Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078430 | sp|Q9T096|YIPL6_ARATH | 67.568 | 74 | 24 | 0 | 4 | 77 | 31 | 104 | 1.69e-35 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078430 | A0A396JQD0 | 98.684 | 76 | 1 | 0 | 4 | 79 | 31 | 106 | 2.10e-49 | 160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022640 | Msa0078430 | 0.804727 | 1.879779e-49 | -8.615850e-47 |
| Msa0031050 | Msa0078430 | 0.879668 | 1.032875e-69 | -8.615850e-47 |
| Msa0031090 | Msa0078430 | 0.904753 | 8.821748e-80 | -8.615850e-47 |
| Msa0078430 | Msa0126090 | 0.839614 | 1.425894e-57 | -8.615850e-47 |
| Msa0078430 | Msa0139720 | -0.818410 | 1.988965e-52 | -8.615850e-47 |
| Msa0078430 | Msa0141100 | 0.815139 | 1.077544e-51 | -8.615850e-47 |
| Msa0078430 | Msa0161680 | 0.800377 | 1.483024e-48 | -8.615850e-47 |
| Msa0078430 | Msa0171020 | 0.879413 | 1.271257e-69 | -8.615850e-47 |
| Msa0078430 | Msa0173990 | 0.826856 | 2.155557e-54 | -8.615850e-47 |
| Msa0078430 | Msa0191040 | 0.870700 | 1.196747e-66 | -8.615850e-47 |
| Msa0078430 | Msa0220300 | 0.847011 | 1.514851e-59 | -8.615850e-47 |
| Msa0078430 | Msa0233340 | 0.870669 | 1.225154e-66 | -8.615850e-47 |
| Msa0078430 | Msa0236440 | 0.823976 | 1.036036e-53 | -8.615850e-47 |
| Msa0078430 | Msa0251240 | 0.821015 | 5.053633e-53 | -8.615850e-47 |
| Msa0078430 | Msa0301200 | 0.825917 | 3.608767e-54 | -8.615850e-47 |
| Msa0078430 | Msa0311690 | 0.851901 | 6.562861e-61 | -8.615850e-47 |
| Msa0078430 | Msa0371540 | 0.808867 | 2.507809e-50 | -8.615850e-47 |
| Msa0078430 | Msa0372660 | 0.807846 | 4.140482e-50 | -8.615850e-47 |
| Msa0078430 | Msa0374850 | 0.811756 | 5.970754e-51 | -8.615850e-47 |
| Msa0078430 | Msa0419970 | 0.806269 | 8.929791e-50 | -8.615850e-47 |
| Msa0078430 | Msa0465930 | 0.813757 | 2.177757e-51 | -8.615850e-47 |
| Msa0078430 | Msa0465970 | 0.805714 | 1.168399e-49 | -8.615850e-47 |
| Msa0078430 | Msa0466060 | 0.813598 | 2.360366e-51 | -8.615850e-47 |
| Msa0078430 | Msa0470340 | 0.809817 | 1.568651e-50 | -8.615850e-47 |
| Msa0078430 | Msa0481110 | 0.807274 | 5.476897e-50 | -8.615850e-47 |
| Msa0078430 | Msa0485120 | 0.816130 | 6.481045e-52 | -8.615850e-47 |
| Msa0078430 | Msa0500360 | 0.800729 | 1.257456e-48 | -8.615850e-47 |
| Msa0078430 | Msa0517330 | 0.803435 | 3.490291e-49 | -8.615850e-47 |
| Msa0078430 | Msa0517340 | 0.810265 | 1.255908e-50 | -8.615850e-47 |
| Msa0078430 | Msa0531430 | 0.845454 | 4.020749e-59 | -8.615850e-47 |
| Msa0078430 | Msa0534570 | 0.836332 | 9.955124e-57 | -8.615850e-47 |
| Msa0078430 | Msa0534590 | 0.836450 | 9.289889e-57 | -8.615850e-47 |
| Msa0078430 | Msa0555950 | 0.825593 | 4.306661e-54 | -8.615850e-47 |
| Msa0078430 | Msa0590800 | 0.835997 | 1.211401e-56 | -8.615850e-47 |
| Msa0078430 | Msa0610370 | 0.828726 | 7.660102e-55 | -8.615850e-47 |
| Msa0078430 | Msa0611380 | 0.813926 | 1.998697e-51 | -8.615850e-47 |
| Msa0078430 | Msa0618290 | 0.810613 | 1.056379e-50 | -8.615850e-47 |
| Msa0078430 | Msa0628640 | 0.816247 | 6.102941e-52 | -8.615850e-47 |
| Msa0078430 | Msa0631120 | 0.847259 | 1.295078e-59 | -8.615850e-47 |
| Msa0078430 | Msa0650900 | 0.809602 | 1.744477e-50 | -8.615850e-47 |
| Msa0078430 | Msa0666030 | 0.817451 | 3.274959e-52 | -8.615850e-47 |
| Msa0078430 | Msa0669340 | 0.827077 | 1.909584e-54 | -8.615850e-47 |
| Msa0078430 | Msa0709500 | 0.810340 | 1.210280e-50 | -8.615850e-47 |
| Msa0078430 | Msa0716450 | 0.804284 | 2.325946e-49 | -8.615850e-47 |
| Msa0078430 | Msa0717260 | 0.817272 | 3.593327e-52 | -8.615850e-47 |
| Msa0078430 | Msa0724830 | 0.800490 | 1.406379e-48 | -8.615850e-47 |
| Msa0078430 | Msa0750430 | 0.829889 | 3.998773e-55 | -8.615850e-47 |
| Msa0078430 | Msa0758320 | 0.814810 | 1.274607e-51 | -8.615850e-47 |
| Msa0078430 | Msa0773610 | 0.820939 | 5.261543e-53 | -8.615850e-47 |
| Msa0078430 | Msa0790850 | 0.808637 | 2.808746e-50 | -8.615850e-47 |
| Msa0078430 | Msa0812820 | 0.804682 | 1.921539e-49 | -8.615850e-47 |
| Msa0078430 | Msa0837980 | 0.823442 | 1.382458e-53 | -8.615850e-47 |
| Msa0078430 | Msa0870620 | 0.813500 | 2.480562e-51 | -8.615850e-47 |
| Msa0078430 | Msa0944770 | 0.803056 | 4.183135e-49 | -8.615850e-47 |
| Msa0078430 | Msa1010110 | 0.815283 | 1.000864e-51 | -8.615850e-47 |
| Msa0078430 | Msa1034680 | 0.802207 | 6.259088e-49 | -8.615850e-47 |
| Msa0078430 | Msa1125760 | 0.819104 | 1.383607e-52 | -8.615850e-47 |
| Msa0078430 | Msa1132560 | -0.819094 | 1.391159e-52 | -8.615850e-47 |
| Msa0078430 | Msa1133710 | 0.801542 | 8.573577e-49 | -8.615850e-47 |
| Msa0078430 | Msa1171360 | 0.808026 | 3.791057e-50 | -8.615850e-47 |
| Msa0078430 | Msa1217940 | 0.816884 | 4.393749e-52 | -8.615850e-47 |
| Msa0078430 | Msa1233500 | 0.815941 | 7.141974e-52 | -8.615850e-47 |
| Msa0078430 | Msa1289280 | 0.804603 | 1.995943e-49 | -8.615850e-47 |
| Msa0078430 | Msa1342430 | 0.802638 | 5.102068e-49 | -8.615850e-47 |
| Msa0078430 | Msa1423450 | 0.807796 | 4.243602e-50 | -8.615850e-47 |
| Msa0078430 | Msa1424450 | 0.800162 | 1.640131e-48 | -8.615850e-47 |
| Msa0078430 | Msa1425010 | 0.812442 | 4.231168e-51 | -8.615850e-47 |
| Msa0078430 | Msa1440000 | 0.809805 | 1.578353e-50 | -8.615850e-47 |
| Msa0078430 | Msa1450020 | 0.800232 | 1.587256e-48 | -8.615850e-47 |
| Msa0078430 | Msa1460380 | 0.807418 | 5.104451e-50 | -8.615850e-47 |
| Msa0078430 | Msa1461280 | 0.812636 | 3.837989e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078430 | MtrunA17_Chr1g0188931 | 98.684 | 76 | 1 | 0 | 4 | 79 | 31 | 106 | 4.04e-53 | 160 |
| Msa0078430 | MtrunA17_Chr3g0127211 | 74.667 | 75 | 19 | 0 | 4 | 78 | 31 | 105 | 1.19e-38 | 124 |
| Msa0078430 | MtrunA17_Chr8g0346501 | 68.056 | 72 | 23 | 0 | 4 | 75 | 31 | 102 | 1.96e-33 | 110 |
| Msa0078430 | MtrunA17_Chr1g0188951 | 65.079 | 63 | 22 | 0 | 17 | 79 | 1 | 63 | 4.91e-27 | 93.2 |
| Msa0078430 | MtrunA17_Chr2g0316921 | 48.611 | 72 | 37 | 0 | 6 | 77 | 37 | 108 | 5.77e-25 | 90.1 |
| Msa0078430 | MtrunA17_Chr8g0360291 | 48.571 | 70 | 36 | 0 | 8 | 77 | 39 | 108 | 9.61e-24 | 87.0 |
| Msa0078430 | MtrunA17_Chr4g0046851 | 47.143 | 70 | 37 | 0 | 8 | 77 | 39 | 108 | 6.70e-23 | 84.7 |
| Msa0078430 | MtrunA17_Chr5g0436971 | 46.479 | 71 | 38 | 0 | 4 | 74 | 35 | 105 | 5.41e-22 | 82.4 |
| Msa0078430 | MtrunA17_Chr2g0316891 | 46.154 | 65 | 35 | 0 | 13 | 77 | 42 | 106 | 2.31e-21 | 80.9 |
| Msa0078430 | MtrunA17_Chr3g0113291 | 45.070 | 71 | 39 | 0 | 4 | 74 | 58 | 128 | 2.63e-21 | 81.3 |
| Msa0078430 | MtrunA17_Chr7g0242231 | 48.571 | 70 | 36 | 0 | 6 | 75 | 37 | 106 | 2.98e-21 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078430 | AT4G27745.2 | 67.568 | 74 | 24 | 0 | 4 | 77 | 31 | 104 | 1.72e-36 | 119 |
| Msa0078430 | AT4G27745.3 | 67.568 | 74 | 24 | 0 | 4 | 77 | 31 | 104 | 1.72e-36 | 119 |
| Msa0078430 | AT4G27745.1 | 67.568 | 74 | 24 | 0 | 4 | 77 | 31 | 104 | 1.72e-36 | 119 |
| Msa0078430 | AT4G27745.4 | 67.568 | 74 | 24 | 0 | 4 | 77 | 31 | 104 | 1.72e-36 | 119 |
| Msa0078430 | AT5G53940.1 | 45.833 | 72 | 39 | 0 | 6 | 77 | 37 | 108 | 4.76e-24 | 88.2 |
| Msa0078430 | AT4G27740.1 | 44.444 | 72 | 40 | 0 | 5 | 76 | 32 | 103 | 3.98e-22 | 82.4 |
| Msa0078430 | AT3G11230.1 | 49.296 | 71 | 36 | 0 | 4 | 74 | 35 | 105 | 5.75e-22 | 82.8 |
| Msa0078430 | AT3G08990.2 | 47.143 | 70 | 37 | 0 | 6 | 75 | 37 | 106 | 7.86e-22 | 82.4 |
| Msa0078430 | AT3G08990.1 | 47.143 | 70 | 37 | 0 | 6 | 75 | 37 | 106 | 7.86e-22 | 82.4 |
| Msa0078430 | AT3G08990.3 | 47.143 | 70 | 37 | 0 | 6 | 75 | 37 | 106 | 7.86e-22 | 82.4 |
| Msa0078430 | AT3G11230.2 | 49.296 | 71 | 36 | 0 | 4 | 74 | 68 | 138 | 1.22e-21 | 82.8 |
| Msa0078430 | AT3G11230.4 | 50.000 | 68 | 34 | 0 | 4 | 71 | 35 | 102 | 1.50e-21 | 80.9 |
| Msa0078430 | AT3G11230.3 | 50.000 | 68 | 34 | 0 | 4 | 71 | 68 | 135 | 3.59e-21 | 80.9 |
| Msa0078430 | AT3G55890.4 | 47.887 | 71 | 37 | 0 | 4 | 74 | 35 | 105 | 4.09e-21 | 80.5 |
| Msa0078430 | AT3G55890.1 | 47.887 | 71 | 37 | 0 | 4 | 74 | 35 | 105 | 4.09e-21 | 80.5 |
| Msa0078430 | AT3G55890.3 | 47.761 | 67 | 35 | 0 | 4 | 70 | 35 | 101 | 1.17e-20 | 78.6 |
| Msa0078430 | AT3G55890.2 | 47.761 | 67 | 35 | 0 | 4 | 70 | 35 | 101 | 1.17e-20 | 78.6 |
| Msa0078430 | AT2G40110.1 | 46.377 | 69 | 37 | 0 | 6 | 74 | 37 | 105 | 3.77e-20 | 78.2 |
| Msa0078430 | AT2G40110.2 | 45.455 | 66 | 36 | 0 | 6 | 71 | 37 | 102 | 2.44e-19 | 75.5 |
Find 18 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGAAGTCTAAAATTGTT+AGG | 0.250834 | 1_2:-55954809 | Msa0078430:CDS |
| ATGAATTCCATGTCTACTTT+TGG | 0.252538 | 1_2:+55954948 | None:intergenic |
| ATATAATTTCAGGGAAGAAA+TGG | 0.360217 | 1_2:-55955014 | Msa0078430:intron |
| CATGCAATGAATGTCACAAT+AGG | 0.409276 | 1_2:-55954972 | Msa0078430:CDS |
| TGAGAAGTCTAAAATTGTTA+GGG | 0.424108 | 1_2:-55954808 | Msa0078430:CDS |
| AGTAAACATCAGCAATTGTA+TGG | 0.440083 | 1_2:+55954916 | None:intergenic |
| ATGCAATGAATGTCACAATA+GGG | 0.486721 | 1_2:-55954971 | Msa0078430:CDS |
| TGTGACTGCAATCAAGTGCT+TGG | 0.515226 | 1_2:-55954891 | Msa0078430:CDS |
| ACTGCAATCAAGTGCTTGGT+TGG | 0.543372 | 1_2:-55954887 | Msa0078430:CDS |
| TTTCAGGGAAGAAATGGAAG+AGG | 0.547363 | 1_2:-55955008 | Msa0078430:intron |
| GAAGTTTGAGAGAGTCTATG+AGG | 0.548405 | 1_2:-55954865 | Msa0078430:CDS |
| GGATATTTGCTTGTTGTGTA+CGG | 0.556397 | 1_2:+55955780 | None:intergenic |
| GTAGACATGGAATTCATGAC+AGG | 0.597395 | 1_2:-55954942 | Msa0078430:CDS |
| TGAGGAAACTCAAAAGTACA+AGG | 0.598867 | 1_2:-55954847 | Msa0078430:CDS |
| AATAGGGCCAAAAGTAGACA+TGG | 0.602332 | 1_2:-55954955 | Msa0078430:CDS |
| GAAACTCAAAAGTACAAGGA+AGG | 0.606538 | 1_2:-55954843 | Msa0078430:CDS |
| TGAAGACAATCAATCATCAA+CGG | 0.627656 | 1_2:-55955736 | Msa0078430:five_prime_UTR |
| CAACGGCTACATGAACAAGC+AGG | 0.647684 | 1_2:-55955719 | Msa0078430:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTGAAATTGAATTAT+TGG | + | chr1_2:55954899-55954918 | None:intergenic | 10.0% |
| !! | AAATTATATATAAATGAACT+TGG | + | chr1_2:55955565-55955584 | None:intergenic | 10.0% |
| !! | TTCATTTATATATAATTTCA+GGG | - | chr1_2:55955567-55955586 | Msa0078430:intron | 10.0% |
| !!! | TAAATTTGAAATTGAATTAT+TGG | + | chr1_2:55954899-55954918 | None:intergenic | 10.0% |
| !! | AAATTATATATAAATGAACT+TGG | + | chr1_2:55955565-55955584 | None:intergenic | 10.0% |
| !! | TTCATTTATATATAATTTCA+GGG | - | chr1_2:55955567-55955586 | Msa0078430:intron | 10.0% |
| !!! | GTATCAAAAATTCTTTAAAA+TGG | + | chr1_2:55955282-55955301 | None:intergenic | 15.0% |
| !!! | TATAAGAACGTTATATATTT+TGG | - | chr1_2:55955487-55955506 | Msa0078430:intron | 15.0% |
| !! | CAATTTATAATAACATGTTT+AGG | - | chr1_2:55955523-55955542 | Msa0078430:intron | 15.0% |
| !! | GTTCATTTATATATAATTTC+AGG | - | chr1_2:55955566-55955585 | Msa0078430:intron | 15.0% |
| !!! | GTATCAAAAATTCTTTAAAA+TGG | + | chr1_2:55955282-55955301 | None:intergenic | 15.0% |
| !!! | TATAAGAACGTTATATATTT+TGG | - | chr1_2:55955487-55955506 | Msa0078430:intron | 15.0% |
| !! | CAATTTATAATAACATGTTT+AGG | - | chr1_2:55955523-55955542 | Msa0078430:intron | 15.0% |
| !! | GTTCATTTATATATAATTTC+AGG | - | chr1_2:55955566-55955585 | Msa0078430:intron | 15.0% |
| !! | TGAAATAATATCATCATGAA+GGG | + | chr1_2:55955115-55955134 | None:intergenic | 20.0% |
| !! | TTGAAATAATATCATCATGA+AGG | + | chr1_2:55955116-55955135 | None:intergenic | 20.0% |
| !! | TATTATTTCAAAAACCTTTC+AGG | - | chr1_2:55955125-55955144 | Msa0078430:intron | 20.0% |
| !! | AAAGAATACAAATCAAATGA+AGG | + | chr1_2:55955224-55955243 | None:intergenic | 20.0% |
| !!! | ATACAATGAAAGTATGAAAA+TGG | + | chr1_2:55955308-55955327 | None:intergenic | 20.0% |
| !! | TGAAATAATATCATCATGAA+GGG | + | chr1_2:55955115-55955134 | None:intergenic | 20.0% |
| !! | TTGAAATAATATCATCATGA+AGG | + | chr1_2:55955116-55955135 | None:intergenic | 20.0% |
| !! | TATTATTTCAAAAACCTTTC+AGG | - | chr1_2:55955125-55955144 | Msa0078430:intron | 20.0% |
| !! | AAAGAATACAAATCAAATGA+AGG | + | chr1_2:55955224-55955243 | None:intergenic | 20.0% |
| !!! | ATACAATGAAAGTATGAAAA+TGG | + | chr1_2:55955308-55955327 | None:intergenic | 20.0% |
| !!! | ATTATGCAAGTTTTGTTTTG+AGG | + | chr1_2:55954834-55954853 | None:intergenic | 25.0% |
| ! | TTCCAAATCTTAATAGAGAA+AGG | + | chr1_2:55955165-55955184 | None:intergenic | 25.0% |
| ! | TCACAAAAGTTGTCTAAAAA+TGG | - | chr1_2:55955383-55955402 | Msa0078430:intron | 25.0% |
| ! | ATATAATTTCAGGGAAGAAA+TGG | - | chr1_2:55955576-55955595 | Msa0078430:intron | 25.0% |
| !! | TTGAGAAGTCTAAAATTGTT+AGG | - | chr1_2:55955781-55955800 | Msa0078430:five_prime_UTR | 25.0% |
| !! | TGAGAAGTCTAAAATTGTTA+GGG | - | chr1_2:55955782-55955801 | Msa0078430:five_prime_UTR | 25.0% |
| !!! | ATTATGCAAGTTTTGTTTTG+AGG | + | chr1_2:55954834-55954853 | None:intergenic | 25.0% |
| ! | TTCCAAATCTTAATAGAGAA+AGG | + | chr1_2:55955165-55955184 | None:intergenic | 25.0% |
| ! | TCACAAAAGTTGTCTAAAAA+TGG | - | chr1_2:55955383-55955402 | Msa0078430:intron | 25.0% |
| ! | ATATAATTTCAGGGAAGAAA+TGG | - | chr1_2:55955576-55955595 | Msa0078430:intron | 25.0% |
| !! | TTGAGAAGTCTAAAATTGTT+AGG | - | chr1_2:55955781-55955800 | Msa0078430:five_prime_UTR | 25.0% |
| !! | TGAGAAGTCTAAAATTGTTA+GGG | - | chr1_2:55955782-55955801 | Msa0078430:five_prime_UTR | 25.0% |
| TGAAGACAATCAATCATCAA+CGG | - | chr1_2:55954854-55954873 | Msa0078430:CDS | 30.0% | |
| ATATGATGATTATCTGCGTT+TGG | - | chr1_2:55954968-55954987 | Msa0078430:CDS | 30.0% | |
| !! | TTTTATAGCCACTTTGTGAA+GGG | - | chr1_2:55955009-55955028 | Msa0078430:intron | 30.0% |
| !! | AGCTCATAAAAGCTTTGAAA+TGG | - | chr1_2:55955035-55955054 | Msa0078430:intron | 30.0% |
| ! | TTTGAAATGGAGAGTTTGAT+TGG | - | chr1_2:55955048-55955067 | Msa0078430:intron | 30.0% |
| CACCTTTCTCTATTAAGATT+TGG | - | chr1_2:55955160-55955179 | Msa0078430:intron | 30.0% | |
| ATCAACACAGTATAAACATG+TGG | - | chr1_2:55955194-55955213 | Msa0078430:intron | 30.0% | |
| ! | GCACATGTGTTAGAATTTTT+GGG | + | chr1_2:55955458-55955477 | None:intergenic | 30.0% |
| ! | TGCACATGTGTTAGAATTTT+TGG | + | chr1_2:55955459-55955478 | None:intergenic | 30.0% |
| ATGCAATGAATGTCACAATA+GGG | - | chr1_2:55955619-55955638 | Msa0078430:intron | 30.0% | |
| ! | ATGAATTCCATGTCTACTTT+TGG | + | chr1_2:55955645-55955664 | None:intergenic | 30.0% |
| AGTAAACATCAGCAATTGTA+TGG | + | chr1_2:55955677-55955696 | None:intergenic | 30.0% | |
| TGAAGACAATCAATCATCAA+CGG | - | chr1_2:55954854-55954873 | Msa0078430:CDS | 30.0% | |
| ATATGATGATTATCTGCGTT+TGG | - | chr1_2:55954968-55954987 | Msa0078430:CDS | 30.0% | |
| !! | TTTTATAGCCACTTTGTGAA+GGG | - | chr1_2:55955009-55955028 | Msa0078430:intron | 30.0% |
| !! | AGCTCATAAAAGCTTTGAAA+TGG | - | chr1_2:55955035-55955054 | Msa0078430:intron | 30.0% |
| ! | TTTGAAATGGAGAGTTTGAT+TGG | - | chr1_2:55955048-55955067 | Msa0078430:intron | 30.0% |
| CACCTTTCTCTATTAAGATT+TGG | - | chr1_2:55955160-55955179 | Msa0078430:intron | 30.0% | |
| ATCAACACAGTATAAACATG+TGG | - | chr1_2:55955194-55955213 | Msa0078430:intron | 30.0% | |
| ! | GCACATGTGTTAGAATTTTT+GGG | + | chr1_2:55955458-55955477 | None:intergenic | 30.0% |
| ! | TGCACATGTGTTAGAATTTT+TGG | + | chr1_2:55955459-55955478 | None:intergenic | 30.0% |
| ATGCAATGAATGTCACAATA+GGG | - | chr1_2:55955619-55955638 | Msa0078430:intron | 30.0% | |
| ! | ATGAATTCCATGTCTACTTT+TGG | + | chr1_2:55955645-55955664 | None:intergenic | 30.0% |
| AGTAAACATCAGCAATTGTA+TGG | + | chr1_2:55955677-55955696 | None:intergenic | 30.0% | |
| !! | GGATATTTGCTTGTTGTGTA+CGG | + | chr1_2:55954813-55954832 | None:intergenic | 35.0% |
| TCACAAAGTGGCTATAAAAC+TGG | + | chr1_2:55955008-55955027 | None:intergenic | 35.0% | |
| !! | GTTTTATAGCCACTTTGTGA+AGG | - | chr1_2:55955008-55955027 | Msa0078430:intron | 35.0% |
| CATGCAATGAATGTCACAAT+AGG | - | chr1_2:55955618-55955637 | Msa0078430:intron | 35.0% | |
| ! | TGAGGAAACTCAAAAGTACA+AGG | - | chr1_2:55955743-55955762 | Msa0078430:five_prime_UTR | 35.0% |
| ! | GAAACTCAAAAGTACAAGGA+AGG | - | chr1_2:55955747-55955766 | Msa0078430:five_prime_UTR | 35.0% |
| ATTGTTAGGGAAAGCTTGTA+AGG | - | chr1_2:55955795-55955814 | Msa0078430:five_prime_UTR | 35.0% | |
| !! | GGATATTTGCTTGTTGTGTA+CGG | + | chr1_2:55954813-55954832 | None:intergenic | 35.0% |
| TCACAAAGTGGCTATAAAAC+TGG | + | chr1_2:55955008-55955027 | None:intergenic | 35.0% | |
| !! | GTTTTATAGCCACTTTGTGA+AGG | - | chr1_2:55955008-55955027 | Msa0078430:intron | 35.0% |
| CATGCAATGAATGTCACAAT+AGG | - | chr1_2:55955618-55955637 | Msa0078430:intron | 35.0% | |
| ! | TGAGGAAACTCAAAAGTACA+AGG | - | chr1_2:55955743-55955762 | Msa0078430:five_prime_UTR | 35.0% |
| ! | GAAACTCAAAAGTACAAGGA+AGG | - | chr1_2:55955747-55955766 | Msa0078430:five_prime_UTR | 35.0% |
| TATCATCATGAAGGGCAACA+TGG | + | chr1_2:55955107-55955126 | None:intergenic | 40.0% | |
| TTTCAGGGAAGAAATGGAAG+AGG | - | chr1_2:55955582-55955601 | Msa0078430:intron | 40.0% | |
| AATAGGGCCAAAAGTAGACA+TGG | - | chr1_2:55955635-55955654 | Msa0078430:intron | 40.0% | |
| GTAGACATGGAATTCATGAC+AGG | - | chr1_2:55955648-55955667 | Msa0078430:intron | 40.0% | |
| GAAGTTTGAGAGAGTCTATG+AGG | - | chr1_2:55955725-55955744 | Msa0078430:exon | 40.0% | |
| TATCATCATGAAGGGCAACA+TGG | + | chr1_2:55955107-55955126 | None:intergenic | 40.0% | |
| TTTCAGGGAAGAAATGGAAG+AGG | - | chr1_2:55955582-55955601 | Msa0078430:intron | 40.0% | |
| AATAGGGCCAAAAGTAGACA+TGG | - | chr1_2:55955635-55955654 | Msa0078430:intron | 40.0% | |
| GTAGACATGGAATTCATGAC+AGG | - | chr1_2:55955648-55955667 | Msa0078430:intron | 40.0% | |
| GAAGTTTGAGAGAGTCTATG+AGG | - | chr1_2:55955725-55955744 | Msa0078430:exon | 40.0% | |
| !! | TGAGAGAGTGTTCACCTGAA+AGG | + | chr1_2:55955142-55955161 | None:intergenic | 45.0% |
| TGTGACTGCAATCAAGTGCT+TGG | - | chr1_2:55955699-55955718 | Msa0078430:intron | 45.0% | |
| ACTGCAATCAAGTGCTTGGT+TGG | - | chr1_2:55955703-55955722 | Msa0078430:intron | 45.0% | |
| !! | TGAGAGAGTGTTCACCTGAA+AGG | + | chr1_2:55955142-55955161 | None:intergenic | 45.0% |
| TGTGACTGCAATCAAGTGCT+TGG | - | chr1_2:55955699-55955718 | Msa0078430:intron | 45.0% | |
| ACTGCAATCAAGTGCTTGGT+TGG | - | chr1_2:55955703-55955722 | Msa0078430:intron | 45.0% | |
| CAACGGCTACATGAACAAGC+AGG | - | chr1_2:55954871-55954890 | Msa0078430:CDS | 50.0% | |
| GAGCTCAACCCTTCACAAAG+TGG | + | chr1_2:55955020-55955039 | None:intergenic | 50.0% | |
| CAACGGCTACATGAACAAGC+AGG | - | chr1_2:55954871-55954890 | Msa0078430:CDS | 50.0% | |
| GAGCTCAACCCTTCACAAAG+TGG | + | chr1_2:55955020-55955039 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 55954797 | 55955815 | 55954797 | ID=Msa0078430;Name=Msa0078430 |
| chr1_2 | mRNA | 55954797 | 55955815 | 55954797 | ID=Msa0078430-mRNA-1;Parent=Msa0078430;Name=Msa0078430-mRNA-1;_AED=0.32;_eAED=0.32;_QI=84|0|0.5|1|1|1|2|0|79 |
| chr1_2 | exon | 55954797 | 55955024 | 55954797 | ID=Msa0078430-mRNA-1:exon:17458;Parent=Msa0078430-mRNA-1 |
| chr1_2 | exon | 55955720 | 55955815 | 55955720 | ID=Msa0078430-mRNA-1:exon:17457;Parent=Msa0078430-mRNA-1 |
| chr1_2 | five_prime_UTR | 55955732 | 55955815 | 55955732 | ID=Msa0078430-mRNA-1:five_prime_utr;Parent=Msa0078430-mRNA-1 |
| chr1_2 | CDS | 55955720 | 55955731 | 55955720 | ID=Msa0078430-mRNA-1:cds;Parent=Msa0078430-mRNA-1 |
| chr1_2 | CDS | 55954797 | 55955024 | 55954797 | ID=Msa0078430-mRNA-1:cds;Parent=Msa0078430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
