Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126090 | XP_024637191.1 | 96.667 | 90 | 3 | 0 | 53 | 142 | 17 | 106 | 1.35e-58 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126090 | sp|Q9T096|YIPL6_ARATH | 70.455 | 88 | 26 | 0 | 53 | 140 | 17 | 104 | 4.89e-44 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126090 | A0A396JQD0 | 96.667 | 90 | 3 | 0 | 53 | 142 | 17 | 106 | 6.47e-59 | 187 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0126090 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031050 | Msa0126090 | 0.805613 | 1.226899e-49 | -8.615850e-47 |
| Msa0078430 | Msa0126090 | 0.839614 | 1.425894e-57 | -8.615850e-47 |
| Msa0126090 | Msa0139720 | -0.800244 | 1.578412e-48 | -8.615850e-47 |
| Msa0126090 | Msa0171020 | 0.892873 | 1.061816e-74 | -8.615850e-47 |
| Msa0126090 | Msa1079730 | -0.824513 | 7.748189e-54 | -8.615850e-47 |
| Msa0126090 | Msa1132560 | -0.801940 | 7.102780e-49 | -8.615850e-47 |
| Msa0126090 | Msa1168040 | -0.813697 | 2.245313e-51 | -8.615850e-47 |
| Msa0126090 | Msa1187520 | 0.827101 | 1.884455e-54 | -8.615850e-47 |
| Msa0126090 | Msa1282920 | 0.825643 | 4.191291e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126090 | MtrunA17_Chr1g0188931 | 96.667 | 90 | 3 | 0 | 53 | 142 | 17 | 106 | 1.25e-62 | 187 |
| Msa0126090 | MtrunA17_Chr3g0127211 | 76.404 | 89 | 21 | 0 | 53 | 141 | 17 | 105 | 1.37e-47 | 149 |
| Msa0126090 | MtrunA17_Chr8g0346501 | 68.605 | 86 | 27 | 0 | 53 | 138 | 17 | 102 | 1.51e-40 | 131 |
| Msa0126090 | MtrunA17_Chr2g0316921 | 50.000 | 86 | 43 | 0 | 53 | 138 | 21 | 106 | 7.74e-31 | 107 |
| Msa0126090 | MtrunA17_Chr8g0360291 | 46.591 | 88 | 47 | 0 | 53 | 140 | 21 | 108 | 2.14e-28 | 101 |
| Msa0126090 | MtrunA17_Chr3g0113291 | 48.810 | 84 | 43 | 0 | 54 | 137 | 45 | 128 | 3.46e-28 | 101 |
| Msa0126090 | MtrunA17_Chr7g0242231 | 50.000 | 86 | 43 | 0 | 53 | 138 | 21 | 106 | 1.29e-26 | 96.7 |
| Msa0126090 | MtrunA17_Chr5g0436971 | 46.988 | 83 | 44 | 0 | 55 | 137 | 23 | 105 | 1.92e-26 | 96.3 |
| Msa0126090 | MtrunA17_Chr1g0188951 | 65.079 | 63 | 22 | 0 | 80 | 142 | 1 | 63 | 2.41e-26 | 94.0 |
| Msa0126090 | MtrunA17_Chr4g0046851 | 45.783 | 83 | 45 | 0 | 56 | 138 | 24 | 106 | 2.72e-26 | 95.9 |
| Msa0126090 | MtrunA17_Chr2g0316891 | 47.619 | 63 | 33 | 0 | 76 | 138 | 42 | 104 | 3.34e-20 | 80.5 |
| Msa0126090 | MtrunA17_Chr1g0188961 | 81.081 | 37 | 6 | 1 | 23 | 59 | 3 | 38 | 7.07e-14 | 62.4 |
| Msa0126090 | MtrunA17_Chr1g0188941 | 78.788 | 33 | 7 | 0 | 19 | 51 | 67 | 99 | 1.44e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126090 | AT4G27745.2 | 70.455 | 88 | 26 | 0 | 53 | 140 | 17 | 104 | 4.97e-45 | 143 |
| Msa0126090 | AT4G27745.3 | 70.455 | 88 | 26 | 0 | 53 | 140 | 17 | 104 | 4.97e-45 | 143 |
| Msa0126090 | AT4G27745.1 | 70.455 | 88 | 26 | 0 | 53 | 140 | 17 | 104 | 4.97e-45 | 143 |
| Msa0126090 | AT4G27745.4 | 70.455 | 88 | 26 | 0 | 53 | 140 | 17 | 104 | 4.97e-45 | 143 |
| Msa0126090 | AT5G53940.1 | 45.455 | 88 | 48 | 0 | 53 | 140 | 21 | 108 | 7.49e-30 | 105 |
| Msa0126090 | AT3G11230.1 | 50.000 | 84 | 42 | 0 | 54 | 137 | 22 | 105 | 9.88e-28 | 100 |
| Msa0126090 | AT3G11230.4 | 50.617 | 81 | 40 | 0 | 54 | 134 | 22 | 102 | 3.96e-27 | 97.8 |
| Msa0126090 | AT3G11230.2 | 50.000 | 84 | 42 | 0 | 54 | 137 | 55 | 138 | 4.19e-27 | 99.4 |
| Msa0126090 | AT3G08990.2 | 48.235 | 85 | 44 | 0 | 54 | 138 | 22 | 106 | 4.54e-27 | 98.2 |
| Msa0126090 | AT3G08990.1 | 48.235 | 85 | 44 | 0 | 54 | 138 | 22 | 106 | 4.54e-27 | 98.2 |
| Msa0126090 | AT3G08990.3 | 48.235 | 85 | 44 | 0 | 54 | 138 | 22 | 106 | 4.54e-27 | 98.2 |
| Msa0126090 | AT4G27740.1 | 45.977 | 87 | 47 | 0 | 53 | 139 | 17 | 103 | 4.73e-27 | 97.4 |
| Msa0126090 | AT3G11230.3 | 50.000 | 82 | 41 | 0 | 53 | 134 | 54 | 135 | 1.48e-26 | 97.4 |
| Msa0126090 | AT2G40110.1 | 47.619 | 84 | 44 | 0 | 54 | 137 | 22 | 105 | 6.35e-26 | 95.5 |
| Msa0126090 | AT3G55890.4 | 47.619 | 84 | 44 | 0 | 54 | 137 | 22 | 105 | 8.45e-26 | 94.7 |
| Msa0126090 | AT3G55890.1 | 47.619 | 84 | 44 | 0 | 54 | 137 | 22 | 105 | 8.45e-26 | 94.7 |
| Msa0126090 | AT3G55890.3 | 47.500 | 80 | 42 | 0 | 54 | 133 | 22 | 101 | 3.16e-25 | 92.8 |
| Msa0126090 | AT3G55890.2 | 47.500 | 80 | 42 | 0 | 54 | 133 | 22 | 101 | 3.16e-25 | 92.8 |
| Msa0126090 | AT2G40110.2 | 46.341 | 82 | 44 | 0 | 53 | 134 | 21 | 102 | 5.02e-25 | 92.4 |
| Msa0126090 | AT2G40110.4 | 42.857 | 63 | 36 | 0 | 53 | 115 | 21 | 83 | 1.57e-16 | 70.1 |
| Msa0126090 | AT2G40110.3 | 42.857 | 63 | 36 | 0 | 53 | 115 | 21 | 83 | 1.57e-16 | 70.1 |
Find 32 sgRNAs with CRISPR-Local
Find 448 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGAAGTCTAAAATTGTT+AGG | 0.250834 | 1_3:-55006481 | Msa0126090:CDS |
| ATGAATTCCATGTCTACTTT+TGG | 0.252538 | 1_3:+55006620 | None:intergenic |
| ATATAATTTCAGGGAAGAAA+TGG | 0.360217 | 1_3:-55006686 | Msa0126090:intron |
| GAACTAGGTTGTGATGAAAT+TGG | 0.383740 | 1_3:-55013442 | Msa0126090:CDS |
| CATGCAATGAATGTCACAAT+AGG | 0.409276 | 1_3:-55006644 | Msa0126090:CDS |
| TGAGAAGTCTAAAATTGTTA+GGG | 0.424108 | 1_3:-55006480 | Msa0126090:CDS |
| TACGTTGTGATGACATCTTT+AGG | 0.433584 | 1_3:+55010782 | None:intergenic |
| AGTAAACATCAGCAATTGTA+TGG | 0.440083 | 1_3:+55006588 | None:intergenic |
| TTGAAATAATATCATCATGA+AGG | 0.440185 | 1_3:+55007149 | None:intergenic |
| CCTAGTTCTGCATTGTCACT+TGG | 0.477409 | 1_3:+55013457 | None:intergenic |
| ATGCAATGAATGTCACAATA+GGG | 0.486721 | 1_3:-55006643 | Msa0126090:CDS |
| TGAAATAATATCATCATGAA+GGG | 0.490512 | 1_3:+55007150 | None:intergenic |
| CCAAGTGACAATGCAGAACT+AGG | 0.499137 | 1_3:-55013457 | Msa0126090:CDS |
| GAAAGCGTGTAGAGAGAGCT+TGG | 0.508767 | 1_3:-55010811 | Msa0126090:CDS |
| TGTGACTGCAATCAAGTGCT+TGG | 0.515226 | 1_3:-55006563 | Msa0126090:CDS |
| TACTACAAATGTACGGTACC+AGG | 0.527593 | 1_3:-55010845 | Msa0126090:CDS |
| GAGTTGAACCTGGCCCCAAA+AGG | 0.530522 | 1_3:-55013420 | Msa0126090:CDS |
| ACTGCAATCAAGTGCTTGGT+TGG | 0.543372 | 1_3:-55006559 | Msa0126090:CDS |
| TGAGAGAGTGTTCACCTGAA+AGG | 0.545507 | 1_3:+55007123 | None:intergenic |
| TTTCAGGGAAGAAATGGAAG+AGG | 0.547363 | 1_3:-55006680 | Msa0126090:intron |
| GAAGTTTGAGAGAGTCTATG+AGG | 0.548405 | 1_3:-55006537 | Msa0126090:CDS |
| CGCTTTCGAATGCTACAACC+TGG | 0.550383 | 1_3:+55010827 | None:intergenic |
| GATGAAATTGGAGTTGAACC+TGG | 0.567212 | 1_3:-55013430 | Msa0126090:CDS |
| AAAGCGTGTAGAGAGAGCTT+GGG | 0.573571 | 1_3:-55010810 | Msa0126090:CDS |
| GCGTGTAGAGAGAGCTTGGG+TGG | 0.595065 | 1_3:-55010807 | Msa0126090:CDS |
| GTAGACATGGAATTCATGAC+AGG | 0.597395 | 1_3:-55006614 | Msa0126090:CDS |
| TGAGGAAACTCAAAAGTACA+AGG | 0.598867 | 1_3:-55006519 | Msa0126090:CDS |
| AATAGGGCCAAAAGTAGACA+TGG | 0.602332 | 1_3:-55006627 | Msa0126090:CDS |
| GAAACTCAAAAGTACAAGGA+AGG | 0.606538 | 1_3:-55006515 | Msa0126090:CDS |
| TTGAACCTGGCCCCAAAAGG+AGG | 0.616002 | 1_3:-55013417 | Msa0126090:intron |
| TATCATCATGAAGGGCAACA+TGG | 0.616437 | 1_3:+55007158 | None:intergenic |
| TAGGAGCTACTACAAATGTA+CGG | 0.634951 | 1_3:-55010852 | Msa0126090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTTTTATATTTT+GGG | + | chr1_3:55011407-55011426 | None:intergenic | 0.0% |
| !!! | TTTTTATATTTTTTATATTT+TGG | + | chr1_3:55011408-55011427 | None:intergenic | 0.0% |
| !! | AATTTAATTAAGGAAAATTT+AGG | + | chr1_3:55008575-55008594 | None:intergenic | 10.0% |
| !!! | ATCTCATATTTTTTTATTTA+TGG | + | chr1_3:55008144-55008163 | None:intergenic | 10.0% |
| !!! | TTTTATTTGTACAAAAAAAA+AGG | - | chr1_3:55008237-55008256 | Msa0126090:intron | 10.0% |
| !! | AATTTAATTAAGGAAAATTT+AGG | - | chr1_3:55008575-55008594 | Msa0126090:intron | 10.0% |
| !! | TAAAGAATAAAAAGAATTAA+TGG | - | chr1_3:55008600-55008619 | Msa0126090:intron | 10.0% |
| !! | AAGTTTAAAAAAAAGAATTA+GGG | + | chr1_3:55009948-55009967 | None:intergenic | 10.0% |
| !! | TAAGTTTAAAAAAAAGAATT+AGG | + | chr1_3:55009949-55009968 | None:intergenic | 10.0% |
| !! | ATAAAAAATACAATATATCA+AGG | - | chr1_3:55010017-55010036 | Msa0126090:intron | 10.0% |
| !! | ATATCTCAATAAAAAAAAAT+TGG | - | chr1_3:55010530-55010549 | Msa0126090:intron | 10.0% |
| !! | TATCTCAATAAAAAAAAATT+GGG | - | chr1_3:55010531-55010550 | Msa0126090:intron | 10.0% |
| !!! | ATTTTTTTAAGTCTAATTTT+AGG | + | chr1_3:55011048-55011067 | None:intergenic | 10.0% |
| !!! | ATAAAAATCGATATTTTATA+AGG | + | chr1_3:55011089-55011108 | None:intergenic | 10.0% |
| !!! | AAAATATCGATTTTTATTTT+TGG | - | chr1_3:55011092-55011111 | Msa0126090:intron | 10.0% |
| !!! | AAAAAATGTGAAATTTTAAA+TGG | + | chr1_3:55011118-55011137 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATAAAAGTTAG+AGG | - | chr1_3:55011272-55011291 | Msa0126090:intron | 10.0% |
| !! | ACTTAAAAAAATAAAGTATA+AGG | - | chr1_3:55011523-55011542 | Msa0126090:intron | 10.0% |
| !! | ATTTATATGAATTTAATTGA+TGG | - | chr1_3:55011925-55011944 | Msa0126090:intron | 10.0% |
| !! | TTTATATGAATTTAATTGAT+GGG | - | chr1_3:55011926-55011945 | Msa0126090:intron | 10.0% |
| !! | ACACATAATATATAAATTAA+GGG | + | chr1_3:55012120-55012139 | None:intergenic | 10.0% |
| !!! | TAAATTTGAAATTGAATTAT+TGG | + | chr1_3:55012569-55012588 | None:intergenic | 10.0% |
| !! | AAATTATATATAAATGAACT+TGG | + | chr1_3:55013235-55013254 | None:intergenic | 10.0% |
| !! | TTCATTTATATATAATTTCA+GGG | - | chr1_3:55013237-55013256 | Msa0126090:intron | 10.0% |
| !! | ATCAAATAGTTTCTTTATAT+AGG | - | chr1_3:55006647-55006666 | Msa0126090:CDS | 15.0% |
| !!! | GAATAATTGAATTCATTTTT+TGG | + | chr1_3:55006870-55006889 | None:intergenic | 15.0% |
| !! | AATTATTCACATTTATTAGT+AGG | - | chr1_3:55006882-55006901 | Msa0126090:intron | 15.0% |
| !! | TTTATACTTTGTCAAAATTT+GGG | - | chr1_3:55007125-55007144 | Msa0126090:intron | 15.0% |
| !!! | TTCCATGTATTATTTTTTTT+TGG | - | chr1_3:55007154-55007173 | Msa0126090:CDS | 15.0% |
| !!! | TCCATGTATTATTTTTTTTT+GGG | - | chr1_3:55007155-55007174 | Msa0126090:CDS | 15.0% |
| !! | ATATCAACTTAATTATGAAT+GGG | - | chr1_3:55007411-55007430 | Msa0126090:intron | 15.0% |
| !! | TTGTCAAAAAAAAAAAAAAC+AGG | + | chr1_3:55007925-55007944 | None:intergenic | 15.0% |
| !!! | ATTTAGGTTTAAAGAATTAA+TGG | + | chr1_3:55007951-55007970 | None:intergenic | 15.0% |
| !! | ATTGAATATGTAGTAATTAT+AGG | + | chr1_3:55008167-55008186 | None:intergenic | 15.0% |
| !!! | TTTTATTGAATCATCATTTT+AGG | - | chr1_3:55008429-55008448 | Msa0126090:intron | 15.0% |
| !! | ATTATGTTTAATTCCTTAAA+AGG | - | chr1_3:55008540-55008559 | Msa0126090:intron | 15.0% |
| !!! | TTAATTCTTTAATCCTTTTA+AGG | + | chr1_3:55008556-55008575 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAACAGATTTG+AGG | - | chr1_3:55008631-55008650 | Msa0126090:intron | 15.0% |
| !! | AACAAATAATACATGAAATT+CGG | + | chr1_3:55008984-55009003 | None:intergenic | 15.0% |
| !!! | AATTGTTTTCTTCTAAAAAA+AGG | - | chr1_3:55009020-55009039 | Msa0126090:intron | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr1_3:55009378-55009397 | Msa0126090:intron | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr1_3:55009379-55009398 | Msa0126090:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr1_3:55009443-55009462 | Msa0126090:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr1_3:55009444-55009463 | Msa0126090:intron | 15.0% |
| !! | ATCTCAATAAAAAAAAATTG+GGG | - | chr1_3:55010532-55010551 | Msa0126090:intron | 15.0% |
| !!! | ATTGAAAGTTGAATTTTTTT+TGG | - | chr1_3:55010629-55010648 | Msa0126090:intron | 15.0% |
| !!! | TTTTTTTTGGAAACTAATTT+TGG | - | chr1_3:55010642-55010661 | Msa0126090:intron | 15.0% |
| !!! | TTTTTTTGGAAACTAATTTT+GGG | - | chr1_3:55010643-55010662 | Msa0126090:intron | 15.0% |
| !! | ATTTCAATTTAAAAAATGAG+CGG | + | chr1_3:55010817-55010836 | None:intergenic | 15.0% |
| !!! | AAAACATTTGTTTTCATAAA+AGG | + | chr1_3:55011199-55011218 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTGAGAGA+AGG | - | chr1_3:55011304-55011323 | Msa0126090:intron | 15.0% |
| !!! | ACAAATATATCAAGTTTTAT+AGG | - | chr1_3:55011363-55011382 | Msa0126090:intron | 15.0% |
| !!! | TGTTTATTTTATTAAATCGT+GGG | + | chr1_3:55011553-55011572 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTATTAAATCG+TGG | + | chr1_3:55011554-55011573 | None:intergenic | 15.0% |
| !! | GATTTAATAAAATAAACAAG+AGG | - | chr1_3:55011555-55011574 | Msa0126090:intron | 15.0% |
| !!! | TTTTATTTTTTTTGAAGAAG+AGG | - | chr1_3:55011590-55011609 | Msa0126090:intron | 15.0% |
| !! | GACACATAATATATAAATTA+AGG | + | chr1_3:55012121-55012140 | None:intergenic | 15.0% |
| !!! | GTATCAAAAATTCTTTAAAA+TGG | + | chr1_3:55012952-55012971 | None:intergenic | 15.0% |
| !!! | TATAAGAACGTTATATATTT+TGG | - | chr1_3:55013157-55013176 | Msa0126090:intron | 15.0% |
| !! | CAATTTATAATAACATGTTT+AGG | - | chr1_3:55013193-55013212 | Msa0126090:intron | 15.0% |
| !! | GTTCATTTATATATAATTTC+AGG | - | chr1_3:55013236-55013255 | Msa0126090:intron | 15.0% |
| !! | TAGATAAAATTAAAGTGTGA+AGG | + | chr1_3:55006798-55006817 | None:intergenic | 20.0% |
| !! | CCACTTATTAATAAACTATA+TGG | + | chr1_3:55006956-55006975 | None:intergenic | 20.0% |
| !! | CCATATAGTTTATTAATAAG+TGG | - | chr1_3:55006953-55006972 | Msa0126090:intron | 20.0% |
| !!! | TTTTACATATGTTCAACTTA+AGG | + | chr1_3:55007091-55007110 | None:intergenic | 20.0% |
| !!! | TTAAGTTGAACATATGTAAA+AGG | - | chr1_3:55007090-55007109 | Msa0126090:intron | 20.0% |
| !! | CTTTATACTTTGTCAAAATT+TGG | - | chr1_3:55007124-55007143 | Msa0126090:intron | 20.0% |
| !! | ACCCAAAAAAAAATAATACA+TGG | + | chr1_3:55007159-55007178 | None:intergenic | 20.0% |
| !!! | ATAATTAAGTTGATATGGTT+CGG | + | chr1_3:55007407-55007426 | None:intergenic | 20.0% |
| !!! | CATTCATAATTAAGTTGATA+TGG | + | chr1_3:55007412-55007431 | None:intergenic | 20.0% |
| !! | CATATCAACTTAATTATGAA+TGG | - | chr1_3:55007410-55007429 | Msa0126090:intron | 20.0% |
| !! | TTATAAGTAAATACGTAGTT+TGG | - | chr1_3:55007510-55007529 | Msa0126090:intron | 20.0% |
| !! | TTGTAAATGAAATTAGAGTT+AGG | - | chr1_3:55007545-55007564 | Msa0126090:intron | 20.0% |
| !! | AAAAAAAAAAAACAGGTTTG+AGG | + | chr1_3:55007918-55007937 | None:intergenic | 20.0% |
| !! | AAATCCATATTTCTTCATTA+TGG | + | chr1_3:55008058-55008077 | None:intergenic | 20.0% |
| !! | AAAAAGAATCGTGTATTTAA+TGG | + | chr1_3:55008086-55008105 | None:intergenic | 20.0% |
| !! | ACGTTTCTTAATTAAAAAGA+GGG | - | chr1_3:55008188-55008207 | Msa0126090:intron | 20.0% |
| !!! | TTTTTTTAAGAATAGAAGAG+TGG | - | chr1_3:55008214-55008233 | Msa0126090:intron | 20.0% |
| !! | TTACATGAACTTATCAATTA+CGG | + | chr1_3:55008893-55008912 | None:intergenic | 20.0% |
| !! | ACAAATAATACATGAAATTC+GGG | + | chr1_3:55008983-55009002 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr1_3:55009380-55009399 | Msa0126090:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1_3:55009403-55009422 | Msa0126090:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr1_3:55009476-55009495 | Msa0126090:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr1_3:55009477-55009496 | Msa0126090:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr1_3:55009513-55009532 | Msa0126090:intron | 20.0% |
| !!! | TTATTTTACAAAAATGCATG+TGG | - | chr1_3:55009589-55009608 | Msa0126090:intron | 20.0% |
| !!! | GAATTATTGCAATATTTTCA+TGG | - | chr1_3:55009711-55009730 | Msa0126090:intron | 20.0% |
| !! | TTGTTCATAGTTATTAAACA+TGG | - | chr1_3:55010059-55010078 | Msa0126090:intron | 20.0% |
| !! | TGTTCATAGTTATTAAACAT+GGG | - | chr1_3:55010060-55010079 | Msa0126090:intron | 20.0% |
| !!! | TTTATGAACATTTTTATCGT+CGG | - | chr1_3:55010095-55010114 | Msa0126090:intron | 20.0% |
| !! | ATCTTGAGAATAATAAAAGT+TGG | + | chr1_3:55010127-55010146 | None:intergenic | 20.0% |
| !!! | TATTTTTCAGCTAAAGAAAA+TGG | + | chr1_3:55010209-55010228 | None:intergenic | 20.0% |
| !! | ATTGTTAAGTATGATTGAAA+AGG | + | chr1_3:55010413-55010432 | None:intergenic | 20.0% |
| !!! | TTTTCAATCATACTTAACAA+TGG | - | chr1_3:55010412-55010431 | Msa0126090:intron | 20.0% |
| !! | ACGGTACAAAATTATAAAAT+TGG | - | chr1_3:55010563-55010582 | Msa0126090:intron | 20.0% |
| !! | CGGTACAAAATTATAAAATT+GGG | - | chr1_3:55010564-55010583 | Msa0126090:intron | 20.0% |
| !! | GGTACAAAATTATAAAATTG+GGG | - | chr1_3:55010565-55010584 | Msa0126090:intron | 20.0% |
| !!! | ATATTTTAAGTATAAGTCCA+TGG | + | chr1_3:55010739-55010758 | None:intergenic | 20.0% |
| !!! | AATTTCACATTTTTTCTTGA+AGG | - | chr1_3:55011123-55011142 | Msa0126090:intron | 20.0% |
| !!! | TTTTTTATAAAAGTTAGAGG+AGG | - | chr1_3:55011275-55011294 | Msa0126090:intron | 20.0% |
| !!! | TTAAAAGATGCAAGTTTTAT+AGG | - | chr1_3:55011336-55011355 | Msa0126090:intron | 20.0% |
| !!! | GCTCTTAATTATTTTCTTAA+AGG | + | chr1_3:55011482-55011501 | None:intergenic | 20.0% |
| !!! | ACTTTATTTTTTTAAGTCGT+GGG | + | chr1_3:55011520-55011539 | None:intergenic | 20.0% |
| !!! | TACTTTATTTTTTTAAGTCG+TGG | + | chr1_3:55011521-55011540 | None:intergenic | 20.0% |
| !! | TTAATAAAATAAACAAGAGG+TGG | - | chr1_3:55011558-55011577 | Msa0126090:intron | 20.0% |
| !! | TAAAAGAGATTATTACTTGT+CGG | + | chr1_3:55012393-55012412 | None:intergenic | 20.0% |
| !!! | GAAAAAAAATCTCATTTTGT+GGG | - | chr1_3:55012438-55012457 | Msa0126090:intron | 20.0% |
| !! | TGAAATAATATCATCATGAA+GGG | + | chr1_3:55012785-55012804 | None:intergenic | 20.0% |
| !! | TTGAAATAATATCATCATGA+AGG | + | chr1_3:55012786-55012805 | None:intergenic | 20.0% |
| !! | TATTATTTCAAAAACCTTTC+AGG | - | chr1_3:55012795-55012814 | Msa0126090:intron | 20.0% |
| !! | AAAGAATACAAATCAAATGA+AGG | + | chr1_3:55012894-55012913 | None:intergenic | 20.0% |
| !!! | ATACAATGAAAGTATGAAAA+TGG | + | chr1_3:55012978-55012997 | None:intergenic | 20.0% |
| ! | ACACAGATATGTTTATATAG+TGG | - | chr1_3:55006554-55006573 | Msa0126090:CDS | 25.0% |
| !!! | TCTTAGATGATGGATATAAT+TGG | - | chr1_3:55006714-55006733 | Msa0126090:intron | 25.0% |
| ! | GGATATAATTGGAGAAAATA+CGG | - | chr1_3:55006725-55006744 | Msa0126090:intron | 25.0% |
| ! | GATATAATTGGAGAAAATAC+GGG | - | chr1_3:55006726-55006745 | Msa0126090:intron | 25.0% |
| ! | TGAATTATCCATGAATGTTA+TGG | - | chr1_3:55006819-55006838 | Msa0126090:intron | 25.0% |
| ! | TAGTTTATTAATAAGTGGAC+AGG | - | chr1_3:55006958-55006977 | Msa0126090:intron | 25.0% |
| ! | TTCCTCTATAGTATAATTCT+TGG | - | chr1_3:55007014-55007033 | Msa0126090:intron | 25.0% |
| ! | ATCCAAGAATTATACTATAG+AGG | + | chr1_3:55007019-55007038 | None:intergenic | 25.0% |
| !!! | TAATTAAGTTGATATGGTTC+GGG | + | chr1_3:55007406-55007425 | None:intergenic | 25.0% |
| !! | AACTTAATTATGAATGGGTT+GGG | - | chr1_3:55007416-55007435 | Msa0126090:intron | 25.0% |
| !! | GTTGAACTCATAATTGTTTT+TGG | - | chr1_3:55007567-55007586 | Msa0126090:intron | 25.0% |
| ! | ATTGAGCTCAGATAAAAAAT+AGG | - | chr1_3:55007595-55007614 | Msa0126090:intron | 25.0% |
| ! | GTCCAACCAAAAAATAATAT+GGG | - | chr1_3:55007687-55007706 | Msa0126090:intron | 25.0% |
| !!! | AACTTGCCCATATTATTTTT+TGG | + | chr1_3:55007696-55007715 | None:intergenic | 25.0% |
| ! | AAAAAATAATATGGGCAAGT+TGG | - | chr1_3:55007695-55007714 | Msa0126090:intron | 25.0% |
| ! | TAACTGCCAAATTATAAAAC+CGG | - | chr1_3:55007811-55007830 | Msa0126090:intron | 25.0% |
| ! | CACGTTTCTTAATTAAAAAG+AGG | - | chr1_3:55008187-55008206 | Msa0126090:intron | 25.0% |
| ! | TATATGCAATCAGTAGTTAA+TGG | + | chr1_3:55008456-55008475 | None:intergenic | 25.0% |
| ! | TACATGAACTTATCAATTAC+GGG | + | chr1_3:55008892-55008911 | None:intergenic | 25.0% |
| ! | GTTCATGTAATTAGTGAATT+TGG | - | chr1_3:55008903-55008922 | Msa0126090:intron | 25.0% |
| ! | CAAATAATACATGAAATTCG+GGG | + | chr1_3:55008982-55009001 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr1_3:55009402-55009421 | Msa0126090:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr1_3:55009512-55009531 | Msa0126090:intron | 25.0% |
| ! | TTCAGTAAAGTCAATTCTAA+GGG | + | chr1_3:55009640-55009659 | None:intergenic | 25.0% |
| ! | GATAAGTTTGGCAAAAAAAT+CGG | + | chr1_3:55009855-55009874 | None:intergenic | 25.0% |
| !! | GTTTGAGATTATGATAAGTT+TGG | + | chr1_3:55009867-55009886 | None:intergenic | 25.0% |
| ! | AGTGATTCCAAAACTTTAAT+AGG | - | chr1_3:55010325-55010344 | Msa0126090:intron | 25.0% |
| ! | CATGTCAATTCAAATTAAGA+TGG | + | chr1_3:55010389-55010408 | None:intergenic | 25.0% |
| !!! | GATTTTGTACTTACTTTTTG+AGG | + | chr1_3:55010509-55010528 | None:intergenic | 25.0% |
| !! | TATAATTTTGTACCGTCTAA+TGG | + | chr1_3:55010559-55010578 | None:intergenic | 25.0% |
| !!! | CTGATTAAGTTGAATGTTAA+AGG | + | chr1_3:55010592-55010611 | None:intergenic | 25.0% |
| ! | CTTTAACATTCAACTTAATC+AGG | - | chr1_3:55010590-55010609 | Msa0126090:intron | 25.0% |
| ! | TTATGTGAGACTATAAAATC+TGG | - | chr1_3:55010675-55010694 | Msa0126090:intron | 25.0% |
| ! | AATCTGGAGATATTGTAATA+TGG | - | chr1_3:55010691-55010710 | Msa0126090:intron | 25.0% |
| ! | ATCTGGAGATATTGTAATAT+GGG | - | chr1_3:55010692-55010711 | Msa0126090:intron | 25.0% |
| !! | CTATTGATAGTAGATGTTAA+CGG | - | chr1_3:55010789-55010808 | Msa0126090:CDS | 25.0% |
| ! | TTCTTAGTGTAAATATGAGA+AGG | - | chr1_3:55010910-55010929 | Msa0126090:intron | 25.0% |
| !!! | ATTTAAGTATTGATTTGCGT+AGG | - | chr1_3:55010988-55011007 | Msa0126090:intron | 25.0% |
| !!! | TATTTTTTTTGAAGAAGAGG+TGG | - | chr1_3:55011593-55011612 | Msa0126090:intron | 25.0% |
| ! | GAACAAACTACTTAAACTTA+CGG | - | chr1_3:55011629-55011648 | Msa0126090:intron | 25.0% |
| ! | AACAAACTACTTAAACTTAC+GGG | - | chr1_3:55011630-55011649 | Msa0126090:intron | 25.0% |
| ! | AGAAATGACGTATTAAGTTT+AGG | + | chr1_3:55011836-55011855 | None:intergenic | 25.0% |
| ! | TTGACTAACAATTTCTTCTT+TGG | + | chr1_3:55011991-55012010 | None:intergenic | 25.0% |
| ! | GCTAAATAAAATGATGAGTT+GGG | + | chr1_3:55012304-55012323 | None:intergenic | 25.0% |
| ! | AGCTAAATAAAATGATGAGT+TGG | + | chr1_3:55012305-55012324 | None:intergenic | 25.0% |
| !!! | AACTCATCATTTTATTTAGC+TGG | - | chr1_3:55012304-55012323 | Msa0126090:intron | 25.0% |
| !! | GGAAAAAAAATCTCATTTTG+TGG | - | chr1_3:55012437-55012456 | Msa0126090:intron | 25.0% |
| !!! | ATTATGCAAGTTTTGTTTTG+AGG | + | chr1_3:55012504-55012523 | None:intergenic | 25.0% |
| ! | TTCCAAATCTTAATAGAGAA+AGG | + | chr1_3:55012835-55012854 | None:intergenic | 25.0% |
| ! | TCACAAAAGTTGTCTAAAAA+TGG | - | chr1_3:55013053-55013072 | Msa0126090:intron | 25.0% |
| ! | ATATAATTTCAGGGAAGAAA+TGG | - | chr1_3:55013246-55013265 | Msa0126090:intron | 25.0% |
| !! | TTGAGAAGTCTAAAATTGTT+AGG | - | chr1_3:55013451-55013470 | Msa0126090:CDS | 25.0% |
| !! | TGAGAAGTCTAAAATTGTTA+GGG | - | chr1_3:55013452-55013471 | Msa0126090:CDS | 25.0% |
| ! | ATAAAAACCTACCTCCTTTT+GGG | + | chr1_3:55006529-55006548 | None:intergenic | 30.0% |
| ! | AATAAAAACCTACCTCCTTT+TGG | + | chr1_3:55006530-55006549 | None:intergenic | 30.0% |
| ! | CACTGGTTGTTATTATTTCT+AGG | + | chr1_3:55006685-55006704 | None:intergenic | 30.0% |
| AGAAATATCACCTAGGATTA+GGG | + | chr1_3:55006772-55006791 | None:intergenic | 30.0% | |
| AAGAAATATCACCTAGGATT+AGG | + | chr1_3:55006773-55006792 | None:intergenic | 30.0% | |
| AAAGACAACCATAACATTCA+TGG | + | chr1_3:55006830-55006849 | None:intergenic | 30.0% | |
| GTTCATCCAAGAATTGAAAT+CGG | - | chr1_3:55007259-55007278 | Msa0126090:intron | 30.0% | |
| TTCATCCAAGAATTGAAATC+GGG | - | chr1_3:55007260-55007279 | Msa0126090:intron | 30.0% | |
| !! | CAACCCGTTTAATTTTCAAT+GGG | - | chr1_3:55007343-55007362 | Msa0126090:intron | 30.0% |
| CAACTTAATTATGAATGGGT+TGG | - | chr1_3:55007415-55007434 | Msa0126090:intron | 30.0% | |
| GGTCCAACCAAAAAATAATA+TGG | - | chr1_3:55007686-55007705 | Msa0126090:intron | 30.0% | |
| !!! | TGCCCATATTATTTTTTGGT+TGG | + | chr1_3:55007692-55007711 | None:intergenic | 30.0% |
| ! | TTCTTAAGTTTTTGAACTCG+TGG | + | chr1_3:55007723-55007742 | None:intergenic | 30.0% |
| GTTGCCATAATGAAGAAATA+TGG | - | chr1_3:55008051-55008070 | Msa0126090:intron | 30.0% | |
| CTCTCGTATTTCTTCATTTA+TGG | - | chr1_3:55008484-55008503 | Msa0126090:intron | 30.0% | |
| ATACCTGAAACTAAACTTTG+TGG | - | chr1_3:55008850-55008869 | Msa0126090:intron | 30.0% | |
| TACCTGAAACTAAACTTTGT+GGG | - | chr1_3:55008851-55008870 | Msa0126090:intron | 30.0% | |
| GATTATTTGTTCTTCACTAC+AGG | + | chr1_3:55009303-55009322 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr1_3:55009387-55009406 | Msa0126090:intron | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr1_3:55009490-55009509 | Msa0126090:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr1_3:55009491-55009510 | Msa0126090:intron | 30.0% |
| CATCCTTAAACATAGTTATG+TGG | - | chr1_3:55009614-55009633 | Msa0126090:intron | 30.0% | |
| GTTCAGTAAAGTCAATTCTA+AGG | + | chr1_3:55009641-55009660 | None:intergenic | 30.0% | |
| ! | TCTCAAGATTTCTAAAGATG+TGG | - | chr1_3:55010138-55010157 | Msa0126090:intron | 30.0% |
| !!! | TCACCCCCATTTTATTTTTT+GGG | - | chr1_3:55010171-55010190 | Msa0126090:intron | 30.0% |
| AAGCCCCCAAAAAATAAAAT+GGG | + | chr1_3:55010179-55010198 | None:intergenic | 30.0% | |
| AAAGCCCCCAAAAAATAAAA+TGG | + | chr1_3:55010180-55010199 | None:intergenic | 30.0% | |
| TAGCTGAAAAATATCTCAAG+AGG | - | chr1_3:55010216-55010235 | Msa0126090:intron | 30.0% | |
| AGCTGAAAAATATCTCAAGA+GGG | - | chr1_3:55010217-55010236 | Msa0126090:intron | 30.0% | |
| AAAGAGTCTTTGAATCTTGT+TGG | - | chr1_3:55010271-55010290 | Msa0126090:intron | 30.0% | |
| TTCCAAAACTTTAATAGGCA+TGG | - | chr1_3:55010330-55010349 | Msa0126090:intron | 30.0% | |
| AACAATGGACAATAGAATTG+TGG | - | chr1_3:55010427-55010446 | Msa0126090:intron | 30.0% | |
| !!! | GTACTTACTTTTTGAGGTTT+AGG | + | chr1_3:55010503-55010522 | None:intergenic | 30.0% |
| CCATGGTGAATTATTTATGA+AGG | + | chr1_3:55010722-55010741 | None:intergenic | 30.0% | |
| CCTTCATAAATAATTCACCA+TGG | - | chr1_3:55010719-55010738 | Msa0126090:intron | 30.0% | |
| ACCAGTTTGACTAAAAAATG+AGG | - | chr1_3:55010852-55010871 | Msa0126090:CDS | 30.0% | |
| !!! | TCCTCATTTTTTAGTCAAAC+TGG | + | chr1_3:55010856-55010875 | None:intergenic | 30.0% |
| !!! | TTTTAGGATGAATTCTTCGA+TGG | + | chr1_3:55011032-55011051 | None:intergenic | 30.0% |
| CCGTATCTATTATAACAATG+CGG | + | chr1_3:55011227-55011246 | None:intergenic | 30.0% | |
| CCGCATTGTTATAATAGATA+CGG | - | chr1_3:55011224-55011243 | Msa0126090:intron | 30.0% | |
| ACTAGTCAAGGGATTATAAA+AGG | + | chr1_3:55011787-55011806 | None:intergenic | 30.0% | |
| ! | TTATTAGAGTTTTCTACGCA+TGG | + | chr1_3:55011906-55011925 | None:intergenic | 30.0% |
| GAAAACACACGAGTTATTAT+TGG | - | chr1_3:55012185-55012204 | Msa0126090:intron | 30.0% | |
| TGAAGACAATCAATCATCAA+CGG | - | chr1_3:55012524-55012543 | Msa0126090:intron | 30.0% | |
| ATATGATGATTATCTGCGTT+TGG | - | chr1_3:55012638-55012657 | Msa0126090:intron | 30.0% | |
| !! | TTTTATAGCCACTTTGTGAA+GGG | - | chr1_3:55012679-55012698 | Msa0126090:intron | 30.0% |
| !! | AGCTCATAAAAGCTTTGAAA+TGG | - | chr1_3:55012705-55012724 | Msa0126090:intron | 30.0% |
| ! | TTTGAAATGGAGAGTTTGAT+TGG | - | chr1_3:55012718-55012737 | Msa0126090:intron | 30.0% |
| CACCTTTCTCTATTAAGATT+TGG | - | chr1_3:55012830-55012849 | Msa0126090:intron | 30.0% | |
| ATCAACACAGTATAAACATG+TGG | - | chr1_3:55012864-55012883 | Msa0126090:intron | 30.0% | |
| ! | GCACATGTGTTAGAATTTTT+GGG | + | chr1_3:55013128-55013147 | None:intergenic | 30.0% |
| ! | TGCACATGTGTTAGAATTTT+TGG | + | chr1_3:55013129-55013148 | None:intergenic | 30.0% |
| ATGCAATGAATGTCACAATA+GGG | - | chr1_3:55013289-55013308 | Msa0126090:intron | 30.0% | |
| ! | ATGAATTCCATGTCTACTTT+TGG | + | chr1_3:55013315-55013334 | None:intergenic | 30.0% |
| AGTAAACATCAGCAATTGTA+TGG | + | chr1_3:55013347-55013366 | None:intergenic | 30.0% | |
| GAACTAGGTTGTGATGAAAT+TGG | - | chr1_3:55006490-55006509 | Msa0126090:CDS | 35.0% | |
| ! | TAAAAACCTACCTCCTTTTG+GGG | + | chr1_3:55006528-55006547 | None:intergenic | 35.0% |
| !! | GTTATTATTTCTAGGCTCTC+TGG | + | chr1_3:55006677-55006696 | None:intergenic | 35.0% |
| ! | ATCTAAGACATCAATCTCAC+TGG | + | chr1_3:55006702-55006721 | None:intergenic | 35.0% |
| GAGATTGATGTCTTAGATGA+TGG | - | chr1_3:55006704-55006723 | Msa0126090:intron | 35.0% | |
| AAGGTGAAGAAATATCACCT+AGG | + | chr1_3:55006779-55006798 | None:intergenic | 35.0% | |
| TCACAGCCAACTCAAATTAT+CGG | + | chr1_3:55007213-55007232 | None:intergenic | 35.0% | |
| !! | ATAATTTGAGTTGGCTGTGA+GGG | - | chr1_3:55007213-55007232 | Msa0126090:intron | 35.0% |
| ! | CGTAATTAGTTTGGTCAAAC+CGG | + | chr1_3:55007323-55007342 | None:intergenic | 35.0% |
| !! | GCAACCCGTTTAATTTTCAA+TGG | - | chr1_3:55007342-55007361 | Msa0126090:intron | 35.0% |
| CGACCCATTGAAAATTAAAC+GGG | + | chr1_3:55007349-55007368 | None:intergenic | 35.0% | |
| CCGACCCATTGAAAATTAAA+CGG | + | chr1_3:55007350-55007369 | None:intergenic | 35.0% | |
| !! | CCGTTTAATTTTCAATGGGT+CGG | - | chr1_3:55007347-55007366 | Msa0126090:intron | 35.0% |
| !! | CGTTTAATTTTCAATGGGTC+GGG | - | chr1_3:55007348-55007367 | Msa0126090:intron | 35.0% |
| TAAATCAATACCGACGAGTT+AGG | - | chr1_3:55007665-55007684 | Msa0126090:intron | 35.0% | |
| ! | TGTTGTTGACACATTAGCTT+TGG | - | chr1_3:55007746-55007765 | Msa0126090:intron | 35.0% |
| ! | AAAAGACGTTTTTACCCCTT+CGG | - | chr1_3:55007784-55007803 | Msa0126090:intron | 35.0% |
| TTAACTACCGAGGAAAACTT+CGG | - | chr1_3:55007840-55007859 | Msa0126090:intron | 35.0% | |
| GCGAGGAAAATTGAAAACTT+CGG | - | chr1_3:55007873-55007892 | Msa0126090:intron | 35.0% | |
| ! | AAACAGATTTGAGGTTTCCT+CGG | - | chr1_3:55008640-55008659 | Msa0126090:intron | 35.0% |
| TTAACTACCGAGGAAAACTT+CGG | + | chr1_3:55007840-55007859 | None:intergenic | 35.0% | |
| TAACTGCCGAATTATGAAAC+CGG | + | chr1_3:55008738-55008757 | None:intergenic | 35.0% | |
| ! | AAAAGACGTTTTTACCCCTT+CGG | + | chr1_3:55007784-55007803 | None:intergenic | 35.0% |
| ! | AACCCACAAAGTTTAGTTTC+AGG | + | chr1_3:55008856-55008875 | None:intergenic | 35.0% |
| TGAAACTAAACTTTGTGGGT+TGG | - | chr1_3:55008855-55008874 | Msa0126090:intron | 35.0% | |
| AATACATGAAATTCGGGGAT+AGG | + | chr1_3:55008977-55008996 | None:intergenic | 35.0% | |
| TGCTTGCCTGTATAATGTTT+AGG | - | chr1_3:55009061-55009080 | Msa0126090:intron | 35.0% | |
| GTAGCTCCTAAACATTATAC+AGG | + | chr1_3:55009070-55009089 | None:intergenic | 35.0% | |
| TAGGAGCTACTACAAATGTA+CGG | - | chr1_3:55009080-55009099 | Msa0126090:intron | 35.0% | |
| TACGTTGTGATGACATCTTT+AGG | + | chr1_3:55009153-55009172 | None:intergenic | 35.0% | |
| ATGTTGGAACGTCATGATTA+TGG | + | chr1_3:55009185-55009204 | None:intergenic | 35.0% | |
| TATTTCCAACACCAGTTATG+AGG | - | chr1_3:55009224-55009243 | Msa0126090:intron | 35.0% | |
| TTACCAATACCGTCAAAACA+AGG | + | chr1_3:55009252-55009271 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACGGTATTGGTAA+TGG | - | chr1_3:55009252-55009271 | Msa0126090:intron | 35.0% |
| CAAAGTAGGTCAATTAAACC+GGG | + | chr1_3:55009343-55009362 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTAAAC+CGG | + | chr1_3:55009344-55009363 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr1_3:55009357-55009376 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr1_3:55009526-55009545 | Msa0126090:intron | 35.0% | |
| TGGTAAAACACTACTCATTG+TGG | - | chr1_3:55009731-55009750 | Msa0126090:intron | 35.0% | |
| TAAAATGGGGGTGAGTATTA+AGG | + | chr1_3:55010165-55010184 | None:intergenic | 35.0% | |
| !!! | CTCACCCCCATTTTATTTTT+TGG | - | chr1_3:55010170-55010189 | Msa0126090:intron | 35.0% |
| !!! | CACCCCCATTTTATTTTTTG+GGG | - | chr1_3:55010172-55010191 | Msa0126090:intron | 35.0% |
| !!! | ACCCCCATTTTATTTTTTGG+GGG | - | chr1_3:55010173-55010192 | Msa0126090:intron | 35.0% |
| AGCCCCCAAAAAATAAAATG+GGG | + | chr1_3:55010178-55010197 | None:intergenic | 35.0% | |
| GCTGAAAAATATCTCAAGAG+GGG | - | chr1_3:55010218-55010237 | Msa0126090:intron | 35.0% | |
| TCTTTGAATCTTGTTGGATG+AGG | - | chr1_3:55010277-55010296 | Msa0126090:intron | 35.0% | |
| ! | CACCATGCCTATTAAAGTTT+TGG | + | chr1_3:55010335-55010354 | None:intergenic | 35.0% |
| CAAAACTTTAATAGGCATGG+TGG | - | chr1_3:55010333-55010352 | Msa0126090:intron | 35.0% | |
| TGGACAATAGAATTGTGGAT+TGG | - | chr1_3:55010432-55010451 | Msa0126090:intron | 35.0% | |
| AAAAATTGGGGTCCATTAGA+CGG | - | chr1_3:55010544-55010563 | Msa0126090:intron | 35.0% | |
| !!! | TTTTTTTGAAGAAGAGGTGG+TGG | - | chr1_3:55011596-55011615 | Msa0126090:intron | 35.0% |
| AATGTTTAACTAGTGCCTCA+GGG | + | chr1_3:55011673-55011692 | None:intergenic | 35.0% | |
| AAATGTTTAACTAGTGCCTC+AGG | + | chr1_3:55011674-55011693 | None:intergenic | 35.0% | |
| ! | AATTGATGGGTCATGTTAAC+CGG | - | chr1_3:55011939-55011958 | Msa0126090:intron | 35.0% |
| TGTAAAGTGAGAGAAAAGTG+AGG | - | chr1_3:55012416-55012435 | Msa0126090:intron | 35.0% | |
| !! | GGATATTTGCTTGTTGTGTA+CGG | + | chr1_3:55012483-55012502 | None:intergenic | 35.0% |
| TCACAAAGTGGCTATAAAAC+TGG | + | chr1_3:55012678-55012697 | None:intergenic | 35.0% | |
| !! | GTTTTATAGCCACTTTGTGA+AGG | - | chr1_3:55012678-55012697 | Msa0126090:intron | 35.0% |
| CATGCAATGAATGTCACAAT+AGG | - | chr1_3:55013288-55013307 | Msa0126090:intron | 35.0% | |
| ! | TGAGGAAACTCAAAAGTACA+AGG | - | chr1_3:55013413-55013432 | Msa0126090:intron | 35.0% |
| ! | GAAACTCAAAAGTACAAGGA+AGG | - | chr1_3:55013417-55013436 | Msa0126090:intron | 35.0% |
| GATGAAATTGGAGTTGAACC+TGG | - | chr1_3:55006502-55006521 | Msa0126090:CDS | 40.0% | |
| TTGCAGAAATACAGAGATCG+CGG | - | chr1_3:55006618-55006637 | Msa0126090:CDS | 40.0% | |
| TGTTAACCCTCTAGATTCCA+AGG | - | chr1_3:55007178-55007197 | Msa0126090:intron | 40.0% | |
| GTTAACCCTCTAGATTCCAA+GGG | - | chr1_3:55007179-55007198 | Msa0126090:intron | 40.0% | |
| CACAGCCAACTCAAATTATC+GGG | + | chr1_3:55007212-55007231 | None:intergenic | 40.0% | |
| !! | GATAATTTGAGTTGGCTGTG+AGG | - | chr1_3:55007212-55007231 | Msa0126090:intron | 40.0% |
| AGTATCGCATGGTCAAGAAT+TGG | - | chr1_3:55007237-55007256 | Msa0126090:intron | 40.0% | |
| AAATCGGGTTCCCCTAAATA+AGG | - | chr1_3:55007275-55007294 | Msa0126090:intron | 40.0% | |
| AATCGGGTTCCCCTAAATAA+GGG | - | chr1_3:55007276-55007295 | Msa0126090:intron | 40.0% | |
| !! | AACGGGTTGCGTAATTAGTT+TGG | + | chr1_3:55007332-55007351 | None:intergenic | 40.0% |
| !! | CGGGTTTGATAGTGAAAATG+TGG | + | chr1_3:55007387-55007406 | None:intergenic | 40.0% |
| !! | TTGACACATTAGCTTTGGCT+AGG | - | chr1_3:55007751-55007770 | Msa0126090:intron | 40.0% |
| TTTGGCAGTTAACTACCGAA+GGG | + | chr1_3:55007802-55007821 | None:intergenic | 40.0% | |
| ATTTGGCAGTTAACTACCGA+AGG | + | chr1_3:55007803-55007822 | None:intergenic | 40.0% | |
| !! | CTGCAGCCGGTTTTATAATT+TGG | + | chr1_3:55007820-55007839 | None:intergenic | 40.0% |
| ! | TTTACTGCCGAAGTTTTCCT+CGG | + | chr1_3:55008699-55008718 | None:intergenic | 40.0% |
| ! | AAACAGGTTTGAGGTTTCCT+CGG | + | chr1_3:55007909-55007928 | None:intergenic | 40.0% |
| CCGAGGAAATCTGAAAACTT+CGG | + | chr1_3:55008676-55008695 | None:intergenic | 40.0% | |
| ! | CCGAAGTTTTCAGATTTCCT+CGG | - | chr1_3:55008673-55008692 | Msa0126090:intron | 40.0% |
| ! | TTTACTGCCGAAGTTTTCCT+CGG | - | chr1_3:55008699-55008718 | Msa0126090:intron | 40.0% |
| !! | TGACACATTAGCTTTGGCTA+GGG | + | chr1_3:55007752-55007771 | None:intergenic | 40.0% |
| !! | TTGACACATTAGCTTTGGCT+AGG | + | chr1_3:55007751-55007770 | None:intergenic | 40.0% |
| ! | TGCTGTTGACACATTAGCTT+TGG | + | chr1_3:55008803-55008822 | None:intergenic | 40.0% |
| !! | CTAAACTTTGTGGGTTGGAT+CGG | - | chr1_3:55008860-55008879 | Msa0126090:intron | 40.0% |
| !! | TAAACTTTGTGGGTTGGATC+GGG | - | chr1_3:55008861-55008880 | Msa0126090:intron | 40.0% |
| !! | TTTGGTTAGTTTGAGTCACC+AGG | - | chr1_3:55008921-55008940 | Msa0126090:intron | 40.0% |
| TACTACAAATGTACGGTACC+AGG | - | chr1_3:55009087-55009106 | Msa0126090:intron | 40.0% | |
| GATGTCATCACAACGTATGT+AGG | - | chr1_3:55009156-55009175 | Msa0126090:intron | 40.0% | |
| TCATGACGTTCCAACATCTA+TGG | - | chr1_3:55009188-55009207 | Msa0126090:intron | 40.0% | |
| TGGCTATTAGCCATAGATGT+TGG | + | chr1_3:55009201-55009220 | None:intergenic | 40.0% | |
| ! | AACTGGTGTTGGAAATAGTG+TGG | + | chr1_3:55009221-55009240 | None:intergenic | 40.0% |
| AAAACAAGGCTCCTCATAAC+TGG | + | chr1_3:55009238-55009257 | None:intergenic | 40.0% | |
| !!! | TATGAGGAGCCTTGTTTTGA+CGG | - | chr1_3:55009240-55009259 | Msa0126090:intron | 40.0% |
| !! | TTTGACGGTATTGGTAATGG+TGG | - | chr1_3:55009255-55009274 | Msa0126090:intron | 40.0% |
| CCGGTTTAATTGACCTACTT+TGG | - | chr1_3:55009341-55009360 | Msa0126090:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr1_3:55009527-55009546 | Msa0126090:intron | 40.0% | |
| GGGCCACATAACTATGTTTA+AGG | + | chr1_3:55009620-55009639 | None:intergenic | 40.0% | |
| GCCCCCAAAAAATAAAATGG+GGG | + | chr1_3:55010177-55010196 | None:intergenic | 40.0% | |
| GAAAAATATCTCAAGAGGGG+TGG | - | chr1_3:55010221-55010240 | Msa0126090:intron | 40.0% | |
| TGGACTAAGCTGAACTATGA+TGG | - | chr1_3:55010241-55010260 | Msa0126090:intron | 40.0% | |
| TTGAATCTTGTTGGATGAGG+TGG | - | chr1_3:55010280-55010299 | Msa0126090:intron | 40.0% | |
| !!! | GTTTTGGAATCACTTGCCAT+CGG | + | chr1_3:55010319-55010338 | None:intergenic | 40.0% |
| ! | TATCTGAGGTAGGATGAAGA+GGG | - | chr1_3:55010470-55010489 | Msa0126090:intron | 40.0% |
| ATGTTTAACTAGTGCCTCAG+GGG | + | chr1_3:55011672-55011691 | None:intergenic | 40.0% | |
| ! | ATCTCATTTTGTGGGTGACA+AGG | - | chr1_3:55012446-55012465 | Msa0126090:intron | 40.0% |
| TATCATCATGAAGGGCAACA+TGG | + | chr1_3:55012777-55012796 | None:intergenic | 40.0% | |
| TTTCAGGGAAGAAATGGAAG+AGG | - | chr1_3:55013252-55013271 | Msa0126090:intron | 40.0% | |
| AATAGGGCCAAAAGTAGACA+TGG | - | chr1_3:55013305-55013324 | Msa0126090:intron | 40.0% | |
| GTAGACATGGAATTCATGAC+AGG | - | chr1_3:55013318-55013337 | Msa0126090:intron | 40.0% | |
| GAAGTTTGAGAGAGTCTATG+AGG | - | chr1_3:55013395-55013414 | Msa0126090:intron | 40.0% | |
| !! | CCTAGTTCTGCATTGTCACT+TGG | + | chr1_3:55006478-55006497 | None:intergenic | 45.0% |
| CCAAGTGACAATGCAGAACT+AGG | - | chr1_3:55006475-55006494 | Msa0126090:CDS | 45.0% | |
| AGAAAATACGGGCAACGAGT+TGG | - | chr1_3:55006737-55006756 | Msa0126090:intron | 45.0% | |
| GCAAAGGAAACCCTAATCCT+AGG | - | chr1_3:55006759-55006778 | Msa0126090:intron | 45.0% | |
| ! | ACAGGTCTCGTAAGTTGACA+AGG | - | chr1_3:55006976-55006995 | Msa0126090:intron | 45.0% |
| ! | CAGGTCTCGTAAGTTGACAA+GGG | - | chr1_3:55006977-55006996 | Msa0126090:intron | 45.0% |
| ! | AGGTCTCGTAAGTTGACAAG+GGG | - | chr1_3:55006978-55006997 | Msa0126090:intron | 45.0% |
| GGGAACCCGATTTCAATTCT+TGG | + | chr1_3:55007268-55007287 | None:intergenic | 45.0% | |
| ! | CCGTGTACACCCTTATTTAG+GGG | + | chr1_3:55007288-55007307 | None:intergenic | 45.0% |
| ! | CCCCTAAATAAGGGTGTACA+CGG | - | chr1_3:55007285-55007304 | Msa0126090:intron | 45.0% |
| ! | CCCGTGTACACCCTTATTTA+GGG | + | chr1_3:55007289-55007308 | None:intergenic | 45.0% |
| ! | CCCTAAATAAGGGTGTACAC+GGG | - | chr1_3:55007286-55007305 | Msa0126090:intron | 45.0% |
| ! | ACCCGTGTACACCCTTATTT+AGG | + | chr1_3:55007290-55007309 | None:intergenic | 45.0% |
| ! | AAATAAGGGTGTACACGGGT+TGG | - | chr1_3:55007290-55007309 | Msa0126090:intron | 45.0% |
| ! | AATAAGGGTGTACACGGGTT+GGG | - | chr1_3:55007291-55007310 | Msa0126090:intron | 45.0% |
| !! | TTATGAATGGGTTGGGTTCG+TGG | - | chr1_3:55007423-55007442 | Msa0126090:intron | 45.0% |
| TTTGGTTGGACCTAACTCGT+CGG | + | chr1_3:55007678-55007697 | None:intergenic | 45.0% | |
| TTGGCAGTTAACTACCGAAG+GGG | + | chr1_3:55007801-55007820 | None:intergenic | 45.0% | |
| ! | CTGCAGCCGGTTTCATAATT+CGG | - | chr1_3:55008729-55008748 | Msa0126090:intron | 45.0% |
| ATTCGGCAGTTAACTACCGA+AGG | - | chr1_3:55008746-55008765 | Msa0126090:intron | 45.0% | |
| TTCGGCAGTTAACTACCGAA+GGG | - | chr1_3:55008747-55008766 | Msa0126090:intron | 45.0% | |
| !! | ATAGGAGTGTTCATGGGTGT+GGG | + | chr1_3:55008959-55008978 | None:intergenic | 45.0% |
| AAAGCGTGTAGAGAGAGCTT+GGG | - | chr1_3:55009122-55009141 | Msa0126090:intron | 45.0% | |
| !!! | GAGCCTTGTTTTGACGGTAT+TGG | - | chr1_3:55009246-55009265 | Msa0126090:intron | 45.0% |
| GTAGGTCAATTAAACCGGGA+CGG | + | chr1_3:55009339-55009358 | None:intergenic | 45.0% | |
| !! | ACGGAGGGAGTACTAGTTTA+TGG | - | chr1_3:55009550-55009569 | Msa0126090:intron | 45.0% |
| ! | GGGACGCAATGTTTCTAACT+TGG | + | chr1_3:55009928-55009947 | None:intergenic | 45.0% |
| TGGTCTCCATAGAATTCCGA+TGG | - | chr1_3:55010300-55010319 | Msa0126090:intron | 45.0% | |
| CACTTGCCATCGGAATTCTA+TGG | + | chr1_3:55010309-55010328 | None:intergenic | 45.0% | |
| ! | GTATCTGAGGTAGGATGAAG+AGG | - | chr1_3:55010469-55010488 | Msa0126090:intron | 45.0% |
| TAATCCCTTGACTAGTGCTC+TGG | - | chr1_3:55011791-55011810 | Msa0126090:intron | 45.0% | |
| AATCCCTTGACTAGTGCTCT+GGG | - | chr1_3:55011792-55011811 | Msa0126090:intron | 45.0% | |
| !! | TGAGAGAGTGTTCACCTGAA+AGG | + | chr1_3:55012812-55012831 | None:intergenic | 45.0% |
| TGTGACTGCAATCAAGTGCT+TGG | - | chr1_3:55013369-55013388 | Msa0126090:intron | 45.0% | |
| ACTGCAATCAAGTGCTTGGT+TGG | - | chr1_3:55013373-55013392 | Msa0126090:intron | 45.0% | |
| !! | TAAAGAATTAAATTTAATTA+AGG | + | chr1_3:55008565-55008584 | None:intergenic | 5.0% |
| !!! | TTAATTCTTTAATTATTTTA+TGG | - | chr1_3:55007986-55008005 | Msa0126090:intron | 5.0% |
| !! | TAAAGAATTAAATTTAATTA+AGG | - | chr1_3:55008565-55008584 | Msa0126090:intron | 5.0% |
| !!! | TATATTGTATTTTTTATATT+TGG | + | chr1_3:55010014-55010033 | None:intergenic | 5.0% |
| !!! | AATTTTCTTAAAAAAAATTT+GGG | + | chr1_3:55011156-55011175 | None:intergenic | 5.0% |
| !!! | AAATTTTCTTAAAAAAAATT+TGG | + | chr1_3:55011157-55011176 | None:intergenic | 5.0% |
| ! | GGTCTCGTAAGTTGACAAGG+GGG | - | chr1_3:55006979-55006998 | Msa0126090:intron | 50.0% |
| ! | TAAGTTGACAAGGGGGTGCA+GGG | - | chr1_3:55006986-55007005 | Msa0126090:intron | 50.0% |
| AACCCTCTAGATTCCAAGGG+AGG | - | chr1_3:55007182-55007201 | Msa0126090:intron | 50.0% | |
| ACCCTCTAGATTCCAAGGGA+GGG | - | chr1_3:55007183-55007202 | Msa0126090:intron | 50.0% | |
| GGGGACCCGATAATTTGAGT+TGG | - | chr1_3:55007204-55007223 | Msa0126090:intron | 50.0% | |
| ACTTCGGCAGTAAACTAGCG+AGG | - | chr1_3:55007856-55007875 | Msa0126090:intron | 50.0% | |
| ACTTCGGCAGTAAACTACCG+AGG | + | chr1_3:55008693-55008712 | None:intergenic | 50.0% | |
| TCGGCAGTTAACTACCGAAG+GGG | - | chr1_3:55008748-55008767 | Msa0126090:intron | 50.0% | |
| !! | GATAGGAGTGTTCATGGGTG+TGG | + | chr1_3:55008960-55008979 | None:intergenic | 50.0% |
| !! | TCGGGGATAGGAGTGTTCAT+GGG | + | chr1_3:55008965-55008984 | None:intergenic | 50.0% |
| !! | TTCGGGGATAGGAGTGTTCA+TGG | + | chr1_3:55008966-55008985 | None:intergenic | 50.0% |
| CGCTTTCGAATGCTACAACC+TGG | + | chr1_3:55009108-55009127 | None:intergenic | 50.0% | |
| ! | GAAAGCGTGTAGAGAGAGCT+TGG | - | chr1_3:55009121-55009140 | Msa0126090:intron | 50.0% |
| AGGCTCCTCATAACTGGTGT+TGG | + | chr1_3:55009232-55009251 | None:intergenic | 50.0% | |
| GTCAATTAAACCGGGACGGA+GGG | + | chr1_3:55009335-55009354 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr1_3:55009531-55009550 | Msa0126090:intron | 50.0% | |
| !! | TTGTGGATTGGTTCGCCACA+TGG | - | chr1_3:55010444-55010463 | Msa0126090:intron | 50.0% |
| CATGTTAACCATTGCCCCTG+AGG | - | chr1_3:55011655-55011674 | Msa0126090:intron | 50.0% | |
| ATCCCTTGACTAGTGCTCTG+GGG | - | chr1_3:55011793-55011812 | Msa0126090:intron | 50.0% | |
| TGCTTCCTTAACCAGTGTCC+CGG | - | chr1_3:55012076-55012095 | Msa0126090:intron | 50.0% | |
| AAATGTTAACCAGTGCCCCC+GGG | + | chr1_3:55011812-55011831 | None:intergenic | 50.0% | |
| GAAATGTTAACCAGTGCCCC+CGG | + | chr1_3:55012098-55012117 | None:intergenic | 50.0% | |
| CAACGGCTACATGAACAAGC+AGG | - | chr1_3:55012541-55012560 | Msa0126090:intron | 50.0% | |
| GAGCTCAACCCTTCACAAAG+TGG | + | chr1_3:55012690-55012709 | None:intergenic | 50.0% | |
| GAGTTGAACCTGGCCCCAAA+AGG | - | chr1_3:55006512-55006531 | Msa0126090:CDS | 55.0% | |
| TTGAACCTGGCCCCAAAAGG+AGG | - | chr1_3:55006515-55006534 | Msa0126090:CDS | 55.0% | |
| ! | TACGGGCAACGAGTTGGCAA+AGG | - | chr1_3:55006743-55006762 | Msa0126090:intron | 55.0% |
| ! | GTAAGTTGACAAGGGGGTGC+AGG | - | chr1_3:55006985-55007004 | Msa0126090:intron | 55.0% |
| ! | AAGTTGACAAGGGGGTGCAG+GGG | - | chr1_3:55006987-55007006 | Msa0126090:intron | 55.0% |
| CCCCTCCCTTGGAATCTAGA+GGG | + | chr1_3:55007187-55007206 | None:intergenic | 55.0% | |
| CCCTCTAGATTCCAAGGGAG+GGG | - | chr1_3:55007184-55007203 | Msa0126090:intron | 55.0% | |
| CCTCTAGATTCCAAGGGAGG+GGG | - | chr1_3:55007185-55007204 | Msa0126090:intron | 55.0% | |
| !! | GCTGTGAGGGAAGTATCGCA+TGG | - | chr1_3:55007226-55007245 | Msa0126090:intron | 55.0% |
| !! | TACACGGGTTGGGTTGGATC+CGG | - | chr1_3:55007301-55007320 | Msa0126090:intron | 55.0% |
| CCTCGGTAGTTAACTGCAGC+CGG | + | chr1_3:55008716-55008735 | None:intergenic | 55.0% | |
| ACTTCGGCAGTTAACTGCCG+AGG | - | chr1_3:55007889-55007908 | Msa0126090:intron | 55.0% | |
| ACTTCGGCAGTTAACTGCCG+AGG | + | chr1_3:55007889-55007908 | None:intergenic | 55.0% | |
| CCTCGGTAGTTAACTGCAGC+CGG | - | chr1_3:55008716-55008735 | Msa0126090:intron | 55.0% | |
| AGTTTGAGTCACCAGGTCCG+TGG | - | chr1_3:55008928-55008947 | Msa0126090:intron | 55.0% | |
| GTTTGAGTCACCAGGTCCGT+GGG | - | chr1_3:55008929-55008948 | Msa0126090:intron | 55.0% | |
| GGTCAATTAAACCGGGACGG+AGG | + | chr1_3:55009336-55009355 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr1_3:55009535-55009554 | Msa0126090:intron | 55.0% | |
| AACTAGTACTCCCTCCGTCC+CGG | + | chr1_3:55009548-55009567 | None:intergenic | 55.0% | |
| AACTAGTGCCTCAGGGGCAA+TGG | + | chr1_3:55011666-55011685 | None:intergenic | 55.0% | |
| TCCCTTGACTAGTGCTCTGG+GGG | - | chr1_3:55011794-55011813 | Msa0126090:intron | 55.0% | |
| TCATGTTAACCGGTGCCCCA+GGG | - | chr1_3:55011949-55011968 | Msa0126090:intron | 55.0% | |
| TTCCTTAACCAGTGCCCCTG+GGG | + | chr1_3:55011967-55011986 | None:intergenic | 55.0% | |
| CTTCCTTAACCAGTGCCCCT+GGG | + | chr1_3:55011968-55011987 | None:intergenic | 55.0% | |
| GCTTCCTTAACCAGTGTCCC+GGG | - | chr1_3:55012077-55012096 | Msa0126090:intron | 55.0% | |
| CTTCCTTAACCAGTGTCCCG+GGG | - | chr1_3:55012078-55012097 | Msa0126090:intron | 55.0% | |
| TTCCTTAACCAGTGTCCCGG+GGG | - | chr1_3:55012079-55012098 | Msa0126090:intron | 55.0% | |
| ACCTGGCCCCAAAAGGAGGT+AGG | - | chr1_3:55006519-55006538 | Msa0126090:CDS | 60.0% | |
| !!! | ACCTACCTCCTTTTGGGGCC+AGG | + | chr1_3:55006523-55006542 | None:intergenic | 60.0% |
| ! | AGTTGACAAGGGGGTGCAGG+GGG | - | chr1_3:55006988-55007007 | Msa0126090:intron | 60.0% |
| CCCCCTCCCTTGGAATCTAG+AGG | + | chr1_3:55007188-55007207 | None:intergenic | 60.0% | |
| ATTATCGGGTCCCCCTCCCT+TGG | + | chr1_3:55007198-55007217 | None:intergenic | 60.0% | |
| !! | AGGGTGTACACGGGTTGGGT+TGG | - | chr1_3:55007295-55007314 | Msa0126090:intron | 60.0% |
| CCGGCTGCAGTTAACTACCG+AGG | - | chr1_3:55007830-55007849 | Msa0126090:intron | 60.0% | |
| CCGGCTGCAGTTAACTACCG+AGG | + | chr1_3:55007830-55007849 | None:intergenic | 60.0% | |
| GCGTGTAGAGAGAGCTTGGG+TGG | - | chr1_3:55009125-55009144 | Msa0126090:intron | 60.0% | |
| CTAAGCTACTCCCTCCGTCC+CGG | - | chr1_3:55009322-55009341 | Msa0126090:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr1_3:55009534-55009553 | Msa0126090:intron | 60.0% | |
| ! | GCCCCCAGAGCACTAGTCAA+GGG | + | chr1_3:55011798-55011817 | None:intergenic | 60.0% |
| ! | TGCCCCCAGAGCACTAGTCA+AGG | + | chr1_3:55011799-55011818 | None:intergenic | 60.0% |
| GTCATGTTAACCGGTGCCCC+AGG | - | chr1_3:55011948-55011967 | Msa0126090:intron | 60.0% | |
| CATGTTAACCGGTGCCCCAG+GGG | - | chr1_3:55011950-55011969 | Msa0126090:intron | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+TGG | + | chr1_3:55011969-55011988 | None:intergenic | 60.0% | |
| CATGGGTGTGGGTCGACCCA+CGG | + | chr1_3:55008948-55008967 | None:intergenic | 65.0% | |
| !! | GACTAGTGCTCTGGGGGCAC+TGG | - | chr1_3:55011800-55011819 | Msa0126090:intron | 65.0% |
| !! | TGCCCCAGGGGCACTGGTTA+AGG | - | chr1_3:55011962-55011981 | Msa0126090:intron | 65.0% |
| ! | TGCCCCCGGGACACTGGTTA+AGG | + | chr1_3:55012084-55012103 | None:intergenic | 65.0% |
| TGTGGGTCGACCCACGGACC+TGG | + | chr1_3:55008942-55008961 | None:intergenic | 70.0% | |
| AACCAGTGCCCCTGGGGCAC+CGG | + | chr1_3:55011961-55011980 | None:intergenic | 70.0% | |
| ! | AACCAGTGTCCCGGGGGCAC+TGG | - | chr1_3:55012085-55012104 | Msa0126090:intron | 70.0% |
| AACCAGTGCCCCCGGGACAC+TGG | + | chr1_3:55012090-55012109 | None:intergenic | 70.0% | |
| ! | AACCGGTGCCCCAGGGGCAC+TGG | - | chr1_3:55011956-55011975 | Msa0126090:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 55006469 | 55013485 | 55006469 | ID=Msa0126090;Name=Msa0126090 |
| chr1_3 | mRNA | 55006469 | 55013485 | 55006469 | ID=Msa0126090-mRNA-1;Parent=Msa0126090;Name=Msa0126090-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|4|0|142 |
| chr1_3 | exon | 55013418 | 55013485 | 55013418 | ID=Msa0126090-mRNA-1:exon:17045;Parent=Msa0126090-mRNA-1 |
| chr1_3 | exon | 55010785 | 55010871 | 55010785 | ID=Msa0126090-mRNA-1:exon:17044;Parent=Msa0126090-mRNA-1 |
| chr1_3 | exon | 55007138 | 55007183 | 55007138 | ID=Msa0126090-mRNA-1:exon:17043;Parent=Msa0126090-mRNA-1 |
| chr1_3 | exon | 55006469 | 55006696 | 55006469 | ID=Msa0126090-mRNA-1:exon:17042;Parent=Msa0126090-mRNA-1 |
| chr1_3 | CDS | 55013418 | 55013485 | 55013418 | ID=Msa0126090-mRNA-1:cds;Parent=Msa0126090-mRNA-1 |
| chr1_3 | CDS | 55010785 | 55010871 | 55010785 | ID=Msa0126090-mRNA-1:cds;Parent=Msa0126090-mRNA-1 |
| chr1_3 | CDS | 55007138 | 55007183 | 55007138 | ID=Msa0126090-mRNA-1:cds;Parent=Msa0126090-mRNA-1 |
| chr1_3 | CDS | 55006469 | 55006696 | 55006469 | ID=Msa0126090-mRNA-1:cds;Parent=Msa0126090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
