AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 241 sgRNAs with CRISPR-Local

Find 829 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGATTTAATAGATTTC+TGG 0.104631 1_2:+48287123 None:intergenic
TGCACTTCTATACAAGATTA+TGG 0.158802 1_2:-48287764 Msa0074100:three_prime_UTR
AGAAGTTGGGTCTTCTATTT+AGG 0.167561 1_2:+48284093 None:intergenic
CCAGATTGATTCTCACAATT+AGG 0.182320 1_2:+48284200 None:intergenic
TAGTGTCTTGCAGTTGTATT+TGG 0.195227 1_2:-48290282 Msa0074100:CDS
TCCTAACCTGGGATGAGTTT+GGG 0.198333 1_2:-48280935 Msa0074100:three_prime_UTR
CGATGCAACTATTCTGGTTT+TGG 0.215949 1_2:-48291385 Msa0074100:CDS
ATTGCAAGCTTGGAAGATTT+TGG 0.231070 1_2:-48287851 Msa0074100:three_prime_UTR
GATGGTTCCTCCAGTCTTAA+AGG 0.244142 1_2:-48285270 Msa0074100:three_prime_UTR
CTCTCTCCACGTGGCACATT+TGG 0.258607 1_2:-48291824 Msa0074100:five_prime_UTR
TGCTAGCATCATTTGAGTTC+TGG 0.274365 1_2:+48283689 None:intergenic
AGAAAGCGATGCAACTATTC+TGG 0.277886 1_2:-48291391 Msa0074100:CDS
AATGGAAGCAATGGACAAAA+TGG 0.284536 1_2:-48283244 Msa0074100:three_prime_UTR
CTCTCTTATAACTGCAGATT+TGG 0.286096 1_2:+48283627 None:intergenic
TTCCTAACCTGGGATGAGTT+TGG 0.289056 1_2:-48280936 Msa0074100:three_prime_UTR
TGCTAGCAACAACATTGATA+TGG 0.296871 1_2:-48283674 Msa0074100:three_prime_UTR
AAAGGAGTGTCTAGAGAAAA+AGG 0.305223 1_2:-48285252 Msa0074100:three_prime_UTR
CAGATTGATTCTCACAATTA+GGG 0.310638 1_2:+48284201 None:intergenic
AAAACCTGTGGCAGCATGTT+TGG 0.312351 1_2:-48287504 Msa0074100:three_prime_UTR
CCTTGATTTAATAGATTTCT+GGG 0.316876 1_2:+48287124 None:intergenic
AATAATCGGTAATTGAATTA+TGG 0.321560 1_2:+48291648 None:intergenic
GAAGTTGGGTCTTCTATTTA+GGG 0.323812 1_2:+48284094 None:intergenic
GAAGATAATGCGGAAGTTAG+AGG 0.324713 1_2:+48291741 None:intergenic
CTTGCAGTTGTATTTGGGTT+GGG 0.327297 1_2:-48290276 Msa0074100:CDS
AGAAGCTGGTCCTGCAATTC+AGG 0.327601 1_2:-48283988 Msa0074100:three_prime_UTR
GTGGCAATGCCTGGTTTATC+AGG 0.332763 1_2:-48287790 Msa0074100:three_prime_UTR
TGAAAAGTTTGATAACAATT+CGG 0.339114 1_2:-48287096 Msa0074100:three_prime_UTR
GAAAAGTTTGATAACAATTC+GGG 0.346605 1_2:-48287095 Msa0074100:three_prime_UTR
CAGCAAATGGATTGCAAGCT+TGG 0.350061 1_2:-48287861 Msa0074100:three_prime_UTR
TAATGTTGCAGAACCTGAAC+TGG 0.350615 1_2:+48280982 None:intergenic
GCATTTGACACAATGGCGTT+TGG 0.350777 1_2:-48281349 Msa0074100:three_prime_UTR
GATGTCATCTCATGACTCTA+TGG 0.359807 1_2:-48287599 Msa0074100:three_prime_UTR
GACAGCAACAATGGACTTGC+TGG 0.359847 1_2:-48283184 Msa0074100:three_prime_UTR
TTTACATATTAGATCCCTTA+AGG 0.361725 1_2:-48289939 Msa0074100:three_prime_UTR
GAGCAAGATAATGGAAGTTT+AGG 0.362759 1_2:-48287062 Msa0074100:three_prime_UTR
GTAACTTCTAAGCTGTTATT+AGG 0.363149 1_2:+48283766 None:intergenic
TCCCACTGAGAGCCTGATTT+AGG 0.367118 1_2:+48285365 None:intergenic
ACGTGGAGAGAGATATTTCC+AGG 0.369726 1_2:+48291835 None:intergenic
AATTTGCTCATTGAATTTAG+AGG 0.373603 1_2:+48284241 None:intergenic
TTGGTTGTTGATGCCTCTGC+TGG 0.385063 1_2:+48283604 None:intergenic
CTCAAGGGGCAATTATTTGT+TGG 0.386253 1_2:-48289970 Msa0074100:three_prime_UTR
GCACTTCTATACAAGATTAT+GGG 0.386285 1_2:-48287763 Msa0074100:three_prime_UTR
TTTAAGCTCATTCTTGCGTA+TGG 0.388945 1_2:+48287525 None:intergenic
CACTACCATCACCATTGTTC+AGG 0.390653 1_2:+48287039 None:intergenic
TGACAAGGGTTCTGCTACTC+GGG 0.390875 1_2:-48283461 Msa0074100:three_prime_UTR
GGTTATAATTATCGCGAGCT+TGG 0.390997 1_2:-48290207 Msa0074100:CDS
CTGGGTTTGGTCACCGCAAC+GGG 0.391335 1_2:+48281001 None:intergenic
ACAATGGCGTTTGGGATAAC+CGG 0.391367 1_2:-48281340 Msa0074100:three_prime_UTR
TTCCGTTCATCCTGAATTGC+AGG 0.392365 1_2:+48283978 None:intergenic
ACTCCACAAGCAAGACCTTA+AGG 0.392485 1_2:+48289924 None:intergenic
CATTTGACACAATGGCGTTT+GGG 0.392547 1_2:-48281348 Msa0074100:three_prime_UTR
GTTATAATTATCGCGAGCTT+GGG 0.393066 1_2:-48290206 Msa0074100:CDS
GTTGTCAATATCTGAGAAGT+TGG 0.394245 1_2:+48284079 None:intergenic
AGCAATGATGAGCAAGATAA+TGG 0.400711 1_2:-48287071 Msa0074100:three_prime_UTR
GCGGTTCCAGTCAAAATTGC+AGG 0.406686 1_2:-48284296 Msa0074100:intron
GCGGTGACCAAACCCAGTTC+AGG 0.406785 1_2:-48280995 Msa0074100:three_prime_UTR
TGGAGTGACTGATGGAGTTA+AGG 0.413525 1_2:-48290053 Msa0074100:three_prime_UTR
GCATCATTTGAGTTCTGGTT+AGG 0.415598 1_2:+48283694 None:intergenic
GTCAACTTCTACAGCTCGTT+TGG 0.415675 1_2:+48285391 None:intergenic
AAATATTACATGAAGACTTC+TGG 0.415703 1_2:+48281305 None:intergenic
CTCACTTGCATTACCATTCG+AGG 0.416999 1_2:+48281395 None:intergenic
TCAAGGGGCAATTATTTGTT+GGG 0.420288 1_2:-48289969 Msa0074100:three_prime_UTR
TTGGTCAGCGTTTGCGGGAT+GGG 0.420714 1_2:-48290129 Msa0074100:three_prime_UTR
GAAGCAACGCAGTGACAATA+TGG 0.423326 1_2:+48289885 None:intergenic
GTCTTTAAGTGTTTGTCAAA+GGG 0.426456 1_2:-48287571 Msa0074100:three_prime_UTR
TACTACATCATAGTAATAAT+CGG 0.427736 1_2:+48291634 None:intergenic
AAGAACTTGGTCAGCGTTTG+CGG 0.431358 1_2:-48290135 Msa0074100:three_prime_UTR
TTGGGATAACCGGACGGAAA+AGG 0.431972 1_2:-48281330 Msa0074100:three_prime_UTR
CTTCGCAATTGTAGTTATGA+AGG 0.432435 1_2:-48289866 Msa0074100:intron
AGTGTCTTGCAGTTGTATTT+GGG 0.434979 1_2:-48290281 Msa0074100:CDS
CTTTCTTTCCTTCAGTCTAG+TGG 0.435646 1_2:-48287173 Msa0074100:intron
ATCCCTTAAGGTCTTGCTTG+TGG 0.436804 1_2:-48289927 Msa0074100:three_prime_UTR
TTAACTGAGGTGGCAATGCC+TGG 0.438214 1_2:-48287799 Msa0074100:three_prime_UTR
GAAGATTCGGCATCATGCTC+AGG 0.440741 1_2:+48283379 None:intergenic
TTCCCTGCATATTTCAGCAT+TGG 0.441824 1_2:+48285295 None:intergenic
TAAAATGAGATCAATATGAT+TGG 0.443706 1_2:+48287819 None:intergenic
GGAGTTAAGGTTGGTGAGGG+AGG 0.444636 1_2:-48290040 Msa0074100:three_prime_UTR
TTCTACAGCTCGTTTGGTCC+AGG 0.448107 1_2:+48285397 None:intergenic
AACTTAAATGAAGGAGTAGC+TGG 0.450112 1_2:-48290100 Msa0074100:three_prime_UTR
TCTTGCAGTTGTATTTGGGT+TGG 0.452421 1_2:-48290277 Msa0074100:CDS
AATGGACTTGCTGGGAATAG+TGG 0.453499 1_2:-48283175 Msa0074100:three_prime_UTR
TGGGCTGGAAAGCAGACGTT+TGG 0.453554 1_2:+48283572 None:intergenic
AGAACTTGGTCAGCGTTTGC+GGG 0.454509 1_2:-48290134 Msa0074100:three_prime_UTR
TTTCTTTCCTTCAGTCTAGT+GGG 0.456206 1_2:-48287172 Msa0074100:intron
TCTAGACACTCCTTTAAGAC+TGG 0.457847 1_2:+48285260 None:intergenic
AGATTGAGTTGGTGAGGGAT+TGG 0.461397 1_2:+48291770 None:intergenic
TTCCTTCAGTCTAGTGGGAG+TGG 0.461821 1_2:-48287167 Msa0074100:intron
GAAGTTGACAGTCCTAAATC+AGG 0.462528 1_2:-48285377 Msa0074100:three_prime_UTR
CTCCACAAGCAAGACCTTAA+GGG 0.463153 1_2:+48289925 None:intergenic
TCAGTTATTGAAGCAGCAAA+TGG 0.463336 1_2:-48287874 Msa0074100:intron
AGTATCAATAGAAGTGCTTC+AGG 0.463935 1_2:-48283274 Msa0074100:three_prime_UTR
CCTAATTGTGAGAATCAATC+TGG 0.463977 1_2:-48284200 Msa0074100:three_prime_UTR
AGTGCCAGTTGAAGGTAATA+CGG 0.464184 1_2:-48283305 Msa0074100:three_prime_UTR
TGCAGAACCTGAACTGGGTT+TGG 0.466814 1_2:+48280988 None:intergenic
CATCATGCTCAGGTAGCAAC+TGG 0.467241 1_2:+48283389 None:intergenic
AGAGAGAGATTGAGTTGGTG+AGG 0.472417 1_2:+48291764 None:intergenic
CTCTTGAGCTCAGTTTAAAG+AGG 0.474120 1_2:-48284025 Msa0074100:three_prime_UTR
AGTGGTGATGCTAGTGGAAA+TGG 0.475297 1_2:-48283151 Msa0074100:three_prime_UTR
ATTCCAATGCTGAAATATGC+AGG 0.475867 1_2:-48285298 Msa0074100:three_prime_UTR
TTCAATGAGCAAATTAATAG+AGG 0.478804 1_2:-48284233 Msa0074100:three_prime_UTR
TTGCAGTTGTATTTGGGTTG+GGG 0.479778 1_2:-48290275 Msa0074100:CDS
AGTCTTTAAGTGTTTGTCAA+AGG 0.479846 1_2:-48287572 Msa0074100:three_prime_UTR
AGTCACCATTGACACTCATC+TGG 0.480036 1_2:+48290161 None:intergenic
AAGGTTGGTGAGGGAGGGAA+TGG 0.483694 1_2:-48290034 Msa0074100:three_prime_UTR
AGAGGAGAGAGAGATTGAGT+TGG 0.484260 1_2:+48291759 None:intergenic
TTGTCAATATCTGAGAAGTT+GGG 0.484449 1_2:+48284080 None:intergenic
TTAAGCTCATTCTTGCGTAT+GGG 0.487300 1_2:+48287526 None:intergenic
TTTCCCGTATTACCTTCAAC+TGG 0.488361 1_2:+48283301 None:intergenic
TGGGATAACCGGACGGAAAA+GGG 0.489534 1_2:-48281329 Msa0074100:three_prime_UTR
TGAAATATGCAGGGAAAAGA+TGG 0.491685 1_2:-48285288 Msa0074100:three_prime_UTR
AGTGGGAGTGGCAGTGAAAG+TGG 0.491905 1_2:-48287155 Msa0074100:three_prime_UTR
GAGAGAGATTGAGTTGGTGA+GGG 0.494164 1_2:+48291765 None:intergenic
TCAAAACAAGAATTCTCAAA+GGG 0.500542 1_2:-48283110 Msa0074100:three_prime_UTR
CCCAGAAATCTATTAAATCA+AGG 0.500800 1_2:-48287124 Msa0074100:three_prime_UTR
TCATCAAATCATTGCCAACC+TGG 0.502204 1_2:-48291853 Msa0074100:five_prime_UTR
CCTAACCTGGGATGAGTTTG+GGG 0.502579 1_2:-48280934 Msa0074100:three_prime_UTR
AGCAGCGCTGCAATTAATGC+TGG 0.502976 1_2:-48283220 Msa0074100:three_prime_UTR
GCTAGCAACAACATTGATAT+GGG 0.503896 1_2:-48283673 Msa0074100:three_prime_UTR
CCCCAAACTCATCCCAGGTT+AGG 0.504119 1_2:+48280934 None:intergenic
CTTGGTCAGCGTTTGCGGGA+TGG 0.504234 1_2:-48290130 Msa0074100:three_prime_UTR
GGGAGACTTCTTAGCATTGA+AGG 0.505204 1_2:+48283816 None:intergenic
TTATAATAATGACTTAGTAA+TGG 0.506016 1_2:-48291583 Msa0074100:exon
TCCTCCAAACATGCTGCCAC+AGG 0.506809 1_2:+48287500 None:intergenic
TTGACAAGGGTTCTGCTACT+CGG 0.508641 1_2:-48283462 Msa0074100:three_prime_UTR
GTGGTCAAAGTGCCAGTTGA+AGG 0.508886 1_2:-48283313 Msa0074100:three_prime_UTR
ATTTGCTCATTGAATTTAGA+GGG 0.509233 1_2:+48284242 None:intergenic
GGTAAAAGCATTATTAGCAG+TGG 0.510774 1_2:+48283648 None:intergenic
AAAACAGCTATATATATAAG+TGG 0.512540 1_2:+48280885 None:intergenic
GATTGGTGACGTGGATGAAG+TGG 0.512582 1_2:+48291787 None:intergenic
ATGGAAGCAATGGACAAAAT+GGG 0.515017 1_2:-48283243 Msa0074100:three_prime_UTR
AGAGAGGTGCTTTCATAAGC+AGG 0.516010 1_2:-48283044 Msa0074100:intron
CAACATTATAGAGACGGCTT+AGG 0.516236 1_2:-48280967 Msa0074100:three_prime_UTR
GCAAATTAATAGAGGACAGA+TGG 0.519442 1_2:-48284225 Msa0074100:three_prime_UTR
AGAGTTGCTTCCGACACATC+CGG 0.520860 1_2:+48283792 None:intergenic
GGGCAATTATTTGTTGGGAG+AGG 0.522794 1_2:-48289964 Msa0074100:three_prime_UTR
TAGTGATACTTATTATGAGC+TGG 0.524480 1_2:-48291556 Msa0074100:intron
TCATTTGAGTTCTGGTTAGG+AGG 0.525127 1_2:+48283697 None:intergenic
GATGATGAAGTGAAATGTAA+TGG 0.525442 1_2:-48290073 Msa0074100:three_prime_UTR
TTCAGGTTCGATATCAGAGC+AGG 0.528122 1_2:-48281470 Msa0074100:intron
GGAAGCAACAATGGAAGCAA+TGG 0.529487 1_2:-48283253 Msa0074100:three_prime_UTR
GGGAAGAACAACTTAAATGA+AGG 0.530123 1_2:-48290109 Msa0074100:three_prime_UTR
GAGTTAAGGTTGGTGAGGGA+GGG 0.530743 1_2:-48290039 Msa0074100:three_prime_UTR
AACTTGAGCACAAGTGCTGT+CGG 0.532765 1_2:+48285325 None:intergenic
ATGTCATCTCATGACTCTAT+GGG 0.536687 1_2:-48287598 Msa0074100:three_prime_UTR
CTGATCAGTCTGCTTTCTCA+AGG 0.536827 1_2:-48283941 Msa0074100:intron
CTTTGCATTTGAGAGTCAGA+AGG 0.538723 1_2:+48284131 None:intergenic
GTGCCAGTTGAAGGTAATAC+GGG 0.540221 1_2:-48283304 Msa0074100:three_prime_UTR
TACCGCAGCAACAGTCTCAA+GGG 0.542656 1_2:-48289985 Msa0074100:three_prime_UTR
ACTTGAGCACAAGTGCTGTC+GGG 0.543651 1_2:+48285326 None:intergenic
CCTAGAAAAGTTGAAGAAGC+TGG 0.545226 1_2:-48284002 Msa0074100:three_prime_UTR
TTCATTGCAATGTCCACCTG+TGG 0.545322 1_2:-48291905 Msa0074100:five_prime_UTR
ACCTGTGGCAGCATGTTTGG+AGG 0.552529 1_2:-48287501 Msa0074100:three_prime_UTR
GGTATCCAGATGAGTGTCAA+TGG 0.554780 1_2:-48290166 Msa0074100:three_prime_UTR
ACGTGGATAAGATCAAAAGA+AGG 0.556582 1_2:+48291878 None:intergenic
ACATGTCAACAGACTTGATG+TGG 0.557814 1_2:-48284267 Msa0074100:three_prime_UTR
AAGATCTTGAAGATTTAGAT+CGG 0.559348 1_2:+48291929 None:intergenic
ACTGGGTTTGGTCACCGCAA+CGG 0.563586 1_2:+48281000 None:intergenic
GCTATATATATAAGTGGAGA+GGG 0.563591 1_2:+48280891 None:intergenic
GTACCGCAGCAACAGTCTCA+AGG 0.568297 1_2:-48289986 Msa0074100:three_prime_UTR
ATCAAAACAAGAATTCTCAA+AGG 0.571810 1_2:-48283111 Msa0074100:three_prime_UTR
AAATGTAATGGAGTGACTGA+TGG 0.573227 1_2:-48290061 Msa0074100:three_prime_UTR
AAAAGAAGGGTGGCCACAGG+TGG 0.575359 1_2:+48291892 None:intergenic
ATCAAAAGAAGGGTGGCCAC+AGG 0.579564 1_2:+48291889 None:intergenic
GGAGAGAGATATTTCCAGGT+TGG 0.579669 1_2:+48291839 None:intergenic
TGACAATGGTAGTGGCACTC+AGG 0.582901 1_2:-48287018 Msa0074100:intron
GTCCTGCAATTCAGGATGAA+CGG 0.586027 1_2:-48283980 Msa0074100:three_prime_UTR
GATGGAGTTAAGGTTGGTGA+GGG 0.589139 1_2:-48290043 Msa0074100:three_prime_UTR
GTGACTGATGGAGTTAAGGT+TGG 0.591130 1_2:-48290049 Msa0074100:three_prime_UTR
TCCTAAATCAGGCTCTCAGT+GGG 0.591373 1_2:-48285366 Msa0074100:three_prime_UTR
AAGTCTCCCACCGGATGTGT+CGG 0.592788 1_2:-48283802 Msa0074100:three_prime_UTR
AGTGCTTCAGGAAGCAACAA+TGG 0.594073 1_2:-48283262 Msa0074100:three_prime_UTR
AGATACGACAACAACAATCC+TGG 0.594626 1_2:-48283497 Msa0074100:three_prime_UTR
AGCGCTGCAATTAATGCTGG+AGG 0.596114 1_2:-48283217 Msa0074100:three_prime_UTR
TTCCAATGCTGAAATATGCA+GGG 0.597764 1_2:-48285297 Msa0074100:three_prime_UTR
GCATGTTAGCAACATTGCTG+TGG 0.597791 1_2:+48283416 None:intergenic
AGTGCAATGCCTGATAAACC+AGG 0.599268 1_2:+48287781 None:intergenic
CTGTTGTTGCTCCACACTGT+GGG 0.599543 1_2:-48283345 Msa0074100:three_prime_UTR
TTGGTGAGGGATTGGTGACG+TGG 0.601091 1_2:+48291778 None:intergenic
ACTGTTGTTGCTCCACACTG+TGG 0.604864 1_2:-48283346 Msa0074100:three_prime_UTR
TTTGCATTTGAGAGTCAGAA+GGG 0.605063 1_2:+48284132 None:intergenic
TACTTGCTGCTGAACAGAAG+AGG 0.605168 1_2:+48290006 None:intergenic
AATGTTGCAGAACCTGAACT+GGG 0.605954 1_2:+48280983 None:intergenic
GATGCTAGTGGAAATGGAAG+TGG 0.606551 1_2:-48283145 Msa0074100:three_prime_UTR
TGATGGAGTTAAGGTTGGTG+AGG 0.607226 1_2:-48290044 Msa0074100:three_prime_UTR
AAAGAAAGGAGAGAAAAGAG+AGG 0.608085 1_2:-48283060 Msa0074100:three_prime_UTR
ACAAACATAGACAGCAACAA+TGG 0.609596 1_2:-48283193 Msa0074100:three_prime_UTR
ACAGCAACAATGGACTTGCT+GGG 0.609766 1_2:-48283183 Msa0074100:three_prime_UTR
GACAACCCCAAACTCATCCC+AGG 0.610162 1_2:+48280929 None:intergenic
CTTGCTGGGAATAGTGGCAG+TGG 0.611874 1_2:-48283169 Msa0074100:three_prime_UTR
GATATTCAATCTCATTCTAG+TGG 0.613980 1_2:-48283724 Msa0074100:three_prime_UTR
TTTGTGCGACAGTCCTCGAA+TGG 0.614472 1_2:-48281408 Msa0074100:three_prime_UTR
TTTAAACTGAGCTCAAGAGA+TGG 0.614604 1_2:+48284029 None:intergenic
AGCTATATATATAAGTGGAG+AGG 0.615242 1_2:+48280890 None:intergenic
CAACGCAGTGACAATATGGC+GGG 0.615660 1_2:+48289889 None:intergenic
GTTTGGTCACCGCAACGGGT+AGG 0.616084 1_2:+48281005 None:intergenic
TGGTGACGTGGATGAAGTGG+AGG 0.616745 1_2:+48291790 None:intergenic
AATGGTGACTGTAAAGAACT+TGG 0.617086 1_2:-48290148 Msa0074100:three_prime_UTR
GTTCTGCAACATTATAGAGA+CGG 0.618524 1_2:-48280973 Msa0074100:three_prime_UTR
CTCGAATGGTAATGCAAGTG+AGG 0.619394 1_2:-48281394 Msa0074100:three_prime_UTR
GCCCCTTGAGACTGTTGCTG+CGG 0.622409 1_2:+48289983 None:intergenic
ATGTGAGACAACTTGTTGAG+AGG 0.623924 1_2:+48283528 None:intergenic
AAATGAAGGAGTAGCTGGAG+AGG 0.626419 1_2:-48290095 Msa0074100:three_prime_UTR
AGTGGCAGTGGTGATGCTAG+TGG 0.626932 1_2:-48283157 Msa0074100:three_prime_UTR
GAACAACGACCACGATATCG+AGG 0.628327 1_2:-48281435 Msa0074100:three_prime_UTR
GATGGTAGTGACAATGGTAG+TGG 0.629804 1_2:-48287026 Msa0074100:three_prime_UTR
ACAAATTGCCCTCGATATCG+TGG 0.630115 1_2:+48281426 None:intergenic
GTTGCTTCCGACACATCCGG+TGG 0.630609 1_2:+48283795 None:intergenic
TGTTCAAGACCTACCCGTTG+CGG 0.631381 1_2:-48281014 Msa0074100:three_prime_UTR
ACTTCTAAGCTGTTATTAGG+CGG 0.632200 1_2:+48283769 None:intergenic
TTAGGCCTGAACAATGGTGA+TGG 0.633257 1_2:-48287044 Msa0074100:three_prime_UTR
AGATTATGGGCCACCCAACA+CGG 0.633500 1_2:-48287750 Msa0074100:three_prime_UTR
GGCACCACCTAAAATTGACA+AGG 0.635166 1_2:-48283476 Msa0074100:three_prime_UTR
CGTGGATAAGATCAAAAGAA+GGG 0.635974 1_2:+48291879 None:intergenic
CAAAGGTACTAATAATGATG+AGG 0.638016 1_2:-48284057 Msa0074100:three_prime_UTR
ACACTGTGGGTCATCAAATG+TGG 0.640190 1_2:-48283332 Msa0074100:three_prime_UTR
AGACACTCCTTTAAGACTGG+AGG 0.640992 1_2:+48285263 None:intergenic
GCGCTGCAATTAATGCTGGA+GGG 0.641325 1_2:-48283216 Msa0074100:three_prime_UTR
TTTGCTCATTGAATTTAGAG+GGG 0.646894 1_2:+48284243 None:intergenic
GTCCTAAATCAGGCTCTCAG+TGG 0.647285 1_2:-48285367 Msa0074100:three_prime_UTR
AATGGTGATGGTAGTGACAA+TGG 0.650813 1_2:-48287032 Msa0074100:three_prime_UTR
TCACAGAGCATTTGACACAA+TGG 0.656014 1_2:-48281356 Msa0074100:three_prime_UTR
AGACTTCTTAGCATTGAAGG+TGG 0.657516 1_2:+48283819 None:intergenic
AGTTATAAGAGAGCCAGCAG+AGG 0.658218 1_2:-48283617 Msa0074100:three_prime_UTR
TGGCGTTTGGGATAACCGGA+CGG 0.658886 1_2:-48281336 Msa0074100:three_prime_UTR
TTCTCAGATATTGACAACAA+AGG 0.660645 1_2:-48284074 Msa0074100:three_prime_UTR
AATGCTAAGAAGTCTCCCAC+CGG 0.662726 1_2:-48283811 Msa0074100:three_prime_UTR
ACCGCAGCAACAGTCTCAAG+GGG 0.669084 1_2:-48289984 Msa0074100:three_prime_UTR
GGAAGTTTAGGCCTGAACAA+TGG 0.671051 1_2:-48287050 Msa0074100:three_prime_UTR
AACAACGACCACGATATCGA+GGG 0.671078 1_2:-48281434 Msa0074100:three_prime_UTR
GGATAAGATCAAAAGAAGGG+TGG 0.680724 1_2:+48291882 None:intergenic
TTGCTTCCGACACATCCGGT+GGG 0.683631 1_2:+48283796 None:intergenic
GCAACGCAGTGACAATATGG+CGG 0.685975 1_2:+48289888 None:intergenic
CATGTCAACAGACTTGATGT+GGG 0.686791 1_2:-48284266 Msa0074100:three_prime_UTR
GCAATGATTTGATGATGACG+TGG 0.691661 1_2:+48291861 None:intergenic
ACATTTGATGACCCACAGTG+TGG 0.694810 1_2:+48283334 None:intergenic
TCTGACTCTCAAATGCAAAG+CGG 0.707947 1_2:-48284128 Msa0074100:three_prime_UTR
GAGCTTAGGAGAAGATAATG+CGG 0.718976 1_2:+48291731 None:intergenic
CTTGTTGAGAGGTACACATG+AGG 0.720635 1_2:+48283539 None:intergenic
GCACCACCTAAAATTGACAA+GGG 0.725107 1_2:-48283475 Msa0074100:three_prime_UTR
TGGAAATATCTCTCTCCACG+TGG 0.727285 1_2:-48291833 Msa0074100:five_prime_UTR
AATGTTCCAAATGTGCCACG+TGG 0.756293 1_2:+48291818 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTAAGATAAGAT+AGG + chr1_2:48282102-48282121 None:intergenic 10.0%
!! TTATAATAATGACTTAGTAA+TGG - chr1_2:48281096-48281115 Msa0074100:intron 15.0%
!!! TTATTGAAATTTTTAGTGTT+TGG - chr1_2:48281752-48281771 Msa0074100:intron 15.0%
!!! ATATCTCATTTAATCTTTTT+TGG + chr1_2:48283291-48283310 None:intergenic 15.0%
!! AGTATAATATTGTTTATGTT+AGG - chr1_2:48284573-48284592 Msa0074100:intron 15.0%
!! GTATAATATTGTTTATGTTA+GGG - chr1_2:48284574-48284593 Msa0074100:intron 15.0%
!! TAATATATATAGCTATGTAT+TGG + chr1_2:48285272-48285291 None:intergenic 15.0%
!!! TCTATCCAAATTTTTTTAAA+AGG + chr1_2:48285389-48285408 None:intergenic 15.0%
!!! TTATGTATGTAATATTTTGT+TGG - chr1_2:48285692-48285711 Msa0074100:intron 15.0%
!! AAATACTATAAGTCAAATTA+TGG + chr1_2:48286279-48286298 None:intergenic 15.0%
!! AAATTAAAATATTGTACACA+TGG + chr1_2:48287862-48287881 None:intergenic 15.0%
!! TTAAATAAGGAAATTAACAT+AGG + chr1_2:48287899-48287918 None:intergenic 15.0%
!!! ACTTATAAGTATTTTTTTAC+AGG - chr1_2:48288830-48288849 Msa0074100:intron 15.0%
!! CTAATGTGTAATTAAATATT+TGG - chr1_2:48291427-48291446 Msa0074100:intron 15.0%
!! AGAAAATAGTTTGACAAAAA+TGG + chr1_2:48280996-48281015 None:intergenic 20.0%
!! AATAATCGGTAATTGAATTA+TGG + chr1_2:48281034-48281053 None:intergenic 20.0%
!! TACTACATCATAGTAATAAT+CGG + chr1_2:48281048-48281067 None:intergenic 20.0%
!! TTAAGTAATTCACCTTAATT+AGG - chr1_2:48281416-48281435 Msa0074100:three_prime_UTR 20.0%
!! TAAGTAATTCACCTTAATTA+GGG - chr1_2:48281417-48281436 Msa0074100:three_prime_UTR 20.0%
!! TTTCAAAGTTACTTCAATTA+AGG - chr1_2:48281440-48281459 Msa0074100:three_prime_UTR 20.0%
!!! TAATTTTTTCCAAGATAACA+TGG - chr1_2:48281841-48281860 Msa0074100:intron 20.0%
!!! AATTTTTTCCAAGATAACAT+GGG - chr1_2:48281842-48281861 Msa0074100:intron 20.0%
!! TAGCTTATCAAAATAAGAAT+AGG - chr1_2:48281914-48281933 Msa0074100:intron 20.0%
!! TATAAGTTTGTGAGAAAAAA+AGG - chr1_2:48281952-48281971 Msa0074100:intron 20.0%
!!! CTATCATCTATTTTTTGTTA+TGG - chr1_2:48282241-48282260 Msa0074100:intron 20.0%
!!! GTTTTATTGAAATACTCTTA+AGG - chr1_2:48282893-48282912 Msa0074100:intron 20.0%
!!! AATTAATTGAAGAGTATGTT+AGG + chr1_2:48283180-48283199 None:intergenic 20.0%
!! TTCTATGATAATAAATACTC+AGG + chr1_2:48283357-48283376 None:intergenic 20.0%
!!! ATATATTCAAGTGTTGTATT+TGG + chr1_2:48283523-48283542 None:intergenic 20.0%
!! AAAATTAAAGAAAAATAGGC+AGG + chr1_2:48284735-48284754 None:intergenic 20.0%
!! GAGGAAAATTAAAGAAAAAT+AGG + chr1_2:48284739-48284758 None:intergenic 20.0%
!! TAAAATGAGATCAATATGAT+TGG + chr1_2:48284863-48284882 None:intergenic 20.0%
!! TAAAACAGTAATGTAATGTT+AGG + chr1_2:48285239-48285258 None:intergenic 20.0%
!!! ATCCAAATTTTTTTAAAAGG+TGG + chr1_2:48285386-48285405 None:intergenic 20.0%
!!! AAGTTTTTGTGATATTTTCA+TGG - chr1_2:48285428-48285447 Msa0074100:intron 20.0%
!!! TGAAAAGTTTGATAACAATT+CGG - chr1_2:48285583-48285602 Msa0074100:intron 20.0%
!!! ATCTTCTGGAAAAATAATTA+TGG + chr1_2:48285961-48285980 None:intergenic 20.0%
!!! TGTTCTTATTTTTGTCATTT+TGG - chr1_2:48286014-48286033 Msa0074100:intron 20.0%
!! ATAATGATAACTAAGTAGTA+TGG - chr1_2:48286535-48286554 Msa0074100:intron 20.0%
!! TCGTATAATATCTTTATATC+AGG + chr1_2:48286627-48286646 None:intergenic 20.0%
!! ATATAAAGATATTATACGAG+TGG - chr1_2:48286628-48286647 Msa0074100:intron 20.0%
!!! TTTTCAACACAATATAATGT+TGG + chr1_2:48286768-48286787 None:intergenic 20.0%
!!! CATTTTTACATTATGTGAAA+AGG + chr1_2:48286820-48286839 None:intergenic 20.0%
!! TAGTTTAAACTTTAATGCAA+AGG - chr1_2:48286987-48287006 Msa0074100:intron 20.0%
!!! ATAACACAAATACAGTTTTT+GGG + chr1_2:48287525-48287544 None:intergenic 20.0%
!! TTTAAACAATTTCTTCATGA+TGG - chr1_2:48287667-48287686 Msa0074100:intron 20.0%
!!! ATTTAGATTTTGAATTCATC+TGG - chr1_2:48287788-48287807 Msa0074100:three_prime_UTR 20.0%
!!! TTTAGATTTTGAATTCATCT+GGG - chr1_2:48287789-48287808 Msa0074100:three_prime_UTR 20.0%
!! GATAATTTACTGTAAAAATG+CGG - chr1_2:48288364-48288383 Msa0074100:intron 20.0%
!!! ATTCTGAGTTTTTTTGAAAA+TGG - chr1_2:48288787-48288806 Msa0074100:intron 20.0%
!!! TTCTGAGTTTTTTTGAAAAT+GGG - chr1_2:48288788-48288807 Msa0074100:intron 20.0%
!!! TTTTTGGCGAAATTTAATTA+GGG + chr1_2:48289601-48289620 None:intergenic 20.0%
!!! TTTTTTGGCGAAATTTAATT+AGG + chr1_2:48289602-48289621 None:intergenic 20.0%
!! TTATTCATTGAGCTTAAATA+TGG - chr1_2:48289692-48289711 Msa0074100:intron 20.0%
!!! AAAACATCATATTCTTTTGT+GGG + chr1_2:48289724-48289743 None:intergenic 20.0%
!!! AAAAACATCATATTCTTTTG+TGG + chr1_2:48289725-48289744 None:intergenic 20.0%
!!! AGATAGTTTAAACAGTTTTT+GGG + chr1_2:48289880-48289899 None:intergenic 20.0%
!! TAAAATATGCATCCATTATA+AGG - chr1_2:48290714-48290733 Msa0074100:intron 20.0%
!!! TTTTATATATTGCCTTCATA+TGG + chr1_2:48290846-48290865 None:intergenic 20.0%
!! AAAAACTGATATTTGATATG+CGG - chr1_2:48290862-48290881 Msa0074100:intron 20.0%
!! ATGAGAATTAATAGAAACTA+TGG + chr1_2:48291528-48291547 None:intergenic 20.0%
!! AAAACAGCTATATATATAAG+TGG + chr1_2:48291797-48291816 None:intergenic 20.0%
! AAGAAAAAAATGTTGAGCTT+AGG + chr1_2:48280965-48280984 None:intergenic 25.0%
!!! TGAATTTTTGTTTAGTGTGA+AGG - chr1_2:48281254-48281273 Msa0074100:intron 25.0%
!!! TAACTTTGAAACCCTAATTA+AGG + chr1_2:48281431-48281450 None:intergenic 25.0%
! ACTTCAATTAAGGAATAGAT+TGG - chr1_2:48281450-48281469 Msa0074100:three_prime_UTR 25.0%
! AAGCTATAAGCTCAAATAAT+TGG + chr1_2:48281549-48281568 None:intergenic 25.0%
! AAAAAATAAGCCAATCCAAA+CGG - chr1_2:48281638-48281657 Msa0074100:intron 25.0%
! TTTACCAAACAAAGCATATA+AGG + chr1_2:48281713-48281732 None:intergenic 25.0%
!! CTTTGTTTGGTAAAAAATAG+TGG - chr1_2:48281719-48281738 Msa0074100:intron 25.0%
! GGTAAAATTGAGAGAAAAAA+TGG - chr1_2:48281863-48281882 Msa0074100:intron 25.0%
! GAGAAAAAATGGTAAGTTAT+AGG - chr1_2:48281874-48281893 Msa0074100:intron 25.0%
!! ATGACAAAAAAAGACTTGTT+TGG + chr1_2:48281980-48281999 None:intergenic 25.0%
!!! GAACAAAGCCTTTTTAATTT+TGG - chr1_2:48282263-48282282 Msa0074100:intron 25.0%
! TTTACATATTAGATCCCTTA+AGG - chr1_2:48282740-48282759 Msa0074100:intron 25.0%
! TAACATTAAGAACAAACTTG+TGG - chr1_2:48282935-48282954 Msa0074100:intron 25.0%
! ATAATACTACTCTGATTTAC+TGG - chr1_2:48283064-48283083 Msa0074100:three_prime_UTR 25.0%
! ATTTACTGGAATATAAGGAA+TGG - chr1_2:48283078-48283097 Msa0074100:three_prime_UTR 25.0%
! ACTTGTTTCATAAAGATAAG+TGG + chr1_2:48283223-48283242 None:intergenic 25.0%
! TAGAGAGATATCTATACAAT+AGG - chr1_2:48283386-48283405 Msa0074100:three_prime_UTR 25.0%
! GTATTGCAATTTACATACAA+TGG - chr1_2:48283865-48283884 Msa0074100:intron 25.0%
! TACAAATTTCTCAAAACCTT+AGG + chr1_2:48284194-48284213 None:intergenic 25.0%
! ATTAGTCCATGATGTTTAAT+TGG - chr1_2:48284419-48284438 Msa0074100:intron 25.0%
! TTAGTCCATGATGTTTAATT+GGG - chr1_2:48284420-48284439 Msa0074100:intron 25.0%
! AAATTCTAATTCTAGTGAGT+TGG - chr1_2:48284510-48284529 Msa0074100:intron 25.0%
!! TATCAGTATTGAAAATCACT+TGG - chr1_2:48284684-48284703 Msa0074100:intron 25.0%
! ATCTGTTTCAAAAACAATTG+AGG + chr1_2:48284758-48284777 None:intergenic 25.0%
!!! TATTGATCTCATTTTAACTG+AGG - chr1_2:48284867-48284886 Msa0074100:intron 25.0%
! TGGAAAAACTTACTAATTAC+TGG + chr1_2:48284964-48284983 None:intergenic 25.0%
!!! AGCCACCTTTTAAAAAAATT+TGG - chr1_2:48285381-48285400 Msa0074100:three_prime_UTR 25.0%
! GTCATAATTAACAAAGTAAC+TGG + chr1_2:48285477-48285496 None:intergenic 25.0%
! CCTTGATTTAATAGATTTCT+GGG + chr1_2:48285558-48285577 None:intergenic 25.0%
! TCCTTGATTTAATAGATTTC+TGG + chr1_2:48285559-48285578 None:intergenic 25.0%
!! GAAAAGTTTGATAACAATTC+GGG - chr1_2:48285584-48285603 Msa0074100:intron 25.0%
! ATATTATCATTTCATCACGA+TGG - chr1_2:48285765-48285784 Msa0074100:intron 25.0%
! ACTATAAGTCAAATTATGGA+AGG + chr1_2:48286275-48286294 None:intergenic 25.0%
!!! TCCCTCTATTTCTAATTATT+GGG - chr1_2:48286306-48286325 Msa0074100:intron 25.0%
! GTCTTGTATTCCTTTAAATA+GGG + chr1_2:48286476-48286495 None:intergenic 25.0%
!! AGTCTTGTATTCCTTTAAAT+AGG + chr1_2:48286477-48286496 None:intergenic 25.0%
! ACTCTTGATCCTAAATAAAT+AGG - chr1_2:48286494-48286513 Msa0074100:intron 25.0%
! CTCTTGATCCTAAATAAATA+GGG - chr1_2:48286495-48286514 Msa0074100:intron 25.0%
! CATGATTTCCCTATTTATTT+AGG + chr1_2:48286506-48286525 None:intergenic 25.0%
!! TAGTTTGAAACGATTATCTA+AGG - chr1_2:48286562-48286581 Msa0074100:intron 25.0%
! ACTTACTCAAATAAAAGAAG+GGG + chr1_2:48286679-48286698 None:intergenic 25.0%
! CACTTACTCAAATAAAAGAA+GGG + chr1_2:48286680-48286699 None:intergenic 25.0%
! TTTAAACTTTAATGCAAAGG+TGG - chr1_2:48286990-48287009 Msa0074100:intron 25.0%
! GCTAGTATTTGATAAAGTAA+AGG - chr1_2:48287068-48287087 Msa0074100:three_prime_UTR 25.0%
! CCAAATGTTTGATCAATTAA+AGG + chr1_2:48287114-48287133 None:intergenic 25.0%
! CCTTTAATTGATCAAACATT+TGG - chr1_2:48287111-48287130 Msa0074100:three_prime_UTR 25.0%
! TAGTTAGTAATGTCATATAG+AGG - chr1_2:48287192-48287211 Msa0074100:intron 25.0%
!! CATAACACAAATACAGTTTT+TGG + chr1_2:48287526-48287545 None:intergenic 25.0%
!! AACATAACTTGTAATTCAAC+AGG + chr1_2:48287632-48287651 None:intergenic 25.0%
!! GAATTACAAGTTATGTTTTG+TGG - chr1_2:48287635-48287654 Msa0074100:intron 25.0%
! TCATAATGAAAACAATGAAG+AGG + chr1_2:48287706-48287725 None:intergenic 25.0%
! AGGAAATTAACATAGGAATA+GGG + chr1_2:48287892-48287911 None:intergenic 25.0%
! AAGGAAATTAACATAGGAAT+AGG + chr1_2:48287893-48287912 None:intergenic 25.0%
! ATCAGATGCACTATTAAATA+AGG + chr1_2:48287912-48287931 None:intergenic 25.0%
! TATTTAATAGTGCATCTGAT+AGG - chr1_2:48287912-48287931 Msa0074100:intron 25.0%
!!! ATTAGTTTTAATTGCTGATG+TGG - chr1_2:48288032-48288051 Msa0074100:intron 25.0%
! TAATTGCATATACAAATTGC+TGG + chr1_2:48288215-48288234 None:intergenic 25.0%
! ATTTGCTCATTGAATTTAGA+GGG + chr1_2:48288440-48288459 None:intergenic 25.0%
!! AATTTGCTCATTGAATTTAG+AGG + chr1_2:48288441-48288460 None:intergenic 25.0%
! TTCAATGAGCAAATTAATAG+AGG - chr1_2:48288446-48288465 Msa0074100:intron 25.0%
!!! AGTCATTTTCTTTGAAGATT+CGG + chr1_2:48289316-48289335 None:intergenic 25.0%
! ATCAAAACAAGAATTCTCAA+AGG - chr1_2:48289568-48289587 Msa0074100:intron 25.0%
! TCAAAACAAGAATTCTCAAA+GGG - chr1_2:48289569-48289588 Msa0074100:intron 25.0%
! TAAATTTCGCCAAAAAAGAA+AGG - chr1_2:48289605-48289624 Msa0074100:intron 25.0%
!!! GCATATTTTTGTCAGAAATA+GGG + chr1_2:48289785-48289804 None:intergenic 25.0%
!! CAGATAGTTTAAACAGTTTT+TGG + chr1_2:48289881-48289900 None:intergenic 25.0%
! TGTTTAAACTATCTGTTGTA+TGG - chr1_2:48289886-48289905 Msa0074100:three_prime_UTR 25.0%
! TGTTGTATGGATATACTAAT+AGG - chr1_2:48289899-48289918 Msa0074100:three_prime_UTR 25.0%
! AAATCTGTATTTACTGAAGT+TGG + chr1_2:48289973-48289992 None:intergenic 25.0%
! TCAGTAAATACAGATTTCTA+AGG - chr1_2:48289976-48289995 Msa0074100:three_prime_UTR 25.0%
! ATCCTAATTCTACTTCAAAA+GGG + chr1_2:48290436-48290455 None:intergenic 25.0%
! AAAGAATTGATACAGTATGT+TGG - chr1_2:48290474-48290493 Msa0074100:intron 25.0%
! TCAGTTTAACAAAATCTAAC+TGG + chr1_2:48290804-48290823 None:intergenic 25.0%
!! AGATTTTGTTAAACTGAGAA+TGG - chr1_2:48290807-48290826 Msa0074100:intron 25.0%
!! GATTTTGTTAAACTGAGAAT+GGG - chr1_2:48290808-48290827 Msa0074100:intron 25.0%
!!! ACTTCATTTAGTTTTGCTTT+TGG - chr1_2:48290965-48290984 Msa0074100:intron 25.0%
!!! CTTCATTTAGTTTTGCTTTT+GGG - chr1_2:48290966-48290985 Msa0074100:intron 25.0%
! GTTTGGCATTTCTATAAAAT+AGG - chr1_2:48291045-48291064 Msa0074100:intron 25.0%
! ATGTATATTATACTTCACAC+AGG - chr1_2:48291074-48291093 Msa0074100:intron 25.0%
! TGTATATTATACTTCACACA+GGG - chr1_2:48291075-48291094 Msa0074100:intron 25.0%
! AAATATTACATGAAGACTTC+TGG + chr1_2:48291377-48291396 None:intergenic 25.0%
! AGAAGTCTTCATGTAATATT+TGG - chr1_2:48291376-48291395 Msa0074100:CDS 25.0%
! GAAGTCTTCATGTAATATTT+GGG - chr1_2:48291377-48291396 Msa0074100:CDS 25.0%
TAGTGATACTTATTATGAGC+TGG - chr1_2:48281123-48281142 Msa0074100:intron 30.0%
!! GTTTTGGATGTTTATGTTCA+AGG - chr1_2:48281310-48281329 Msa0074100:intron 30.0%
AATAAAACACAGTTATGCAC+AGG + chr1_2:48281382-48281401 None:intergenic 30.0%
AACAAATTGTTACCAACAAG+GGG + chr1_2:48281664-48281683 None:intergenic 30.0%
GAACAAATTGTTACCAACAA+GGG + chr1_2:48281665-48281684 None:intergenic 30.0%
AGAACAAATTGTTACCAACA+AGG + chr1_2:48281666-48281685 None:intergenic 30.0%
! ACTACCTTATATGCTTTGTT+TGG - chr1_2:48281706-48281725 Msa0074100:intron 30.0%
! CAATTTTACCCATGTTATCT+TGG + chr1_2:48281853-48281872 None:intergenic 30.0%
AGGCTTATCAAAAAATGCTA+TGG + chr1_2:48282050-48282069 None:intergenic 30.0%
GATAAAAAATGATAAGCTGC+AGG + chr1_2:48282070-48282089 None:intergenic 30.0%
!!! AGCCTTTTTAATTTTGGTTG+AGG - chr1_2:48282269-48282288 Msa0074100:intron 30.0%
AGCCTCAACCAAAATTAAAA+AGG + chr1_2:48282274-48282293 None:intergenic 30.0%
GGTTGTGTGAGTAAAAAATA+TGG - chr1_2:48282312-48282331 Msa0074100:intron 30.0%
GATGATGAAGTGAAATGTAA+TGG - chr1_2:48282606-48282625 Msa0074100:intron 30.0%
TCTTAAATGCATTTCTAAGC+TGG - chr1_2:48282958-48282977 Msa0074100:intron 30.0%
CTTAAATGCATTTCTAAGCT+GGG - chr1_2:48282959-48282978 Msa0074100:intron 30.0%
CTCTGATTTACTGGAATATA+AGG - chr1_2:48283073-48283092 Msa0074100:three_prime_UTR 30.0%
TCATAAAGATAAGTGGTTCT+TGG + chr1_2:48283216-48283235 None:intergenic 30.0%
ATCTATACAATAGGTTATGC+AGG - chr1_2:48283395-48283414 Msa0074100:three_prime_UTR 30.0%
! AATCTCTTGATGATCATTGA+AGG + chr1_2:48283784-48283803 None:intergenic 30.0%
TTCAATGATCATCAAGAGAT+TGG - chr1_2:48283783-48283802 Msa0074100:three_prime_UTR 30.0%
TTGCAGTAAATAATGTGTGT+TGG + chr1_2:48283817-48283836 None:intergenic 30.0%
ACACACATTATTTACTGCAA+TGG - chr1_2:48283817-48283836 Msa0074100:three_prime_UTR 30.0%
TACAATGGATCAAAATAGAG+TGG - chr1_2:48283880-48283899 Msa0074100:intron 30.0%
ACAATGGATCAAAATAGAGT+GGG - chr1_2:48283881-48283900 Msa0074100:intron 30.0%
AATGCCAAAACATCCTAATT+CGG + chr1_2:48283926-48283945 None:intergenic 30.0%
GAAATTTGTAATCCAGATGA+TGG - chr1_2:48284204-48284223 Msa0074100:three_prime_UTR 30.0%
GTTCAGTTGAAAGAAAACAT+AGG + chr1_2:48284373-48284392 None:intergenic 30.0%
AAAGTAGCTCTTATAAGACT+TGG - chr1_2:48284464-48284483 Msa0074100:intron 30.0%
AAGTAGCTCTTATAAGACTT+GGG - chr1_2:48284465-48284484 Msa0074100:intron 30.0%
TGCACTTCTATACAAGATTA+TGG - chr1_2:48284915-48284934 Msa0074100:intron 30.0%
GCACTTCTATACAAGATTAT+GGG - chr1_2:48284916-48284935 Msa0074100:intron 30.0%
TGCTCAAACCAAACATATAT+AGG + chr1_2:48284991-48285010 None:intergenic 30.0%
TAAAAGAGCTACTCTTTCTA+TGG - chr1_2:48285033-48285052 Msa0074100:intron 30.0%
AGTCTTTAAGTGTTTGTCAA+AGG - chr1_2:48285107-48285126 Msa0074100:intron 30.0%
GTCTTTAAGTGTTTGTCAAA+GGG - chr1_2:48285108-48285127 Msa0074100:intron 30.0%
CCCAGAAATCTATTAAATCA+AGG - chr1_2:48285555-48285574 Msa0074100:intron 30.0%
GACATGTTAAAACTTCTTGT+TGG - chr1_2:48285932-48285951 Msa0074100:intron 30.0%
CAAAAATGAAACACATCTTC+TGG + chr1_2:48285975-48285994 None:intergenic 30.0%
! CAGAAGATGTGTTTCATTTT+TGG - chr1_2:48285973-48285992 Msa0074100:intron 30.0%
CCTAGATGATAATAAGTAAG+TGG + chr1_2:48286252-48286271 None:intergenic 30.0%
CCACTTACTTATTATCATCT+AGG - chr1_2:48286249-48286268 Msa0074100:intron 30.0%
!! CTCCCTCTATTTCTAATTAT+TGG - chr1_2:48286305-48286324 Msa0074100:intron 30.0%
GCCCAATAATTAGAAATAGA+GGG + chr1_2:48286310-48286329 None:intergenic 30.0%
AGCCCAATAATTAGAAATAG+AGG + chr1_2:48286311-48286330 None:intergenic 30.0%
!!! TGAAGTTTTGGGTTTTAGAT+AGG - chr1_2:48286374-48286393 Msa0074100:intron 30.0%
AACACTAACTCCCTATTTAA+AGG - chr1_2:48286463-48286482 Msa0074100:intron 30.0%
TTACTCAAATAAAAGAAGGG+GGG + chr1_2:48286677-48286696 None:intergenic 30.0%
CTTACTCAAATAAAAGAAGG+GGG + chr1_2:48286678-48286697 None:intergenic 30.0%
GCACTTACTCAAATAAAAGA+AGG + chr1_2:48286681-48286700 None:intergenic 30.0%
ATAATGTGTATCAGAGAAGT+AGG - chr1_2:48286705-48286724 Msa0074100:intron 30.0%
TGTTGGAATATTTCACTTCT+CGG + chr1_2:48286751-48286770 None:intergenic 30.0%
ACTTGTAATTGTGTAACTGT+CGG - chr1_2:48286787-48286806 Msa0074100:intron 30.0%
! GCTTTTGTGGAATTAATAAC+AGG - chr1_2:48286940-48286959 Msa0074100:intron 30.0%
AGTTTAAACTAATCCCAACA+CGG + chr1_2:48286978-48286997 None:intergenic 30.0%
! TGAAATTGACAAGCAGTTTT+TGG + chr1_2:48287238-48287257 None:intergenic 30.0%
CTAGAGAAAAAGGAACAAAT+AGG - chr1_2:48287437-48287456 Msa0074100:intron 30.0%
AAAAATAAAACCCACGAGTA+TGG + chr1_2:48287731-48287750 None:intergenic 30.0%
!!! ATACTCGTGGGTTTTATTTT+TGG - chr1_2:48287730-48287749 Msa0074100:intron 30.0%
!!! ATTTTTGGAACTTCATTCAC+CGG - chr1_2:48287745-48287764 Msa0074100:three_prime_UTR 30.0%
ATCTGATAGGATAGAATACT+GGG - chr1_2:48287925-48287944 Msa0074100:intron 30.0%
TATTACTCTGCCCAATATTT+GGG + chr1_2:48287962-48287981 None:intergenic 30.0%
AGAGTAATAGGATAGAATAC+TGG - chr1_2:48287973-48287992 Msa0074100:intron 30.0%
GAGTAATAGGATAGAATACT+GGG - chr1_2:48287974-48287993 Msa0074100:intron 30.0%
TTTGCTCATTGAATTTAGAG+GGG + chr1_2:48288439-48288458 None:intergenic 30.0%
! CAGATTGATTCTCACAATTA+GGG + chr1_2:48288481-48288500 None:intergenic 30.0%
TTGTCAATATCTGAGAAGTT+GGG + chr1_2:48288602-48288621 None:intergenic 30.0%
TTCTCAGATATTGACAACAA+AGG - chr1_2:48288605-48288624 Msa0074100:intron 30.0%
!! CAAAGGTACTAATAATGATG+AGG - chr1_2:48288622-48288641 Msa0074100:intron 30.0%
GTAACTTCTAAGCTGTTATT+AGG + chr1_2:48288916-48288935 None:intergenic 30.0%
GATATTCAATCTCATTCTAG+TGG - chr1_2:48288955-48288974 Msa0074100:intron 30.0%
AGACGTTTGGTACAAAAATT+TGG + chr1_2:48289097-48289116 None:intergenic 30.0%
!!! CACATGAGGTTGTTTTTTAT+GGG + chr1_2:48289129-48289148 None:intergenic 30.0%
!!! ACACATGAGGTTGTTTTTTA+TGG + chr1_2:48289130-48289149 None:intergenic 30.0%
! CTTTTCTCTCCTTTCTTTTT+TGG + chr1_2:48289617-48289636 None:intergenic 30.0%
!! GGCATATTTTTGTCAGAAAT+AGG + chr1_2:48289786-48289805 None:intergenic 30.0%
ATGGATATACTAATAGGAAC+AGG - chr1_2:48289905-48289924 Msa0074100:three_prime_UTR 30.0%
GACATCATACGAAAATATTG+TGG - chr1_2:48289927-48289946 Msa0074100:three_prime_UTR 30.0%
!! TTTGATGTTGAGTTGAACTA+GGG - chr1_2:48290358-48290377 Msa0074100:intron 30.0%
!!! TACCCTTTTGAAGTAGAATT+AGG - chr1_2:48290431-48290450 Msa0074100:intron 30.0%
CATCCTAATTCTACTTCAAA+AGG + chr1_2:48290437-48290456 None:intergenic 30.0%
AAGTAGAATTAGGATGATGT+AGG - chr1_2:48290441-48290460 Msa0074100:intron 30.0%
AACAAGAAATGGAGATAAGA+AGG + chr1_2:48290539-48290558 None:intergenic 30.0%
!! ACAGTTTTATACCTCAAAGA+TGG + chr1_2:48290646-48290665 None:intergenic 30.0%
CTTTGACATATTTCAAGACA+TGG + chr1_2:48290768-48290787 None:intergenic 30.0%
ATGTTCTTGATACCATATGA+AGG - chr1_2:48290831-48290850 Msa0074100:intron 30.0%
ACATTTATCCTCATATGGAT+AGG + chr1_2:48291012-48291031 None:intergenic 30.0%
! TCCTGTTATGATCTGTATTT+TGG - chr1_2:48291163-48291182 Msa0074100:intron 30.0%
TCCAAAATACAGATCATAAC+AGG + chr1_2:48291167-48291186 None:intergenic 30.0%
CTCAACATGATTTGAATTTC+AGG - chr1_2:48291192-48291211 Msa0074100:intron 30.0%
TGTCACAACAGAAATGTATT+CGG + chr1_2:48291456-48291475 None:intergenic 30.0%
GCTATATATATAAGTGGAGA+GGG + chr1_2:48291791-48291810 None:intergenic 30.0%
AGCTATATATATAAGTGGAG+AGG + chr1_2:48291792-48291811 None:intergenic 30.0%
CGTGGATAAGATCAAAAGAA+GGG + chr1_2:48280803-48280822 None:intergenic 35.0%
ACGTGGATAAGATCAAAAGA+AGG + chr1_2:48280804-48280823 None:intergenic 35.0%
TCGTATGACTAAAGTAGACT+TGG - chr1_2:48281583-48281602 Msa0074100:intron 35.0%
CGTATGACTAAAGTAGACTT+GGG - chr1_2:48281584-48281603 Msa0074100:intron 35.0%
GTATGACTAAAGTAGACTTG+GGG - chr1_2:48281585-48281604 Msa0074100:intron 35.0%
AATGCAAGATTTCGAGCTTA+TGG + chr1_2:48282016-48282035 None:intergenic 35.0%
! CGAATTGATTTCGTAGTGTT+TGG + chr1_2:48282194-48282213 None:intergenic 35.0%
TAGTGTCTTGCAGTTGTATT+TGG - chr1_2:48282397-48282416 Msa0074100:intron 35.0%
AGTGTCTTGCAGTTGTATTT+GGG - chr1_2:48282398-48282417 Msa0074100:intron 35.0%
!!! TAGCATTTGCTGTTTTGCTT+TGG - chr1_2:48282440-48282459 Msa0074100:intron 35.0%
GTTATAATTATCGCGAGCTT+GGG - chr1_2:48282473-48282492 Msa0074100:intron 35.0%
! TTGGGCATTTTGAATGACAA+GGG - chr1_2:48282491-48282510 Msa0074100:intron 35.0%
AATGGTGACTGTAAAGAACT+TGG - chr1_2:48282531-48282550 Msa0074100:intron 35.0%
GGGAAGAACAACTTAAATGA+AGG - chr1_2:48282570-48282589 Msa0074100:intron 35.0%
AACTTAAATGAAGGAGTAGC+TGG - chr1_2:48282579-48282598 Msa0074100:intron 35.0%
! AAATGTAATGGAGTGACTGA+TGG - chr1_2:48282618-48282637 Msa0074100:intron 35.0%
TCAAGGGGCAATTATTTGTT+GGG - chr1_2:48282710-48282729 Msa0074100:intron 35.0%
CTTCGCAATTGTAGTTATGA+AGG - chr1_2:48282813-48282832 Msa0074100:intron 35.0%
CTGACAGTTGTAAACAGTTA+GGG + chr1_2:48283434-48283453 None:intergenic 35.0%
ACTGACAGTTGTAAACAGTT+AGG + chr1_2:48283435-48283454 None:intergenic 35.0%
TGTTTACAACTGTCAGTAAC+AGG - chr1_2:48283438-48283457 Msa0074100:three_prime_UTR 35.0%
! AAGTGTTGTATTTGGACCTT+CGG + chr1_2:48283515-48283534 None:intergenic 35.0%
AGGGGGATATTATGAGTATA+GGG + chr1_2:48283549-48283568 None:intergenic 35.0%
AAGGGGGATATTATGAGTAT+AGG + chr1_2:48283550-48283569 None:intergenic 35.0%
ACTGTTTGACAAGTTGTCAT+TGG + chr1_2:48283592-48283611 None:intergenic 35.0%
GTGAATCTTGAAGATAACAG+TGG - chr1_2:48283633-48283652 Msa0074100:three_prime_UTR 35.0%
ACGATACCATTACAAAACCT+GGG + chr1_2:48283847-48283866 None:intergenic 35.0%
TACGATACCATTACAAAACC+TGG + chr1_2:48283848-48283867 None:intergenic 35.0%
!!! GAATTAGGATGTTTTGGCAT+TGG - chr1_2:48283925-48283944 Msa0074100:intron 35.0%
!! GTTTTGGCATTGGAAATCAT+AGG - chr1_2:48283935-48283954 Msa0074100:intron 35.0%
CATTTGTATACTTCGTGGTT+AGG - chr1_2:48284121-48284140 Msa0074100:three_prime_UTR 35.0%
! ATTTGTAATCCAGATGATGG+TGG - chr1_2:48284207-48284226 Msa0074100:three_prime_UTR 35.0%
! ATGGTGGAATAGTAGGAAAT+AGG - chr1_2:48284223-48284242 Msa0074100:three_prime_UTR 35.0%
TGGTGGAATAGTAGGAAATA+GGG - chr1_2:48284224-48284243 Msa0074100:three_prime_UTR 35.0%
! CAATTAACCCTACCGATTAT+GGG + chr1_2:48284312-48284331 None:intergenic 35.0%
CATAGGTATGTAGTTTAAGC+CGG + chr1_2:48284356-48284375 None:intergenic 35.0%
!! AACTGAACCGTTTTGATGAT+GGG - chr1_2:48284385-48284404 Msa0074100:intron 35.0%
AGACTTGGGCAATTCTTAAT+TGG - chr1_2:48284479-48284498 Msa0074100:intron 35.0%
TCATATGTTCAGTGTTAGAC+TGG - chr1_2:48284601-48284620 Msa0074100:intron 35.0%
! TTGGTCTTTGTTTAGTGGAT+TGG - chr1_2:48284637-48284656 Msa0074100:intron 35.0%
!! AGAAAAATAGGCAGGTTGAT+GGG + chr1_2:48284727-48284746 None:intergenic 35.0%
! AAGAAAAATAGGCAGGTTGA+TGG + chr1_2:48284728-48284747 None:intergenic 35.0%
TCAGTTATTGAAGCAGCAAA+TGG - chr1_2:48284805-48284824 Msa0074100:intron 35.0%
! ATTGCAAGCTTGGAAGATTT+TGG - chr1_2:48284828-48284847 Msa0074100:intron 35.0%
!!! TGATCTCATTTTAACTGAGG+TGG - chr1_2:48284870-48284889 Msa0074100:intron 35.0%
TCCAAGTGCCTATATATGTT+TGG - chr1_2:48284980-48284999 Msa0074100:intron 35.0%
ACCAAACATATATAGGCACT+TGG + chr1_2:48284984-48285003 None:intergenic 35.0%
ACTCTTTCTATGGCTTCTAA+TGG - chr1_2:48285043-48285062 Msa0074100:intron 35.0%
CTCTTTCTATGGCTTCTAAT+GGG - chr1_2:48285044-48285063 Msa0074100:intron 35.0%
ATGTCATCTCATGACTCTAT+GGG - chr1_2:48285081-48285100 Msa0074100:intron 35.0%
TTAAGCTCATTCTTGCGTAT+GGG + chr1_2:48285156-48285175 None:intergenic 35.0%
TTTAAGCTCATTCTTGCGTA+TGG + chr1_2:48285157-48285176 None:intergenic 35.0%
AGAATGAGCTTAAAAACCTG+TGG - chr1_2:48285163-48285182 Msa0074100:intron 35.0%
!!! TGACAACGTTGATTTTGCAA+AGG + chr1_2:48285326-48285345 None:intergenic 35.0%
TGGATTGTATGAAATGACAC+AGG - chr1_2:48285448-48285467 Msa0074100:intron 35.0%
TTTCTTTCCTTCAGTCTAGT+GGG - chr1_2:48285507-48285526 Msa0074100:intron 35.0%
AGCAATGATGAGCAAGATAA+TGG - chr1_2:48285608-48285627 Msa0074100:intron 35.0%
!! GAGCAAGATAATGGAAGTTT+AGG - chr1_2:48285617-48285636 Msa0074100:intron 35.0%
TTGTTGGAAAATCTCATGCA+TGG - chr1_2:48285708-48285727 Msa0074100:intron 35.0%
TATCATTTCATCACGATGGT+TGG - chr1_2:48285769-48285788 Msa0074100:intron 35.0%
ATCATTTCATCACGATGGTT+GGG - chr1_2:48285770-48285789 Msa0074100:intron 35.0%
AAACTCTAGATACCACTTCA+GGG + chr1_2:48285869-48285888 None:intergenic 35.0%
AAACCTAACCTGGAAAAACT+TGG - chr1_2:48285899-48285918 Msa0074100:intron 35.0%
ACAAAAATAAGAACACGCAG+AGG + chr1_2:48286009-48286028 None:intergenic 35.0%
!!! TTGTCATTTTGGACGTCTTA+TGG - chr1_2:48286025-48286044 Msa0074100:intron 35.0%
! TCTCTAAATGGTGCTAAAAG+CGG + chr1_2:48286051-48286070 None:intergenic 35.0%
AGCACCATTTAGAGAGATTT+AGG - chr1_2:48286056-48286075 Msa0074100:intron 35.0%
GCAACCTAAATCTCTCTAAA+TGG + chr1_2:48286063-48286082 None:intergenic 35.0%
!!! TTTTTGAGACTGGAAACACA+AGG + chr1_2:48286112-48286131 None:intergenic 35.0%
TTTCCAGTCTCAAAAACCTT+TGG - chr1_2:48286116-48286135 Msa0074100:intron 35.0%
ATAATTGTACGTCGAGGAAA+AGG + chr1_2:48286171-48286190 None:intergenic 35.0%
! TATTGTGGTGGTTGAAGTTT+TGG - chr1_2:48286362-48286381 Msa0074100:intron 35.0%
! ATTGTGGTGGTTGAAGTTTT+GGG - chr1_2:48286363-48286382 Msa0074100:intron 35.0%
CTTGTAATTGTGTAACTGTC+GGG - chr1_2:48286788-48286807 Msa0074100:intron 35.0%
TTGTAATTGTGTAACTGTCG+GGG - chr1_2:48286789-48286808 Msa0074100:intron 35.0%
! TAATTCCACAAAAGCCGTTT+TGG + chr1_2:48286935-48286954 None:intergenic 35.0%
CAAACAGAAAACACTACAGA+AGG - chr1_2:48287144-48287163 Msa0074100:three_prime_UTR 35.0%
TAGCTTAACAAGAAGACAGA+TGG + chr1_2:48287170-48287189 None:intergenic 35.0%
ATTCCAATGCTGAAATATGC+AGG - chr1_2:48287381-48287400 Msa0074100:intron 35.0%
TTCCAATGCTGAAATATGCA+GGG - chr1_2:48287382-48287401 Msa0074100:intron 35.0%
TGAAATATGCAGGGAAAAGA+TGG - chr1_2:48287391-48287410 Msa0074100:intron 35.0%
!! AAAGGAGTGTCTAGAGAAAA+AGG - chr1_2:48287427-48287446 Msa0074100:intron 35.0%
CTGTATTTGTGTTATGCTTG+TGG - chr1_2:48287530-48287549 Msa0074100:three_prime_UTR 35.0%
CAGTCAAAATCAAGAAAAGC+TGG + chr1_2:48287578-48287597 None:intergenic 35.0%
TACATGTTCGCTATATGTTG+AGG + chr1_2:48287607-48287626 None:intergenic 35.0%
TCATTATGATACCATACTCG+TGG - chr1_2:48287717-48287736 Msa0074100:intron 35.0%
CATTATGATACCATACTCGT+GGG - chr1_2:48287718-48287737 Msa0074100:intron 35.0%
CATCTGATAGGATAGAATAC+TGG - chr1_2:48287924-48287943 Msa0074100:intron 35.0%
ATAGGATAGAATACTGGGTT+GGG - chr1_2:48287930-48287949 Msa0074100:intron 35.0%
CTATTACTCTGCCCAATATT+TGG + chr1_2:48287963-48287982 None:intergenic 35.0%
CAAATATTGGGCAGAGTAAT+AGG - chr1_2:48287961-48287980 Msa0074100:intron 35.0%
AATAGGATAGAATACTGGGT+TGG - chr1_2:48287978-48287997 Msa0074100:intron 35.0%
ATAGGATAGAATACTGGGTT+GGG - chr1_2:48287930-48287949 Msa0074100:intron 35.0%
CTTTACTCTGCCCAATATTT+GGG + chr1_2:48288011-48288030 None:intergenic 35.0%
TCTTTACTCTGCCCAATATT+TGG + chr1_2:48288012-48288031 None:intergenic 35.0%
AACACATAATCCACAAAACG+AGG + chr1_2:48288286-48288305 None:intergenic 35.0%
!! TTTGAACCTGCAATTTTGAC+TGG + chr1_2:48288392-48288411 None:intergenic 35.0%
GCAAATTAATAGAGGACAGA+TGG - chr1_2:48288454-48288473 Msa0074100:intron 35.0%
! CCAGATTGATTCTCACAATT+AGG + chr1_2:48288482-48288501 None:intergenic 35.0%
CCTAATTGTGAGAATCAATC+TGG - chr1_2:48288479-48288498 Msa0074100:intron 35.0%
TTTGCATTTGAGAGTCAGAA+GGG + chr1_2:48288550-48288569 None:intergenic 35.0%
GAAGTTGGGTCTTCTATTTA+GGG + chr1_2:48288588-48288607 None:intergenic 35.0%
AGAAGTTGGGTCTTCTATTT+AGG + chr1_2:48288589-48288608 None:intergenic 35.0%
GTTGTCAATATCTGAGAAGT+TGG + chr1_2:48288603-48288622 None:intergenic 35.0%
TTTAAACTGAGCTCAAGAGA+TGG + chr1_2:48288653-48288672 None:intergenic 35.0%
TTTCTCAAGGTATGGTGATT+TGG - chr1_2:48288751-48288770 Msa0074100:intron 35.0%
!! TGGTGATTTGGTGTTATGTT+TGG - chr1_2:48288763-48288782 Msa0074100:intron 35.0%
ACTTCTAAGCTGTTATTAGG+CGG + chr1_2:48288913-48288932 None:intergenic 35.0%
TGCTAGCAACAACATTGATA+TGG - chr1_2:48289005-48289024 Msa0074100:intron 35.0%
GCTAGCAACAACATTGATAT+GGG - chr1_2:48289006-48289025 Msa0074100:intron 35.0%
!! GGTAAAAGCATTATTAGCAG+TGG + chr1_2:48289034-48289053 None:intergenic 35.0%
CTCTCTTATAACTGCAGATT+TGG + chr1_2:48289055-48289074 None:intergenic 35.0%
! CATTGCTGTGGTTTTCATAA+TGG + chr1_2:48289254-48289273 None:intergenic 35.0%
!! AGTATCAATAGAAGTGCTTC+AGG - chr1_2:48289405-48289424 Msa0074100:intron 35.0%
AATGGAAGCAATGGACAAAA+TGG - chr1_2:48289435-48289454 Msa0074100:intron 35.0%
ATGGAAGCAATGGACAAAAT+GGG - chr1_2:48289436-48289455 Msa0074100:intron 35.0%
ACAAACATAGACAGCAACAA+TGG - chr1_2:48289486-48289505 Msa0074100:intron 35.0%
AAAGAAAGGAGAGAAAAGAG+AGG - chr1_2:48289619-48289638 Msa0074100:intron 35.0%
TTTCATAAGCAGGTAAACTG+AGG - chr1_2:48289645-48289664 Msa0074100:intron 35.0%
GCTACACATTTAAGGACTAA+AGG + chr1_2:48289807-48289826 None:intergenic 35.0%
! ATTTACTGAAGTTGGTCTCT+GGG + chr1_2:48289965-48289984 None:intergenic 35.0%
! TATTTACTGAAGTTGGTCTC+TGG + chr1_2:48289966-48289985 None:intergenic 35.0%
TGGGATAAATACATATGGTG+GGG + chr1_2:48290130-48290149 None:intergenic 35.0%
GTGGGATAAATACATATGGT+GGG + chr1_2:48290131-48290150 None:intergenic 35.0%
GAAGGTGGGATAAATACATA+TGG + chr1_2:48290135-48290154 None:intergenic 35.0%
TATGTATTTATCCCACCTTC+TGG - chr1_2:48290135-48290154 Msa0074100:three_prime_UTR 35.0%
GAAAAGAGAATACCAAGAGA+AGG + chr1_2:48290220-48290239 None:intergenic 35.0%
! CTTTTCCCTGATTGTATCAT+AGG - chr1_2:48290234-48290253 Msa0074100:CDS 35.0%
AACCTCCTATGATACAATCA+GGG + chr1_2:48290242-48290261 None:intergenic 35.0%
ATGTAAGAGAGTAGAACCTA+AGG + chr1_2:48290271-48290290 None:intergenic 35.0%
AAAGCTCAAGCTCAAATACT+CGG + chr1_2:48290307-48290326 None:intergenic 35.0%
!! CTTTGATGTTGAGTTGAACT+AGG - chr1_2:48290357-48290376 Msa0074100:intron 35.0%
!! AGTTGAACTAGGGCTTTATT+TGG - chr1_2:48290368-48290387 Msa0074100:intron 35.0%
!! GTTGAACTAGGGCTTTATTT+GGG - chr1_2:48290369-48290388 Msa0074100:intron 35.0%
AGTATATACCTCACTCTACT+GGG + chr1_2:48290406-48290425 None:intergenic 35.0%
TGTTGGACTATACACTACTT+TGG - chr1_2:48290491-48290510 Msa0074100:intron 35.0%
ATGGAGATAAGAAGGAAATG+CGG + chr1_2:48290531-48290550 None:intergenic 35.0%
! TCCATTTCTTGTTTCTTTCC+CGG - chr1_2:48290546-48290565 Msa0074100:intron 35.0%
!! CATTTGTTTGCCTTTTGGAA+TGG + chr1_2:48290575-48290594 None:intergenic 35.0%
! CACATCATTTGTTTGCCTTT+TGG + chr1_2:48290580-48290599 None:intergenic 35.0%
ACCTTATTCAACCATCTTTG+AGG - chr1_2:48290632-48290651 Msa0074100:intron 35.0%
ACCTCAAAGATGGTTGAATA+AGG + chr1_2:48290636-48290655 None:intergenic 35.0%
GGTAGATGATGAATAAAACC+AGG - chr1_2:48290883-48290902 Msa0074100:intron 35.0%
!! AGAAATGCCAAACTTGCTAT+CGG + chr1_2:48291038-48291057 None:intergenic 35.0%
TGCATGTTTCCATCATTATG+TGG - chr1_2:48291101-48291120 Msa0074100:intron 35.0%
TGTTTCCATCATTATGTGGA+CGG - chr1_2:48291105-48291124 Msa0074100:intron 35.0%
GAATACACGAAGAAACAGAA+CGG + chr1_2:48291405-48291424 None:intergenic 35.0%
GTCACAACAGAAATGTATTC+GGG + chr1_2:48291455-48291474 None:intergenic 35.0%
GTTCTGCAACATTATAGAGA+CGG - chr1_2:48291706-48291725 Msa0074100:five_prime_UTR 35.0%
GGATAAGATCAAAAGAAGGG+TGG + chr1_2:48280800-48280819 None:intergenic 40.0%
!! GCAATGATTTGATGATGACG+TGG + chr1_2:48280821-48280840 None:intergenic 40.0%
TCATCAAATCATTGCCAACC+TGG - chr1_2:48280826-48280845 Msa0074100:three_prime_UTR 40.0%
GAAGATAATGCGGAAGTTAG+AGG + chr1_2:48280941-48280960 None:intergenic 40.0%
GAGCTTAGGAGAAGATAATG+CGG + chr1_2:48280951-48280970 None:intergenic 40.0%
AGAAAGCGATGCAACTATTC+TGG - chr1_2:48281288-48281307 Msa0074100:intron 40.0%
!!! CGATGCAACTATTCTGGTTT+TGG - chr1_2:48281294-48281313 Msa0074100:intron 40.0%
GTTATGCACAGGAAGAAGAT+TGG + chr1_2:48281371-48281390 None:intergenic 40.0%
ACAACCCAACTAAACATCCA+TGG + chr1_2:48282298-48282317 None:intergenic 40.0%
TCTTGCAGTTGTATTTGGGT+TGG - chr1_2:48282402-48282421 Msa0074100:intron 40.0%
! CTTGCAGTTGTATTTGGGTT+GGG - chr1_2:48282403-48282422 Msa0074100:intron 40.0%
!! TTGCAGTTGTATTTGGGTTG+GGG - chr1_2:48282404-48282423 Msa0074100:intron 40.0%
!!! TTGCTGTTTTGCTTTGGATG+AGG - chr1_2:48282446-48282465 Msa0074100:intron 40.0%
!! TGTTTTGCTTTGGATGAGGA+CGG - chr1_2:48282450-48282469 Msa0074100:intron 40.0%
GGTTATAATTATCGCGAGCT+TGG - chr1_2:48282472-48282491 Msa0074100:intron 40.0%
! CTTGGGCATTTTGAATGACA+AGG - chr1_2:48282490-48282509 Msa0074100:intron 40.0%
! TGGGCATTTTGAATGACAAG+GGG - chr1_2:48282492-48282511 Msa0074100:intron 40.0%
CTCAAGGGGCAATTATTTGT+TGG - chr1_2:48282709-48282728 Msa0074100:intron 40.0%
ACAACTGTCAGTAACAGGAT+TGG - chr1_2:48283443-48283462 Msa0074100:three_prime_UTR 40.0%
TCATGCTGTAAGCCCTTTAA+GGG + chr1_2:48283489-48283508 None:intergenic 40.0%
AGTGTTGTATTTGGACCTTC+GGG + chr1_2:48283514-48283533 None:intergenic 40.0%
GGGGGATATTATGAGTATAG+GGG + chr1_2:48283548-48283567 None:intergenic 40.0%
GCAAAAGTGACTCTCAATCA+AGG + chr1_2:48283745-48283764 None:intergenic 40.0%
CTAATTCGGTTCCAATTGCA+TGG + chr1_2:48283912-48283931 None:intergenic 40.0%
CATGCAATTGGAACCGAATT+AGG - chr1_2:48283910-48283929 Msa0074100:intron 40.0%
! GGAACCGAATTAGGATGTTT+TGG - chr1_2:48283919-48283938 Msa0074100:intron 40.0%
TCAAACATGGCTTCACCAAA+GGG + chr1_2:48283971-48283990 None:intergenic 40.0%
TTTGGTGAAGCCATGTTTGA+GGG - chr1_2:48283971-48283990 Msa0074100:three_prime_UTR 40.0%
TACAAATGCATGGACTCTAG+TGG + chr1_2:48284109-48284128 None:intergenic 40.0%
CCACGAAGTATACAAATGCA+TGG + chr1_2:48284119-48284138 None:intergenic 40.0%
CCATGCATTTGTATACTTCG+TGG - chr1_2:48284116-48284135 Msa0074100:three_prime_UTR 40.0%
TCAAAGGAATGCATCTTCCT+GGG + chr1_2:48284154-48284173 None:intergenic 40.0%
AGAGTTGCCATTAACTGTGA+TGG - chr1_2:48284247-48284266 Msa0074100:three_prime_UTR 40.0%
GAGTTGCCATTAACTGTGAT+GGG - chr1_2:48284248-48284267 Msa0074100:three_prime_UTR 40.0%
! CCAATTAACCCTACCGATTA+TGG + chr1_2:48284313-48284332 None:intergenic 40.0%
CCATAATCGGTAGGGTTAAT+TGG - chr1_2:48284310-48284329 Msa0074100:intron 40.0%
!! TTAATTGGCTTGAGCAAGCA+AGG - chr1_2:48284325-48284344 Msa0074100:intron 40.0%
!! CAACTGAACCGTTTTGATGA+TGG - chr1_2:48284384-48284403 Msa0074100:intron 40.0%
CCTCATACCCATCATCAAAA+CGG + chr1_2:48284395-48284414 None:intergenic 40.0%
! AAGAGCTACTTTGACCTAGA+AGG + chr1_2:48284456-48284475 None:intergenic 40.0%
!!! GTGAGTTGGTATTTTGCTTG+TGG - chr1_2:48284524-48284543 Msa0074100:intron 40.0%
!! GCTTGTTGGTCTTTGTTTAG+TGG - chr1_2:48284632-48284651 Msa0074100:intron 40.0%
! CTGGAATGTTTTTCCGTGTT+GGG + chr1_2:48284945-48284964 None:intergenic 40.0%
! ACTGGAATGTTTTTCCGTGT+TGG + chr1_2:48284946-48284965 None:intergenic 40.0%
TCTATGGCTTCTAATGGGAT+TGG - chr1_2:48285049-48285068 Msa0074100:intron 40.0%
GATGTCATCTCATGACTCTA+TGG - chr1_2:48285080-48285099 Msa0074100:intron 40.0%
CTTTCTTTCCTTCAGTCTAG+TGG - chr1_2:48285506-48285525 Msa0074100:intron 40.0%
!! AATGGTGATGGTAGTGACAA+TGG - chr1_2:48285647-48285666 Msa0074100:intron 40.0%
CAAACTCTAGATACCACTTC+AGG + chr1_2:48285870-48285889 None:intergenic 40.0%
! CTGAAGTGGTATCTAGAGTT+TGG - chr1_2:48285868-48285887 Msa0074100:intron 40.0%
! GAACCAAGTTTTTCCAGGTT+AGG + chr1_2:48285905-48285924 None:intergenic 40.0%
! CAGTAGAACCAAGTTTTTCC+AGG + chr1_2:48285910-48285929 None:intergenic 40.0%
!!! ATGCCAAAGGTTTTTGAGAC+TGG + chr1_2:48286122-48286141 None:intergenic 40.0%
! GAAGATTTGGAGTGATGACT+GGG + chr1_2:48286196-48286215 None:intergenic 40.0%
! TGAAGATTTGGAGTGATGAC+TGG + chr1_2:48286197-48286216 None:intergenic 40.0%
!! ATGATGGAGCCAAAGTATTG+TGG - chr1_2:48286347-48286366 Msa0074100:intron 40.0%
CTTCAACCACCACAATACTT+TGG + chr1_2:48286359-48286378 None:intergenic 40.0%
AAAACTGCCGCATTCCAAAA+CGG - chr1_2:48286918-48286937 Msa0074100:intron 40.0%
!!! ACAAAAGCCGTTTTGGAATG+CGG + chr1_2:48286928-48286947 None:intergenic 40.0%
ATCTGCCTGACTAACAAGAA+AGG - chr1_2:48287026-48287045 Msa0074100:three_prime_UTR 40.0%
AACTGCCTTTCTTGTTAGTC+AGG + chr1_2:48287034-48287053 None:intergenic 40.0%
GAAGTTGACAGTCCTAAATC+AGG - chr1_2:48287302-48287321 Msa0074100:intron 40.0%
TTCCCTGCATATTTCAGCAT+TGG + chr1_2:48287387-48287406 None:intergenic 40.0%
!! TCTAGACACTCCTTTAAGAC+TGG + chr1_2:48287422-48287441 None:intergenic 40.0%
TCCTCTAATGCATTACTTGC+CGG + chr1_2:48287767-48287786 None:intergenic 40.0%
GATAGGATAGAATACTGGGT+TGG - chr1_2:48287929-48287948 Msa0074100:intron 40.0%
CATTGCTTTCTCTAACGAAC+TGG + chr1_2:48288058-48288077 None:intergenic 40.0%
TCCTATTTCCTCCATCACTT+GGG + chr1_2:48288099-48288118 None:intergenic 40.0%
TTCCTATTTCCTCCATCACT+TGG + chr1_2:48288100-48288119 None:intergenic 40.0%
ATGTGCATACACAAGCACAT+AGG + chr1_2:48288242-48288261 None:intergenic 40.0%
GTCAACTTTCAACTCTTACG+TGG + chr1_2:48288325-48288344 None:intergenic 40.0%
ACATGTCAACAGACTTGATG+TGG - chr1_2:48288412-48288431 Msa0074100:intron 40.0%
CATGTCAACAGACTTGATGT+GGG - chr1_2:48288413-48288432 Msa0074100:intron 40.0%
CTTTGCATTTGAGAGTCAGA+AGG + chr1_2:48288551-48288570 None:intergenic 40.0%
TCTGACTCTCAAATGCAAAG+CGG - chr1_2:48288551-48288570 Msa0074100:intron 40.0%
CTCTTGAGCTCAGTTTAAAG+AGG - chr1_2:48288654-48288673 Msa0074100:intron 40.0%
! CCAGCTTCTTCAACTTTTCT+AGG + chr1_2:48288680-48288699 None:intergenic 40.0%
CCTAGAAAAGTTGAAGAAGC+TGG - chr1_2:48288677-48288696 Msa0074100:intron 40.0%
! AGACTTCTTAGCATTGAAGG+TGG + chr1_2:48288863-48288882 None:intergenic 40.0%
! TCATTTGAGTTCTGGTTAGG+AGG + chr1_2:48288985-48289004 None:intergenic 40.0%
! GCATCATTTGAGTTCTGGTT+AGG + chr1_2:48288988-48289007 None:intergenic 40.0%
! TGCTAGCATCATTTGAGTTC+TGG + chr1_2:48288993-48289012 None:intergenic 40.0%
!!! TGAGGTTGTTTTTTATGGGC+TGG + chr1_2:48289125-48289144 None:intergenic 40.0%
!! ATGTGAGACAACTTGTTGAG+AGG + chr1_2:48289154-48289173 None:intergenic 40.0%
AGATACGACAACAACAATCC+TGG - chr1_2:48289182-48289201 Msa0074100:intron 40.0%
GCACCACCTAAAATTGACAA+GGG - chr1_2:48289204-48289223 Msa0074100:intron 40.0%
! GAACCCTTGTCAATTTTAGG+TGG + chr1_2:48289210-48289229 None:intergenic 40.0%
! GCAGAACCCTTGTCAATTTT+AGG + chr1_2:48289213-48289232 None:intergenic 40.0%
AGTGCCAGTTGAAGGTAATA+CGG - chr1_2:48289374-48289393 Msa0074100:intron 40.0%
TTTCCCGTATTACCTTCAAC+TGG + chr1_2:48289381-48289400 None:intergenic 40.0%
ATTAGAATCCTGCTATGCAC+AGG - chr1_2:48290042-48290061 Msa0074100:three_prime_UTR 40.0%
TTAGAATCCTGCTATGCACA+GGG - chr1_2:48290043-48290062 Msa0074100:three_prime_UTR 40.0%
GTGGGGAATACAAAAGAGTA+GGG + chr1_2:48290113-48290132 None:intergenic 40.0%
GGTGGGATAAATACATATGG+TGG + chr1_2:48290132-48290151 None:intergenic 40.0%
TTCCCTGATTGTATCATAGG+AGG - chr1_2:48290237-48290256 Msa0074100:CDS 40.0%
CAACCTCCTATGATACAATC+AGG + chr1_2:48290243-48290262 None:intergenic 40.0%
CTGATTGTATCATAGGAGGT+TGG - chr1_2:48290241-48290260 Msa0074100:CDS 40.0%
AAGCTCAAGCTCAAATACTC+GGG + chr1_2:48290306-48290325 None:intergenic 40.0%
!! GCTTGAGCTTTTAGAAGAGT+TGG - chr1_2:48290316-48290335 Msa0074100:intron 40.0%
CAGTATATACCTCACTCTAC+TGG + chr1_2:48290407-48290426 None:intergenic 40.0%
TGGAGATAAGAAGGAAATGC+GGG + chr1_2:48290530-48290549 None:intergenic 40.0%
TCCGGGAAAGAAACAAGAAA+TGG + chr1_2:48290550-48290569 None:intergenic 40.0%
!!! TTGCCTTTTGGAATGGAATC+CGG + chr1_2:48290568-48290587 None:intergenic 40.0%
GAGATTATCACTAACTGCAG+TGG - chr1_2:48290671-48290690 Msa0074100:intron 40.0%
TGTGGCAGGAATCCTTATAA+TGG + chr1_2:48290729-48290748 None:intergenic 40.0%
GATGAATAAAACCAGGACTG+AGG - chr1_2:48290890-48290909 Msa0074100:intron 40.0%
!! TTTTGGGTCACCAAAAGTTG+AGG - chr1_2:48290982-48291001 Msa0074100:intron 40.0%
! GATAGGTGAACCTCAACTTT+TGG + chr1_2:48290995-48291014 None:intergenic 40.0%
CAGACTACTGCTCTACAAAT+TGG - chr1_2:48291130-48291149 Msa0074100:intron 40.0%
! TCACAGAGCATTTGACACAA+TGG - chr1_2:48291323-48291342 Msa0074100:intron 40.0%
CATTTGACACAATGGCGTTT+GGG - chr1_2:48291331-48291350 Msa0074100:intron 40.0%
TGTGTAGTTCATCAACCAAC+TGG - chr1_2:48291584-48291603 Msa0074100:exon 40.0%
GCACACAAAAAGTAACCAGT+TGG + chr1_2:48291602-48291621 None:intergenic 40.0%
!!! ACTGGTTACTTTTTGTGTGC+AGG - chr1_2:48291602-48291621 Msa0074100:five_prime_UTR 40.0%
!!! CTGGTTACTTTTTGTGTGCA+GGG - chr1_2:48291603-48291622 Msa0074100:five_prime_UTR 40.0%
!! CTTGAACAGCGCTTGTTTTT+AGG + chr1_2:48291653-48291672 None:intergenic 40.0%
AATGTTGCAGAACCTGAACT+GGG + chr1_2:48291699-48291718 None:intergenic 40.0%
TAATGTTGCAGAACCTGAAC+TGG + chr1_2:48291700-48291719 None:intergenic 40.0%
CAACATTATAGAGACGGCTT+AGG - chr1_2:48291712-48291731 Msa0074100:five_prime_UTR 40.0%
! AGGATCACATTTTCCTAACC+TGG - chr1_2:48291732-48291751 Msa0074100:five_prime_UTR 40.0%
! GGATCACATTTTCCTAACCT+GGG - chr1_2:48291733-48291752 Msa0074100:five_prime_UTR 40.0%
TTCATTGCAATGTCCACCTG+TGG - chr1_2:48280774-48280793 Msa0074100:three_prime_UTR 45.0%
GGAGAGAGATATTTCCAGGT+TGG + chr1_2:48280843-48280862 None:intergenic 45.0%
ACGTGGAGAGAGATATTTCC+AGG + chr1_2:48280847-48280866 None:intergenic 45.0%
TGGAAATATCTCTCTCCACG+TGG - chr1_2:48280846-48280865 Msa0074100:three_prime_UTR 45.0%
AATGTTCCAAATGTGCCACG+TGG + chr1_2:48280864-48280883 None:intergenic 45.0%
!! AGATTGAGTTGGTGAGGGAT+TGG + chr1_2:48280912-48280931 None:intergenic 45.0%
!! GAGAGAGATTGAGTTGGTGA+GGG + chr1_2:48280917-48280936 None:intergenic 45.0%
!! AGAGAGAGATTGAGTTGGTG+AGG + chr1_2:48280918-48280937 None:intergenic 45.0%
AGAGGAGAGAGAGATTGAGT+TGG + chr1_2:48280923-48280942 None:intergenic 45.0%
TGAGCAGAAAGAGCTCTGTT+TGG - chr1_2:48281518-48281537 Msa0074100:intron 45.0%
AGAAAGAGCTCTGTTTGGCA+AGG - chr1_2:48281523-48281542 Msa0074100:intron 45.0%
AGACTTGGGGCTGTTTAGAT+TGG - chr1_2:48281598-48281617 Msa0074100:intron 45.0%
!!! AATTTTGGTTGAGGCTGCCA+TGG - chr1_2:48282278-48282297 Msa0074100:intron 45.0%
GCTGCCATGGATGTTTAGTT+GGG - chr1_2:48282291-48282310 Msa0074100:intron 45.0%
!! GTTTTGCTTTGGATGAGGAC+GGG - chr1_2:48282451-48282470 Msa0074100:intron 45.0%
GGTATCCAGATGAGTGTCAA+TGG - chr1_2:48282513-48282532 Msa0074100:intron 45.0%
AGTCACCATTGACACTCATC+TGG + chr1_2:48282521-48282540 None:intergenic 45.0%
AAGAACTTGGTCAGCGTTTG+CGG - chr1_2:48282544-48282563 Msa0074100:intron 45.0%
AAATGAAGGAGTAGCTGGAG+AGG - chr1_2:48282584-48282603 Msa0074100:intron 45.0%
TGGAGTGACTGATGGAGTTA+AGG - chr1_2:48282626-48282645 Msa0074100:intron 45.0%
GTGACTGATGGAGTTAAGGT+TGG - chr1_2:48282630-48282649 Msa0074100:intron 45.0%
!! TGATGGAGTTAAGGTTGGTG+AGG - chr1_2:48282635-48282654 Msa0074100:intron 45.0%
!! GATGGAGTTAAGGTTGGTGA+GGG - chr1_2:48282636-48282655 Msa0074100:intron 45.0%
! TACTTGCTGCTGAACAGAAG+AGG + chr1_2:48282676-48282695 None:intergenic 45.0%
! GGGCAATTATTTGTTGGGAG+AGG - chr1_2:48282715-48282734 Msa0074100:intron 45.0%
ATCCCTTAAGGTCTTGCTTG+TGG - chr1_2:48282752-48282771 Msa0074100:intron 45.0%
CTCCACAAGCAAGACCTTAA+GGG + chr1_2:48282757-48282776 None:intergenic 45.0%
ACTCCACAAGCAAGACCTTA+AGG + chr1_2:48282758-48282777 None:intergenic 45.0%
GAAGCAACGCAGTGACAATA+TGG + chr1_2:48282797-48282816 None:intergenic 45.0%
AGAAGTAGAGCCACCCTTAA+AGG - chr1_2:48283473-48283492 Msa0074100:three_prime_UTR 45.0%
GAAGTAGAGCCACCCTTAAA+GGG - chr1_2:48283474-48283493 Msa0074100:three_prime_UTR 45.0%
CTCATGCTGTAAGCCCTTTA+AGG + chr1_2:48283490-48283509 None:intergenic 45.0%
CTTAAAGGGCTTACAGCATG+AGG - chr1_2:48283488-48283507 Msa0074100:three_prime_UTR 45.0%
CATAATATCCCCCTTTGAGC+TGG - chr1_2:48283555-48283574 Msa0074100:three_prime_UTR 45.0%
TGTTAGCAACATTCGTGCTC+AGG + chr1_2:48283685-48283704 None:intergenic 45.0%
GAGCACGAATGTTGCTAACA+AGG - chr1_2:48283685-48283704 Msa0074100:three_prime_UTR 45.0%
TTTACTGCAATGGAGATCCC+AGG - chr1_2:48283827-48283846 Msa0074100:three_prime_UTR 45.0%
!! GGAGATCCCAGGTTTTGTAA+TGG - chr1_2:48283838-48283857 Msa0074100:intron 45.0%
AGTGGGATCATCCATGCAAT+TGG - chr1_2:48283898-48283917 Msa0074100:intron 45.0%
CTCAAACATGGCTTCACCAA+AGG + chr1_2:48283972-48283991 None:intergenic 45.0%
CTTTGGTGAAGCCATGTTTG+AGG - chr1_2:48283970-48283989 Msa0074100:three_prime_UTR 45.0%
ATGAACCAATCCCTAGTCAC+TGG + chr1_2:48284033-48284052 None:intergenic 45.0%
!! AGTGACTAGGGATTGGTTCA+TGG - chr1_2:48284032-48284051 Msa0074100:three_prime_UTR 45.0%
CTCAAAGGAATGCATCTTCC+TGG + chr1_2:48284155-48284174 None:intergenic 45.0%
GGAAGATGCATTCCTTTGAG+TGG - chr1_2:48284155-48284174 Msa0074100:three_prime_UTR 45.0%
CCTACTATTCCACCATCATC+TGG + chr1_2:48284219-48284238 None:intergenic 45.0%
!! CCAGATGATGGTGGAATAGT+AGG - chr1_2:48284216-48284235 Msa0074100:three_prime_UTR 45.0%
! TTGCCATTAACTGTGATGGG+TGG - chr1_2:48284251-48284270 Msa0074100:three_prime_UTR 45.0%
CAACCACCCATCACAGTTAA+TGG + chr1_2:48284257-48284276 None:intergenic 45.0%
ATGGGTGGTTGCAAGAAGTT+AGG - chr1_2:48284266-48284285 Msa0074100:three_prime_UTR 45.0%
GAAGTTAGGTGGCCATAAGA+AGG - chr1_2:48284280-48284299 Msa0074100:three_prime_UTR 45.0%
TATGGGACCATGCCTTCTTA+TGG + chr1_2:48284295-48284314 None:intergenic 45.0%
! AGAAGGCATGGTCCCATAAT+CGG - chr1_2:48284297-48284316 Msa0074100:intron 45.0%
!!! CCGTTTTGATGATGGGTATG+AGG - chr1_2:48284392-48284411 Msa0074100:intron 45.0%
GCGTGCCCAATTAAACATCA+TGG + chr1_2:48284428-48284447 None:intergenic 45.0%
!! AAAATAGGCAGGTTGATGGG+AGG + chr1_2:48284724-48284743 None:intergenic 45.0%
!! CAGCAAATGGATTGCAAGCT+TGG - chr1_2:48284818-48284837 Msa0074100:intron 45.0%
! GCAAGCTTGGAAGATTTTGG+AGG - chr1_2:48284831-48284850 Msa0074100:intron 45.0%
AGTGCAATGCCTGATAAACC+AGG + chr1_2:48284901-48284920 None:intergenic 45.0%
! GAATGTTTTTCCGTGTTGGG+TGG + chr1_2:48284942-48284961 None:intergenic 45.0%
AAAACCTGTGGCAGCATGTT+TGG - chr1_2:48285175-48285194 Msa0074100:intron 45.0%
GGAAGTTTAGGCCTGAACAA+TGG - chr1_2:48285629-48285648 Msa0074100:intron 45.0%
TTAGGCCTGAACAATGGTGA+TGG - chr1_2:48285635-48285654 Msa0074100:intron 45.0%
CACTACCATCACCATTGTTC+AGG + chr1_2:48285643-48285662 None:intergenic 45.0%
! GATGGTAGTGACAATGGTAG+TGG - chr1_2:48285653-48285672 Msa0074100:intron 45.0%
! TGTTTTCCTCTTCCCTGAAG+TGG - chr1_2:48285854-48285873 Msa0074100:intron 45.0%
TAGATACCACTTCAGGGAAG+AGG + chr1_2:48285863-48285882 None:intergenic 45.0%
TAAGAACACGCAGAGGAGTT+TGG + chr1_2:48286002-48286021 None:intergenic 45.0%
CTTCAGCATAGCTCAACCTT+GGG - chr1_2:48286086-48286105 Msa0074100:intron 45.0%
TTTGGCATGTCCTCATTCGT+GGG - chr1_2:48286134-48286153 Msa0074100:intron 45.0%
TGGGTGATAATTGTACGTCG+AGG + chr1_2:48286177-48286196 None:intergenic 45.0%
ATCCCCCTCACTTTGTATGA+TGG - chr1_2:48286331-48286350 Msa0074100:intron 45.0%
CTCCATCATACAAAGTGAGG+GGG + chr1_2:48286336-48286355 None:intergenic 45.0%
GCTCCATCATACAAAGTGAG+GGG + chr1_2:48286337-48286356 None:intergenic 45.0%
GGCTCCATCATACAAAGTGA+GGG + chr1_2:48286338-48286357 None:intergenic 45.0%
TGGCTCCATCATACAAAGTG+AGG + chr1_2:48286339-48286358 None:intergenic 45.0%
!! ATGGAGCCAAAGTATTGTGG+TGG - chr1_2:48286350-48286369 Msa0074100:intron 45.0%
ATACGAGTGGTGTAACATGC+TGG - chr1_2:48286641-48286660 Msa0074100:intron 45.0%
CAACTTAAGAGCCTAAGCCT+AGG - chr1_2:48286873-48286892 Msa0074100:intron 45.0%
TTAAGAGCCTAAGCCTAGGA+AGG - chr1_2:48286877-48286896 Msa0074100:intron 45.0%
TACAGAACTTCCACCTTCCT+AGG + chr1_2:48286893-48286912 None:intergenic 45.0%
! GCATTCCAAAACGGCTTTTG+TGG - chr1_2:48286927-48286946 Msa0074100:intron 45.0%
GTGTAGAAGAATGCCGTGTT+GGG - chr1_2:48286962-48286981 Msa0074100:intron 45.0%
GTCAACTTCTACAGCTCGTT+TGG + chr1_2:48287291-48287310 None:intergenic 45.0%
TCCTAAATCAGGCTCTCAGT+GGG - chr1_2:48287313-48287332 Msa0074100:intron 45.0%
! AACTTGAGCACAAGTGCTGT+CGG + chr1_2:48287357-48287376 None:intergenic 45.0%
GATGGTTCCTCCAGTCTTAA+AGG - chr1_2:48287409-48287428 Msa0074100:intron 45.0%
!! AGACACTCCTTTAAGACTGG+AGG + chr1_2:48287419-48287438 None:intergenic 45.0%
GAAAGAGTTTATGCAGCGAC+AGG + chr1_2:48287489-48287508 None:intergenic 45.0%
ACCGGCAAGTAATGCATTAG+AGG - chr1_2:48287763-48287782 Msa0074100:three_prime_UTR 45.0%
TTGGGCCTTAGCCCAAATAT+TGG - chr1_2:48287948-48287967 Msa0074100:intron 45.0%
TGGGCCTTAGCCCAAATATT+GGG - chr1_2:48287949-48287968 Msa0074100:intron 45.0%
TCTGCCCAATATTTGGGCTA+AGG + chr1_2:48287956-48287975 None:intergenic 45.0%
TTGGGCCTTAGCCCAAATAT+TGG - chr1_2:48287948-48287967 Msa0074100:intron 45.0%
TGGGCCTTAGCCCAAATATT+GGG - chr1_2:48287949-48287968 Msa0074100:intron 45.0%
TCTGCCCAATATTTGGGCTA+AGG + chr1_2:48287956-48287975 None:intergenic 45.0%
GTCCTGCAATTCAGGATGAA+CGG - chr1_2:48288699-48288718 Msa0074100:intron 45.0%
TTCCGTTCATCCTGAATTGC+AGG + chr1_2:48288704-48288723 None:intergenic 45.0%
CTGATCAGTCTGCTTTCTCA+AGG - chr1_2:48288738-48288757 Msa0074100:intron 45.0%
CAGTCTGCTTTCTCAAGGTA+TGG - chr1_2:48288743-48288762 Msa0074100:intron 45.0%
! GGGAGACTTCTTAGCATTGA+AGG + chr1_2:48288866-48288885 None:intergenic 45.0%
AATGCTAAGAAGTCTCCCAC+CGG - chr1_2:48288868-48288887 Msa0074100:intron 45.0%
AGTTATAAGAGAGCCAGCAG+AGG - chr1_2:48289062-48289081 Msa0074100:intron 45.0%
! CTTGTTGAGAGGTACACATG+AGG + chr1_2:48289143-48289162 None:intergenic 45.0%
!! TGTCAATTTTAGGTGGTGCC+AGG + chr1_2:48289203-48289222 None:intergenic 45.0%
GGCACCACCTAAAATTGACA+AGG - chr1_2:48289203-48289222 Msa0074100:intron 45.0%
TTGACAAGGGTTCTGCTACT+CGG - chr1_2:48289217-48289236 Msa0074100:intron 45.0%
GCATGTTAGCAACATTGCTG+TGG + chr1_2:48289266-48289285 None:intergenic 45.0%
! ACATTTGATGACCCACAGTG+TGG + chr1_2:48289348-48289367 None:intergenic 45.0%
ACACTGTGGGTCATCAAATG+TGG - chr1_2:48289347-48289366 Msa0074100:intron 45.0%
GTGCCAGTTGAAGGTAATAC+GGG - chr1_2:48289375-48289394 Msa0074100:intron 45.0%
AGTGCTTCAGGAAGCAACAA+TGG - chr1_2:48289417-48289436 Msa0074100:intron 45.0%
GGAAGCAACAATGGAAGCAA+TGG - chr1_2:48289426-48289445 Msa0074100:intron 45.0%
! ACAGCAACAATGGACTTGCT+GGG - chr1_2:48289496-48289515 Msa0074100:intron 45.0%
!! AATGGACTTGCTGGGAATAG+TGG - chr1_2:48289504-48289523 Msa0074100:intron 45.0%
! AGTGGTGATGCTAGTGGAAA+TGG - chr1_2:48289528-48289547 Msa0074100:intron 45.0%
GATGCTAGTGGAAATGGAAG+TGG - chr1_2:48289534-48289553 Msa0074100:intron 45.0%
!! AGAGAGGTGCTTTCATAAGC+AGG - chr1_2:48289635-48289654 Msa0074100:intron 45.0%
!!! TGGGGTTTTTTTTTGGGGGA+GGG + chr1_2:48289832-48289851 None:intergenic 45.0%
!!! TTGGGGTTTTTTTTTGGGGG+AGG + chr1_2:48289833-48289852 None:intergenic 45.0%
!!! GGGTTGGGGTTTTTTTTTGG+GGG + chr1_2:48289836-48289855 None:intergenic 45.0%
!!! GGGGTTGGGGTTTTTTTTTG+GGG + chr1_2:48289837-48289856 None:intergenic 45.0%
!!! GGGGGTTGGGGTTTTTTTTT+GGG + chr1_2:48289838-48289857 None:intergenic 45.0%
!!! TGGGGGTTGGGGTTTTTTTT+TGG + chr1_2:48289839-48289858 None:intergenic 45.0%
AGAGTAGGGAAAGAATCGAG+AGG + chr1_2:48290099-48290118 None:intergenic 45.0%
GGTGGGGAATACAAAAGAGT+AGG + chr1_2:48290114-48290133 None:intergenic 45.0%
GTATTTATCCCACCTTCTGG+TGG - chr1_2:48290138-48290157 Msa0074100:three_prime_UTR 45.0%
CAGTATTACCACCAGAAGGT+GGG + chr1_2:48290149-48290168 None:intergenic 45.0%
CTTGCAGTATTACCACCAGA+AGG + chr1_2:48290153-48290172 None:intergenic 45.0%
ATAGGAGGTTGGATCTCCTT+AGG - chr1_2:48290252-48290271 Msa0074100:CDS 45.0%
TTCCCGGATTCCATTCCAAA+AGG - chr1_2:48290562-48290581 Msa0074100:intron 45.0%
!!! TGCCTTTTGGAATGGAATCC+GGG + chr1_2:48290567-48290586 None:intergenic 45.0%
GAGGTTCACCTATCCATATG+AGG - chr1_2:48291001-48291020 Msa0074100:intron 45.0%
GGCGGACATTTATCCTCATA+TGG + chr1_2:48291017-48291036 None:intergenic 45.0%
!! AATGCCAAACTTGCTATCGG+CGG + chr1_2:48291035-48291054 None:intergenic 45.0%
! TTCAGGTTCGATATCAGAGC+AGG - chr1_2:48291209-48291228 Msa0074100:intron 45.0%
AACAACGACCACGATATCGA+GGG - chr1_2:48291245-48291264 Msa0074100:intron 45.0%
ACAAATTGCCCTCGATATCG+TGG + chr1_2:48291256-48291275 None:intergenic 45.0%
CTCACTTGCATTACCATTCG+AGG + chr1_2:48291287-48291306 None:intergenic 45.0%
! CTCGAATGGTAATGCAAGTG+AGG - chr1_2:48291285-48291304 Msa0074100:intron 45.0%
GCATTTGACACAATGGCGTT+TGG - chr1_2:48291330-48291349 Msa0074100:intron 45.0%
! ACAATGGCGTTTGGGATAAC+CGG - chr1_2:48291339-48291358 Msa0074100:intron 45.0%
TTCCTAACCTGGGATGAGTT+TGG - chr1_2:48291743-48291762 Msa0074100:five_prime_UTR 45.0%
TCCTAACCTGGGATGAGTTT+GGG - chr1_2:48291744-48291763 Msa0074100:five_prime_UTR 45.0%
!! AAAAAAAAAGATTAATAATA+TGG + chr1_2:48289753-48289772 None:intergenic 5.0%
ATCAAAAGAAGGGTGGCCAC+AGG + chr1_2:48280793-48280812 None:intergenic 50.0%
!! GATTGGTGACGTGGATGAAG+TGG + chr1_2:48280895-48280914 None:intergenic 50.0%
GGCTGCCATGGATGTTTAGT+TGG - chr1_2:48282290-48282309 Msa0074100:intron 50.0%
AGAACTTGGTCAGCGTTTGC+GGG - chr1_2:48282545-48282564 Msa0074100:intron 50.0%
!! GAGTTAAGGTTGGTGAGGGA+GGG - chr1_2:48282640-48282659 Msa0074100:intron 50.0%
TACCGCAGCAACAGTCTCAA+GGG - chr1_2:48282694-48282713 Msa0074100:intron 50.0%
CAACGCAGTGACAATATGGC+GGG + chr1_2:48282793-48282812 None:intergenic 50.0%
GCAACGCAGTGACAATATGG+CGG + chr1_2:48282794-48282813 None:intergenic 50.0%
! TGCTGTAAGCCCTTTAAGGG+TGG + chr1_2:48283486-48283505 None:intergenic 50.0%
AATATCCCCCTTTGAGCTGG+AGG - chr1_2:48283558-48283577 Msa0074100:three_prime_UTR 50.0%
ATAGGTGCAGAGATGCCCTT+TGG - chr1_2:48283953-48283972 Msa0074100:three_prime_UTR 50.0%
!!! GAAGTGGTTTTGACCGGAGA+GGG - chr1_2:48283998-48284017 Msa0074100:three_prime_UTR 50.0%
!!! AAGTGGTTTTGACCGGAGAG+GGG - chr1_2:48283999-48284018 Msa0074100:three_prime_UTR 50.0%
GGTCAGCATTCCAGTGACTA+GGG - chr1_2:48284020-48284039 Msa0074100:three_prime_UTR 50.0%
GCATTCCAGTGACTAGGGAT+TGG - chr1_2:48284025-48284044 Msa0074100:three_prime_UTR 50.0%
!! CTAGGGATTGGTTCATGGCA+AGG - chr1_2:48284037-48284056 Msa0074100:three_prime_UTR 50.0%
TGTGCGTGCTTTCCACTCAA+AGG + chr1_2:48284170-48284189 None:intergenic 50.0%
! TGGAAAGCACGCACAACCTA+AGG - chr1_2:48284175-48284194 Msa0074100:three_prime_UTR 50.0%
GGTGGTTGCAAGAAGTTAGG+TGG - chr1_2:48284269-48284288 Msa0074100:three_prime_UTR 50.0%
TAGGTGGCCATAAGAAGGCA+TGG - chr1_2:48284285-48284304 Msa0074100:three_prime_UTR 50.0%
GCATGGTCCCATAATCGGTA+GGG - chr1_2:48284302-48284321 Msa0074100:intron 50.0%
TGGCTTGAGCAAGCAAGGTA+AGG - chr1_2:48284330-48284349 Msa0074100:intron 50.0%
TTGAGCAAGCAAGGTAAGGC+CGG - chr1_2:48284334-48284353 Msa0074100:intron 50.0%
!! GACTGGCGTACTTAGCTTGT+TGG - chr1_2:48284618-48284637 Msa0074100:intron 50.0%
TTAACTGAGGTGGCAATGCC+TGG - chr1_2:48284880-48284899 Msa0074100:intron 50.0%
GTGGCAATGCCTGGTTTATC+AGG - chr1_2:48284889-48284908 Msa0074100:intron 50.0%
AGATTATGGGCCACCCAACA+CGG - chr1_2:48284929-48284948 Msa0074100:intron 50.0%
TTCCTTCAGTCTAGTGGGAG+TGG - chr1_2:48285512-48285531 Msa0074100:intron 50.0%
!! TGACAATGGTAGTGGCACTC+AGG - chr1_2:48285661-48285680 Msa0074100:intron 50.0%
GGCAAACGACAAACCTAACC+TGG - chr1_2:48285889-48285908 Msa0074100:intron 50.0%
AGGTTGAGCTATGCTGAAGG+AGG + chr1_2:48286085-48286104 None:intergenic 50.0%
CCAAGGTTGAGCTATGCTGA+AGG + chr1_2:48286088-48286107 None:intergenic 50.0%
CCTTCAGCATAGCTCAACCT+TGG - chr1_2:48286085-48286104 Msa0074100:intron 50.0%
CACGAATGAGGACATGCCAA+AGG + chr1_2:48286135-48286154 None:intergenic 50.0%
CTTTGGCATGTCCTCATTCG+TGG - chr1_2:48286133-48286152 Msa0074100:intron 50.0%
TAAGGAACCACCCACGAATG+AGG + chr1_2:48286147-48286166 None:intergenic 50.0%
GTACGTCGAGGAAAAGGCTA+AGG + chr1_2:48286165-48286184 None:intergenic 50.0%
CAAGGCAGGGACTGAAGATT+TGG + chr1_2:48286209-48286228 None:intergenic 50.0%
TTCAGTCCCTGCCTTGAACT+AGG - chr1_2:48286213-48286232 Msa0074100:intron 50.0%
GCAAAGCCTAGTTCAAGGCA+GGG + chr1_2:48286222-48286241 None:intergenic 50.0%
CTGCCTTGAACTAGGCTTTG+CGG - chr1_2:48286221-48286240 Msa0074100:intron 50.0%
ACACCGCAAAGCCTAGTTCA+AGG + chr1_2:48286227-48286246 None:intergenic 50.0%
ACTTCCACCTTCCTAGGCTT+AGG + chr1_2:48286887-48286906 None:intergenic 50.0%
GGTGTAGAAGAATGCCGTGT+TGG - chr1_2:48286961-48286980 Msa0074100:intron 50.0%
GTCAGGCAGATGCATCTACA+CGG + chr1_2:48287017-48287036 None:intergenic 50.0%
! TTCTCCTTTTGCAGAGCTCC+TGG - chr1_2:48287264-48287283 Msa0074100:intron 50.0%
TTCTACAGCTCGTTTGGTCC+AGG + chr1_2:48287285-48287304 None:intergenic 50.0%
GTCCTAAATCAGGCTCTCAG+TGG - chr1_2:48287312-48287331 Msa0074100:intron 50.0%
TCCCACTGAGAGCCTGATTT+AGG + chr1_2:48287317-48287336 None:intergenic 50.0%
! ACTTGAGCACAAGTGCTGTC+GGG + chr1_2:48287356-48287375 None:intergenic 50.0%
CAGCGACAGGAGGAAAATCA+AGG + chr1_2:48287476-48287495 None:intergenic 50.0%
AGAGTTTATGCAGCGACAGG+AGG + chr1_2:48287486-48287505 None:intergenic 50.0%
TTTCCTCCATCACTTGGGCA+GGG + chr1_2:48288094-48288113 None:intergenic 50.0%
ATTTCCTCCATCACTTGGGC+AGG + chr1_2:48288095-48288114 None:intergenic 50.0%
! GCCCAAGTGATGGAGGAAAT+AGG - chr1_2:48288095-48288114 Msa0074100:intron 50.0%
! CATGCACGTACCTCGTTTTG+TGG - chr1_2:48288273-48288292 Msa0074100:intron 50.0%
GCGGTTCCAGTCAAAATTGC+AGG - chr1_2:48288383-48288402 Msa0074100:intron 50.0%
AGAAGCTGGTCCTGCAATTC+AGG - chr1_2:48288691-48288710 Msa0074100:intron 50.0%
AGAGTTGCTTCCGACACATC+CGG + chr1_2:48288890-48288909 None:intergenic 50.0%
TTGGTTGTTGATGCCTCTGC+TGG + chr1_2:48289078-48289097 None:intergenic 50.0%
TGACAAGGGTTCTGCTACTC+GGG - chr1_2:48289218-48289237 Msa0074100:intron 50.0%
CATCATGCTCAGGTAGCAAC+TGG + chr1_2:48289293-48289312 None:intergenic 50.0%
GAAGATTCGGCATCATGCTC+AGG + chr1_2:48289303-48289322 None:intergenic 50.0%
ACTGTTGTTGCTCCACACTG+TGG - chr1_2:48289333-48289352 Msa0074100:intron 50.0%
CTGTTGTTGCTCCACACTGT+GGG - chr1_2:48289334-48289353 Msa0074100:intron 50.0%
! GTGGTCAAAGTGCCAGTTGA+AGG - chr1_2:48289366-48289385 Msa0074100:intron 50.0%
AGCAGCGCTGCAATTAATGC+TGG - chr1_2:48289459-48289478 Msa0074100:intron 50.0%
AGCGCTGCAATTAATGCTGG+AGG - chr1_2:48289462-48289481 Msa0074100:intron 50.0%
GCGCTGCAATTAATGCTGGA+GGG - chr1_2:48289463-48289482 Msa0074100:intron 50.0%
! GACAGCAACAATGGACTTGC+TGG - chr1_2:48289495-48289514 Msa0074100:intron 50.0%
!!! GGTTTTTTTTTGGGGGAGGG+GGG + chr1_2:48289829-48289848 None:intergenic 50.0%
!!! GGGTTTTTTTTTGGGGGAGG+GGG + chr1_2:48289830-48289849 None:intergenic 50.0%
!!! GGGGTTTTTTTTTGGGGGAG+GGG + chr1_2:48289831-48289850 None:intergenic 50.0%
TTGGGTCCATGATGCTCATG+CGG + chr1_2:48289862-48289881 None:intergenic 50.0%
! TACTGAAGTTGGTCTCTGGG+TGG + chr1_2:48289962-48289981 None:intergenic 50.0%
CTGCTATGCACAGGGAATCA+CGG - chr1_2:48290051-48290070 Msa0074100:three_prime_UTR 50.0%
GCAGTATTACCACCAGAAGG+TGG + chr1_2:48290150-48290169 None:intergenic 50.0%
!! GAAAACTGGCTTGATGGGCA+TGG + chr1_2:48290186-48290205 None:intergenic 50.0%
!! GCCAGGAAAACTGGCTTGAT+GGG + chr1_2:48290191-48290210 None:intergenic 50.0%
!! AGCCAGGAAAACTGGCTTGA+TGG + chr1_2:48290192-48290211 None:intergenic 50.0%
AGGTTCACAGCCAGGAAAAC+TGG + chr1_2:48290200-48290219 None:intergenic 50.0%
GATGATCTCAACCTCAGTCC+TGG + chr1_2:48290904-48290923 None:intergenic 50.0%
ATGTCCGCCGATAGCAAGTT+TGG - chr1_2:48291028-48291047 Msa0074100:intron 50.0%
CTGCACCGTCCACATAATGA+TGG + chr1_2:48291113-48291132 None:intergenic 50.0%
GAACAACGACCACGATATCG+AGG - chr1_2:48291244-48291263 Msa0074100:intron 50.0%
TTTGTGCGACAGTCCTCGAA+TGG - chr1_2:48291271-48291290 Msa0074100:intron 50.0%
TTGGGATAACCGGACGGAAA+AGG - chr1_2:48291349-48291368 Msa0074100:intron 50.0%
TGGGATAACCGGACGGAAAA+GGG - chr1_2:48291350-48291369 Msa0074100:intron 50.0%
TGTTCAAGACCTACCCGTTG+CGG - chr1_2:48291665-48291684 Msa0074100:five_prime_UTR 50.0%
TGCAGAACCTGAACTGGGTT+TGG + chr1_2:48291694-48291713 None:intergenic 50.0%
CCTAACCTGGGATGAGTTTG+GGG - chr1_2:48291745-48291764 Msa0074100:five_prime_UTR 50.0%
AAAAGAAGGGTGGCCACAGG+TGG + chr1_2:48280790-48280809 None:intergenic 55.0%
CTCTCTCCACGTGGCACATT+TGG - chr1_2:48280855-48280874 Msa0074100:three_prime_UTR 55.0%
! TGGTGACGTGGATGAAGTGG+AGG + chr1_2:48280892-48280911 None:intergenic 55.0%
!! TTGGTGAGGGATTGGTGACG+TGG + chr1_2:48280904-48280923 None:intergenic 55.0%
CAACAAGGGGCCGTTTGGAT+TGG + chr1_2:48281651-48281670 None:intergenic 55.0%
CAATCCAAACGGCCCCTTGT+TGG - chr1_2:48281649-48281668 Msa0074100:intron 55.0%
GTTACCAACAAGGGGCCGTT+TGG + chr1_2:48281656-48281675 None:intergenic 55.0%
TTGGTCAGCGTTTGCGGGAT+GGG - chr1_2:48282550-48282569 Msa0074100:intron 55.0%
!! GGAGTTAAGGTTGGTGAGGG+AGG - chr1_2:48282639-48282658 Msa0074100:intron 55.0%
!! AAGGTTGGTGAGGGAGGGAA+TGG - chr1_2:48282645-48282664 Msa0074100:intron 55.0%
GTACCGCAGCAACAGTCTCA+AGG - chr1_2:48282693-48282712 Msa0074100:intron 55.0%
ACCGCAGCAACAGTCTCAAG+GGG - chr1_2:48282695-48282714 Msa0074100:intron 55.0%
CATTCGTGCTCAGGAGCAGT+GGG + chr1_2:48283676-48283695 None:intergenic 55.0%
ACATTCGTGCTCAGGAGCAG+TGG + chr1_2:48283677-48283696 None:intergenic 55.0%
TGAAGCCATGTTTGAGGGCG+AGG - chr1_2:48283976-48283995 Msa0074100:three_prime_UTR 55.0%
CACTTCCTCGCCCTCAAACA+TGG + chr1_2:48283984-48284003 None:intergenic 55.0%
CATGTTTGAGGGCGAGGAAG+TGG - chr1_2:48283982-48284001 Msa0074100:three_prime_UTR 55.0%
!!! GGCGAGGAAGTGGTTTTGAC+CGG - chr1_2:48283992-48284011 Msa0074100:three_prime_UTR 55.0%
!!! GGAAGTGGTTTTGACCGGAG+AGG - chr1_2:48283997-48284016 Msa0074100:three_prime_UTR 55.0%
GGGTCAGCATTCCAGTGACT+AGG - chr1_2:48284019-48284038 Msa0074100:three_prime_UTR 55.0%
CGTGGTTAGGTGAATGACCC+AGG - chr1_2:48284134-48284153 Msa0074100:three_prime_UTR 55.0%
GGCATGGTCCCATAATCGGT+AGG - chr1_2:48284301-48284320 Msa0074100:intron 55.0%
ACCTGTGGCAGCATGTTTGG+AGG - chr1_2:48285178-48285197 Msa0074100:intron 55.0%
TCCTCCAAACATGCTGCCAC+AGG + chr1_2:48285182-48285201 None:intergenic 55.0%
TGCCACTCCCACTAGACTGA+AGG + chr1_2:48285517-48285536 None:intergenic 55.0%
AGTGGGAGTGGCAGTGAAAG+TGG - chr1_2:48285524-48285543 Msa0074100:intron 55.0%
GACTGGAAACACAAGGCCCA+AGG + chr1_2:48286105-48286124 None:intergenic 55.0%
CGCAAAGCCTAGTTCAAGGC+AGG + chr1_2:48286223-48286242 None:intergenic 55.0%
AGAGCCTAAGCCTAGGAAGG+TGG - chr1_2:48286880-48286899 Msa0074100:intron 55.0%
TGGTCCAGGAGCTCTGCAAA+AGG + chr1_2:48287271-48287290 None:intergenic 55.0%
TTCCTCCATCACTTGGGCAG+GGG + chr1_2:48288093-48288112 None:intergenic 55.0%
! ATTGCTGGCCTCCAGCTCTT+GGG + chr1_2:48288200-48288219 None:intergenic 55.0%
! AATTGCTGGCCTCCAGCTCT+TGG + chr1_2:48288201-48288220 None:intergenic 55.0%
AAGTCTCCCACCGGATGTGT+CGG - chr1_2:48288877-48288896 Msa0074100:intron 55.0%
TTGCTTCCGACACATCCGGT+GGG + chr1_2:48288886-48288905 None:intergenic 55.0%
! TGGGCTGGAAAGCAGACGTT+TGG + chr1_2:48289110-48289129 None:intergenic 55.0%
CTTGCTGGGAATAGTGGCAG+TGG - chr1_2:48289510-48289529 Msa0074100:intron 55.0%
! AGTGGCAGTGGTGATGCTAG+TGG - chr1_2:48289522-48289541 Msa0074100:intron 55.0%
GGAGGGGGGCTACACATTTA+AGG + chr1_2:48289815-48289834 None:intergenic 55.0%
TCCATGATGCTCATGCGGTG+GGG + chr1_2:48289857-48289876 None:intergenic 55.0%
GTCCATGATGCTCATGCGGT+GGG + chr1_2:48289858-48289877 None:intergenic 55.0%
! TGAAGTTGGTCTCTGGGTGG+AGG + chr1_2:48289959-48289978 None:intergenic 55.0%
CGTGATTCCCTGTGCATAGC+AGG + chr1_2:48290053-48290072 None:intergenic 55.0%
! TGGCTTGATGGGCATGGAGA+GGG + chr1_2:48290180-48290199 None:intergenic 55.0%
! GCCCATCAAGCCAGTTTTCC+TGG - chr1_2:48290187-48290206 Msa0074100:exon 55.0%
CCAAGAGAAGGTTCACAGCC+AGG + chr1_2:48290208-48290227 None:intergenic 55.0%
CCTGGCTGTGAACCTTCTCT+TGG - chr1_2:48290205-48290224 Msa0074100:CDS 55.0%
TCGTGAAGCCCAGTAGAGTG+AGG - chr1_2:48290395-48290414 Msa0074100:intron 55.0%
! TGGCGTTTGGGATAACCGGA+CGG - chr1_2:48291343-48291362 Msa0074100:intron 55.0%
! CTTCTGGACCCTTTTCCGTC+CGG + chr1_2:48291361-48291380 None:intergenic 55.0%
! ACTGGGTTTGGTCACCGCAA+CGG + chr1_2:48291682-48291701 None:intergenic 55.0%
CCCCAAACTCATCCCAGGTT+AGG + chr1_2:48291748-48291767 None:intergenic 55.0%
GACAACCCCAAACTCATCCC+AGG + chr1_2:48291753-48291772 None:intergenic 55.0%
CTTGGTCAGCGTTTGCGGGA+TGG - chr1_2:48282549-48282568 Msa0074100:intron 60.0%
GCCCCTTGAGACTGTTGCTG+CGG + chr1_2:48282699-48282718 None:intergenic 60.0%
GCTTACAGCATGAGGCCCGA+AGG - chr1_2:48283496-48283515 Msa0074100:three_prime_UTR 60.0%
CCACTCCTCCAGCTCAAAGG+GGG + chr1_2:48283566-48283585 None:intergenic 60.0%
GCCACTCCTCCAGCTCAAAG+GGG + chr1_2:48283567-48283586 None:intergenic 60.0%
CGCCACTCCTCCAGCTCAAA+GGG + chr1_2:48283568-48283587 None:intergenic 60.0%
CCTTTGAGCTGGAGGAGTGG+CGG - chr1_2:48283566-48283585 Msa0074100:three_prime_UTR 60.0%
CTGGAATGCTGACCCCTCTC+CGG + chr1_2:48284014-48284033 None:intergenic 60.0%
! TGGGCACGCTCTAGCCTTCT+AGG - chr1_2:48284439-48284458 Msa0074100:intron 60.0%
GGCATGTCCTCATTCGTGGG+TGG - chr1_2:48286137-48286156 Msa0074100:intron 60.0%
TGCAACCCCTGCCCAAGTGA+TGG - chr1_2:48288085-48288104 Msa0074100:intron 60.0%
AACCCCTGCCCAAGTGATGG+AGG - chr1_2:48288088-48288107 Msa0074100:intron 60.0%
GTATCCCCTTCCCCAAGAGC+TGG - chr1_2:48288186-48288205 Msa0074100:intron 60.0%
! TTGCTGGCCTCCAGCTCTTG+GGG + chr1_2:48288199-48288218 None:intergenic 60.0%
GTTGCTTCCGACACATCCGG+TGG + chr1_2:48288887-48288906 None:intergenic 60.0%
ATGCTCATGCGGTGGGGGTT+GGG + chr1_2:48289851-48289870 None:intergenic 60.0%
CCATGATGCTCATGCGGTGG+GGG + chr1_2:48289856-48289875 None:intergenic 60.0%
GGTCCATGATGCTCATGCGG+TGG + chr1_2:48289859-48289878 None:intergenic 60.0%
! CTGGCTTGATGGGCATGGAG+AGG + chr1_2:48290181-48290200 None:intergenic 60.0%
GTTTGGTCACCGCAACGGGT+AGG + chr1_2:48291677-48291696 None:intergenic 60.0%
! CTGGGTTTGGTCACCGCAAC+GGG + chr1_2:48291681-48291700 None:intergenic 60.0%
GCGGTGACCAAACCCAGTTC+AGG - chr1_2:48291684-48291703 Msa0074100:five_prime_UTR 60.0%
CCCCCTTTGAGCTGGAGGAG+TGG - chr1_2:48283563-48283582 Msa0074100:three_prime_UTR 65.0%
CCGCCACTCCTCCAGCTCAA+AGG + chr1_2:48283569-48283588 None:intergenic 65.0%
TCCCCTTCCCCAAGAGCTGG+AGG - chr1_2:48288189-48288208 Msa0074100:intron 65.0%
GCCTCCAGCTCTTGGGGAAG+GGG + chr1_2:48288193-48288212 None:intergenic 65.0%
GGCCTCCAGCTCTTGGGGAA+GGG + chr1_2:48288194-48288213 None:intergenic 65.0%
TGGCCTCCAGCTCTTGGGGA+AGG + chr1_2:48288195-48288214 None:intergenic 65.0%
TGCTCATGCGGTGGGGGTTG+GGG + chr1_2:48289850-48289869 None:intergenic 65.0%
GATGCTCATGCGGTGGGGGT+TGG + chr1_2:48289852-48289871 None:intergenic 65.0%
CCCCCACCGCATGAGCATCA+TGG - chr1_2:48289853-48289872 Msa0074100:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 48280753 48291948 48280753 ID=Msa0074100;Name=Msa0074100
chr1_2 mRNA 48280753 48291948 48280753 ID=Msa0074100-mRNA-1;Parent=Msa0074100;Name=Msa0074100-mRNA-1;_AED=0.17;_eAED=0.17;_QI=362|0.9|0.90|1|0.9|0.81|11|2637|70
chr1_2 exon 48280753 48281077 48280753 ID=Msa0074100-mRNA-1:exon:14724;Parent=Msa0074100-mRNA-1
chr1_2 exon 48281314 48281487 48281314 ID=Msa0074100-mRNA-1:exon:14723;Parent=Msa0074100-mRNA-1
chr1_2 exon 48283045 48283849 48283045 ID=Msa0074100-mRNA-1:exon:14722;Parent=Msa0074100-mRNA-1
chr1_2 exon 48283942 48284308 48283942 ID=Msa0074100-mRNA-1:exon:14721;Parent=Msa0074100-mRNA-1
chr1_2 exon 48285243 48285423 48285243 ID=Msa0074100-mRNA-1:exon:14720;Parent=Msa0074100-mRNA-1
chr1_2 exon 48287019 48287180 48287019 ID=Msa0074100-mRNA-1:exon:14719;Parent=Msa0074100-mRNA-1
chr1_2 exon 48287489 48287622 48287489 ID=Msa0074100-mRNA-1:exon:14718;Parent=Msa0074100-mRNA-1
chr1_2 exon 48287731 48287892 48287731 ID=Msa0074100-mRNA-1:exon:14717;Parent=Msa0074100-mRNA-1
chr1_2 exon 48289867 48290301 48289867 ID=Msa0074100-mRNA-1:exon:14716;Parent=Msa0074100-mRNA-1
chr1_2 exon 48291358 48291432 48291358 ID=Msa0074100-mRNA-1:exon:14715;Parent=Msa0074100-mRNA-1
chr1_2 exon 48291557 48291948 48291557 ID=Msa0074100-mRNA-1:exon:14714;Parent=Msa0074100-mRNA-1
chr1_2 five_prime_UTR 48291587 48291948 48291587 ID=Msa0074100-mRNA-1:five_prime_utr;Parent=Msa0074100-mRNA-1
chr1_2 CDS 48291557 48291586 48291557 ID=Msa0074100-mRNA-1:cds;Parent=Msa0074100-mRNA-1
chr1_2 CDS 48291358 48291432 48291358 ID=Msa0074100-mRNA-1:cds;Parent=Msa0074100-mRNA-1
chr1_2 CDS 48290194 48290301 48290194 ID=Msa0074100-mRNA-1:cds;Parent=Msa0074100-mRNA-1
chr1_2 three_prime_UTR 48289867 48290193 48289867 ID=Msa0074100-mRNA-1:three_prime_utr;Parent=Msa0074100-mRNA-1
chr1_2 three_prime_UTR 48287731 48287892 48287731 ID=Msa0074100-mRNA-1:three_prime_utr;Parent=Msa0074100-mRNA-1
chr1_2 three_prime_UTR 48287489 48287622 48287489 ID=Msa0074100-mRNA-1:three_prime_utr;Parent=Msa0074100-mRNA-1
chr1_2 three_prime_UTR 48287019 48287180 48287019 ID=Msa0074100-mRNA-1:three_prime_utr;Parent=Msa0074100-mRNA-1
chr1_2 three_prime_UTR 48285243 48285423 48285243 ID=Msa0074100-mRNA-1:three_prime_utr;Parent=Msa0074100-mRNA-1
chr1_2 three_prime_UTR 48283942 48284308 48283942 ID=Msa0074100-mRNA-1:three_prime_utr;Parent=Msa0074100-mRNA-1
chr1_2 three_prime_UTR 48283045 48283849 48283045 ID=Msa0074100-mRNA-1:three_prime_utr;Parent=Msa0074100-mRNA-1
chr1_2 three_prime_UTR 48281314 48281487 48281314 ID=Msa0074100-mRNA-1:three_prime_utr;Parent=Msa0074100-mRNA-1
chr1_2 three_prime_UTR 48280753 48281077 48280753 ID=Msa0074100-mRNA-1:three_prime_utr;Parent=Msa0074100-mRNA-1
Gene Sequence

>Msa0074100

ATGGCGATTAGTGATACTTATTATGAGCTGTGTGAAGGATTTAGCATAAAGAAAGCGATGCAACTATTCTGGTTTTGGATGTTTATGTTCAAGGAAAGATCTATCTGTCTTGCAGTTGTATTTGGGTTGGGGTTTGTGAAGATTGTAGCATTTGCTGTTTTGCTTTGGATGAGGACGGGTTATAATTATCGCGAGCTTGGGCATTTTGAATGA
Protein sequence

>Msa0074100

MAISDTYYELCEGFSIKKAMQLFWFWMFMFKERSICLAVVFGLGFVKIVAFAVLLWMRTGYNYRELGHFE*