 None:intergenic
CTCCAAGCCCACAAATCTGA+AGG 0.549243 2_2:+17698147 None:intergenic
GCTGGAGCATATACTAGTAC+AGG 0.551951 2_2:-17699588 Msa0241750:CDS
CCAATATTCCAAAAGGAATG+TGG 0.553908 2_2:+17696296 None:intergenic
GAGAACAATAATAACAGTGA+TGG 0.557395 2_2:-17697225 Msa0241750:CDS
TCCAGTTGTTAACAATGTGA+AGG 0.558008 2_2:-17697193 Msa0241750:CDS
ATAATGATATTAATTAGAGA+TGG 0.558202 2_2:+17696559 None:intergenic
TTAAAGGTTCACCTTATCCA+AGG 0.571044 2_2:-17698104 Msa0241750:intron
TTGAAGAACCAAACAAGAGA+AGG 0.573435 2_2:-17696903 Msa0241750:CDS
TGGTAATTCAAGTAATGATA+GGG 0.573489 2_2:-17696998 Msa0241750:CDS
AGAACAGAAGAGAAACTCAA+AGG 0.577454 2_2:+17699453 None:intergenic
AGAGAAGCTACAAATTGAGA+TGG 0.578599 2_2:-17697151 Msa0241750:CDS
GCATATATATATGAAATGAA+AGG 0.579416 2_2:+17699744 None:intergenic
CAATATTCCAAAAGGAATGT+GGG 0.593084 2_2:+17696297 None:intergenic
CAGAACTGATCCAAACATGT+TGG 0.596203 2_2:-17697406 Msa0241750:CDS
ATGATTGTGTTCTGAAGTGT+AGG 0.601847 2_2:+17697377 None:intergenic
ACAGAAAGCTGAGGAACAGA+AGG 0.602399 2_2:-17696265 Msa0241750:three_prime_UTR
GGAATACAGGTCTTAAACGA+AGG 0.603168 2_2:-17698987 Msa0241750:intron
ATCATGATCATGATAATCAG+TGG 0.603815 2_2:-17699524 Msa0241750:CDS
GGAAAATAGCAAAATTCATG+AGG 0.604467 2_2:-17697088 Msa0241750:CDS
GTTCAAAGGGATGTTCAGCT+AGG 0.605745 2_2:-17697446 Msa0241750:CDS
TGATGATGATGTGAAACTGC+AGG 0.613240 2_2:+17699543 None:intergenic
GATGAAGGAGAATTCAGTGA+TGG 0.613782 2_2:-17697129 Msa0241750:CDS
TAATGATAGGGATCAATCCA+AGG 0.614402 2_2:-17696986 Msa0241750:CDS
GGTGCTAGCTATACTACTCA+AGG 0.615709 2_2:-17696774 Msa0241750:three_prime_UTR
ATGTTGAAGTAGGAAGAAGA+AGG 0.618243 2_2:+17699336 None:intergenic
CTTCAGAACACAATCATCCA+TGG 0.626675 2_2:-17697371 Msa0241750:CDS
TCAAGTATGGACAATTACCT+AGG 0.636819 2_2:-17699642 Msa0241750:CDS
GTTCTTGAAGACAATAGAGG+AGG 0.649107 2_2:-17699435 Msa0241750:CDS
TGATTTGAAGTGTGTCATGT+GGG 0.652176 2_2:-17696733 Msa0241750:three_prime_UTR
GATTTAACTGACATAATCAG+AGG 0.660960 2_2:-17699618 Msa0241750:CDS
GTGATTTGAAGTGTGTCATG+TGG 0.663585 2_2:-17696734 Msa0241750:three_prime_UTR
TTTGAAGTGTGTCATGTGGG+AGG 0.668706 2_2:-17696730 Msa0241750:three_prime_UTR
GATTCTCTTCTAGACAACAC+AGG 0.690701 2_2:-17699030 Msa0241750:CDS
TTAACTGACATAATCAGAGG+TGG 0.698541 2_2:-17699615 Msa0241750:CDS
GTGGATGGGACAGAAAGCTG+AGG 0.705531 2_2:-17696274 Msa0241750:three_prime_UTR
AAAAGAGAAAGAGTGCTGGT+TGG 0.706845 2_2:-17696346 Msa0241750:three_prime_UTR
TTATGTCAGTTAAATCACCT+AGG 0.732430 2_2:+17699625 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAACTATTAGATT+AGG + chr2_2:17697647-17697666 None:intergenic 10.0%
!!! TTTTTTTTATTTCCTTTTTT+TGG - chr2_2:17697657-17697676 Msa0241750:intron 10.0%
!!! TGTTTCTTATTATTATTTTT+TGG - chr2_2:17698532-17698551 Msa0241750:intron 10.0%
!! TGAAATTAATTATAGTAACA+TGG + chr2_2:17697165-17697184 None:intergenic 15.0%
!!! ATTTTGAAGTAGAAATTTTA+TGG - chr2_2:17697227-17697246 Msa0241750:CDS 15.0%
!!! TTGGTATTCTAAAAATTAAA+AGG + chr2_2:17697577-17697596 None:intergenic 15.0%
!! TGATTTATTCCAATTAAAAT+AGG + chr2_2:17697610-17697629 None:intergenic 15.0%
!! ATAATGATATTAATTAGAGA+TGG + chr2_2:17699475-17699494 None:intergenic 15.0%
!! CAAGAAAAATAAATAAAGTA+GGG + chr2_2:17699623-17699642 None:intergenic 15.0%
!! ACAAGAAAAATAAATAAAGT+AGG + chr2_2:17699624-17699643 None:intergenic 15.0%
!! ATAACAAAAAACATGCAATA+AGG + chr2_2:17696249-17696268 None:intergenic 20.0%
!! TATATGAAATGAAAGGAATT+TGG + chr2_2:17696283-17696302 None:intergenic 20.0%
!! GCATATATATATGAAATGAA+AGG + chr2_2:17696290-17696309 None:intergenic 20.0%
!!! TTTCTTGTTATTATTCATCA+TGG + chr2_2:17696325-17696344 None:intergenic 20.0%
!!! TTTGAGAATATGTTTTTACA+TGG + chr2_2:17696854-17696873 None:intergenic 20.0%
!!! TTTAAGATAAGTTTCTTGAA+AGG + chr2_2:17697485-17697504 None:intergenic 20.0%
!! TCTAAAAATTAAAAGGACTA+TGG + chr2_2:17697570-17697589 None:intergenic 20.0%
!! TTATTCCAATTAAAATAGGT+AGG + chr2_2:17697606-17697625 None:intergenic 20.0%
!! AAAAAACATGTACCAAAAAA+AGG + chr2_2:17697672-17697691 None:intergenic 20.0%
!! TAGCAATTAAAAATACATTG+AGG - chr2_2:17697978-17697997 Msa0241750:intron 20.0%
!! AAGGAAATGATTATAGTTAT+AGG + chr2_2:17698049-17698068 None:intergenic 20.0%
!! TTACAAGTAACAATATACAA+TGG + chr2_2:17698111-17698130 None:intergenic 20.0%
!! AATTAGAGAGATTTCTTAAT+TGG + chr2_2:17698174-17698193 None:intergenic 20.0%
!! TCATTAATTGAAAACCTAAT+AGG + chr2_2:17698232-17698251 None:intergenic 20.0%
!!! ATTTTCATATTCATTGATTG+AGG - chr2_2:17698268-17698287 Msa0241750:intron 20.0%
!!! TGTATTAAGCAATTTTGATT+TGG - chr2_2:17698377-17698396 Msa0241750:intron 20.0%
!! AATATTGTTACGAAACTTAA+AGG + chr2_2:17698417-17698436 None:intergenic 20.0%
!!! ATTATTTTTTGGTTGCTATT+AGG - chr2_2:17698543-17698562 Msa0241750:intron 20.0%
!!! TTATTTTTTGGTTGCTATTA+GGG - chr2_2:17698544-17698563 Msa0241750:intron 20.0%
!! TGATTAAACAATAGGTTTAA+TGG + chr2_2:17699004-17699023 None:intergenic 20.0%
!! TTAAACCTATTGTTTAATCA+AGG - chr2_2:17699004-17699023 Msa0241750:CDS 20.0%
!!! TCTTGCTTTTTAGTATTATT+TGG - chr2_2:17699233-17699252 Msa0241750:CDS 20.0%
!!! TTTCTGATAGTTCAATTTTT+TGG - chr2_2:17699503-17699522 Msa0241750:CDS 20.0%
!!! ATAAGGTTTTTTGGCTATTA+AGG + chr2_2:17696232-17696251 None:intergenic 25.0%
!!! AAACATGCAATAAGGTTTTT+TGG + chr2_2:17696241-17696260 None:intergenic 25.0%
! TGTTATTATTCATCATGGTT+TGG + chr2_2:17696320-17696339 None:intergenic 25.0%
! TCTCTTAAAGTTGAGAATAA+TGG + chr2_2:17696647-17696666 None:intergenic 25.0%
! TGATCAAGTTCTTGTAAAAA+TGG + chr2_2:17696671-17696690 None:intergenic 25.0%
! TAATTAGGTAACTTTGGATT+AGG + chr2_2:17696893-17696912 None:intergenic 25.0%
! GATTCATAATTAGGTAACTT+TGG + chr2_2:17696899-17696918 None:intergenic 25.0%
! GTTGAAGAAGATTCATAATT+AGG + chr2_2:17696908-17696927 None:intergenic 25.0%
! CTTAGCATTAATATTGATGT+TGG + chr2_2:17696981-17697000 None:intergenic 25.0%
! CAACATCAATATTAATGCTA+AGG - chr2_2:17696979-17696998 Msa0241750:CDS 25.0%
!! TAAAATAGGTAGGTATGTTT+TGG + chr2_2:17697596-17697615 None:intergenic 25.0%
!!! ACATACCTACCTATTTTAAT+TGG - chr2_2:17697598-17697617 Msa0241750:intron 25.0%
! TTGTGTAATGAATTAATTGC+AGG - chr2_2:17697786-17697805 Msa0241750:intron 25.0%
! AGATAACAAAAACAACAACA+AGG - chr2_2:17698138-17698157 Msa0241750:CDS 25.0%
! GTTTAATTAAGAAGCCTATT+AGG - chr2_2:17698215-17698234 Msa0241750:CDS 25.0%
!!! TATTTTTTGGTTGCTATTAG+GGG - chr2_2:17698545-17698564 Msa0241750:intron 25.0%
!!! CTTTGTAGAAGTATTGTTTT+TGG + chr2_2:17698732-17698751 None:intergenic 25.0%
! CAAAACCTTGATTAAACAAT+AGG + chr2_2:17699012-17699031 None:intergenic 25.0%
!! CTATTGTTTAATCAAGGTTT+TGG - chr2_2:17699010-17699029 Msa0241750:CDS 25.0%
! TGGTAATTCAAGTAATGATA+GGG - chr2_2:17699033-17699052 Msa0241750:CDS 25.0%
!!! TAACTAGGTCTTTTTTTTTG+AGG + chr2_2:17699209-17699228 None:intergenic 25.0%
!! AAAAAGCAAGATTGATAACT+AGG + chr2_2:17699224-17699243 None:intergenic 25.0%
!!! TGCTTTTTAGTATTATTTGG+TGG - chr2_2:17699236-17699255 Msa0241750:CDS 25.0%
!!! TTCTTGTTATTTACCAGAAA+AGG - chr2_2:17699637-17699656 Msa0241750:CDS 25.0%
AGCAAGAAAAAGCAAGTTTA+GGG + chr2_2:17696209-17696228 None:intergenic 30.0%
! CTTTGTTTCTTCATCAAGTA+TGG - chr2_2:17696376-17696395 Msa0241750:three_prime_UTR 30.0%
TTATGTCAGTTAAATCACCT+AGG + chr2_2:17696409-17696428 None:intergenic 30.0%
GATTTAACTGACATAATCAG+AGG - chr2_2:17696413-17696432 Msa0241750:three_prime_UTR 30.0%
ATCATGATCATGATAATCAG+TGG - chr2_2:17696507-17696526 Msa0241750:three_prime_UTR 30.0%
GGAACAAACATGAATATGTT+TGG - chr2_2:17696617-17696636 Msa0241750:three_prime_UTR 30.0%
! ATAATTGATGTTGCTTCTTC+TGG - chr2_2:17696752-17696771 Msa0241750:three_prime_UTR 30.0%
ATAACAGCAGAAGGTTTAAT+TGG + chr2_2:17696953-17696972 None:intergenic 30.0%
AAGTACTATTGAGAGAAAGT+AGG - chr2_2:17697261-17697280 Msa0241750:CDS 30.0%
AGTACTATTGAGAGAAAGTA+GGG - chr2_2:17697262-17697281 Msa0241750:CDS 30.0%
GTTATCAAGACTATAACATG+TGG - chr2_2:17697363-17697382 Msa0241750:CDS 30.0%
! CATGTGGTTTAATTTCTTTG+AGG - chr2_2:17697379-17697398 Msa0241750:CDS 30.0%
!! AAGAACTAACTCTACTTTTC+AGG + chr2_2:17697426-17697445 None:intergenic 30.0%
!!! TAGGAATTTTCAGGTAGTTA+TGG + chr2_2:17697520-17697539 None:intergenic 30.0%
! TCAAAGGAATAGGAATTTTC+AGG + chr2_2:17697529-17697548 None:intergenic 30.0%
! TTTTTGTGCATGATGATCAA+AGG + chr2_2:17697545-17697564 None:intergenic 30.0%
! TGAAGAGTGAAGTATTTGAT+TGG - chr2_2:17697734-17697753 Msa0241750:intron 30.0%
AAGTATTTGATTGGTGGAAA+TGG - chr2_2:17697743-17697762 Msa0241750:intron 30.0%
AAAGTAACTTACCTTGGATA+AGG + chr2_2:17697941-17697960 None:intergenic 30.0%
TCTAAGAAAGTAACTTACCT+TGG + chr2_2:17697947-17697966 None:intergenic 30.0%
AAACACAGTAGTACATTACA+AGG + chr2_2:17698068-17698087 None:intergenic 30.0%
TTCGTAACAATATTTCCGTT+AGG - chr2_2:17698423-17698442 Msa0241750:intron 30.0%
GAAACAATGTCAAAACCTAA+CGG + chr2_2:17698441-17698460 None:intergenic 30.0%
!! GTTTTGACATTGTTTCAGAT+TGG - chr2_2:17698445-17698464 Msa0241750:intron 30.0%
AATACCTAAACGAGACTTAA+AGG + chr2_2:17698472-17698491 None:intergenic 30.0%
TAGGTTATAACCAACATGTT+TGG + chr2_2:17698638-17698657 None:intergenic 30.0%
!!! GTAGAAGTATTGTTTTTGGA+TGG + chr2_2:17698728-17698747 None:intergenic 30.0%
! TTGTTCTCTTGTTCTTCTTT+TGG + chr2_2:17698794-17698813 None:intergenic 30.0%
GAGAACAATAATAACAGTGA+TGG - chr2_2:17698806-17698825 Msa0241750:intron 30.0%
GGAAAATAGCAAAATTCATG+AGG - chr2_2:17698943-17698962 Msa0241750:intron 30.0%
!! TTGTTTAATCAAGGTTTTGG+TGG - chr2_2:17699013-17699032 Msa0241750:CDS 30.0%
GTGGTAATTCAAGTAATGAT+AGG - chr2_2:17699032-17699051 Msa0241750:CDS 30.0%
! ATGAAATGGATCTAAAACCT+TGG + chr2_2:17699065-17699084 None:intergenic 30.0%
ATCCATTTCATCTCTTTGAT+TGG - chr2_2:17699074-17699093 Msa0241750:CDS 30.0%
!!! AATTTTTTCACTGCCTTTTC+TGG + chr2_2:17699653-17699672 None:intergenic 30.0%
CAATATTCCAAAAGGAATGT+GGG + chr2_2:17699737-17699756 None:intergenic 30.0%
! AGTTTAGGGAACAGGTTTTT+GGG + chr2_2:17696195-17696214 None:intergenic 35.0%
! AAGTTTAGGGAACAGGTTTT+TGG + chr2_2:17696196-17696215 None:intergenic 35.0%
AAAAAGCAAGTTTAGGGAAC+AGG + chr2_2:17696203-17696222 None:intergenic 35.0%
GAGCAAGAAAAAGCAAGTTT+AGG + chr2_2:17696210-17696229 None:intergenic 35.0%
TCAAGTATGGACAATTACCT+AGG - chr2_2:17696389-17696408 Msa0241750:three_prime_UTR 35.0%
TTAACTGACATAATCAGAGG+TGG - chr2_2:17696416-17696435 Msa0241750:three_prime_UTR 35.0%
GAACAGAAGAGAAACTCAAA+GGG + chr2_2:17696580-17696599 None:intergenic 35.0%
AGAACAGAAGAGAAACTCAA+AGG + chr2_2:17696581-17696600 None:intergenic 35.0%
TCTGTTCTTGAAGACAATAG+AGG - chr2_2:17696593-17696612 Msa0241750:three_prime_UTR 35.0%
ATGTTGAAGTAGGAAGAAGA+AGG + chr2_2:17696698-17696717 None:intergenic 35.0%
AGTACTTGTGATGTTGAAGT+AGG + chr2_2:17696708-17696727 None:intergenic 35.0%
GCAACATCAATTATAGAAGC+AGG + chr2_2:17696746-17696765 None:intergenic 35.0%
TTGGTTGAAATAACAGCAGA+AGG + chr2_2:17696962-17696981 None:intergenic 35.0%
ATCTCATCTTCAAGGAATAC+AGG - chr2_2:17697031-17697050 Msa0241750:CDS 35.0%
TATTGAGAGAAAGTAGGGTT+TGG - chr2_2:17697267-17697286 Msa0241750:CDS 35.0%
TGCATGATGATCAAAGGAAT+AGG + chr2_2:17697539-17697558 None:intergenic 35.0%
! AGAGTGAAGTATTTGATTGG+TGG - chr2_2:17697737-17697756 Msa0241750:intron 35.0%
CAGGAAGAATCAAGCAAAAA+AGG - chr2_2:17697805-17697824 Msa0241750:intron 35.0%
GAAGAATCAAGCAAAAAAGG+TGG - chr2_2:17697808-17697827 Msa0241750:intron 35.0%
AAGTAGTTCCTTCAGATTTG+TGG - chr2_2:17697876-17697895 Msa0241750:intron 35.0%
AGTAGTTCCTTCAGATTTGT+GGG - chr2_2:17697877-17697896 Msa0241750:intron 35.0%
TATGGTCAGAAGCCTATTAA+AGG - chr2_2:17697911-17697930 Msa0241750:intron 35.0%
GGATAAGGTGAACCTTTAAT+AGG + chr2_2:17697926-17697945 None:intergenic 35.0%
TTAAAGGTTCACCTTATCCA+AGG - chr2_2:17697927-17697946 Msa0241750:intron 35.0%
CAATGGTCAAGCTAAAAATG+TGG + chr2_2:17698094-17698113 None:intergenic 35.0%
CAAAAACAACAACAAGGCTT+AGG - chr2_2:17698144-17698163 Msa0241750:CDS 35.0%
TTATAGATGCAGCAGTTCAA+AGG - chr2_2:17698571-17698590 Msa0241750:intron 35.0%
TATAGATGCAGCAGTTCAAA+GGG - chr2_2:17698572-17698591 Msa0241750:intron 35.0%
!! ATGATTGTGTTCTGAAGTGT+AGG + chr2_2:17698657-17698676 None:intergenic 35.0%
TCCAGTTGTTAACAATGTGA+AGG - chr2_2:17698838-17698857 Msa0241750:intron 35.0%
TCCTTCACATTGTTAACAAC+TGG + chr2_2:17698842-17698861 None:intergenic 35.0%
CAATGTGAAGGAAGAGAATA+TGG - chr2_2:17698850-17698869 Msa0241750:intron 35.0%
AGAGAAGCTACAAATTGAGA+TGG - chr2_2:17698880-17698899 Msa0241750:intron 35.0%
CTACAAATTGAGATGGATGA+AGG - chr2_2:17698887-17698906 Msa0241750:intron 35.0%
!! CAGTGATGGACTTTCTTATA+AGG - chr2_2:17698916-17698935 Msa0241750:intron 35.0%
TGGACTTTCTTATAAGGTGA+TGG - chr2_2:17698922-17698941 Msa0241750:intron 35.0%
!!! TGAGGACTTTTTTGCTGAAT+TGG - chr2_2:17698961-17698980 Msa0241750:intron 35.0%
!!! GAGGACTTTTTTGCTGAATT+GGG - chr2_2:17698962-17698981 Msa0241750:intron 35.0%
TAATGATAGGGATCAATCCA+AGG - chr2_2:17699045-17699064 Msa0241750:CDS 35.0%
GACCAATCAAAGAGATGAAA+TGG + chr2_2:17699079-17699098 None:intergenic 35.0%
! TTTCATCTCTTTGATTGGTC+AGG - chr2_2:17699079-17699098 Msa0241750:CDS 35.0%
TGGTTCTTCAAATGAGTTGT+TGG + chr2_2:17699119-17699138 None:intergenic 35.0%
TTGAAGAACCAAACAAGAGA+AGG - chr2_2:17699128-17699147 Msa0241750:CDS 35.0%
GGTGCATGCATTTAAATTCT+AGG + chr2_2:17699171-17699190 None:intergenic 35.0%
TTGAGGTAGAAATTGTTGCT+AGG + chr2_2:17699192-17699211 None:intergenic 35.0%
ATACTACTCAAGGTCATGTT+TGG - chr2_2:17699267-17699286 Msa0241750:CDS 35.0%
! TGATTTGAAGTGTGTCATGT+GGG - chr2_2:17699298-17699317 Msa0241750:CDS 35.0%
CCAATATTCCAAAAGGAATG+TGG + chr2_2:17699738-17699757 None:intergenic 35.0%
!!! CCACATTCCTTTTGGAATAT+TGG - chr2_2:17699735-17699754 Msa0241750:five_prime_UTR 35.0%
!!! CATTCCTTTTGGAATATTGG+TGG - chr2_2:17699738-17699757 Msa0241750:five_prime_UTR 35.0%
!!! CTTTTGGAATATTGGTGGAT+GGG - chr2_2:17699743-17699762 Msa0241750:five_prime_UTR 35.0%
!! TTTAGGGAACAGGTTTTTGG+GGG + chr2_2:17696193-17696212 None:intergenic 40.0%
! GTTTAGGGAACAGGTTTTTG+GGG + chr2_2:17696194-17696213 None:intergenic 40.0%
! TGATGATGATGTGAAACTGC+AGG + chr2_2:17696491-17696510 None:intergenic 40.0%
GTTCTTGAAGACAATAGAGG+AGG - chr2_2:17696596-17696615 Msa0241750:three_prime_UTR 40.0%
!! GGTTTAATTGGTCTTGGAGA+AGG + chr2_2:17696941-17696960 None:intergenic 40.0%
! GCAGAAGGTTTAATTGGTCT+TGG + chr2_2:17696947-17696966 None:intergenic 40.0%
GATTCTCTTCTAGACAACAC+AGG - chr2_2:17697001-17697020 Msa0241750:CDS 40.0%
GAGTTCAGATCTCATCTTCA+AGG - chr2_2:17697023-17697042 Msa0241750:CDS 40.0%
GGAATACAGGTCTTAAACGA+AGG - chr2_2:17697044-17697063 Msa0241750:CDS 40.0%
AGTAGGGTTTGGCATAAGTT+AGG - chr2_2:17697278-17697297 Msa0241750:CDS 40.0%
! CTTTTTCTTGTGACTACACG+TGG - chr2_2:17697311-17697330 Msa0241750:CDS 40.0%
ACTACACGTGGCACTATTAA+TGG - chr2_2:17697323-17697342 Msa0241750:CDS 40.0%
GCTGCAAATAGTAGACAAAC+TGG - chr2_2:17697851-17697870 Msa0241750:intron 40.0%
TTGTGGGCTTGGAGAAAATA+TGG - chr2_2:17697893-17697912 Msa0241750:intron 40.0%
TGGTCCTTTAAGTCTCGTTT+AGG - chr2_2:17698465-17698484 Msa0241750:intron 40.0%
CAGAACTGATCCAAACATGT+TGG - chr2_2:17698625-17698644 Msa0241750:intron 40.0%
CTTCAGAACACAATCATCCA+TGG - chr2_2:17698660-17698679 Msa0241750:intron 40.0%
! GCTAAGGCATTTCTTTGTGT+TGG + chr2_2:17698686-17698705 None:intergenic 40.0%
ACACAAAGAAATGCCTTAGC+AGG - chr2_2:17698686-17698705 Msa0241750:intron 40.0%
AGATCTTGTTGAACCTGCTA+AGG + chr2_2:17698702-17698721 None:intergenic 40.0%
!!! GGCTTTGTTGTGTCATTTTG+TGG + chr2_2:17698773-17698792 None:intergenic 40.0%
GATGAAGGAGAATTCAGTGA+TGG - chr2_2:17698902-17698921 Msa0241750:intron 40.0%
CATCATAGCCTTCTCTTGTT+TGG + chr2_2:17699139-17699158 None:intergenic 40.0%
! GTGATTTGAAGTGTGTCATG+TGG - chr2_2:17699297-17699316 Msa0241750:CDS 40.0%
! GTGAAAAAGAGAAAGAGTGC+TGG - chr2_2:17699681-17699700 Msa0241750:exon 40.0%
!! AAAAGAGAAAGAGTGCTGGT+TGG - chr2_2:17699685-17699704 Msa0241750:exon 40.0%
CCATCCACCAATATTCCAAA+AGG + chr2_2:17699745-17699764 None:intergenic 40.0%
!!! CCTTTTGGAATATTGGTGGA+TGG - chr2_2:17699742-17699761 Msa0241750:five_prime_UTR 40.0%
ATAATCAGAGGTGGTACTGC+TGG - chr2_2:17696425-17696444 Msa0241750:three_prime_UTR 45.0%
GCTGGAGCATATACTAGTAC+AGG - chr2_2:17696443-17696462 Msa0241750:three_prime_UTR 45.0%
TGTCTACTATTTGCAGCTGC+TGG + chr2_2:17697848-17697867 None:intergenic 45.0%
TTCCTTCAGATTTGTGGGCT+TGG - chr2_2:17697882-17697901 Msa0241750:intron 45.0%
GTTCAAAGGGATGTTCAGCT+AGG - chr2_2:17698585-17698604 Msa0241750:intron 45.0%
! GCATTTCTTTGTGTTGGCCA+TGG + chr2_2:17698680-17698699 None:intergenic 45.0%
GGTGCTAGCTATACTACTCA+AGG - chr2_2:17699257-17699276 Msa0241750:CDS 45.0%
! TTTGAAGTGTGTCATGTGGG+AGG - chr2_2:17699301-17699320 Msa0241750:CDS 45.0%
!! AAGAGTGCTGGTTGGTTGAT+TGG - chr2_2:17699693-17699712 Msa0241750:five_prime_UTR 45.0%
AAGGAATGTGGGACTCAGTT+TGG + chr2_2:17699726-17699745 None:intergenic 45.0%
! ACTGAGTCCCACATTCCTTT+TGG - chr2_2:17699727-17699746 Msa0241750:five_prime_UTR 45.0%
ACAGAAAGCTGAGGAACAGA+AGG - chr2_2:17699766-17699785 Msa0241750:five_prime_UTR 45.0%
CTCCAAGCCCACAAATCTGA+AGG + chr2_2:17697887-17697906 None:intergenic 50.0%
!! GGGAACAGGTTTTTGGGGGT+TGG + chr2_2:17696189-17696208 None:intergenic 55.0%
CTATTTGCAGCTGCTGGTGC+AGG + chr2_2:17697842-17697861 None:intergenic 55.0%
GTGGATGGGACAGAAAGCTG+AGG - chr2_2:17699757-17699776 Msa0241750:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 17696179 17699874 17696179 ID=Msa0241750;Name=Msa0241750
chr2_2 mRNA 17696179 17699874 17696179 ID=Msa0241750-mRNA-1;Parent=Msa0241750;Name=Msa0241750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=186|1|1|1|1|1|3|718|477
chr2_2 exon 17696179 17697488 17696179 ID=Msa0241750-mRNA-1:exon:7216;Parent=Msa0241750-mRNA-1
chr2_2 exon 17698105 17698245 17698105 ID=Msa0241750-mRNA-1:exon:7215;Parent=Msa0241750-mRNA-1
chr2_2 exon 17698988 17699874 17698988 ID=Msa0241750-mRNA-1:exon:7214;Parent=Msa0241750-mRNA-1
chr2_2 five_prime_UTR 17699689 17699874 17699689 ID=Msa0241750-mRNA-1:five_prime_utr;Parent=Msa0241750-mRNA-1
chr2_2 CDS 17698988 17699688 17698988 ID=Msa0241750-mRNA-1:cds;Parent=Msa0241750-mRNA-1
chr2_2 CDS 17698105 17698245 17698105 ID=Msa0241750-mRNA-1:cds;Parent=Msa0241750-mRNA-1
chr2_2 CDS 17696897 17697488 17696897 ID=Msa0241750-mRNA-1:cds;Parent=Msa0241750-mRNA-1
chr2_2 three_prime_UTR 17696179 17696896 17696179 ID=Msa0241750-mRNA-1:three_prime_utr;Parent=Msa0241750-mRNA-1
Gene Sequence

>Msa0241750

ATGTGTAGTATCTTTGTTTCTTCATCAAGTATGGACAATTACCTAGGTGATTTAACTGACATAATCAGAGGTGGTACTGCTGGAGCATATACTAGTACAGGAACTTCATCATCATCTGCTGAACCTGCAGTTTCACATCATCATCATGATCATGATAATCAGTGGAATCATCATCATCATAATCATCAATTCTCTTCTGATCATCATCATCACCCTTTGAGTTTCTCTTCTGTTCTTGAAGACAATAGAGGAGGAACAAACATGAATATGTTTGGTGATCCATTATTCTCAACTTTAAGAGATCCATTTTTACAAGAACTTGATCATATACCTTCTTCTTCCTACTTCAACATCACAAGTACTACTAGTACTACTTCACCTGCTTCTATAATTGATGTTGCTTCTTCTGGTGTTAGTGTTACTACTTCATCATCTTCTTCTGCTTCTGTTTTTGCACTTGATCATGAGATGAGATCAATATCAAGACCATGTAAAAACATATTCTCAAATATGATTCAGATCTCTCCTAATCCAAAGTTACCTAATTATGAATCTTCTTCAACAATAGCAGCACCTTCTCCAAGACCAATTAAACCTTCTGCTGTTATTTCAACCAACATCAATATTAATGCTAAGGATTCTCTTCTAGACAACACAGGAGTTCAGATCTCATCTTCAAGGAATACAGGTCTTAAACGAAGGAAGAATCAAGCAAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAATAGTAGACAAACTGGAGAAGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAGCCTATTAAAGGTTCACCTTATCCAAGGGGTTATTATAGATGCAGCAGTTCAAAGGGATGTTCAGCTAGGAAACAAGTTGAGAGAAGCAGAACTGATCCAAACATGTTGGTTATAACCTACACTTCAGAACACAATCATCCATGGCCAACACAAAGAAATGCCTTAGCAGGTTCAACAAGATCTCAACCATCCAAAAACAATACTTCTACAAAGAATTCAGAAACATCACAGCCACAAAATGACACAACAAAGCCAAAAGAAGAACAAGAGAACAATAATAACAGTGATGGAAATGATTCTCCAGTTGTTAACAATGTGAAGGAAGAGAATATGGAAGATATAGAGAAGCTACAAATTGAGATGGATGAAGGAGAATTCAGTGATGGACTTTCTTATAAGGTGATGGAAAATAGCAAAATTCATGAGGACTTTTTTGCTGAATTGGGTGAAATTGAAACTGATCCATTAAACCTATTGTTTAATCAAGGTTTTGGTGGTAATTCAAGTAATGATAGGGATCAATCCAAGGTTTTAGATCCATTTCATCTCTTTGATTGGTCAGGTGATAACAACAATACCAACAACTCATTTGAAGAACCAAACAAGAGAAGGCTATGA
Protein sequence

>Msa0241750

MCSIFVSSSSMDNYLGDLTDIIRGGTAGAYTSTGTSSSSAEPAVSHHHHDHDNQWNHHHHNHQFSSDHHHHPLSFSSVLEDNRGGTNMNMFGDPLFSTLRDPFLQELDHIPSSSYFNITSTTSTTSPASIIDVASSGVSVTTSSSSSASVFALDHEMRSISRPCKNIFSNMIQISPNPKLPNYESSSTIAAPSPRPIKPSAVISTNININAKDSLLDNTGVQISSSRNTGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNTSTKNSETSQPQNDTTKPKEEQENNNNSDGNDSPVVNNVKEENMEDIEKLQIEMDEGEFSDGLSYKVMENSKIHEDFFAELGEIETDPLNLLFNQGFGGNSSNDRDQSKVLDPFHLFDWSGDNNNTNNSFEEPNKRRL*