AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459380 MtrunA17_Chr1g0193411 95.652 391 2 2 1 383 1 384 0.0 754
Msa1459380 MtrunA17_Chr8g0380081 25.606 289 190 7 1 281 1 272 3.31e-15 75.9
Msa1459380 MtrunA17_Chr7g0246801 30.282 284 160 16 1 273 1 257 2.94e-14 74.3
Msa1459380 MtrunA17_Chr6g0482931 24.784 347 239 10 1 334 1 338 6.04e-14 73.2
Msa1459380 MtrunA17_Chr7g0228021 30.508 118 72 2 133 250 1031 1138 9.86e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459380 AT5G26680.2 81.074 391 58 3 1 383 1 383 0.0 646
Msa1459380 AT5G26680.5 82.880 368 48 2 1 360 1 361 0.0 628
Msa1459380 AT5G26680.4 82.880 368 48 2 1 360 1 361 0.0 628
Msa1459380 AT5G26680.3 82.880 368 48 2 1 360 1 361 0.0 628
Msa1459380 AT5G26680.1 83.060 366 47 2 1 358 1 359 0.0 623
Msa1459380 AT1G29630.2 28.214 280 176 7 1 271 1 264 1.01e-17 85.5
Msa1459380 AT3G28030.4 31.579 133 81 3 118 250 721 843 2.82e-13 72.0
Msa1459380 AT3G28030.2 31.579 133 81 3 118 250 913 1035 3.24e-13 72.0
Msa1459380 AT3G28030.1 31.579 133 81 3 118 250 913 1035 3.66e-13 71.6
Msa1459380 AT3G28030.3 31.579 133 81 3 118 250 939 1061 3.67e-13 71.6
Msa1459380 AT1G01880.2 28.629 248 153 10 19 263 16 242 8.01e-13 70.5

Find 93 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGACTTATGTATACTTTC+TGG 0.201124 tig0040220:+16635 Msa1459380:CDS
TTTGTTCTCCTTCATTGATT+TGG 0.219066 tig0040220:-13821 None:intergenic
ATTAGATGGCGAAGAAATTT+AGG 0.232530 tig0040220:-16446 None:intergenic
TTGTTCTCCTTCATTGATTT+GGG 0.261805 tig0040220:-13820 None:intergenic
GCAACGTCAAATTCCATTAC+TGG 0.277285 tig0040220:-16491 None:intergenic
CAATGTGTGCCACAGGTATT+GGG 0.301115 tig0040220:+16787 Msa1459380:intron
ACCAGATGATTGGCCGTATC+AGG 0.302586 tig0040220:+17141 Msa1459380:CDS
TAAATTTCTTCGCCATCTAA+TGG 0.313159 tig0040220:+16448 Msa1459380:CDS
AGTTGGATTTGTATCTTAGA+TGG 0.321968 tig0040220:+19537 Msa1459380:exon
ATAGTTATTACTTCTTCATC+TGG 0.327089 tig0040220:-17235 None:intergenic
TCAAACAACGATGGGTATTA+AGG 0.329268 tig0040220:+13652 Msa1459380:exon
TTGAACTAGGATCCATTAGA+TGG 0.369663 tig0040220:-16460 None:intergenic
GTACATACCTTCCGTTTGAT+AGG 0.370776 tig0040220:-17706 None:intergenic
AGAATGGGTTCAACAGTGAT+AGG 0.372124 tig0040220:+17410 Msa1459380:CDS
TGTGCTGCACTTTGCAAAGC+TGG 0.379737 tig0040220:+15255 Msa1459380:CDS
GACATGGATTCCTTAACGTT+TGG 0.380008 tig0040220:+16419 Msa1459380:CDS
TGAAACCACTTACAAGAAAC+TGG 0.396979 tig0040220:-13897 None:intergenic
AGCTCTTGATTCTTCATCTC+CGG 0.402266 tig0040220:-14637 None:intergenic
TCCTGATACGGCCAATCATC+TGG 0.411236 tig0040220:-17142 None:intergenic
AACAAATTCGAATCTTACTT+TGG 0.413135 tig0040220:+13838 Msa1459380:CDS
TGACGGCAGAAAGATGAATA+AGG 0.423648 tig0040220:-13594 None:intergenic
TTTAGGAGCTCCAAACGTTA+AGG 0.426815 tig0040220:-16429 None:intergenic
GTATACATAAGTCAATAAAT+TGG 0.431271 tig0040220:-16628 None:intergenic
ACATTTCTAGTAAATGAGAA+TGG 0.445257 tig0040220:+17394 Msa1459380:CDS
GTGAATGATGCTAAAGCTAA+AGG 0.452022 tig0040220:+19470 Msa1459380:CDS
TGCAACGTCACCTCAACAAC+AGG 0.456473 tig0040220:-15142 None:intergenic
ATGAAGTACTTAATCTTAAG+TGG 0.475016 tig0040220:+17206 Msa1459380:CDS
CGAGGCTACCGCGGGTTTGA+CGG 0.478333 tig0040220:+14783 Msa1459380:CDS
TTCAAAGAAGATTCCAGTAA+TGG 0.481227 tig0040220:+16478 Msa1459380:CDS
TTGCAGAGGATAATGTGAAC+TGG 0.481897 tig0040220:-13621 None:intergenic
ACATTGAGCCTCTGCTTCTG+AGG 0.483766 tig0040220:-15235 None:intergenic
TCATCATCAGTTATGACCTC+TGG 0.494511 tig0040220:-17187 None:intergenic
TTAGCTTTAGCATCATTCAC+TGG 0.498319 tig0040220:-19486 None:intergenic
ACTGGAATCTTCTTTGAACT+AGG 0.498453 tig0040220:-16473 None:intergenic
ATCCATCAGTACCTATCAAA+CGG 0.498859 tig0040220:+17695 Msa1459380:CDS
TGAATGATGCTAAAGCTAAA+GGG 0.506104 tig0040220:+19471 Msa1459380:CDS
GTTGGATTTGTATCTTAGAT+GGG 0.507708 tig0040220:+19538 Msa1459380:exon
TGCACTTTGCAAAGCTGGAA+AGG 0.511154 tig0040220:+15260 Msa1459380:CDS
TAGATTGTTGTGGGAAGAAG+TGG 0.512021 tig0040220:+13992 Msa1459380:intron
GGTACTGATGGATTTGCAGT+TGG 0.513657 tig0040220:-17685 None:intergenic
TTCCGTTTGATAGGTACTGA+TGG 0.513936 tig0040220:-17697 None:intergenic
CATTTCTAGTAAATGAGAAT+GGG 0.515548 tig0040220:+17395 Msa1459380:CDS
GGTACCAGGTACCAGATGAT+TGG 0.518316 tig0040220:+17131 Msa1459380:intron
CAATCAGACTTCTAGAAGCC+GGG 0.522415 tig0040220:+14473 Msa1459380:CDS
TAGCATCAACAGCAATCTTA+CGG 0.527772 tig0040220:-13861 None:intergenic
ACAATCAGACTTCTAGAAGC+CGG 0.528458 tig0040220:+14472 Msa1459380:CDS
CATGGGAGTGCCTGTTGTTG+AGG 0.530578 tig0040220:+15132 Msa1459380:CDS
AGTCGTCGAGCCTCCTGATA+CGG 0.531492 tig0040220:-17154 None:intergenic
CATTGAGCCTCTGCTTCTGA+GGG 0.532841 tig0040220:-15234 None:intergenic
CGTCAAACCCGCGGTAGCCT+CGG 0.539383 tig0040220:-14782 None:intergenic
AGGGAGTAACAAGAAAACTA+AGG 0.546996 tig0040220:+19490 Msa1459380:CDS
GAATTACACTGGCTTCATCC+CGG 0.555023 tig0040220:-14491 None:intergenic
GTCATTTCAGGCTGACAACA+AGG 0.555566 tig0040220:+14912 Msa1459380:intron
GTTATTACTTCTTCATCTGG+AGG 0.556809 tig0040220:-17232 None:intergenic
TGCTGTGGCTTCTGAAGACA+TGG 0.557625 tig0040220:+16403 Msa1459380:CDS
ATTCTCATTCAAACAACGAT+GGG 0.565501 tig0040220:+13644 Msa1459380:exon
TAATGCTCCCAAATCAATGA+AGG 0.565914 tig0040220:+13813 Msa1459380:CDS
AAAGAGAGCCGAGGCTACCG+CGG 0.575078 tig0040220:+14774 Msa1459380:CDS
TAAGTCAATAAATTGGTCCA+TGG 0.575375 tig0040220:-16621 None:intergenic
GATTACTGTGACAACATTCG+AGG 0.577617 tig0040220:+16662 Msa1459380:CDS
GAAATGTTGACTAATGAAGC+TGG 0.580121 tig0040220:+14019 Msa1459380:CDS
AATGGAATTTGACGTTGCAA+AGG 0.585097 tig0040220:+16496 Msa1459380:CDS
AAGAGAGCCGAGGCTACCGC+GGG 0.585100 tig0040220:+14775 Msa1459380:CDS
AATTCTCATTCAAACAACGA+TGG 0.591195 tig0040220:+13643 Msa1459380:exon
ACGGCCAATCATCTGGTACC+TGG 0.591435 tig0040220:-17135 None:intergenic
AAGAAAACTAAGGCCGGTGG+CGG 0.593257 tig0040220:+19500 Msa1459380:CDS
AGAACAAGTCATCACAAGGC+CGG 0.593889 tig0040220:+17561 Msa1459380:CDS
TCTTGATTCTTCATCTCCGG+TGG 0.593963 tig0040220:-14634 None:intergenic
GGGTTTGACGGAAGCTCTAG+AGG 0.596065 tig0040220:+14795 Msa1459380:CDS
GAATGGGTTCAACAGTGATA+GGG 0.599805 tig0040220:+17411 Msa1459380:CDS
AATGTGTGCCACAGGTATTG+GGG 0.602638 tig0040220:+16788 Msa1459380:intron
ATCAGTACCTATCAAACGGA+AGG 0.602952 tig0040220:+17699 Msa1459380:CDS
CAACAGTGATAGGGTGACAA+AGG 0.605881 tig0040220:+17420 Msa1459380:CDS
GCAGGCACCCTCAGAAGCAG+AGG 0.611684 tig0040220:+15227 Msa1459380:intron
CACTTTACAGGAGAGTGCGC+GGG 0.614673 tig0040220:+13551 Msa1459380:five_prime_UTR
ACACTTTACAGGAGAGTGCG+CGG 0.615008 tig0040220:+13550 Msa1459380:five_prime_UTR
AGTAACAAGAAAACTAAGGC+CGG 0.615091 tig0040220:+19494 Msa1459380:CDS
ATGTGTGCCACAGGTATTGG+GGG 0.618919 tig0040220:+16789 Msa1459380:intron
TTACCACCGATTCAGGTACC+AGG 0.619372 tig0040220:+17117 Msa1459380:intron
TATTATACAGGTGTATGCTG+TGG 0.633214 tig0040220:+16388 Msa1459380:intron
ATTCAGTAAACGGACAGTGA+AGG 0.645257 tig0040220:+14948 Msa1459380:CDS
GGAGGAGCTAGATTTGACCA+TGG 0.645396 tig0040220:+16604 Msa1459380:CDS
AGATGATTGGCCGTATCAGG+AGG 0.645693 tig0040220:+17144 Msa1459380:CDS
GCAAAGAACAAGTCATCACA+AGG 0.651244 tig0040220:+17557 Msa1459380:CDS
TGGAAAACATAAGCAAAGAG+AGG 0.655385 tig0040220:+16862 Msa1459380:CDS
TAGAGCTTCCGTCAAACCCG+CGG 0.656861 tig0040220:-14791 None:intergenic
CAGTCTCTCAAAGAGAGCCG+AGG 0.661691 tig0040220:+14765 Msa1459380:intron
CTGAAGCTCATACGCCAACA+CGG 0.665576 tig0040220:+16822 Msa1459380:CDS
ATTTGCAAGGAATGTTTGCG+CGG 0.671541 tig0040220:+14449 Msa1459380:intron
AACAAGAAAACTAAGGCCGG+TGG 0.687823 tig0040220:+19497 Msa1459380:CDS
GTTTGAATGAGAATTTGCAG+AGG 0.689167 tig0040220:-13635 None:intergenic
TAATGTGAACTGGAGTGTGA+CGG 0.699602 tig0040220:-13611 None:intergenic
TGTGTGCCACAGGTATTGGG+GGG 0.726679 tig0040220:+16790 Msa1459380:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATTTAATAAAATAA+AGG - tig0040220:18264-18283 None:intergenic 0.0%
!!! TTTTATTAAATATTAATAAT+AGG + tig0040220:18267-18286 Msa1459380:intron 0.0%
!! TTTATTAAATATTAATAATA+GGG + tig0040220:18268-18287 Msa1459380:intron 0.0%
!!! TTTAATGTTGATTAATTTTT+AGG + tig0040220:13768-13787 Msa1459380:intron 10.0%
!!! TTAATGTTGATTAATTTTTA+GGG + tig0040220:13769-13788 Msa1459380:intron 10.0%
!!! AAACATTTTATATATTATAC+AGG + tig0040220:16376-16395 Msa1459380:intron 10.0%
!!! TTTTGTTTAATTTTTCTGTA+AGG + tig0040220:14376-14395 Msa1459380:intron 15.0%
!!! TTTGTTTAATTTTTCTGTAA+GGG + tig0040220:14377-14396 Msa1459380:intron 15.0%
!! ATATTGAAAAATTCAGTAAA+CGG + tig0040220:14938-14957 Msa1459380:CDS 15.0%
!!! TTATTTATTTTTCATTTCCA+TGG - tig0040220:15366-15385 None:intergenic 15.0%
!!! TATTAATTTTAGTTAACATG+TGG + tig0040220:15763-15782 Msa1459380:intron 15.0%
!!! ATTAATTTTAGTTAACATGT+GGG + tig0040220:15764-15783 Msa1459380:intron 15.0%
!! TCACTTTGAATAAAAATTAT+AGG + tig0040220:16114-16133 Msa1459380:intron 15.0%
!!! GTAATGTAACATTTAATTTT+GGG - tig0040220:16216-16235 None:intergenic 15.0%
!! TTAAATAGTTTCATAAATAG+TGG - tig0040220:16238-16257 None:intergenic 15.0%
!! TCAAATGCAAAAAATATTAA+AGG - tig0040220:16278-16297 None:intergenic 15.0%
!! AAAACAAAGAATTTCAAAAT+GGG - tig0040220:16901-16920 None:intergenic 15.0%
!! AAATTAATAAAATTTGACTG+TGG - tig0040220:17073-17092 None:intergenic 15.0%
!!! ATATCTATGTATCAATTTTT+TGG + tig0040220:17327-17346 Msa1459380:intron 15.0%
!!! ATGATTTTTTTTTCAATGTT+AGG + tig0040220:17514-17533 Msa1459380:intron 15.0%
!! AATAAATTATAATCACTTAC+CGG - tig0040220:17583-17602 None:intergenic 15.0%
!!! CTTAATTTTTTTGGTAAATT+TGG - tig0040220:18351-18370 None:intergenic 15.0%
!!! AAATATCAGCTTAATTTTTT+TGG - tig0040220:18360-18379 None:intergenic 15.0%
!! TTAATAAAGTAGAAATGAAA+AGG - tig0040220:19006-19025 None:intergenic 15.0%
!!! ATTACAGAAAATTGTTATTA+TGG + tig0040220:19063-19082 Msa1459380:intron 15.0%
!!! TTATTATCAATTTGTTTTCA+TGG - tig0040220:19173-19192 None:intergenic 15.0%
!!! TTTTCAATTATCTTTAACAT+TGG - tig0040220:19362-19381 None:intergenic 15.0%
!! TTTCAATTTCAACCTAAAAT+GGG + tig0040220:13915-13934 Msa1459380:intron 20.0%
!! AAAAAAAAGAAGAATTACAC+TGG - tig0040220:14505-14524 None:intergenic 20.0%
!! TAGAAGAAAATGCATTAATT+AGG - tig0040220:14735-14754 None:intergenic 20.0%
!!! TATTATAATGGATTGAAACA+AGG + tig0040220:15023-15042 Msa1459380:intron 20.0%
!! AGTATAGAATATATTCTCAA+CGG - tig0040220:15061-15080 None:intergenic 20.0%
!! AATATATTCTATACTCTTGT+AGG + tig0040220:15066-15085 Msa1459380:intron 20.0%
!!! TATCATTTTAGTTTTCAAGA+AGG - tig0040220:15310-15329 None:intergenic 20.0%
!!! TATCATTTTAGTTTTCAAGA+AGG - tig0040220:15310-15329 None:intergenic 20.0%
!! GTGTTTAATTAAAAACTAGA+GGG - tig0040220:15596-15615 None:intergenic 20.0%
!! AGTGTTTAATTAAAAACTAG+AGG - tig0040220:15597-15616 None:intergenic 20.0%
!!! TCGCTTTGAATAAAAATTAA+GGG - tig0040220:15625-15644 None:intergenic 20.0%
!!! GGTAATGTAACATTTAATTT+TGG - tig0040220:16217-16236 None:intergenic 20.0%
!!! CTTGTATTAATTTGATATGA+AGG - tig0040220:16321-16340 None:intergenic 20.0%
!! GTATACATAAGTCAATAAAT+TGG - tig0040220:16631-16650 None:intergenic 20.0%
!! GAAAACAAAGAATTTCAAAA+TGG - tig0040220:16902-16921 None:intergenic 20.0%
!!! AACTTAAAGTATTCTTTCAA+AGG + tig0040220:17268-17287 Msa1459380:intron 20.0%
!!! ACTTAAAGTATTCTTTCAAA+GGG + tig0040220:17269-17288 Msa1459380:intron 20.0%
!! TACATAGATATAACAAACAT+AGG - tig0040220:17318-17337 None:intergenic 20.0%
!!! TTTAGTTTTTCTTCTTCTTT+TGG + tig0040220:17844-17863 Msa1459380:intron 20.0%
!!! TTAGTTTTTCTTCTTCTTTT+GGG + tig0040220:17845-17864 Msa1459380:intron 20.0%
!! AATAATGTATATCCATATCT+CGG - tig0040220:18051-18070 None:intergenic 20.0%
!! ATTATTCATGCATTTGATAT+GGG + tig0040220:18065-18084 Msa1459380:intron 20.0%
!!! ATATGGGGTATTTTTTTTAT+TGG + tig0040220:18081-18100 Msa1459380:intron 20.0%
!! ATAAAATAAAGGAACACAAA+GGG - tig0040220:18253-18272 None:intergenic 20.0%
!! AATAAAATAAAGGAACACAA+AGG - tig0040220:18254-18273 None:intergenic 20.0%
!!! ATGTAGTTTTAAAATTTCTC+AGG - tig0040220:18679-18698 None:intergenic 20.0%
!!! AGAAATTTTAAAACTACATC+AGG + tig0040220:18680-18699 Msa1459380:intron 20.0%
!!! AGAAAATTGTTATTATGGTT+TGG + tig0040220:19068-19087 Msa1459380:intron 20.0%
! GAAATTGAGAGAAAAATAGA+GGG - tig0040220:13692-13711 None:intergenic 25.0%
! AGAAATTGAGAGAAAAATAG+AGG - tig0040220:13693-13712 None:intergenic 25.0%
! AACAAATTCGAATCTTACTT+TGG + tig0040220:13838-13857 Msa1459380:CDS 25.0%
! GTTTCAATTTCAACCTAAAA+TGG + tig0040220:13914-13933 Msa1459380:intron 25.0%
!! AACAAAAGTTAACCCATTTT+AGG - tig0040220:13930-13949 None:intergenic 25.0%
!!! ATTTTGATGTAGATTGTTGT+GGG + tig0040220:13983-14002 Msa1459380:intron 25.0%
! GTAGTAATTAAATCTCTTAG+TGG + tig0040220:14058-14077 Msa1459380:intron 25.0%
! ATAAACTGATTATCCAAACA+GGG - tig0040220:14107-14126 None:intergenic 25.0%
! AATAAACTGATTATCCAAAC+AGG - tig0040220:14108-14127 None:intergenic 25.0%
! AAACAACTGAACACAATTAA+GGG - tig0040220:14358-14377 None:intergenic 25.0%
! AAAACAACTGAACACAATTA+AGG - tig0040220:14359-14378 None:intergenic 25.0%
!! GAATTTTATAGTCATTTGCA+AGG + tig0040220:14436-14455 Msa1459380:intron 25.0%
!!! TATCCAGATATGTTTTTGAT+GGG + tig0040220:14608-14627 Msa1459380:intron 25.0%
! GAGATATCTTGTATTAAATC+AGG + tig0040220:14862-14881 Msa1459380:intron 25.0%
!!! AAAAGACTTTTAAGACTCAT+GGG + tig0040220:15115-15134 Msa1459380:CDS 25.0%
! GCTATTTAAGAAAACCTAAA+GGG - tig0040220:15564-15583 None:intergenic 25.0%
!! TGCTATTTAAGAAAACCTAA+AGG - tig0040220:15565-15584 None:intergenic 25.0%
! CTTTGAATAAAAATTAAGGG+AGG - tig0040220:15622-15641 None:intergenic 25.0%
!! GTCGCTTTGAATAAAAATTA+AGG - tig0040220:15626-15645 None:intergenic 25.0%
! AGTGTTTAGTTAAAAAGTAG+AGG + tig0040220:16142-16161 Msa1459380:intron 25.0%
! GTGTTTAGTTAAAAAGTAGA+GGG + tig0040220:16143-16162 Msa1459380:intron 25.0%
!! ATATCTCATGTTTCAGATTT+TGG + tig0040220:16583-16602 Msa1459380:intron 25.0%
!! ATTGACTTATGTATACTTTC+TGG + tig0040220:16635-16654 Msa1459380:CDS 25.0%
! CATTAAAGATCCAAATATAC+AGG - tig0040220:16996-17015 None:intergenic 25.0%
! TGTAAAATGTGTCATATAAG+TGG - tig0040220:17025-17044 None:intergenic 25.0%
!! ATGAAGTACTTAATCTTAAG+TGG + tig0040220:17206-17225 Msa1459380:CDS 25.0%
! ATAGTTATTACTTCTTCATC+TGG - tig0040220:17238-17257 None:intergenic 25.0%
!!! AATTTTTTGGCAAGATAATC+AGG + tig0040220:17340-17359 Msa1459380:intron 25.0%
!!! ACATTTCTAGTAAATGAGAA+TGG + tig0040220:17394-17413 Msa1459380:CDS 25.0%
!!! CATTTCTAGTAAATGAGAAT+GGG + tig0040220:17395-17414 Msa1459380:CDS 25.0%
! GGCAATAGAAAAAATTAAAG+CGG + tig0040220:17535-17554 Msa1459380:intron 25.0%
! CTTAAAAAATGATTCCAATC+TGG - tig0040220:17665-17684 None:intergenic 25.0%
! TTTGAATGTTTAACACATAG+TGG - tig0040220:17757-17776 None:intergenic 25.0%
!! ACATTCAAAATTGTTGTTGA+AGG + tig0040220:17768-17787 Msa1459380:intron 25.0%
!! ATAATTCATGATCTAGTTTC+AGG - tig0040220:17885-17904 None:intergenic 25.0%
! AACATTATGAAAACTATGCA+AGG - tig0040220:17913-17932 None:intergenic 25.0%
! CATTATTCATGCATTTGATA+TGG + tig0040220:18064-18083 Msa1459380:intron 25.0%
! TTATTCATGCATTTGATATG+GGG + tig0040220:18066-18085 Msa1459380:intron 25.0%
! TAAAATAAAGGAACACAAAG+GGG - tig0040220:18252-18271 None:intergenic 25.0%
!!! TCAATTTTTTTTCTCAGATG+TGG - tig0040220:18305-18324 None:intergenic 25.0%
! TTCCTTTAGCATAAGTATAT+AGG + tig0040220:18791-18810 Msa1459380:intron 25.0%
!!! AAACTTTTAAGAAGTCTCAT+TGG + tig0040220:18841-18860 Msa1459380:intron 25.0%
! ATAAAGTAGAAATGAAAAGG+AGG - tig0040220:19003-19022 None:intergenic 25.0%
!! TTTTCTGTAATAGATTGAAC+AGG - tig0040220:19054-19073 None:intergenic 25.0%
!!! TATCAATTTGTTTTCATGGT+AGG - tig0040220:19169-19188 None:intergenic 25.0%
! AAAAAGAAACTAATCCTACA+AGG + tig0040220:19241-19260 Msa1459380:intron 25.0%
! AATTATCCTAATTACCTTGT+AGG - tig0040220:19258-19277 None:intergenic 25.0%
! AAAACAGTAACATATTATGC+AGG - tig0040220:19395-19414 None:intergenic 25.0%
!! TGCATAATATGTTACTGTTT+TGG + tig0040220:19394-19413 Msa1459380:intron 25.0%
AATTCTCATTCAAACAACGA+TGG + tig0040220:13643-13662 Msa1459380:exon 30.0%
ATTCTCATTCAAACAACGAT+GGG + tig0040220:13644-13663 Msa1459380:exon 30.0%
!! TTGTTCTCCTTCATTGATTT+GGG - tig0040220:13823-13842 None:intergenic 30.0%
! TTTGTTCTCCTTCATTGATT+TGG - tig0040220:13824-13843 None:intergenic 30.0%
ATTTACCAGTTTCTTGTAAG+TGG + tig0040220:13892-13911 Msa1459380:intron 30.0%
!! GATTTTGATGTAGATTGTTG+TGG + tig0040220:13982-14001 Msa1459380:intron 30.0%
TCCAAGATAGCTTATGAAAA+CGG - tig0040220:14218-14237 None:intergenic 30.0%
TTTCATAAGTTCTTCCAAAC+AGG + tig0040220:14281-14300 Msa1459380:intron 30.0%
CAAAACGACTTATTCTCATA+TGG - tig0040220:14553-14572 None:intergenic 30.0%
!! GTATCCAGATATGTTTTTGA+TGG + tig0040220:14607-14626 Msa1459380:intron 30.0%
AGAATCAAGAGCTGAAAAAA+CGG + tig0040220:14647-14666 Msa1459380:CDS 30.0%
!! CTGAAAAAACGGTATTTTTG+CGG + tig0040220:14658-14677 Msa1459380:intron 30.0%
!! TGAAAAAACGGTATTTTTGC+GGG + tig0040220:14659-14678 Msa1459380:intron 30.0%
!!! AATGGATTGAAACAAGGTTT+TGG + tig0040220:15029-15048 Msa1459380:intron 30.0%
!!! CAAAAGACTTTTAAGACTCA+TGG + tig0040220:15114-15133 Msa1459380:CDS 30.0%
!!! CATTTTAGTTTTCAAGAAGG+TGG - tig0040220:15307-15326 None:intergenic 30.0%
ATTTAAGAAAACCTAAAGGG+AGG - tig0040220:15561-15580 None:intergenic 30.0%
CTAACGATGTTACATAACAA+TGG - tig0040220:15657-15676 None:intergenic 30.0%
TAATATACCACAGTCTAGTA+TGG - tig0040220:15748-15767 None:intergenic 30.0%
TTTGATGAGATACGAAAAGT+AGG + tig0040220:15927-15946 Msa1459380:intron 30.0%
! TGCTATTTAAGAAGACCTTA+AGG + tig0040220:16173-16192 Msa1459380:intron 30.0%
GCTATTTAAGAAGACCTTAA+GGG + tig0040220:16174-16193 Msa1459380:intron 30.0%
ATTAGATGGCGAAGAAATTT+AGG - tig0040220:16449-16468 None:intergenic 30.0%
TAAATTTCTTCGCCATCTAA+TGG + tig0040220:16448-16467 Msa1459380:CDS 30.0%
TTCAAAGAAGATTCCAGTAA+TGG + tig0040220:16478-16497 Msa1459380:CDS 30.0%
!! ATACATTTTGAAAGCAGTCA+AGG - tig0040220:16530-16549 None:intergenic 30.0%
TTGACTGCTTTCAAAATGTA+TGG + tig0040220:16529-16548 Msa1459380:intron 30.0%
TGACTGCTTTCAAAATGTAT+GGG + tig0040220:16530-16549 Msa1459380:intron 30.0%
TAAGTCAATAAATTGGTCCA+TGG - tig0040220:16624-16643 None:intergenic 30.0%
! TGTTTAGAGTTGAGTTTCAT+TGG + tig0040220:17459-17478 Msa1459380:intron 30.0%
! GTTTAGAGTTGAGTTTCATT+GGG + tig0040220:17460-17479 Msa1459380:intron 30.0%
GGTATTTCAGAAAGAAAGTT+AGG - tig0040220:17644-17663 None:intergenic 30.0%
!! TTCTTTCTGAAATACCAGAT+TGG + tig0040220:17648-17667 Msa1459380:intron 30.0%
! AACATTTATGGTCAGACTTT+TGG + tig0040220:17811-17830 Msa1459380:intron 30.0%
AAGAAAAACTAAATCACAGC+AGG - tig0040220:17837-17856 None:intergenic 30.0%
TAGTTTCAGGAAGACAAATA+CGG - tig0040220:17872-17891 None:intergenic 30.0%
CAATTTAATGCGACTTATCA+TGG - tig0040220:17995-18014 None:intergenic 30.0%
AACGTTAAGACAAACATTGT+TGG + tig0040220:18116-18135 Msa1459380:intron 30.0%
ACGTTAAGACAAACATTGTT+GGG + tig0040220:18117-18136 Msa1459380:intron 30.0%
!! ATTGAAAACACTGATTTGTG+TGG + tig0040220:18155-18174 Msa1459380:intron 30.0%
ATTTGTTCACTAACTGGATT+TGG + tig0040220:18208-18227 Msa1459380:intron 30.0%
AAAATAAAGGAACACAAAGG+GGG - tig0040220:18251-18270 None:intergenic 30.0%
!!! TTTTTTTTCTCAGATGTGGA+AGG - tig0040220:18301-18320 None:intergenic 30.0%
! AAAATTGAAGTACCAGAAAC+AGG + tig0040220:18317-18336 Msa1459380:intron 30.0%
TTGGTAAAAATTCCTGTTTC+TGG - tig0040220:18332-18351 None:intergenic 30.0%
! ATTTTGCTACACTTAATGAC+AGG + tig0040220:18387-18406 Msa1459380:intron 30.0%
TTGGAACACAAACTATAGAT+CGG - tig0040220:18520-18539 None:intergenic 30.0%
AGACAAATTATGCATTAGCA+TGG - tig0040220:18620-18639 None:intergenic 30.0%
AGCCTATATACTTATGCTAA+AGG - tig0040220:18796-18815 None:intergenic 30.0%
TTGTTTCAAGCCTAATCAAT+GGG - tig0040220:18889-18908 None:intergenic 30.0%
! GAAACAAGTTTCCATTGATT+AGG + tig0040220:18902-18921 Msa1459380:intron 30.0%
! GTTTGGTATGATTGATGATT+TGG + tig0040220:19085-19104 Msa1459380:intron 30.0%
ACTAATCCTACAAGGTAATT+AGG + tig0040220:19249-19268 Msa1459380:intron 30.0%
!!! ATGTACTCTTTTTTCTTGAC+AGG + tig0040220:19439-19458 Msa1459380:intron 30.0%
TGAATGATGCTAAAGCTAAA+GGG + tig0040220:19471-19490 Msa1459380:CDS 30.0%
CGGTAAGAAGAAAAAATAGT+TGG + tig0040220:19520-19539 Msa1459380:exon 30.0%
AGTTGGATTTGTATCTTAGA+TGG + tig0040220:19537-19556 Msa1459380:exon 30.0%
GTTGGATTTGTATCTTAGAT+GGG + tig0040220:19538-19557 Msa1459380:exon 30.0%
GTTTGAATGAGAATTTGCAG+AGG - tig0040220:13638-13657 None:intergenic 35.0%
TCAAACAACGATGGGTATTA+AGG + tig0040220:13652-13671 Msa1459380:exon 35.0%
TAATGCTCCCAAATCAATGA+AGG + tig0040220:13813-13832 Msa1459380:CDS 35.0%
TAGCATCAACAGCAATCTTA+CGG - tig0040220:13864-13883 None:intergenic 35.0%
TGAAACCACTTACAAGAAAC+TGG - tig0040220:13900-13919 None:intergenic 35.0%
! GAAATGTTGACTAATGAAGC+TGG + tig0040220:14019-14038 Msa1459380:CDS 35.0%
AGATAAGCTTAATCCCTGTT+TGG + tig0040220:14091-14110 Msa1459380:intron 35.0%
TCAAATAACCTGATCCAAAC+AGG + tig0040220:14332-14351 Msa1459380:intron 35.0%
! GCATTGGTAAAAATCGACAA+GGG - tig0040220:14585-14604 None:intergenic 35.0%
!! AGCATTGGTAAAAATCGACA+AGG - tig0040220:14586-14605 None:intergenic 35.0%
CTTCCCATCAAAAACATATC+TGG - tig0040220:14614-14633 None:intergenic 35.0%
!! GAAAAAACGGTATTTTTGCG+GGG + tig0040220:14660-14679 Msa1459380:intron 35.0%
! GAGGTATATGCATAGTTTGT+TGG + tig0040220:14814-14833 Msa1459380:intron 35.0%
AAATCAGGATATTCATCCCT+TGG + tig0040220:14877-14896 Msa1459380:intron 35.0%
! CTGATCTTTGTTGTCATTTC+AGG + tig0040220:14900-14919 Msa1459380:intron 35.0%
TGTACAATGAGTTCACCATT+TGG + tig0040220:15187-15206 Msa1459380:intron 35.0%
! AATTTGAAGCCTTAGCCAAA+TGG - tig0040220:15205-15224 None:intergenic 35.0%
! AATCCTTTTCATACAGACCA+TGG + tig0040220:15346-15365 Msa1459380:intron 35.0%
TTTCCATGGTCTGTATGAAA+AGG - tig0040220:15352-15371 None:intergenic 35.0%
! TCCTTTTCAAACACACTTCA+TGG + tig0040220:15500-15519 Msa1459380:intron 35.0%
TCCATGAAGTGTGTTTGAAA+AGG - tig0040220:15504-15523 None:intergenic 35.0%
ACGATGTTACATAACAATGG+AGG - tig0040220:15654-15673 None:intergenic 35.0%
AAAATATCTCATGGAGTGTG+AGG - tig0040220:15713-15732 None:intergenic 35.0%
! ACTCCATGAGATATTTTCTC+TGG + tig0040220:15716-15735 Msa1459380:intron 35.0%
CAACCAGAGAAAATATCTCA+TGG - tig0040220:15722-15741 None:intergenic 35.0%
! GAAGGAAATAGCTTTTCACT+TGG + tig0040220:15868-15887 Msa1459380:intron 35.0%
TTGGAGATAGACATTCGTTT+AGG + tig0040220:15887-15906 Msa1459380:intron 35.0%
ATAGAAGGTAACAGGAAGAA+TGG - tig0040220:16023-16042 None:intergenic 35.0%
TTCTTCCTGTTACCTTCTAT+TGG + tig0040220:16023-16042 Msa1459380:intron 35.0%
GAATGAAAACCACCAATAGA+AGG - tig0040220:16038-16057 None:intergenic 35.0%
ATTTAAGAAGACCTTAAGGG+AGG + tig0040220:16177-16196 Msa1459380:intron 35.0%
TATTATACAGGTGTATGCTG+TGG + tig0040220:16388-16407 Msa1459380:intron 35.0%
TTGAACTAGGATCCATTAGA+TGG - tig0040220:16463-16482 None:intergenic 35.0%
ACTGGAATCTTCTTTGAACT+AGG - tig0040220:16476-16495 None:intergenic 35.0%
AATGGAATTTGACGTTGCAA+AGG + tig0040220:16496-16515 Msa1459380:CDS 35.0%
TTGAAAGCAGTCAAGGATAA+CGG - tig0040220:16523-16542 None:intergenic 35.0%
! TCTCATGTTTCAGATTTTGG+AGG + tig0040220:16586-16605 Msa1459380:intron 35.0%
TAATAATCAATGTGTGCCAC+AGG + tig0040220:16780-16799 Msa1459380:intron 35.0%
!!! TTTTTTCAATAGAGCCGTGT+TGG - tig0040220:16839-16858 None:intergenic 35.0%
CGGCTCTATTGAAAAAATAC+TGG + tig0040220:16842-16861 Msa1459380:CDS 35.0%
TGGAAAACATAAGCAAAGAG+AGG + tig0040220:16862-16881 Msa1459380:CDS 35.0%
!!! TTTTCAAGTGCATGCAATAG+AGG + tig0040220:16917-16936 Msa1459380:intron 35.0%
TGCATTACGAATCAGATATC+TGG + tig0040220:16970-16989 Msa1459380:intron 35.0%
AGATATCTGGCCTGTATATT+TGG + tig0040220:16983-17002 Msa1459380:intron 35.0%
GTTATTACTTCTTCATCTGG+AGG - tig0040220:17235-17254 None:intergenic 35.0%
AGTATTCTTTCAAAGGGACA+AGG + tig0040220:17275-17294 Msa1459380:intron 35.0%
TTGCATGTTGTCTTTCTTAC+AGG + tig0040220:17363-17382 Msa1459380:intron 35.0%
TGCATGTTGTCTTTCTTACA+GGG + tig0040220:17364-17383 Msa1459380:intron 35.0%
ATCCATCAGTACCTATCAAA+CGG + tig0040220:17695-17714 Msa1459380:CDS 35.0%
GAATGTTTAACACATAGTGG+AGG - tig0040220:17754-17773 None:intergenic 35.0%
ATTCTCCACCAGAACATTTA+TGG + tig0040220:17799-17818 Msa1459380:intron 35.0%
AAGTCTGACCATAAATGTTC+TGG - tig0040220:17810-17829 None:intergenic 35.0%
AAGAGGATGAAAATTAAGCG+AGG - tig0040220:17937-17956 None:intergenic 35.0%
CATCGATATGACATCATAAG+AGG - tig0040220:17954-17973 None:intergenic 35.0%
!!! GCATTTTAAAGTCCGAGATA+TGG + tig0040220:18036-18055 Msa1459380:intron 35.0%
! GTGAACAAATGATGGGATAA+AGG - tig0040220:18198-18217 None:intergenic 35.0%
CCAGTTAGTGAACAAATGAT+GGG - tig0040220:18205-18224 None:intergenic 35.0%
TCCAGTTAGTGAACAAATGA+TGG - tig0040220:18206-18225 None:intergenic 35.0%
AAATAAAGGAACACAAAGGG+GGG - tig0040220:18250-18269 None:intergenic 35.0%
GACATCTTATGATCAATTGC+CGG - tig0040220:18442-18461 None:intergenic 35.0%
! TTAGCATGGATTGACATTGA+AGG - tig0040220:18606-18625 None:intergenic 35.0%
TAAAACTACATCAGGCCTTA+CGG + tig0040220:18688-18707 Msa1459380:intron 35.0%
!! TAACTCTGAAATGTTGTTCC+TGG + tig0040220:18757-18776 Msa1459380:intron 35.0%
AAAGGAACTAAAGTGAAACC+AGG - tig0040220:18778-18797 None:intergenic 35.0%
AGCATAAGTATATAGGCTTC+TGG + tig0040220:18798-18817 Msa1459380:intron 35.0%
! GAAACAAGTTCCCATTGATT+AGG + tig0040220:18876-18895 Msa1459380:intron 35.0%
CTTGTTTCAAGCCTAATCAA+TGG - tig0040220:18890-18909 None:intergenic 35.0%
! TGTTTGAGATTGAGGCTTAT+TGG - tig0040220:19030-19049 None:intergenic 35.0%
ATATGAGAAGTAATCTCCAG+TGG + tig0040220:19203-19222 Msa1459380:intron 35.0%
! TGAGTATCTAAAACTACCAC+TGG - tig0040220:19222-19241 None:intergenic 35.0%
AGGCTTCTTGTTAGAAGATA+TGG - tig0040220:19292-19311 None:intergenic 35.0%
!! TATCCGCGTGTATTTTGAAA+AGG - tig0040220:19328-19347 None:intergenic 35.0%
!!! TGTTACTGTTTTGGTTCTGT+AGG + tig0040220:19403-19422 Msa1459380:intron 35.0%
! AAAGAGTACATGTCAAACCA+TGG - tig0040220:19430-19449 None:intergenic 35.0%
!! TTAGCTTTAGCATCATTCAC+TGG - tig0040220:19470-19489 None:intergenic 35.0%
GTGAATGATGCTAAAGCTAA+AGG + tig0040220:19470-19489 Msa1459380:CDS 35.0%
AGGGAGTAACAAGAAAACTA+AGG + tig0040220:19490-19509 Msa1459380:CDS 35.0%
AGTAACAAGAAAACTAAGGC+CGG + tig0040220:19494-19513 Msa1459380:CDS 35.0%
TGACGGCAGAAAGATGAATA+AGG - tig0040220:13597-13616 None:intergenic 40.0%
TAATGTGAACTGGAGTGTGA+CGG - tig0040220:13614-13633 None:intergenic 40.0%
TTGCAGAGGATAATGTGAAC+TGG - tig0040220:13624-13643 None:intergenic 40.0%
! GGGTTTAACGAAGCTTTTAG+CGG + tig0040220:13789-13808 Msa1459380:intron 40.0%
TAGATTGTTGTGGGAAGAAG+TGG + tig0040220:13992-14011 Msa1459380:intron 40.0%
ATGAAGCTGGTGAAGTTACT+AGG + tig0040220:14032-14051 Msa1459380:intron 40.0%
!! GCCGTTTTCATAAGCTATCT+TGG + tig0040220:14214-14233 Msa1459380:intron 40.0%
AACACAATTAAGGGCCTGTT+TGG - tig0040220:14349-14368 None:intergenic 40.0%
ATTTGCAAGGAATGTTTGCG+CGG + tig0040220:14449-14468 Msa1459380:intron 40.0%
! ACAATCAGACTTCTAGAAGC+CGG + tig0040220:14472-14491 Msa1459380:CDS 40.0%
ACATATCTGGATACGAGCAT+TGG - tig0040220:14601-14620 None:intergenic 40.0%
AGCTCTTGATTCTTCATCTC+CGG - tig0040220:14640-14659 None:intergenic 40.0%
! TTGTTGGCGACTTTTCTATG+TGG + tig0040220:14830-14849 Msa1459380:intron 40.0%
TGACAACAAAGATCAGCCAA+GGG - tig0040220:14896-14915 None:intergenic 40.0%
ATGACAACAAAGATCAGCCA+AGG - tig0040220:14897-14916 None:intergenic 40.0%
ATTCAGTAAACGGACAGTGA+AGG + tig0040220:14948-14967 Msa1459380:CDS 40.0%
ATGAGTTCACCATTTGGCTA+AGG + tig0040220:15193-15212 Msa1459380:intron 40.0%
TCTTCCACTCTTTGCAAAAC+TGG + tig0040220:15406-15425 Msa1459380:intron 40.0%
CACTCTTTGCAAAACTGGAA+CGG + tig0040220:15411-15430 Msa1459380:intron 40.0%
AATTACACTCACCTCCCTTT+AGG + tig0040220:15547-15566 Msa1459380:intron 40.0%
! GTTGATTCCATACTAGACTG+TGG + tig0040220:15738-15757 Msa1459380:intron 40.0%
CACAATAATTCGCCATTGCT+TGG - tig0040220:15819-15838 None:intergenic 40.0%
CAATGGCGAATTATTGTGAC+CGG + tig0040220:15821-15840 Msa1459380:intron 40.0%
AATTATTGTGACCGGTGGTA+TGG + tig0040220:15829-15848 Msa1459380:intron 40.0%
! GGTGTCGTATGAACAAATGA+AGG + tig0040220:15850-15869 Msa1459380:intron 40.0%
GAGATAGACATTCGTTTAGG+TGG + tig0040220:15890-15909 Msa1459380:intron 40.0%
TTCCTGTTACCTTCTATTGG+TGG + tig0040220:16026-16045 Msa1459380:intron 40.0%
AACCACCAATAGAAGGTAAC+AGG - tig0040220:16031-16050 None:intergenic 40.0%
! GTGGTTTTCATTCGCAATGT+GGG + tig0040220:16045-16064 Msa1459380:intron 40.0%
! TTTTCATTCGCAATGTGGGT+GGG + tig0040220:16049-16068 Msa1459380:intron 40.0%
! GTGCTTGAGAGTATAACCAA+TGG + tig0040220:16077-16096 Msa1459380:intron 40.0%
! TGAGAGTATAACCAATGGTG+CGG + tig0040220:16082-16101 Msa1459380:intron 40.0%
AATTACACTCACCTCCCTTA+AGG - tig0040220:16191-16210 None:intergenic 40.0%
GACATGGATTCCTTAACGTT+TGG + tig0040220:16419-16438 Msa1459380:CDS 40.0%
TTTAGGAGCTCCAAACGTTA+AGG - tig0040220:16432-16451 None:intergenic 40.0%
GCAACGTCAAATTCCATTAC+TGG - tig0040220:16494-16513 None:intergenic 40.0%
GATTACTGTGACAACATTCG+AGG + tig0040220:16662-16681 Msa1459380:CDS 40.0%
!! TTTGTCCCGCTTTTATCCAA+CGG + tig0040220:16690-16709 Msa1459380:intron 40.0%
!! TTCAAGTTTACCACCGATTC+AGG + tig0040220:17110-17129 Msa1459380:intron 40.0%
!! ACGACTTTTTAAAGAGCCAG+AGG + tig0040220:17171-17190 Msa1459380:CDS 40.0%
TCATCATCAGTTATGACCTC+TGG - tig0040220:17190-17209 None:intergenic 40.0%
GCATGTTGTCTTTCTTACAG+GGG + tig0040220:17365-17384 Msa1459380:intron 40.0%
! AGAATGGGTTCAACAGTGAT+AGG + tig0040220:17410-17429 Msa1459380:CDS 40.0%
! GAATGGGTTCAACAGTGATA+GGG + tig0040220:17411-17430 Msa1459380:CDS 40.0%
GCAAAGAACAAGTCATCACA+AGG + tig0040220:17557-17576 Msa1459380:CDS 40.0%
GCACGACAAGACAATAGAAA+AGG - tig0040220:17622-17641 None:intergenic 40.0%
!! TTCCGTTTGATAGGTACTGA+TGG - tig0040220:17700-17719 None:intergenic 40.0%
ATCAGTACCTATCAAACGGA+AGG + tig0040220:17699-17718 Msa1459380:CDS 40.0%
GTACATACCTTCCGTTTGAT+AGG - tig0040220:17709-17728 None:intergenic 40.0%
! CAAAATTGTTGTTGAAGGCC+TGG + tig0040220:17773-17792 Msa1459380:intron 40.0%
TCTGACCATAAATGTTCTGG+TGG - tig0040220:17807-17826 None:intergenic 40.0%
CCCATCATTTGTTCACTAAC+TGG + tig0040220:18202-18221 Msa1459380:intron 40.0%
CGTGCTTAGATCTTTCAAAC+CGG + tig0040220:18420-18439 Msa1459380:intron 40.0%
TGCGAATTTCTAACTGCTCA+AGG + tig0040220:18467-18486 Msa1459380:intron 40.0%
ATTGACATTGAAGGTTCACC+AGG - tig0040220:18597-18616 None:intergenic 40.0%
AGTCATCTCTGCCTAATCAA+TGG - tig0040220:18916-18935 None:intergenic 40.0%
ATTGATTAGGCAGAGATGAC+TGG + tig0040220:18915-18934 Msa1459380:intron 40.0%
! GAACAGGTTGTTTGAGATTG+AGG - tig0040220:19038-19057 None:intergenic 40.0%
! GAAAAGGCTGTTGCTTCATT+AGG - tig0040220:19312-19331 None:intergenic 40.0%
! CAGCCTTTTCAAAATACACG+CGG + tig0040220:19322-19341 Msa1459380:intron 40.0%
!!! TTTTTTCTTCTTACCGCCAC+CGG - tig0040220:19516-19535 None:intergenic 40.0%
AGTTCTTCCAAACAGGCTCA+CGG + tig0040220:14288-14307 Msa1459380:intron 45.0%
ATAAGTTCCGTGAGCCTGTT+TGG - tig0040220:14298-14317 None:intergenic 45.0%
ATTAAGGGCCTGTTTGGATC+AGG - tig0040220:14343-14362 None:intergenic 45.0%
! CAATCAGACTTCTAGAAGCC+GGG + tig0040220:14473-14492 Msa1459380:CDS 45.0%
!! GAATTACACTGGCTTCATCC+CGG - tig0040220:14494-14513 None:intergenic 45.0%
!! TGTTTTTGATGGGAAGCCAC+CGG + tig0040220:14618-14637 Msa1459380:CDS 45.0%
TCTTGATTCTTCATCTCCGG+TGG - tig0040220:14637-14656 None:intergenic 45.0%
GTCATTTCAGGCTGACAACA+AGG + tig0040220:14912-14931 Msa1459380:intron 45.0%
GCTAAGGCTTCAAATTCTGC+AGG + tig0040220:15209-15228 Msa1459380:intron 45.0%
TGCACTTTGCAAAGCTGGAA+AGG + tig0040220:15260-15279 Msa1459380:CDS 45.0%
! CGTTCCAGTTTTGCAAAGAG+TGG - tig0040220:15413-15432 None:intergenic 45.0%
GAGCTTAAAGCTCCAAGCAA+TGG + tig0040220:15804-15823 Msa1459380:intron 45.0%
TTCATACGACACCATACCAC+CGG - tig0040220:15843-15862 None:intergenic 45.0%
CGAAAAGTAGGTTTGCGAAG+AGG + tig0040220:15939-15958 Msa1459380:intron 45.0%
! GGTGGTTTTCATTCGCAATG+TGG + tig0040220:16044-16063 Msa1459380:intron 45.0%
! GTTTTCATTCGCAATGTGGG+TGG + tig0040220:16048-16067 Msa1459380:intron 45.0%
TTTCATTCGCAATGTGGGTG+GGG + tig0040220:16050-16069 Msa1459380:intron 45.0%
GACAATAATAGCCGCACCAT+TGG - tig0040220:16096-16115 None:intergenic 45.0%
!! TTGTCCCGCTTTTATCCAAC+GGG + tig0040220:16691-16710 Msa1459380:intron 45.0%
TAGCACCCGTTGGATAAAAG+CGG - tig0040220:16699-16718 None:intergenic 45.0%
TCAATGTGTGCCACAGGTAT+TGG + tig0040220:16786-16805 Msa1459380:intron 45.0%
CAATGTGTGCCACAGGTATT+GGG + tig0040220:16787-16806 Msa1459380:intron 45.0%
! AATGTGTGCCACAGGTATTG+GGG + tig0040220:16788-16807 Msa1459380:intron 45.0%
CAACAGTGATAGGGTGACAA+AGG + tig0040220:17420-17439 Msa1459380:CDS 45.0%
AGAACAAGTCATCACAAGGC+CGG + tig0040220:17561-17580 Msa1459380:CDS 45.0%
!! GGTACTGATGGATTTGCAGT+TGG - tig0040220:17688-17707 None:intergenic 45.0%
AGTGGAGGTGATAGATGTAG+TGG - tig0040220:17739-17758 None:intergenic 45.0%
!! ACACTGATTTGTGTGGCAAC+TGG + tig0040220:18162-18181 Msa1459380:intron 45.0%
GCAGTTAGAAATTCGCAGAG+AGG - tig0040220:18464-18483 None:intergenic 45.0%
TTCTAACTGCTCAAGGTCCA+TGG + tig0040220:18474-18493 Msa1459380:intron 45.0%
! TGCTCAAGGTCCATGGTTTT+TGG + tig0040220:18481-18500 Msa1459380:intron 45.0%
TATAGATCGGCATGCTCAAC+TGG - tig0040220:18507-18526 None:intergenic 45.0%
AAGCAGACACCTCTAGACAA+TGG - tig0040220:18553-18572 None:intergenic 45.0%
!! TTGTCTAGAGGTGTCTGCTT+TGG + tig0040220:18553-18572 Msa1459380:intron 45.0%
!!! GTTTTGGTTCTGTAGGTCCA+TGG + tig0040220:19410-19429 Msa1459380:intron 45.0%
AACAAGAAAACTAAGGCCGG+TGG + tig0040220:19497-19516 Msa1459380:CDS 45.0%
!!! TTCAATTTTTAATATTATAA+TGG + tig0040220:15011-15030 Msa1459380:intron 5.0%
! ACACTTTACAGGAGAGTGCG+CGG + tig0040220:13550-13569 Msa1459380:five_prime_UTR 50.0%
TGCAACGTCACCTCAACAAC+AGG - tig0040220:15145-15164 None:intergenic 50.0%
CATTGAGCCTCTGCTTCTGA+GGG - tig0040220:15237-15256 None:intergenic 50.0%
ACATTGAGCCTCTGCTTCTG+AGG - tig0040220:15238-15257 None:intergenic 50.0%
TGTGCTGCACTTTGCAAAGC+TGG + tig0040220:15255-15274 Msa1459380:CDS 50.0%
ATCTCATGGAGTGTGAGGCA+GGG - tig0040220:15708-15727 None:intergenic 50.0%
TATCTCATGGAGTGTGAGGC+AGG - tig0040220:15709-15728 None:intergenic 50.0%
GTTAACATGTGGGACGAGCT+TGG + tig0040220:15774-15793 Msa1459380:intron 50.0%
TGGCGAATTATTGTGACCGG+TGG + tig0040220:15824-15843 Msa1459380:intron 50.0%
! TGCTGTGGCTTCTGAAGACA+TGG + tig0040220:16403-16422 Msa1459380:CDS 50.0%
GGAGGAGCTAGATTTGACCA+TGG + tig0040220:16604-16623 Msa1459380:CDS 50.0%
AGCACCCGTTGGATAAAAGC+GGG - tig0040220:16698-16717 None:intergenic 50.0%
! GCTTTTATCCAACGGGTGCT+AGG + tig0040220:16698-16717 Msa1459380:intron 50.0%
!! ATGTGTGCCACAGGTATTGG+GGG + tig0040220:16789-16808 Msa1459380:intron 50.0%
CTGAAGCTCATACGCCAACA+CGG + tig0040220:16822-16841 Msa1459380:CDS 50.0%
!! TTACCACCGATTCAGGTACC+AGG + tig0040220:17117-17136 Msa1459380:intron 50.0%
CTGGTACCTGGTACCTGAAT+CGG - tig0040220:17126-17145 None:intergenic 50.0%
GGTACCAGGTACCAGATGAT+TGG + tig0040220:17131-17150 Msa1459380:intron 50.0%
! ACCAGATGATTGGCCGTATC+AGG + tig0040220:17141-17160 Msa1459380:CDS 50.0%
TCCTGATACGGCCAATCATC+TGG - tig0040220:17145-17164 None:intergenic 50.0%
! AGATGATTGGCCGTATCAGG+AGG + tig0040220:17144-17163 Msa1459380:CDS 50.0%
GTTCTGGTGGAGAATTTGCC+AGG - tig0040220:17794-17813 None:intergenic 50.0%
GCTCAACTGGCCAAAAACCA+TGG - tig0040220:18494-18513 None:intergenic 50.0%
GACACCTCTAGACAATGGCA+TGG - tig0040220:18548-18567 None:intergenic 50.0%
TGCCTGAAGCTGAATAGACC+TGG + tig0040220:18576-18595 Msa1459380:intron 50.0%
CACCAGGTCTATTCAGCTTC+AGG - tig0040220:18581-18600 None:intergenic 50.0%
AAGAAAACTAAGGCCGGTGG+CGG + tig0040220:19500-19519 Msa1459380:CDS 50.0%
! CACTTTACAGGAGAGTGCGC+GGG + tig0040220:13551-13570 Msa1459380:five_prime_UTR 55.0%
CAGTCTCTCAAAGAGAGCCG+AGG + tig0040220:14765-14784 Msa1459380:intron 55.0%
TAGAGCTTCCGTCAAACCCG+CGG - tig0040220:14794-14813 None:intergenic 55.0%
! GGGTTTGACGGAAGCTCTAG+AGG + tig0040220:14795-14814 Msa1459380:CDS 55.0%
!! CATGGGAGTGCCTGTTGTTG+AGG + tig0040220:15132-15151 Msa1459380:CDS 55.0%
TGTGAGGCAGGGGAAAATGG+AGG - tig0040220:15697-15716 None:intergenic 55.0%
GAGTGTGAGGCAGGGGAAAA+TGG - tig0040220:15700-15719 None:intergenic 55.0%
TCTCATGGAGTGTGAGGCAG+GGG - tig0040220:15707-15726 None:intergenic 55.0%
AGCTTGAACCTAGCACCCGT+TGG - tig0040220:16709-16728 None:intergenic 55.0%
!! TGTGTGCCACAGGTATTGGG+GGG + tig0040220:16790-16809 Msa1459380:intron 55.0%
TGTCATCCCCCCAATACCTG+TGG - tig0040220:16799-16818 None:intergenic 55.0%
GTACCTGGTACCTGAATCGG+TGG - tig0040220:17123-17142 None:intergenic 55.0%
ACGGCCAATCATCTGGTACC+TGG - tig0040220:17138-17157 None:intergenic 55.0%
AGTCGTCGAGCCTCCTGATA+CGG - tig0040220:17157-17176 None:intergenic 55.0%
CTTACGGTGCTCGACTGCTA+GGG + tig0040220:18704-18723 Msa1459380:intron 55.0%
AAAGAGAGCCGAGGCTACCG+CGG + tig0040220:14774-14793 Msa1459380:CDS 60.0%
! CCTAGCAGTCGAGCACCGTA+AGG - tig0040220:18706-18725 None:intergenic 60.0%
CCTTACGGTGCTCGACTGCT+AGG + tig0040220:18703-18722 Msa1459380:intron 60.0%
AAGAGAGCCGAGGCTACCGC+GGG + tig0040220:14775-14794 Msa1459380:CDS 65.0%
CGTCAAACCCGCGGTAGCCT+CGG - tig0040220:14785-14804 None:intergenic 65.0%
CGAGGCTACCGCGGGTTTGA+CGG + tig0040220:14783-14802 Msa1459380:CDS 65.0%
GCAGGCACCCTCAGAAGCAG+AGG + tig0040220:15227-15246 Msa1459380:intron 65.0%
Chromosome Type Strat End Strand Name
tig0040220 gene 13543 19577 13543 ID=Msa1459380;Name=Msa1459380
tig0040220 mRNA 13543 19577 13543 ID=Msa1459380-mRNA-1;Parent=Msa1459380;Name=Msa1459380-mRNA-1;_AED=0.22;_eAED=0.22;_QI=119|0.87|0.82|1|1|1|17|39|383
tig0040220 exon 13543 13673 13543 ID=Msa1459380-mRNA-1:exon:22223;Parent=Msa1459380-mRNA-1
tig0040220 exon 13790 13906 13790 ID=Msa1459380-mRNA-1:exon:22224;Parent=Msa1459380-mRNA-1
tig0040220 exon 13995 14040 13995 ID=Msa1459380-mRNA-1:exon:22225;Parent=Msa1459380-mRNA-1
tig0040220 exon 14458 14506 14458 ID=Msa1459380-mRNA-1:exon:22226;Parent=Msa1459380-mRNA-1
tig0040220 exon 14615 14668 14615 ID=Msa1459380-mRNA-1:exon:22227;Parent=Msa1459380-mRNA-1
tig0040220 exon 14768 14816 14768 ID=Msa1459380-mRNA-1:exon:22228;Parent=Msa1459380-mRNA-1
tig0040220 exon 14922 14969 14922 ID=Msa1459380-mRNA-1:exon:22229;Parent=Msa1459380-mRNA-1
tig0040220 exon 15088 15153 15088 ID=Msa1459380-mRNA-1:exon:22230;Parent=Msa1459380-mRNA-1
tig0040220 exon 15231 15302 15231 ID=Msa1459380-mRNA-1:exon:22231;Parent=Msa1459380-mRNA-1
tig0040220 exon 16398 16517 16398 ID=Msa1459380-mRNA-1:exon:22232;Parent=Msa1459380-mRNA-1
tig0040220 exon 16599 16683 16599 ID=Msa1459380-mRNA-1:exon:22233;Parent=Msa1459380-mRNA-1
tig0040220 exon 16802 16883 16802 ID=Msa1459380-mRNA-1:exon:22234;Parent=Msa1459380-mRNA-1
tig0040220 exon 17132 17246 17132 ID=Msa1459380-mRNA-1:exon:22235;Parent=Msa1459380-mRNA-1
tig0040220 exon 17385 17441 17385 ID=Msa1459380-mRNA-1:exon:22236;Parent=Msa1459380-mRNA-1
tig0040220 exon 17536 17582 17536 ID=Msa1459380-mRNA-1:exon:22237;Parent=Msa1459380-mRNA-1
tig0040220 exon 17666 17720 17666 ID=Msa1459380-mRNA-1:exon:22238;Parent=Msa1459380-mRNA-1
tig0040220 exon 19461 19577 19461 ID=Msa1459380-mRNA-1:exon:22239;Parent=Msa1459380-mRNA-1
tig0040220 five_prime_UTR 13543 13661 13543 ID=Msa1459380-mRNA-1:five_prime_utr;Parent=Msa1459380-mRNA-1
tig0040220 CDS 13662 13673 13662 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 13790 13906 13790 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 13995 14040 13995 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 14458 14506 14458 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 14615 14668 14615 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 14768 14816 14768 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 14922 14969 14922 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 15088 15153 15088 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 15231 15302 15231 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 16398 16517 16398 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 16599 16683 16599 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 16802 16883 16802 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 17132 17246 17132 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 17385 17441 17385 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 17536 17582 17536 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 17666 17720 17666 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 CDS 19461 19538 19461 ID=Msa1459380-mRNA-1:cds;Parent=Msa1459380-mRNA-1
tig0040220 three_prime_UTR 19539 19577 19539 ID=Msa1459380-mRNA-1:three_prime_utr;Parent=Msa1459380-mRNA-1
Gene Sequence

>Msa1459380

ATGGGTATTAAGGGTTTAACGAAGCTTTTAGCGGATAATGCTCCCAAATCAATGAAGGAGAACAAATTCGAATCTTACTTTGGCCGTAAGATTGCTGTTGATGCTAGTATGAGCATTTACCAGTTTCTTATTGTTGTGGGAAGAAGTGGAACTGAAATGTTGACTAATGAAGCTGGAATGTTTGCGCGGACAATCAGACTTCTAGAAGCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCGGAGATGAAGAATCAAGAGCTGAAAAAACGTCTCTCAAAGAGAGCCGAGGCTACCGCGGGTTTGACGGAAGCTCTAGAGGCTGACAACAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACAAAGCAACATAATGACGACTGCAAAAGACTTTTAAGACTCATGGGAGTGCCTGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAATGTGCTGCACTTTGCAAAGCTGGAAAGGCAAGTTCAAATCTGCTGTGTGTGTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGTTCAAAGAAGATTCCAGTAATGGAATTTGACGTTGCAAAGATTTTGGAGGAGCTAGATTTGACCATGGACCAATTTATTGACTTATGTATACTTTCTGGATGTGATTACTGTGACAACATTCGAGGTATTGGGGGGATGACAGCTCTGAAGCTCATACGCCAACACGGCTCTATTGAAAAAATACTGGAAAACATAAGCAAAGAGAGGTACCAGGTACCAGATGATTGGCCGTATCAGGAGGCTCGACGACTTTTTAAAGAGCCAGAGGTCATAACTGATGATGAAGTACTTAATCTTAAGTGGTCTCCTCCAGATGAAGAAGGGTTAATAACATTTCTAGTAAATGAGAATGGGTTCAACAGTGATAGGGTGACAAAGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACTGCAAATCCATCAGTACCTATCAAACGGAAGGAAACTCCAGTGAATGATGCTAAAGCTAAAGGGAGTAACAAGAAAACTAAGGCCGGTGGCGGTAAGAAGAAAAAATAG

Protein sequence

>Msa1459380

MGIKGLTKLLADNAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKASSNLLCVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVITDDEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKETPVNDAKAKGSNKKTKAGGGKKKK*