Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463210 | XP_003600886.1 | 96.591 | 264 | 1 | 1 | 1 | 264 | 1 | 256 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463210 | sp|Q9SRM5|CPR49_ARATH | 68.561 | 264 | 75 | 1 | 1 | 264 | 1 | 256 | 3.43e-138 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463210 | G7JB85 | 96.591 | 264 | 1 | 1 | 1 | 264 | 1 | 256 | 0.0 | 525 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028420 | Msa0463210 | 0.800528 | 1.381313e-48 | -8.615850e-47 |
| Msa0122620 | Msa0463210 | 0.808615 | 2.838390e-50 | -8.615850e-47 |
| Msa0369170 | Msa0463210 | 0.868440 | 6.520059e-66 | -8.615850e-47 |
| Msa0416590 | Msa0463210 | 0.845509 | 3.885253e-59 | -8.615850e-47 |
| Msa0463210 | Msa0722810 | 0.805421 | 1.345988e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463210 | MtrunA17_Chr3g0113401 | 96.591 | 264 | 1 | 1 | 1 | 264 | 1 | 256 | 0.0 | 525 |
| Msa0463210 | MtrunA17_Chr4g0006731 | 64.394 | 264 | 86 | 1 | 1 | 264 | 1 | 256 | 4.87e-125 | 356 |
| Msa0463210 | MtrunA17_Chr7g0242451 | 60.227 | 264 | 94 | 3 | 1 | 264 | 1 | 253 | 1.55e-115 | 332 |
| Msa0463210 | MtrunA17_Chr7g0242401 | 59.770 | 261 | 95 | 3 | 3 | 263 | 30 | 280 | 4.91e-112 | 323 |
| Msa0463210 | MtrunA17_Chr7g0242431 | 58.238 | 261 | 99 | 3 | 3 | 263 | 29 | 279 | 6.81e-109 | 316 |
| Msa0463210 | MtrunA17_Chr7g0242461 | 56.061 | 264 | 106 | 2 | 1 | 264 | 1 | 254 | 1.11e-107 | 311 |
| Msa0463210 | MtrunA17_Chr7g0242411 | 56.977 | 258 | 96 | 4 | 6 | 263 | 2 | 244 | 5.94e-102 | 297 |
| Msa0463210 | MtrunA17_Chr7g0242391 | 51.331 | 263 | 115 | 4 | 6 | 264 | 2 | 255 | 8.57e-93 | 274 |
| Msa0463210 | MtrunA17_Chr2g0283411 | 35.135 | 222 | 124 | 6 | 6 | 217 | 4 | 215 | 6.47e-40 | 138 |
| Msa0463210 | MtrunA17_Chr2g0283421 | 35.160 | 219 | 128 | 3 | 5 | 217 | 4 | 214 | 1.87e-39 | 137 |
| Msa0463210 | MtrunA17_Chr7g0242441 | 34.902 | 255 | 94 | 6 | 6 | 260 | 3 | 185 | 1.91e-37 | 130 |
| Msa0463210 | MtrunA17_Chr4g0059001 | 33.333 | 225 | 128 | 5 | 24 | 240 | 47 | 257 | 1.99e-31 | 117 |
| Msa0463210 | MtrunA17_Chr2g0283391 | 30.601 | 183 | 100 | 5 | 41 | 217 | 1 | 162 | 1.80e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463210 | AT3G11210.1 | 68.561 | 264 | 75 | 1 | 1 | 264 | 1 | 256 | 3.48e-139 | 392 |
| Msa0463210 | AT2G38180.1 | 59.664 | 238 | 82 | 3 | 1 | 236 | 1 | 226 | 2.31e-99 | 293 |
| Msa0463210 | AT5G62930.1 | 36.667 | 240 | 135 | 4 | 6 | 240 | 2 | 229 | 5.94e-52 | 170 |
| Msa0463210 | AT5G62930.2 | 36.667 | 240 | 135 | 4 | 6 | 240 | 28 | 255 | 1.50e-51 | 169 |
| Msa0463210 | AT5G45920.1 | 40.455 | 220 | 112 | 6 | 6 | 217 | 3 | 211 | 2.55e-47 | 158 |
| Msa0463210 | AT5G45920.4 | 40.455 | 220 | 112 | 6 | 6 | 217 | 3 | 211 | 2.55e-47 | 158 |
| Msa0463210 | AT5G45920.2 | 39.286 | 196 | 100 | 6 | 6 | 193 | 3 | 187 | 1.31e-38 | 134 |
| Msa0463210 | AT5G45920.3 | 39.286 | 196 | 100 | 6 | 6 | 193 | 3 | 187 | 1.31e-38 | 134 |
| Msa0463210 | AT5G62930.3 | 30.818 | 159 | 97 | 2 | 65 | 218 | 3 | 153 | 4.90e-25 | 98.6 |
Find 77 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTGTCATAGTTTATTT+TGG | 0.117407 | 3_3:+62573739 | Msa0463210:CDS |
| TCAAATGTCAACAAACATTT+TGG | 0.193201 | 3_3:+62571391 | Msa0463210:five_prime_UTR |
| TCATCATGTATTTGTTATTC+AGG | 0.209587 | 3_3:+62575781 | Msa0463210:three_prime_UTR |
| CTTTCTGTTGTGATGAGTTA+TGG | 0.232371 | 3_3:-62571636 | None:intergenic |
| AAAGATTCTCGTTCATATTC+AGG | 0.237645 | 3_3:+62573840 | Msa0463210:CDS |
| TGCTCCCCTCAGCTGCTAAA+TGG | 0.269995 | 3_3:-62575387 | None:intergenic |
| AACATTATGGTTGGTTTGTT+AGG | 0.273179 | 3_3:-62571454 | None:intergenic |
| CGGTTTGGCGCTGCCTGCTT+TGG | 0.298101 | 3_3:+62571544 | Msa0463210:five_prime_UTR |
| TTTCTGTTGTGATGAGTTAT+GGG | 0.301348 | 3_3:-62571635 | None:intergenic |
| ACCAACCATAATGTTTGATT+TGG | 0.301962 | 3_3:+62571462 | Msa0463210:five_prime_UTR |
| CAGGTGCAACCATGTTTCTT+AGG | 0.317259 | 3_3:-62571667 | None:intergenic |
| AAACACCAAATCAAACATTA+TGG | 0.319034 | 3_3:-62571467 | None:intergenic |
| CAGAGAGGTTCAGTGGGATT+AGG | 0.324071 | 3_3:+62575570 | Msa0463210:CDS |
| ATTCATCTTAGTTATTATAA+AGG | 0.332554 | 3_3:-62575849 | None:intergenic |
| GTGGAAACTGCTAAAATATA+AGG | 0.360830 | 3_3:-62575608 | None:intergenic |
| AGAGATATTGAAAGTACTTA+AGG | 0.366404 | 3_3:+62575423 | Msa0463210:CDS |
| GGAAAACTTGATGGAGGACT+TGG | 0.366424 | 3_3:-62572920 | None:intergenic |
| ATACCTTTGGGAAAACTTGA+TGG | 0.386117 | 3_3:-62572929 | None:intergenic |
| CAGTTACAGCCATAGTGGTT+GGG | 0.391779 | 3_3:+62571733 | Msa0463210:CDS |
| AGACCTCAATTTGTTCTCTT+CGG | 0.393518 | 3_3:+62571692 | Msa0463210:CDS |
| TCCATGGGTCCTCACTCATC+TGG | 0.396852 | 3_3:+62573772 | Msa0463210:CDS |
| CGTTGACCCTCCACAAGCTT+AGG | 0.411476 | 3_3:+62571518 | Msa0463210:five_prime_UTR |
| CACTACAAAGTATAGATGAT+TGG | 0.413474 | 3_3:+62574798 | Msa0463210:CDS |
| CATCATGTATTTGTTATTCA+GGG | 0.429663 | 3_3:+62575782 | Msa0463210:three_prime_UTR |
| GGTCCTCACTCATCTGGTCT+AGG | 0.440601 | 3_3:+62573778 | Msa0463210:CDS |
| GTTCAGTGGGATTAGGATGT+TGG | 0.444644 | 3_3:+62575577 | Msa0463210:exon |
| AGAACAAATTGAGGTCTTGC+AGG | 0.448548 | 3_3:-62571686 | None:intergenic |
| GAAAGGAACCCCAACCACTA+TGG | 0.455649 | 3_3:-62571742 | None:intergenic |
| TACAAGCGTCAGAATAGCTT+CGG | 0.460418 | 3_3:-62574727 | None:intergenic |
| TTCAGTGGGATTAGGATGTT+GGG | 0.461381 | 3_3:+62575578 | Msa0463210:exon |
| CACAAGCTTAGGAAGCGGTT+TGG | 0.465041 | 3_3:+62571529 | Msa0463210:five_prime_UTR |
| ATTGGAAGCCATGCCTCCAC+TGG | 0.465238 | 3_3:+62575452 | Msa0463210:CDS |
| ACTACAAAGTATAGATGATT+GGG | 0.472047 | 3_3:+62574799 | Msa0463210:CDS |
| AGAATAGATGTCAGAAAGAA+AGG | 0.473416 | 3_3:-62571759 | None:intergenic |
| ACCAAATCAAACATTATGGT+TGG | 0.478218 | 3_3:-62571463 | None:intergenic |
| TATGATCTTGTTGCTGCTGA+TGG | 0.480251 | 3_3:+62575511 | Msa0463210:CDS |
| AGTTACAGCCATAGTGGTTG+GGG | 0.481840 | 3_3:+62571734 | Msa0463210:CDS |
| AAGAAGGAAAAGACCAAAGC+AGG | 0.484171 | 3_3:-62571557 | None:intergenic |
| TTCTGACATCTATTCTCGTA+AGG | 0.485495 | 3_3:+62571766 | Msa0463210:CDS |
| AAGTACTTAAGGAGGCTGAT+TGG | 0.489555 | 3_3:+62575434 | Msa0463210:CDS |
| CGTAAGACAGAGGCAGAAGA+AGG | 0.512746 | 3_3:-62571573 | None:intergenic |
| CCCTCCACAAGCTTAGGAAG+CGG | 0.524309 | 3_3:+62571524 | Msa0463210:five_prime_UTR |
| ATAAAGCTATGCAAGGAACT+TGG | 0.525996 | 3_3:+62574749 | Msa0463210:CDS |
| CAGCTCAGTTACAGCCATAG+TGG | 0.530252 | 3_3:+62571728 | Msa0463210:CDS |
| CTCTCTGTGAAAAGTCCACT+CGG | 0.533550 | 3_3:-62575554 | None:intergenic |
| TCAGTTACAGCCATAGTGGT+TGG | 0.535752 | 3_3:+62571732 | Msa0463210:CDS |
| TTTGCGATATATTCTTCAAG+TGG | 0.536290 | 3_3:-62573811 | None:intergenic |
| ACCAGATGAGTGAGGACCCA+TGG | 0.547376 | 3_3:-62573773 | None:intergenic |
| ATGATCTTGTTGCTGCTGAT+GGG | 0.556497 | 3_3:+62575512 | Msa0463210:CDS |
| TTTGGAGGCAATGATTCCAT+GGG | 0.556589 | 3_3:+62573757 | Msa0463210:CDS |
| GATCCGAAGAGAACAAATTG+AGG | 0.565485 | 3_3:-62571695 | None:intergenic |
| AAATAAACTATGACAAGAGA+AGG | 0.569239 | 3_3:-62573736 | None:intergenic |
| CTGTGAAAAGTCCACTCGGA+AGG | 0.571490 | 3_3:-62575550 | None:intergenic |
| TATTCTTCAAGTGGCACATG+AGG | 0.571651 | 3_3:-62573802 | None:intergenic |
| ATAGACTTCCAGTGGAGGCA+TGG | 0.576601 | 3_3:-62575460 | None:intergenic |
| GGTATCCATTTAGCAGCTGA+GGG | 0.579189 | 3_3:+62575382 | Msa0463210:CDS |
| TGGTATCCATTTAGCAGCTG+AGG | 0.586119 | 3_3:+62575381 | Msa0463210:CDS |
| ACCGCTTCCTAAGCTTGTGG+AGG | 0.589333 | 3_3:-62571525 | None:intergenic |
| AGCTGAGGGGAGCAAAATTG+TGG | 0.595319 | 3_3:+62575396 | Msa0463210:CDS |
| CGCTTGTATAAAGCTATGCA+AGG | 0.603226 | 3_3:+62574742 | Msa0463210:CDS |
| ATATTGTTACGAGGATACTA+CGG | 0.604736 | 3_3:+62572876 | Msa0463210:CDS |
| GATATTGAAAGTACTTAAGG+AGG | 0.616083 | 3_3:+62575426 | Msa0463210:CDS |
| CCGCTTCCTAAGCTTGTGGA+GGG | 0.617976 | 3_3:-62571524 | None:intergenic |
| TGTTACGAGGATACTACGGA+TGG | 0.628648 | 3_3:+62572880 | Msa0463210:CDS |
| CAAACCGCTTCCTAAGCTTG+TGG | 0.636079 | 3_3:-62571528 | None:intergenic |
| GTACATCATATAACTTACAC+TGG | 0.636627 | 3_3:-62575815 | None:intergenic |
| CAGTGTGCATAGACTTCCAG+TGG | 0.638815 | 3_3:-62575468 | None:intergenic |
| ATTCTTCAAGTGGCACATGA+GGG | 0.639837 | 3_3:-62573801 | None:intergenic |
| GAGAACACACCTAAGAAACA+TGG | 0.652028 | 3_3:+62571658 | Msa0463210:exon |
| CCTTTGGGAAAACTTGATGG+AGG | 0.663764 | 3_3:-62572926 | None:intergenic |
| GCTGTAACTGAGCTGAACGA+TGG | 0.666914 | 3_3:-62571720 | None:intergenic |
| AAGAGGCATACGTAAGACAG+AGG | 0.667582 | 3_3:-62571583 | None:intergenic |
| TAGGCAGATATATTGTTACG+AGG | 0.680324 | 3_3:+62572867 | Msa0463210:intron |
| TGTGCATAGACTTCCAGTGG+AGG | 0.686536 | 3_3:-62575465 | None:intergenic |
| GAACATTGAATCCTTCCGAG+TGG | 0.687868 | 3_3:+62575539 | Msa0463210:CDS |
| GGGCCTAGACCAGATGAGTG+AGG | 0.694487 | 3_3:-62573781 | None:intergenic |
| GTATCCATTTAGCAGCTGAG+GGG | 0.731566 | 3_3:+62575383 | Msa0463210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGTATATTTCAAAA+AGG | - | chr3_3:62571924-62571943 | None:intergenic | 10.0% |
| !!! | TTTGAAATATACAATTATTT+TGG | + | chr3_3:62571925-62571944 | Msa0463210:intron | 10.0% |
| !!! | TTGAAATATACAATTATTTT+GGG | + | chr3_3:62571926-62571945 | Msa0463210:intron | 10.0% |
| !!! | AATATAATTTTGAAAACTTT+TGG | + | chr3_3:62571999-62572018 | Msa0463210:intron | 10.0% |
| !!! | ATATAATTTTGAAAACTTTT+GGG | + | chr3_3:62572000-62572019 | Msa0463210:intron | 10.0% |
| !!! | TATTTTAAAAAACAAAAAGA+AGG | + | chr3_3:62572342-62572361 | Msa0463210:intron | 10.0% |
| !!! | TAAGAGTATTAAATTATTAA+TGG | - | chr3_3:62572702-62572721 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTAAATATGCAT+AGG | + | chr3_3:62573239-62573258 | Msa0463210:intron | 10.0% |
| !!! | AAAAATATTGATTTGTTATA+TGG | + | chr3_3:62575650-62575669 | Msa0463210:three_prime_UTR | 10.0% |
| !!! | AAAATACTAGATTAATGTTT+TGG | + | chr3_3:62571869-62571888 | Msa0463210:intron | 15.0% |
| !!! | AAATACTAGATTAATGTTTT+GGG | + | chr3_3:62571870-62571889 | Msa0463210:intron | 15.0% |
| !!! | TATAATTTTGAAAACTTTTG+GGG | + | chr3_3:62572001-62572020 | Msa0463210:intron | 15.0% |
| !!! | AAGATTTAAAAAAAAGTACA+AGG | - | chr3_3:62572180-62572199 | None:intergenic | 15.0% |
| !!! | AAAAACTTGTTCTTTTTAAA+CGG | - | chr3_3:62572553-62572572 | None:intergenic | 15.0% |
| !! | ATAATTTAATACTCTTACAT+TGG | + | chr3_3:62572705-62572724 | Msa0463210:intron | 15.0% |
| !! | AAAATAAAAATCATATACGA+TGG | - | chr3_3:62573229-62573248 | None:intergenic | 15.0% |
| !! | TATATTCTTCATCATTATTA+AGG | - | chr3_3:62574389-62574408 | None:intergenic | 15.0% |
| !! | AATAAAATTGATTAAGAAAG+AGG | - | chr3_3:62574854-62574873 | None:intergenic | 15.0% |
| !! | TTTCTTGTGAAATATATTAA+AGG | + | chr3_3:62575243-62575262 | Msa0463210:intron | 15.0% |
| !!! | ATAACTTGTAAAAAAGAATA+TGG | + | chr3_3:62575295-62575314 | Msa0463210:intron | 15.0% |
| !!! | TAACTTGTAAAAAAGAATAT+GGG | + | chr3_3:62575296-62575315 | Msa0463210:intron | 15.0% |
| !! | TTTAAAGAAAAACTTAAACA+AGG | - | chr3_3:62575633-62575652 | None:intergenic | 15.0% |
| !! | ATTCATCTTAGTTATTATAA+AGG | - | chr3_3:62575852-62575871 | None:intergenic | 15.0% |
| !! | TACTATAAGAAAATCAATCA+TGG | - | chr3_3:62572249-62572268 | None:intergenic | 20.0% |
| !!! | TCTTATAGTATTTCTGTTAT+TGG | + | chr3_3:62572259-62572278 | Msa0463210:intron | 20.0% |
| !! | TTATATTTAGCAATTTGAGA+AGG | - | chr3_3:62572380-62572399 | None:intergenic | 20.0% |
| !! | TTCTCAAATTGCTAAATATA+AGG | + | chr3_3:62572379-62572398 | Msa0463210:intron | 20.0% |
| !! | ACAAAAAAAAAATTCACAGT+TGG | - | chr3_3:62572474-62572493 | None:intergenic | 20.0% |
| !!! | GTGAATTTTTTTTTTGTTTG+TGG | + | chr3_3:62572477-62572496 | Msa0463210:intron | 20.0% |
| !!! | GATGTAAAATTACTCATTTT+AGG | + | chr3_3:62572848-62572867 | Msa0463210:intron | 20.0% |
| !!! | TTTCTAAAGACACAATATTA+AGG | + | chr3_3:62573082-62573101 | Msa0463210:intron | 20.0% |
| !!! | GAAAGAGAAAAATATGTTTT+AGG | - | chr3_3:62574590-62574609 | None:intergenic | 20.0% |
| !! | TCAAATGTCAACAAACATTT+TGG | + | chr3_3:62571391-62571410 | Msa0463210:five_prime_UTR | 25.0% |
| ! | AAACACCAAATCAAACATTA+TGG | - | chr3_3:62571470-62571489 | None:intergenic | 25.0% |
| ! | TTGATATTCTAGTGTTTAGA+CGG | + | chr3_3:62572285-62572304 | Msa0463210:intron | 25.0% |
| ! | CAAATTGCTAAATATAAGGT+TGG | + | chr3_3:62572383-62572402 | Msa0463210:intron | 25.0% |
| !! | TATTAATGGAGTATTTGTAC+AGG | - | chr3_3:62572688-62572707 | None:intergenic | 25.0% |
| ! | TTAATACTCTTACATTGGTA+TGG | + | chr3_3:62572710-62572729 | Msa0463210:intron | 25.0% |
| ! | AAGGAAAAAAAATCATGATC+AGG | - | chr3_3:62572769-62572788 | None:intergenic | 25.0% |
| ! | CGTCATCAAAGTTAATATTA+TGG | + | chr3_3:62572799-62572818 | Msa0463210:intron | 25.0% |
| ! | CATCAAAGTTAATATTATGG+AGG | + | chr3_3:62572802-62572821 | Msa0463210:intron | 25.0% |
| ! | AAATTAGGTACAATACCTTT+GGG | - | chr3_3:62572944-62572963 | None:intergenic | 25.0% |
| ! | CTTGTATTCAACATGATTTA+TGG | + | chr3_3:62573015-62573034 | Msa0463210:intron | 25.0% |
| !! | TTGTGTCTTTAGAAATTAAG+CGG | - | chr3_3:62573077-62573096 | None:intergenic | 25.0% |
| !!! | CAGAAACATTTCATTTTTCA+TGG | - | chr3_3:62573322-62573341 | None:intergenic | 25.0% |
| ! | GAGATAGTAAGTAAAACATA+TGG | - | chr3_3:62573357-62573376 | None:intergenic | 25.0% |
| !! | TGTTTTACTTACTATCTCTT+AGG | + | chr3_3:62573359-62573378 | Msa0463210:intron | 25.0% |
| !! | GTTTTACTTACTATCTCTTA+GGG | + | chr3_3:62573360-62573379 | Msa0463210:intron | 25.0% |
| ! | GTTGAAATAATCTATGGAAA+CGG | + | chr3_3:62573438-62573457 | Msa0463210:intron | 25.0% |
| !!! | AGCTTGTTTCTATAAGTTTA+AGG | + | chr3_3:62573487-62573506 | Msa0463210:intron | 25.0% |
| ! | ATTAAGCTGTTTATCAAAAC+AGG | + | chr3_3:62573622-62573641 | Msa0463210:intron | 25.0% |
| ! | TTAAGCTGTTTATCAAAACA+GGG | + | chr3_3:62573623-62573642 | Msa0463210:intron | 25.0% |
| ! | GTGAGACAAAAATTATTGTA+TGG | - | chr3_3:62573694-62573713 | None:intergenic | 25.0% |
| ! | AAATAAACTATGACAAGAGA+AGG | - | chr3_3:62573739-62573758 | None:intergenic | 25.0% |
| !! | TCTCTTGTCATAGTTTATTT+TGG | + | chr3_3:62573739-62573758 | Msa0463210:CDS | 25.0% |
| ! | ATATATTCCATTACATTGGA+AGG | - | chr3_3:62573997-62574016 | None:intergenic | 25.0% |
| ! | CAAGATATATTCCATTACAT+TGG | - | chr3_3:62574001-62574020 | None:intergenic | 25.0% |
| ! | CTAAGTTTGTGTAAAATACA+TGG | + | chr3_3:62574176-62574195 | Msa0463210:intron | 25.0% |
| ! | CTAAGTTTGAGTAAAATACA+TGG | + | chr3_3:62574223-62574242 | Msa0463210:intron | 25.0% |
| ! | AATACATGGATAATAGTTTG+AGG | + | chr3_3:62574237-62574256 | Msa0463210:intron | 25.0% |
| ! | TAAAACAGTAACAAGTCAAA+CGG | + | chr3_3:62574295-62574314 | Msa0463210:intron | 25.0% |
| !!! | AAAATTGCACTGATTAAGAA+AGG | - | chr3_3:62574677-62574696 | None:intergenic | 25.0% |
| ! | ACTACAAAGTATAGATGATT+GGG | + | chr3_3:62574799-62574818 | Msa0463210:CDS | 25.0% |
| ! | ACTTGATATTTCTTGGTATT+TGG | - | chr3_3:62574880-62574899 | None:intergenic | 25.0% |
| ! | CAAACAATAACTTAGACTAA+AGG | - | chr3_3:62575074-62575093 | None:intergenic | 25.0% |
| !! | GATATCAATTTTGTCTCTTA+CGG | + | chr3_3:62575114-62575133 | Msa0463210:intron | 25.0% |
| !!! | TCTTTTTTACAAGTTATGTC+AGG | - | chr3_3:62575292-62575311 | None:intergenic | 25.0% |
| !!! | AGAGATATTGAAAGTACTTA+AGG | + | chr3_3:62575423-62575442 | Msa0463210:CDS | 25.0% |
| ! | AAAGAAAAACTTAAACAAGG+TGG | - | chr3_3:62575630-62575649 | None:intergenic | 25.0% |
| !!! | TCATCATGTATTTGTTATTC+AGG | + | chr3_3:62575781-62575800 | Msa0463210:three_prime_UTR | 25.0% |
| !!! | CATCATGTATTTGTTATTCA+GGG | + | chr3_3:62575782-62575801 | Msa0463210:three_prime_UTR | 25.0% |
| !! | AAACATTTTGGCAAGCATTA+AGG | + | chr3_3:62571403-62571422 | Msa0463210:five_prime_UTR | 30.0% |
| !! | AACATTATGGTTGGTTTGTT+AGG | - | chr3_3:62571457-62571476 | None:intergenic | 30.0% |
| ACCAACCATAATGTTTGATT+TGG | + | chr3_3:62571462-62571481 | Msa0463210:five_prime_UTR | 30.0% | |
| ACCAAATCAAACATTATGGT+TGG | - | chr3_3:62571466-62571485 | None:intergenic | 30.0% | |
| AAGGGTTAAAAAGAAAGAAG+AGG | - | chr3_3:62571603-62571622 | None:intergenic | 30.0% | |
| !!! | TATGGGTGATGAGTTTTAAA+GGG | - | chr3_3:62571621-62571640 | None:intergenic | 30.0% |
| !! | TTATGGGTGATGAGTTTTAA+AGG | - | chr3_3:62571622-62571641 | None:intergenic | 30.0% |
| TTTCTGTTGTGATGAGTTAT+GGG | - | chr3_3:62571638-62571657 | None:intergenic | 30.0% | |
| AGAATAGATGTCAGAAAGAA+AGG | - | chr3_3:62571762-62571781 | None:intergenic | 30.0% | |
| GTATATTTCAAAAAGGCAGA+AGG | - | chr3_3:62571917-62571936 | None:intergenic | 30.0% | |
| TTGGGCTATGTTTAAGAAAA+TGG | + | chr3_3:62571944-62571963 | Msa0463210:intron | 30.0% | |
| TGGGCTATGTTTAAGAAAAT+GGG | + | chr3_3:62571945-62571964 | Msa0463210:intron | 30.0% | |
| GTAAGTAGTAACTAGTAGTA+AGG | + | chr3_3:62572023-62572042 | Msa0463210:intron | 30.0% | |
| ! | TGCTAAATATAAGGTTGGTT+TGG | + | chr3_3:62572388-62572407 | Msa0463210:intron | 30.0% |
| AAAAAATTCACAGTTGGAGT+GGG | - | chr3_3:62572468-62572487 | None:intergenic | 30.0% | |
| AAAAAAATTCACAGTTGGAG+TGG | - | chr3_3:62572469-62572488 | None:intergenic | 30.0% | |
| ATATTGTTACGAGGATACTA+CGG | + | chr3_3:62572876-62572895 | Msa0463210:CDS | 30.0% | |
| CAAATTAGGTACAATACCTT+TGG | - | chr3_3:62572945-62572964 | None:intergenic | 30.0% | |
| !! | CAAAGGTATTGTACCTAATT+TGG | + | chr3_3:62572943-62572962 | Msa0463210:intron | 30.0% |
| GTATTCAACATGATTTATGG+TGG | + | chr3_3:62573018-62573037 | Msa0463210:intron | 30.0% | |
| TACGCATAGATAAACTTGAT+TGG | - | chr3_3:62573121-62573140 | None:intergenic | 30.0% | |
| ATTAGGCAATTGTTCGTTAT+GGG | - | chr3_3:62573159-62573178 | None:intergenic | 30.0% | |
| TAGAATAGTATATACGCTAC+CGG | - | chr3_3:62573188-62573207 | None:intergenic | 30.0% | |
| GAGACTGTTGAAATAATCTA+TGG | + | chr3_3:62573432-62573451 | Msa0463210:intron | 30.0% | |
| AAACAAGCTGAAAACAGTTA+TGG | - | chr3_3:62573476-62573495 | None:intergenic | 30.0% | |
| CAAAAATTATTGTATGGTGC+AGG | - | chr3_3:62573688-62573707 | None:intergenic | 30.0% | |
| ! | TAATTTTTGTCTCACTTCAC+AGG | + | chr3_3:62573699-62573718 | Msa0463210:intron | 30.0% |
| !!! | CTTGTCATAGTTTATTTTGG+AGG | + | chr3_3:62573742-62573761 | Msa0463210:CDS | 30.0% |
| TTTGCGATATATTCTTCAAG+TGG | - | chr3_3:62573814-62573833 | None:intergenic | 30.0% | |
| AAAGATTCTCGTTCATATTC+AGG | + | chr3_3:62573840-62573859 | Msa0463210:CDS | 30.0% | |
| AGATATCTATCTCCAATACT+TGG | - | chr3_3:62573913-62573932 | None:intergenic | 30.0% | |
| TGTTAAACCTTCCAATGTAA+TGG | + | chr3_3:62573987-62574006 | Msa0463210:intron | 30.0% | |
| GAATATATCTTGTCTTACCT+GGG | + | chr3_3:62574009-62574028 | Msa0463210:intron | 30.0% | |
| ! | TTACTCAAACTTAGTCTTCA+GGG | - | chr3_3:62574217-62574236 | None:intergenic | 30.0% |
| ! | TTTACTCAAACTTAGTCTTC+AGG | - | chr3_3:62574218-62574237 | None:intergenic | 30.0% |
| AGTGAAAAATGACATGTTGT+AGG | + | chr3_3:62574336-62574355 | Msa0463210:intron | 30.0% | |
| !! | AAAATATGTTTTAGGCTACC+TGG | - | chr3_3:62574582-62574601 | None:intergenic | 30.0% |
| CACTACAAAGTATAGATGAT+TGG | + | chr3_3:62574798-62574817 | Msa0463210:CDS | 30.0% | |
| ! | GTATGTCACTTGATATTTCT+TGG | - | chr3_3:62574887-62574906 | None:intergenic | 30.0% |
| AGAAAAGTTAGTGAAGGATT+TGG | - | chr3_3:62574931-62574950 | None:intergenic | 30.0% | |
| TACTTGAGAAAAGTTAGTGA+AGG | - | chr3_3:62574937-62574956 | None:intergenic | 30.0% | |
| AAGGTTACTTCAATGATGTT+AGG | + | chr3_3:62575173-62575192 | Msa0463210:intron | 30.0% | |
| TTCAATGAATTATGCAGTGA+TGG | + | chr3_3:62575361-62575380 | Msa0463210:intron | 30.0% | |
| !! | GATATTGAAAGTACTTAAGG+AGG | + | chr3_3:62575426-62575445 | Msa0463210:CDS | 30.0% |
| GTGGAAACTGCTAAAATATA+AGG | - | chr3_3:62575611-62575630 | None:intergenic | 30.0% | |
| GTACATCATATAACTTACAC+TGG | - | chr3_3:62575818-62575837 | None:intergenic | 30.0% | |
| ! | TTTTGGCAAGCATTAAGGTA+AGG | + | chr3_3:62571408-62571427 | Msa0463210:five_prime_UTR | 35.0% |
| CTTTCTGTTGTGATGAGTTA+TGG | - | chr3_3:62571639-62571658 | None:intergenic | 35.0% | |
| ! | AGACCTCAATTTGTTCTCTT+CGG | + | chr3_3:62571692-62571711 | Msa0463210:CDS | 35.0% |
| TTCTGACATCTATTCTCGTA+AGG | + | chr3_3:62571766-62571785 | Msa0463210:CDS | 35.0% | |
| !!! | TCTTGTTTTCATCTCTTACG+TGG | + | chr3_3:62571817-62571836 | Msa0463210:intron | 35.0% |
| CCAACATCAATTCTTTCCTT+GGG | - | chr3_3:62572074-62572093 | None:intergenic | 35.0% | |
| CCAAGGAAAGAATTGATGTT+GGG | + | chr3_3:62572072-62572091 | Msa0463210:intron | 35.0% | |
| CAACATTGAAACTCACTACT+GGG | - | chr3_3:62572111-62572130 | None:intergenic | 35.0% | |
| ACAACATTGAAACTCACTAC+TGG | - | chr3_3:62572112-62572131 | None:intergenic | 35.0% | |
| !! | ACTGACCTTATCTTTTTGAG+TGG | + | chr3_3:62572137-62572156 | Msa0463210:intron | 35.0% |
| !!! | CTGACCTTATCTTTTTGAGT+GGG | + | chr3_3:62572138-62572157 | Msa0463210:intron | 35.0% |
| ! | GTACAAGGTCATTACTCTTT+TGG | - | chr3_3:62572165-62572184 | None:intergenic | 35.0% |
| TAGGGTGAAGATTTAAGGAT+TGG | + | chr3_3:62572415-62572434 | Msa0463210:intron | 35.0% | |
| GATTTAAGGATTGGAGTGAT+AGG | + | chr3_3:62572424-62572443 | Msa0463210:intron | 35.0% | |
| AAAAATTCACAGTTGGAGTG+GGG | - | chr3_3:62572467-62572486 | None:intergenic | 35.0% | |
| AATCACTATGAGCATCTCTT+AGG | - | chr3_3:62572652-62572671 | None:intergenic | 35.0% | |
| TAGGCAGATATATTGTTACG+AGG | + | chr3_3:62572867-62572886 | Msa0463210:intron | 35.0% | |
| ! | ATACCTTTGGGAAAACTTGA+TGG | - | chr3_3:62572932-62572951 | None:intergenic | 35.0% |
| ATGCAGATATCTGCCAAATT+AGG | - | chr3_3:62572959-62572978 | None:intergenic | 35.0% | |
| TCAAGTTTATCTATGCGTAG+TGG | + | chr3_3:62573122-62573141 | Msa0463210:intron | 35.0% | |
| GATTAGGCAATTGTTCGTTA+TGG | - | chr3_3:62573160-62573179 | None:intergenic | 35.0% | |
| ACTATCTCTTAGGGTATGTT+TGG | + | chr3_3:62573369-62573388 | Msa0463210:intron | 35.0% | |
| ! | ATAAGCGTTTGTTGCACAAA+TGG | + | chr3_3:62573584-62573603 | Msa0463210:intron | 35.0% |
| ! | TAAGCGTTTGTTGCACAAAT+GGG | + | chr3_3:62573585-62573604 | Msa0463210:intron | 35.0% |
| TATCTATCTCCAATACTTGG+AGG | - | chr3_3:62573910-62573929 | None:intergenic | 35.0% | |
| GGAATATATCTTGTCTTACC+TGG | + | chr3_3:62574008-62574027 | Msa0463210:intron | 35.0% | |
| ! | TGTGTGCAACGAAACAATTT+TGG | - | chr3_3:62574039-62574058 | None:intergenic | 35.0% |
| GTGTACTCAATGATGAAACA+TGG | + | chr3_3:62574067-62574086 | Msa0463210:intron | 35.0% | |
| ! | TACTCAAACTTAGTCTTCAG+GGG | - | chr3_3:62574216-62574235 | None:intergenic | 35.0% |
| CATGTTGTAGGATGAAAGAA+TGG | + | chr3_3:62574348-62574367 | Msa0463210:intron | 35.0% | |
| !!! | CAGTGCAATTTTTAGTGAGT+TGG | + | chr3_3:62574685-62574704 | Msa0463210:intron | 35.0% |
| ATAAAGCTATGCAAGGAACT+TGG | + | chr3_3:62574749-62574768 | Msa0463210:CDS | 35.0% | |
| TCTATATAACCAACTCCTTC+TGG | + | chr3_3:62575040-62575059 | Msa0463210:intron | 35.0% | |
| TAACCTTAAAACCGTCTTTC+CGG | - | chr3_3:62575160-62575179 | None:intergenic | 35.0% | |
| TACAAGTTATGTCAGGTTAG+AGG | - | chr3_3:62575285-62575304 | None:intergenic | 35.0% | |
| AAGAAGGAAAAGACCAAAGC+AGG | - | chr3_3:62571560-62571579 | None:intergenic | 40.0% | |
| GAGAACACACCTAAGAAACA+TGG | + | chr3_3:62571658-62571677 | Msa0463210:exon | 40.0% | |
| AGAACAAATTGAGGTCTTGC+AGG | - | chr3_3:62571689-62571708 | None:intergenic | 40.0% | |
| GATCCGAAGAGAACAAATTG+AGG | - | chr3_3:62571698-62571717 | None:intergenic | 40.0% | |
| AAGTGCCTATTGTAGCTTGA+GGG | - | chr3_3:62572051-62572070 | None:intergenic | 40.0% | |
| CCCAAGGAAAGAATTGATGT+TGG | + | chr3_3:62572071-62572090 | Msa0463210:intron | 40.0% | |
| CCCAACATCAATTCTTTCCT+TGG | - | chr3_3:62572075-62572094 | None:intergenic | 40.0% | |
| TGGTCCCACTCAAAAAGATA+AGG | - | chr3_3:62572145-62572164 | None:intergenic | 40.0% | |
| !! | ATAAGGTTGGTTTGGTGTCT+AGG | + | chr3_3:62572396-62572415 | Msa0463210:intron | 40.0% |
| !! | TAAGGTTGGTTTGGTGTCTA+GGG | + | chr3_3:62572397-62572416 | Msa0463210:intron | 40.0% |
| ! | GTGTCTAGGGTGAAGATTTA+AGG | + | chr3_3:62572410-62572429 | Msa0463210:intron | 40.0% |
| CAAGACATGTTGCAATAACG+AGG | - | chr3_3:62572587-62572606 | None:intergenic | 40.0% | |
| CTCGTTATTGCAACATGTCT+TGG | + | chr3_3:62572585-62572604 | Msa0463210:intron | 40.0% | |
| TGGCAAATATGTGTGTGAAG+TGG | + | chr3_3:62572730-62572749 | Msa0463210:intron | 40.0% | |
| !! | TTGATGACGAGAAGCAAGAA+AGG | - | chr3_3:62572788-62572807 | None:intergenic | 40.0% |
| !! | CATGATTTATGGTGGATGCA+CGG | + | chr3_3:62573026-62573045 | Msa0463210:intron | 40.0% |
| ! | GTTCGTTATGGGTTTTTGTC+CGG | - | chr3_3:62573148-62573167 | None:intergenic | 40.0% |
| ACAATTGCCTAATCTTCCTC+CGG | + | chr3_3:62573166-62573185 | Msa0463210:intron | 40.0% | |
| AATAGTATATACGCTACCGG+AGG | - | chr3_3:62573185-62573204 | None:intergenic | 40.0% | |
| TAGGATTACCAGCTCTACAT+TGG | + | chr3_3:62573258-62573277 | Msa0463210:intron | 40.0% | |
| CTGCACGAACTTATACAAAC+AGG | - | chr3_3:62573286-62573305 | None:intergenic | 40.0% | |
| CTGTTTGTATAAGTTCGTGC+AGG | + | chr3_3:62573284-62573303 | Msa0463210:intron | 40.0% | |
| ! | AAGCGTTTGTTGCACAAATG+GGG | + | chr3_3:62573586-62573605 | Msa0463210:intron | 40.0% |
| AATTATTGTATGGTGCAGGC+AGG | - | chr3_3:62573684-62573703 | None:intergenic | 40.0% | |
| !! | TTTTGGAGGCAATGATTCCA+TGG | + | chr3_3:62573756-62573775 | Msa0463210:CDS | 40.0% |
| TTTGGAGGCAATGATTCCAT+GGG | + | chr3_3:62573757-62573776 | Msa0463210:CDS | 40.0% | |
| ATTCTTCAAGTGGCACATGA+GGG | - | chr3_3:62573804-62573823 | None:intergenic | 40.0% | |
| TATTCTTCAAGTGGCACATG+AGG | - | chr3_3:62573805-62573824 | None:intergenic | 40.0% | |
| CAATACTTGGAGGACACTAA+TGG | - | chr3_3:62573900-62573919 | None:intergenic | 40.0% | |
| CATTAGTGTCCTCCAAGTAT+TGG | + | chr3_3:62573898-62573917 | Msa0463210:intron | 40.0% | |
| !! | GAAACAATTTTGGAGAACCC+AGG | - | chr3_3:62574029-62574048 | None:intergenic | 40.0% |
| ! | ACTCAAACTTAGTCTTCAGG+GGG | - | chr3_3:62574215-62574234 | None:intergenic | 40.0% |
| AGTAACAAGTCAAACGGATG+AGG | + | chr3_3:62574301-62574320 | Msa0463210:intron | 40.0% | |
| GTAACAAGTCAAACGGATGA+GGG | + | chr3_3:62574302-62574321 | Msa0463210:intron | 40.0% | |
| ! | TGATACGTGTCTTTTCAGAG+AGG | - | chr3_3:62574511-62574530 | None:intergenic | 40.0% |
| !! | ACTTTTTCTTCATGGACAGG+AGG | - | chr3_3:62574548-62574567 | None:intergenic | 40.0% |
| TACAAGCGTCAGAATAGCTT+CGG | - | chr3_3:62574730-62574749 | None:intergenic | 40.0% | |
| CGCTTGTATAAAGCTATGCA+AGG | + | chr3_3:62574742-62574761 | Msa0463210:CDS | 40.0% | |
| TCGATGCTTTCTTTGCTAGA+TGG | + | chr3_3:62574969-62574988 | Msa0463210:intron | 40.0% | |
| ATATAACCAACTCCTTCTGG+TGG | + | chr3_3:62575043-62575062 | Msa0463210:intron | 40.0% | |
| TATAACCAACTCCTTCTGGT+GGG | + | chr3_3:62575044-62575063 | Msa0463210:intron | 40.0% | |
| ! | TCAGTTTTGCAGTTTGTACC+CGG | + | chr3_3:62575138-62575157 | Msa0463210:intron | 40.0% |
| AACCTTAAAACCGTCTTTCC+GGG | - | chr3_3:62575159-62575178 | None:intergenic | 40.0% | |
| CAGGTTAGAGGACACTAAAA+GGG | - | chr3_3:62575273-62575292 | None:intergenic | 40.0% | |
| TCAGGTTAGAGGACACTAAA+AGG | - | chr3_3:62575274-62575293 | None:intergenic | 40.0% | |
| AAGTACTTAAGGAGGCTGAT+TGG | + | chr3_3:62575434-62575453 | Msa0463210:CDS | 40.0% | |
| TATGATCTTGTTGCTGCTGA+TGG | + | chr3_3:62575511-62575530 | Msa0463210:CDS | 40.0% | |
| ATGATCTTGTTGCTGCTGAT+GGG | + | chr3_3:62575512-62575531 | Msa0463210:CDS | 40.0% | |
| ! | TTTTCACAGAGAGGTTCAGT+GGG | + | chr3_3:62575564-62575583 | Msa0463210:CDS | 40.0% |
| TTCAGTGGGATTAGGATGTT+GGG | + | chr3_3:62575578-62575597 | Msa0463210:exon | 40.0% | |
| ! | AAGAGGCATACGTAAGACAG+AGG | - | chr3_3:62571586-62571605 | None:intergenic | 45.0% |
| CAGGTGCAACCATGTTTCTT+AGG | - | chr3_3:62571670-62571689 | None:intergenic | 45.0% | |
| TCAGTTACAGCCATAGTGGT+TGG | + | chr3_3:62571732-62571751 | Msa0463210:CDS | 45.0% | |
| CAGTTACAGCCATAGTGGTT+GGG | + | chr3_3:62571733-62571752 | Msa0463210:CDS | 45.0% | |
| AGTTACAGCCATAGTGGTTG+GGG | + | chr3_3:62571734-62571753 | Msa0463210:CDS | 45.0% | |
| AGTGCCTATTGTAGCTTGAG+GGG | - | chr3_3:62572050-62572069 | None:intergenic | 45.0% | |
| ! | GAAGTGCCTATTGTAGCTTG+AGG | - | chr3_3:62572052-62572071 | None:intergenic | 45.0% |
| GTAACCGTTAGCATCACACT+CGG | - | chr3_3:62572512-62572531 | None:intergenic | 45.0% | |
| GCTCATAGTGATTGCAGAGT+AGG | + | chr3_3:62572659-62572678 | Msa0463210:intron | 45.0% | |
| TGTTACGAGGATACTACGGA+TGG | + | chr3_3:62572880-62572899 | Msa0463210:CDS | 45.0% | |
| GGAAAACTTGATGGAGGACT+TGG | - | chr3_3:62572923-62572942 | None:intergenic | 45.0% | |
| ! | CCTTTGGGAAAACTTGATGG+AGG | - | chr3_3:62572929-62572948 | None:intergenic | 45.0% |
| ! | CCTCCATCAAGTTTTCCCAA+AGG | + | chr3_3:62572926-62572945 | Msa0463210:CDS | 45.0% |
| GTTTATCTATGCGTAGTGGC+CGG | + | chr3_3:62573126-62573145 | Msa0463210:intron | 45.0% | |
| TGCACAAATGGGGTTACAGA+CGG | + | chr3_3:62573596-62573615 | Msa0463210:intron | 45.0% | |
| ! | TCAAACTTAGTCTTCAGGGG+GGG | - | chr3_3:62574213-62574232 | None:intergenic | 45.0% |
| ! | CTCAAACTTAGTCTTCAGGG+GGG | - | chr3_3:62574214-62574233 | None:intergenic | 45.0% |
| !!! | CGCACTTTTTCTTCATGGAC+AGG | - | chr3_3:62574551-62574570 | None:intergenic | 45.0% |
| ! | GTCCATGAAGAAAAAGTGCG+CGG | + | chr3_3:62574551-62574570 | Msa0463210:CDS | 45.0% |
| !!! | TTCCGCGCACTTTTTCTTCA+TGG | - | chr3_3:62574556-62574575 | None:intergenic | 45.0% |
| ! | CTAAAGGTTTTCCCACCAGA+AGG | - | chr3_3:62575058-62575077 | None:intergenic | 45.0% |
| ! | TACCCGGAAAGACGGTTTTA+AGG | + | chr3_3:62575154-62575173 | Msa0463210:intron | 45.0% |
| TGGTATCCATTTAGCAGCTG+AGG | + | chr3_3:62575381-62575400 | Msa0463210:CDS | 45.0% | |
| GGTATCCATTTAGCAGCTGA+GGG | + | chr3_3:62575382-62575401 | Msa0463210:CDS | 45.0% | |
| GTATCCATTTAGCAGCTGAG+GGG | + | chr3_3:62575383-62575402 | Msa0463210:CDS | 45.0% | |
| GAACATTGAATCCTTCCGAG+TGG | + | chr3_3:62575539-62575558 | Msa0463210:CDS | 45.0% | |
| CTCTCTGTGAAAAGTCCACT+CGG | - | chr3_3:62575557-62575576 | None:intergenic | 45.0% | |
| ! | CTTTTCACAGAGAGGTTCAG+TGG | + | chr3_3:62575563-62575582 | Msa0463210:CDS | 45.0% |
| GTTCAGTGGGATTAGGATGT+TGG | + | chr3_3:62575577-62575596 | Msa0463210:exon | 45.0% | |
| !!! | ATTTTATGAATTTTTTTTTT+TGG | - | chr3_3:62574151-62574170 | None:intergenic | 5.0% |
| CAAACCGCTTCCTAAGCTTG+TGG | - | chr3_3:62571531-62571550 | None:intergenic | 50.0% | |
| CACAAGCTTAGGAAGCGGTT+TGG | + | chr3_3:62571529-62571548 | Msa0463210:five_prime_UTR | 50.0% | |
| CGTAAGACAGAGGCAGAAGA+AGG | - | chr3_3:62571576-62571595 | None:intergenic | 50.0% | |
| GCTGTAACTGAGCTGAACGA+TGG | - | chr3_3:62571723-62571742 | None:intergenic | 50.0% | |
| CAGCTCAGTTACAGCCATAG+TGG | + | chr3_3:62571728-62571747 | Msa0463210:CDS | 50.0% | |
| GAAAGGAACCCCAACCACTA+TGG | - | chr3_3:62571745-62571764 | None:intergenic | 50.0% | |
| AGGTCCCCTCAAGCTACAAT+AGG | + | chr3_3:62572043-62572062 | Msa0463210:intron | 50.0% | |
| GCTACAATAGGCACTTCCCA+AGG | + | chr3_3:62572055-62572074 | Msa0463210:intron | 50.0% | |
| TTGGAGTGATAGGAAGACCG+AGG | + | chr3_3:62572434-62572453 | Msa0463210:intron | 50.0% | |
| TGGAGTGATAGGAAGACCGA+GGG | + | chr3_3:62572435-62572454 | Msa0463210:intron | 50.0% | |
| CACTCCGAGTGTGATGCTAA+CGG | + | chr3_3:62572505-62572524 | Msa0463210:intron | 50.0% | |
| CTCTTAGGAGAATGCGAGGA+AGG | - | chr3_3:62572637-62572656 | None:intergenic | 50.0% | |
| GCATCTCTTAGGAGAATGCG+AGG | - | chr3_3:62572641-62572660 | None:intergenic | 50.0% | |
| TACGCTACCGGAGGAAGATT+AGG | - | chr3_3:62573176-62573195 | None:intergenic | 50.0% | |
| AACAGGTGCCAATGTAGAGC+TGG | - | chr3_3:62573269-62573288 | None:intergenic | 50.0% | |
| ! | GTGTCTTTTCAGAGAGGCTC+TGG | - | chr3_3:62574505-62574524 | None:intergenic | 50.0% |
| ! | AAAAAGTGCGCGGAAACACC+AGG | + | chr3_3:62574561-62574580 | Msa0463210:CDS | 50.0% |
| ! | GTTTTCCCACCAGAAGGAGT+TGG | - | chr3_3:62575052-62575071 | None:intergenic | 50.0% |
| GCAGTTTGTACCCGGAAAGA+CGG | + | chr3_3:62575146-62575165 | Msa0463210:intron | 50.0% | |
| AGCTGAGGGGAGCAAAATTG+TGG | + | chr3_3:62575396-62575415 | Msa0463210:CDS | 50.0% | |
| ATAGACTTCCAGTGGAGGCA+TGG | - | chr3_3:62575463-62575482 | None:intergenic | 50.0% | |
| TGTGCATAGACTTCCAGTGG+AGG | - | chr3_3:62575468-62575487 | None:intergenic | 50.0% | |
| CAGTGTGCATAGACTTCCAG+TGG | - | chr3_3:62575471-62575490 | None:intergenic | 50.0% | |
| CTGTGAAAAGTCCACTCGGA+AGG | - | chr3_3:62575553-62575572 | None:intergenic | 50.0% | |
| !! | CGAGTGGACTTTTCACAGAG+AGG | + | chr3_3:62575555-62575574 | Msa0463210:CDS | 50.0% |
| CAGAGAGGTTCAGTGGGATT+AGG | + | chr3_3:62575570-62575589 | Msa0463210:CDS | 50.0% | |
| CGTTGACCCTCCACAAGCTT+AGG | + | chr3_3:62571518-62571537 | Msa0463210:five_prime_UTR | 55.0% | |
| CCGCTTCCTAAGCTTGTGGA+GGG | - | chr3_3:62571527-62571546 | None:intergenic | 55.0% | |
| CCCTCCACAAGCTTAGGAAG+CGG | + | chr3_3:62571524-62571543 | Msa0463210:five_prime_UTR | 55.0% | |
| ACCGCTTCCTAAGCTTGTGG+AGG | - | chr3_3:62571528-62571547 | None:intergenic | 55.0% | |
| TCCATGGGTCCTCACTCATC+TGG | + | chr3_3:62573772-62573791 | Msa0463210:CDS | 55.0% | |
| ACCAGATGAGTGAGGACCCA+TGG | - | chr3_3:62573776-62573795 | None:intergenic | 55.0% | |
| GGTCCTCACTCATCTGGTCT+AGG | + | chr3_3:62573778-62573797 | Msa0463210:CDS | 55.0% | |
| TGCTCCCCTCAGCTGCTAAA+TGG | - | chr3_3:62575390-62575409 | None:intergenic | 55.0% | |
| ATTGGAAGCCATGCCTCCAC+TGG | + | chr3_3:62575452-62575471 | Msa0463210:CDS | 55.0% | |
| TGGAGTGGGGATCGAACCCT+CGG | - | chr3_3:62572454-62572473 | None:intergenic | 60.0% | |
| GGGCCTAGACCAGATGAGTG+AGG | - | chr3_3:62573784-62573803 | None:intergenic | 60.0% | |
| ! | CGGTTTGGCGCTGCCTGCTT+TGG | + | chr3_3:62571544-62571563 | Msa0463210:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 62571385 | 62575873 | 62571385 | ID=Msa0463210;Name=Msa0463210 |
| chr3_3 | mRNA | 62571385 | 62575873 | 62571385 | ID=Msa0463210-mRNA-1;Parent=Msa0463210;Name=Msa0463210-mRNA-1;_AED=0.18;_eAED=0.18;_QI=292|0.8|0.83|1|1|1|6|282|264 |
| chr3_3 | exon | 62571385 | 62571787 | 62571385 | ID=Msa0463210-mRNA-1:exon:13401;Parent=Msa0463210-mRNA-1 |
| chr3_3 | exon | 62572870 | 62572947 | 62572870 | ID=Msa0463210-mRNA-1:exon:13402;Parent=Msa0463210-mRNA-1 |
| chr3_3 | exon | 62573721 | 62573861 | 62573721 | ID=Msa0463210-mRNA-1:exon:13403;Parent=Msa0463210-mRNA-1 |
| chr3_3 | exon | 62574482 | 62574582 | 62574482 | ID=Msa0463210-mRNA-1:exon:13404;Parent=Msa0463210-mRNA-1 |
| chr3_3 | exon | 62574688 | 62574837 | 62574688 | ID=Msa0463210-mRNA-1:exon:13405;Parent=Msa0463210-mRNA-1 |
| chr3_3 | exon | 62575378 | 62575873 | 62575378 | ID=Msa0463210-mRNA-1:exon:13406;Parent=Msa0463210-mRNA-1 |
| chr3_3 | five_prime_UTR | 62571385 | 62571676 | 62571385 | ID=Msa0463210-mRNA-1:five_prime_utr;Parent=Msa0463210-mRNA-1 |
| chr3_3 | CDS | 62571677 | 62571787 | 62571677 | ID=Msa0463210-mRNA-1:cds;Parent=Msa0463210-mRNA-1 |
| chr3_3 | CDS | 62572870 | 62572947 | 62572870 | ID=Msa0463210-mRNA-1:cds;Parent=Msa0463210-mRNA-1 |
| chr3_3 | CDS | 62573721 | 62573861 | 62573721 | ID=Msa0463210-mRNA-1:cds;Parent=Msa0463210-mRNA-1 |
| chr3_3 | CDS | 62574482 | 62574582 | 62574482 | ID=Msa0463210-mRNA-1:cds;Parent=Msa0463210-mRNA-1 |
| chr3_3 | CDS | 62574688 | 62574837 | 62574688 | ID=Msa0463210-mRNA-1:cds;Parent=Msa0463210-mRNA-1 |
| chr3_3 | CDS | 62575378 | 62575591 | 62575378 | ID=Msa0463210-mRNA-1:cds;Parent=Msa0463210-mRNA-1 |
| chr3_3 | three_prime_UTR | 62575592 | 62575873 | 62575592 | ID=Msa0463210-mRNA-1:three_prime_utr;Parent=Msa0463210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
