Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128170 | XP_003591407.1 | 96.966 | 791 | 6 | 2 | 1 | 791 | 1 | 773 | 0.0 | 1561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128170 | sp|Q0WQ75|VPS51_ARATH | 64.375 | 800 | 241 | 11 | 9 | 791 | 8 | 780 | 0.0 | 1014 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128170 | G7IDQ8 | 96.966 | 791 | 6 | 2 | 1 | 791 | 1 | 773 | 0.0 | 1561 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028340 | Msa0128170 | 0.808515 | 2.982537e-50 | -8.615850e-47 |
| Msa0089980 | Msa0128170 | 0.804992 | 1.655118e-49 | -8.615850e-47 |
| Msa0090010 | Msa0128170 | 0.805809 | 1.115577e-49 | -8.615850e-47 |
| Msa0128170 | Msa0168570 | 0.804813 | 1.803879e-49 | -8.615850e-47 |
| Msa0128170 | Msa0379610 | 0.849155 | 3.877273e-60 | -8.615850e-47 |
| Msa0128170 | Msa0428970 | 0.836020 | 1.195083e-56 | -8.615850e-47 |
| Msa0128170 | Msa0432170 | 0.805853 | 1.092035e-49 | -8.615850e-47 |
| Msa0128170 | Msa0475450 | 0.834796 | 2.436575e-56 | -8.615850e-47 |
| Msa0128170 | Msa0476690 | 0.811796 | 5.853448e-51 | -8.615850e-47 |
| Msa0128170 | Msa0703220 | 0.804837 | 1.783234e-49 | -8.615850e-47 |
| Msa0128170 | Msa0800700 | 0.800959 | 1.128219e-48 | -8.615850e-47 |
| Msa0128170 | Msa1027990 | 0.812332 | 4.471437e-51 | -8.615850e-47 |
| Msa0128170 | Msa1155900 | 0.816809 | 4.565406e-52 | -8.615850e-47 |
| Msa0128170 | Msa1205790 | 0.811852 | 5.689500e-51 | -8.615850e-47 |
| Msa0128170 | Msa1267040 | 0.831694 | 1.443852e-55 | -8.615850e-47 |
| Msa0128170 | Msa1267170 | 0.833971 | 3.924974e-56 | -8.615850e-47 |
| Msa0128170 | Msa1446780 | 0.806898 | 6.578752e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128170 | MtrunA17_Chr1g0194711 | 96.207 | 791 | 5 | 3 | 1 | 791 | 1 | 766 | 0.0 | 1540 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128170 | AT4G02030.1 | 64.375 | 800 | 241 | 11 | 9 | 791 | 8 | 780 | 0.0 | 1014 |
| Msa0128170 | AT4G02030.2 | 62.424 | 825 | 241 | 12 | 9 | 791 | 8 | 805 | 0.0 | 999 |
Find 163 sgRNAs with CRISPR-Local
Find 638 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTATTTCCCTTATA+GGG | 0.151677 | 1_3:-57804732 | None:intergenic |
| TCTTCAACTATTTCCCTTAT+AGG | 0.173079 | 1_3:-57804733 | None:intergenic |
| CATCTTCTGCAAGACATTTC+AGG | 0.175998 | 1_3:+57802423 | Msa0128170:CDS |
| GAAGGTTTATAAATCGAATT+TGG | 0.209971 | 1_3:+57796418 | Msa0128170:intron |
| ATCCACTTCGATTAAAAGTT+TGG | 0.231217 | 1_3:-57804672 | None:intergenic |
| TCATCGAGAGAAGCGTATTT+AGG | 0.234180 | 1_3:-57796269 | None:intergenic |
| AAGGGCAAGGAGCCAGCTTC+TGG | 0.249954 | 1_3:+57804417 | Msa0128170:CDS |
| TTTCTTACAAGTCCTGAAAA+AGG | 0.250474 | 1_3:+57802749 | Msa0128170:CDS |
| AAGAGAGTTATTTGTTGATT+TGG | 0.273495 | 1_3:+57803045 | Msa0128170:CDS |
| TGCTCTTCTAGTGATATTTC+CGG | 0.275316 | 1_3:+57801065 | Msa0128170:CDS |
| AATTATTTCTTCCTGAAAAT+AGG | 0.291970 | 1_3:-57803117 | None:intergenic |
| CATCACAACAGAGTTCAAAA+TGG | 0.315642 | 1_3:+57796136 | Msa0128170:exon |
| GATCAAATTTGCTCAAGATT+TGG | 0.317279 | 1_3:+57801104 | Msa0128170:CDS |
| TCCATTGGAGCCTCCTATAC+TGG | 0.319337 | 1_3:+57804980 | Msa0128170:CDS |
| GGCAGCAACTCATGAATTTA+TGG | 0.320539 | 1_3:+57801032 | Msa0128170:intron |
| AGTTCCTAAGGACCCCTATA+AGG | 0.323442 | 1_3:+57804719 | Msa0128170:CDS |
| ATCTAGACCTGCATTTGTTC+CGG | 0.333083 | 1_3:+57803426 | Msa0128170:CDS |
| CATCGAGAGAAGCGTATTTA+GGG | 0.343440 | 1_3:-57796268 | None:intergenic |
| TGGAATCAAGAACAGCTTCT+AGG | 0.343664 | 1_3:-57802791 | None:intergenic |
| AGAGGTTTACAACACCGAAT+TGG | 0.358846 | 1_3:+57803914 | Msa0128170:CDS |
| GGTGAATTGAAAAGCTAAAC+TGG | 0.359898 | 1_3:-57796072 | None:intergenic |
| AGGATGAAAAGTAACATTTC+AGG | 0.360428 | 1_3:+57796758 | Msa0128170:intron |
| ATGCACTTGCCAAGTCTATC+AGG | 0.360884 | 1_3:-57797327 | None:intergenic |
| TAATCTTCTTCGCAAAGTTC+AGG | 0.361843 | 1_3:+57797052 | Msa0128170:CDS |
| TGAACCATTGTTTATTTCCT+CGG | 0.362479 | 1_3:-57800207 | None:intergenic |
| TGATATTTACAGGAGTTGTC+TGG | 0.363716 | 1_3:+57802186 | Msa0128170:intron |
| ACTTCTTGCTTGATGAGGTT+GGG | 0.365195 | 1_3:+57804770 | Msa0128170:CDS |
| TCCTGGCCTTGTCCTAGTGC+TGG | 0.365219 | 1_3:+57803195 | Msa0128170:CDS |
| ATCAAGAAGCAATCCCTTGC+GGG | 0.367586 | 1_3:+57804366 | Msa0128170:CDS |
| TTCAGGGATGGAGACTAATA+TGG | 0.378226 | 1_3:+57796775 | Msa0128170:CDS |
| GGATATCCAGTTGAATTTGT+TGG | 0.381501 | 1_3:-57804696 | None:intergenic |
| GTGTTGTAAACCTCTTCTTC+AGG | 0.383008 | 1_3:-57803906 | None:intergenic |
| AGAACACCGAGTAAATCTTC+TGG | 0.386716 | 1_3:-57801269 | None:intergenic |
| CGATCAATACATGAACATTC+TGG | 0.387356 | 1_3:+57796316 | Msa0128170:CDS |
| GATCGCGGAGTTGGAGGAAT+TGG | 0.391664 | 1_3:-57796240 | None:intergenic |
| TCCTCTTTCTATCAGGCATA+TGG | 0.393277 | 1_3:+57797509 | Msa0128170:intron |
| ATAGGAGGCTCCAATGGAAT+TGG | 0.395022 | 1_3:-57804975 | None:intergenic |
| CCTAGTGCTGGCACAATTGT+CGG | 0.395692 | 1_3:+57803207 | Msa0128170:CDS |
| CTAGATGTGTTTCCAGAAGC+TGG | 0.396388 | 1_3:-57804429 | None:intergenic |
| GAGAAATCTGTAGAAAATTC+CGG | 0.399984 | 1_3:+57803449 | Msa0128170:CDS |
| TCTAGACCTGCATTTGTTCC+GGG | 0.403764 | 1_3:+57803427 | Msa0128170:CDS |
| TCAGGATAAGTGAAATCCTC+TGG | 0.410654 | 1_3:-57803888 | None:intergenic |
| GAGGTTTACAACACCGAATT+GGG | 0.410869 | 1_3:+57803915 | Msa0128170:CDS |
| CCGGAAAATCCAACTGCTTA+AGG | 0.413095 | 1_3:-57799449 | None:intergenic |
| ACACTTCTCTATTTGACAAA+AGG | 0.414313 | 1_3:+57797000 | Msa0128170:CDS |
| TTTCCCTTATAGGGGTCCTT+AGG | 0.415796 | 1_3:-57804723 | None:intergenic |
| GACTTCTTGCTTGATGAGGT+TGG | 0.416635 | 1_3:+57804769 | Msa0128170:CDS |
| TGGTTAGAGAGAGCTGCTTC+TGG | 0.419415 | 1_3:-57802239 | None:intergenic |
| TCGTAGAATTAGTGATGGTT+TGG | 0.419478 | 1_3:+57805172 | Msa0128170:three_prime_UTR |
| AACTCTAAATTTCTTAACAT+TGG | 0.420169 | 1_3:-57805367 | None:intergenic |
| ATGTTAAGAAATTTAGAGTT+CGG | 0.422735 | 1_3:+57805370 | Msa0128170:three_prime_UTR |
| TACAACACCGAATTGGGTTA+AGG | 0.424939 | 1_3:+57803921 | Msa0128170:CDS |
| TCCCTTGCGGGAGGAGAAGT+TGG | 0.427620 | 1_3:+57804378 | Msa0128170:CDS |
| AGCTATTCAAGTACATGGTT+TGG | 0.427838 | 1_3:+57803144 | Msa0128170:CDS |
| TTGGAGGAATTGGAAGGGTC+TGG | 0.427864 | 1_3:-57796230 | None:intergenic |
| GAACCATTGTTTATTTCCTC+GGG | 0.432864 | 1_3:-57800206 | None:intergenic |
| CTGGTAAGACTTCATCTATC+AGG | 0.435374 | 1_3:-57802220 | None:intergenic |
| TGGATTCCAACAAATTCAAC+TGG | 0.439659 | 1_3:+57804690 | Msa0128170:CDS |
| GAGGAAATAAACAATGGTTC+AGG | 0.440575 | 1_3:+57800209 | Msa0128170:CDS |
| TTATAGGGGTCCTTAGGAAC+TGG | 0.440883 | 1_3:-57804717 | None:intergenic |
| TCCTCAGCTATTCAAGTACA+TGG | 0.446202 | 1_3:+57803139 | Msa0128170:CDS |
| TCTTGCTATGATCTGTGAAA+TGG | 0.446610 | 1_3:-57796093 | None:intergenic |
| AAATTTAGAGTTCGGAGAAT+CGG | 0.455766 | 1_3:+57805378 | Msa0128170:three_prime_UTR |
| CAAACTTGTACAAGCAAAGT+TGG | 0.456417 | 1_3:+57805004 | Msa0128170:CDS |
| ATTTCTTAACATTGGACAAA+AGG | 0.458568 | 1_3:-57805359 | None:intergenic |
| GTTCCTAAGGACCCCTATAA+GGG | 0.461615 | 1_3:+57804720 | Msa0128170:CDS |
| CAGAATGTTCATGTATTGAT+CGG | 0.469227 | 1_3:-57796315 | None:intergenic |
| GGAATCAAGAACAGCTTCTA+GGG | 0.470050 | 1_3:-57802790 | None:intergenic |
| AGGCTGACCTTAACCCAATT+CGG | 0.471401 | 1_3:-57803928 | None:intergenic |
| AGGAGGCATGAACGTCTTGC+TGG | 0.471550 | 1_3:+57802833 | Msa0128170:CDS |
| TTGGCAATTGATTGTTAACT+TGG | 0.476905 | 1_3:+57805191 | Msa0128170:three_prime_UTR |
| TGCTGTGCTCCTTAAGCAGT+TGG | 0.478591 | 1_3:+57799440 | Msa0128170:CDS |
| CCGACAATTGTGCCAGCACT+AGG | 0.481310 | 1_3:-57803207 | None:intergenic |
| CAAGTACATGGTTTGGCAGA+AGG | 0.482862 | 1_3:+57803151 | Msa0128170:CDS |
| TTTGTTGATTTGGTTCAAGA+AGG | 0.483059 | 1_3:+57803055 | Msa0128170:CDS |
| CCCTTGCGGGAGGAGAAGTT+GGG | 0.483687 | 1_3:+57804379 | Msa0128170:CDS |
| ACTTCAACGACATGTTGAAA+TGG | 0.484246 | 1_3:+57796448 | Msa0128170:CDS |
| AGGGTCTGGAGAGTAGAAAC+TGG | 0.485286 | 1_3:-57796216 | None:intergenic |
| TGTATTTATATCAGCAGGTC+GGG | 0.488709 | 1_3:-57805089 | None:intergenic |
| TGTACAAGTTTGTCCAGTAT+AGG | 0.489895 | 1_3:-57804993 | None:intergenic |
| AGGCGTATGCAGACGCAGTC+AGG | 0.490139 | 1_3:+57797358 | Msa0128170:CDS |
| AGGGGAAGTGATCGCGGAGT+TGG | 0.490496 | 1_3:-57796249 | None:intergenic |
| AAACGTGTATTTATATCAGC+AGG | 0.492562 | 1_3:-57805094 | None:intergenic |
| TCTAACACTACCACCAGAAA+AGG | 0.496688 | 1_3:-57803395 | None:intergenic |
| GAACACCGAGTAAATCTTCT+GGG | 0.497513 | 1_3:-57801268 | None:intergenic |
| AATGAATAACCTCAAGAGAA+TGG | 0.498087 | 1_3:-57802259 | None:intergenic |
| ATCACAACAGAGTTCAAAAT+GGG | 0.505526 | 1_3:+57796137 | Msa0128170:exon |
| TGTAGAAAATTCCGGTCAGC+TGG | 0.506209 | 1_3:+57803457 | Msa0128170:CDS |
| GGATGAAAAGTAACATTTCA+GGG | 0.506373 | 1_3:+57796759 | Msa0128170:intron |
| CACTTCTCTATTTGACAAAA+GGG | 0.511687 | 1_3:+57797001 | Msa0128170:CDS |
| GGAAGTGATCGCGGAGTTGG+AGG | 0.513715 | 1_3:-57796246 | None:intergenic |
| AGAATGTTCATGTATTGATC+GGG | 0.516406 | 1_3:-57796314 | None:intergenic |
| AGCAAAGTTGGCTAAAACCA+AGG | 0.519616 | 1_3:+57805016 | Msa0128170:CDS |
| TTCAACTATTTCCCTTATAG+GGG | 0.520741 | 1_3:-57804731 | None:intergenic |
| ATATGGAGATTCATCATTCA+AGG | 0.525968 | 1_3:+57797526 | Msa0128170:CDS |
| ACAAACATGTGCACTTCTCT+CGG | 0.527354 | 1_3:-57804038 | None:intergenic |
| ATTTCTCCCGGAACAAATGC+AGG | 0.529783 | 1_3:-57803433 | None:intergenic |
| GCTCAGCTGAATGTCTGTAA+TGG | 0.530945 | 1_3:-57800183 | None:intergenic |
| GTTTATAAATCGAATTTGGA+AGG | 0.532058 | 1_3:+57796422 | Msa0128170:CDS |
| GATATTTACAGGAGTTGTCT+GGG | 0.534454 | 1_3:+57802187 | Msa0128170:intron |
| GATATATGTTACAAGTTACA+AGG | 0.537032 | 1_3:-57805239 | None:intergenic |
| GAGAAGATGCTGAAGGAGAA+AGG | 0.538349 | 1_3:-57800235 | None:intergenic |
| GTGTCTTGATCCAATTCCAT+TGG | 0.539009 | 1_3:+57804965 | Msa0128170:CDS |
| AACTGGATATCCAGTTCCTA+AGG | 0.540797 | 1_3:+57804707 | Msa0128170:CDS |
| GGGTAGGTCAAATACTCAAA+GGG | 0.544064 | 1_3:+57804399 | Msa0128170:CDS |
| ACCCAACTTCTCCTCCCGCA+AGG | 0.545104 | 1_3:-57804380 | None:intergenic |
| GCCAGCACTAGGACAAGGCC+AGG | 0.546060 | 1_3:-57803196 | None:intergenic |
| TTCGATTAAAAGTTTGGAGA+CGG | 0.551357 | 1_3:-57804666 | None:intergenic |
| GAAAAGTAACATTTCAGGGA+TGG | 0.551848 | 1_3:+57796763 | Msa0128170:CDS |
| TATTTCTTCCTGAAAATAGG+AGG | 0.552504 | 1_3:-57803114 | None:intergenic |
| CTTGAAAGCATACCAGGTGC+AGG | 0.556507 | 1_3:-57803489 | None:intergenic |
| TCCAGTATAGGAGGCTCCAA+TGG | 0.562674 | 1_3:-57804981 | None:intergenic |
| AAGGTATACGTAAGCACCGC+AGG | 0.565472 | 1_3:+57804317 | Msa0128170:CDS |
| TGGGTAGGTCAAATACTCAA+AGG | 0.566001 | 1_3:+57804398 | Msa0128170:CDS |
| TCTCTCTAACCATTCTCTTG+AGG | 0.566962 | 1_3:+57802250 | Msa0128170:CDS |
| TTTCACTTATCCTGAAGAAG+AGG | 0.570507 | 1_3:+57803896 | Msa0128170:CDS |
| TCCTTCAGCATCTTCTCACA+AGG | 0.574342 | 1_3:+57800241 | Msa0128170:CDS |
| ATCTTTCGTAGAATTAGTGA+TGG | 0.575664 | 1_3:+57805167 | Msa0128170:three_prime_UTR |
| ACAAGTTTGTCCAGTATAGG+AGG | 0.576530 | 1_3:-57804990 | None:intergenic |
| CTTAAGTCTCGACACAAGAT+CGG | 0.581339 | 1_3:-57805313 | None:intergenic |
| TATGATCTTCCTGATAGACT+TGG | 0.583092 | 1_3:+57797318 | Msa0128170:CDS |
| CAATAAGTTCATCAGCGCTA+CGG | 0.585400 | 1_3:+57796526 | Msa0128170:CDS |
| CAGGATAAGTGAAATCCTCT+GGG | 0.586086 | 1_3:-57803887 | None:intergenic |
| GGTTGACTTCTTGCTTGATG+AGG | 0.587881 | 1_3:+57804765 | Msa0128170:CDS |
| GCGGAGTTGGAGGAATTGGA+AGG | 0.588452 | 1_3:-57796236 | None:intergenic |
| CCCAACTTCTCCTCCCGCAA+GGG | 0.588561 | 1_3:-57804379 | None:intergenic |
| GTATTTAGGGGAAGTGATCG+CGG | 0.602805 | 1_3:-57796255 | None:intergenic |
| GTGTATTTATATCAGCAGGT+CGG | 0.606462 | 1_3:-57805090 | None:intergenic |
| CATCAAGAAGCAATCCCTTG+CGG | 0.609700 | 1_3:+57804365 | Msa0128170:CDS |
| ACACTGACATTTCTGATCGA+AGG | 0.613695 | 1_3:+57796570 | Msa0128170:CDS |
| ACCATGTACTTGAATAGCTG+AGG | 0.613701 | 1_3:-57803140 | None:intergenic |
| AGATAATGTCTGTTCAGTCA+AGG | 0.615990 | 1_3:+57796964 | Msa0128170:intron |
| GCGCTACGGATACTATAAAG+AGG | 0.616730 | 1_3:+57796540 | Msa0128170:CDS |
| TGGGAGAAACAGTGTTGCTG+TGG | 0.618738 | 1_3:+57804789 | Msa0128170:CDS |
| TGGCAAGTGCATCAAGTCAG+AGG | 0.622529 | 1_3:+57797338 | Msa0128170:CDS |
| CGGAGTTGGAGGAATTGGAA+GGG | 0.625464 | 1_3:-57796235 | None:intergenic |
| TATGGAACAGCTTCTCGACA+AGG | 0.628435 | 1_3:+57796793 | Msa0128170:CDS |
| TTTATATCAGCAGGTCGGGA+AGG | 0.628685 | 1_3:-57805085 | None:intergenic |
| GGTCAAATACTCAAAGGGCA+AGG | 0.632029 | 1_3:+57804404 | Msa0128170:CDS |
| TTCCGTTACTATCAGTCCTG+CGG | 0.636795 | 1_3:-57804333 | None:intergenic |
| CGGAGGAGTACGTGAAGACA+CGG | 0.637187 | 1_3:+57801240 | Msa0128170:CDS |
| AACCATTGTTTATTTCCTCG+GGG | 0.639761 | 1_3:-57800205 | None:intergenic |
| AGTACAAAAGCAGTTCTGCA+AGG | 0.651701 | 1_3:+57802813 | Msa0128170:CDS |
| AAAGATGACGAATACAACAA+AGG | 0.655081 | 1_3:-57805150 | None:intergenic |
| ATTCACCCAGAAGATTTACT+CGG | 0.660202 | 1_3:+57801263 | Msa0128170:CDS |
| AGCAACTCATGAATTTATGG+AGG | 0.667015 | 1_3:+57801035 | Msa0128170:CDS |
| AAGAAGCAATCCCTTGCGGG+AGG | 0.667453 | 1_3:+57804369 | Msa0128170:CDS |
| GAAATATCACTAGAAGAGCA+CGG | 0.674119 | 1_3:-57801062 | None:intergenic |
| CACCGCAGGACTGATAGTAA+CGG | 0.677495 | 1_3:+57804331 | Msa0128170:CDS |
| ATCAATACAAGTGAGAGCAG+AGG | 0.680679 | 1_3:+57799416 | Msa0128170:CDS |
| AGCCCCGAGGAAATAAACAA+TGG | 0.694626 | 1_3:+57800203 | Msa0128170:CDS |
| AATAGTTGAAGATGAAGCTG+CGG | 0.696631 | 1_3:+57804744 | Msa0128170:CDS |
| TGCGGGAGGAGAAGTTGGGT+AGG | 0.698188 | 1_3:+57804383 | Msa0128170:CDS |
| TTGATCGGGATCGAATTCAG+AGG | 0.698708 | 1_3:-57796300 | None:intergenic |
| AGCATATTGAGAAACTGCAT+AGG | 0.699757 | 1_3:+57797024 | Msa0128170:CDS |
| ATCGAGAGAAGCGTATTTAG+GGG | 0.703352 | 1_3:-57796267 | None:intergenic |
| AGACATTCAGCTGAGCCCCG+AGG | 0.705982 | 1_3:+57800190 | Msa0128170:CDS |
| ATTGTGCCAGCACTAGGACA+AGG | 0.706373 | 1_3:-57803201 | None:intergenic |
| ACAAAAGCAGTTCTGCAAGG+AGG | 0.709324 | 1_3:+57802816 | Msa0128170:CDS |
| CGGTGCTTACGTATACCTTG+AGG | 0.713106 | 1_3:-57804313 | None:intergenic |
| ACCTTGTGAGAAGATGCTGA+AGG | 0.717212 | 1_3:-57800242 | None:intergenic |
| TGATTGTCGCTACTGCAGAG+CGG | 0.754543 | 1_3:+57804943 | Msa0128170:CDS |
| ACATAAATATGAGAACCCAG+AGG | 0.800648 | 1_3:+57803872 | Msa0128170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTGTTTTTTATTTATTTA+TGG | + | chr1_3:57799476-57799495 | Msa0128170:intron | 10.0% |
| !!! | ATCTTTCAAATTTTTTAAAA+GGG | - | chr1_3:57799957-57799976 | None:intergenic | 10.0% |
| !!! | AATCTTTCAAATTTTTTAAA+AGG | - | chr1_3:57799958-57799977 | None:intergenic | 10.0% |
| !!! | AAAATATATTTTCTAACAAT+AGG | - | chr1_3:57802338-57802357 | None:intergenic | 10.0% |
| !!! | TATTTGATTTTTATATTCTT+TGG | + | chr1_3:57804913-57804932 | Msa0128170:intron | 10.0% |
| !!! | ATTTGATTTTTATATTCTTT+GGG | + | chr1_3:57804914-57804933 | Msa0128170:intron | 10.0% |
| !!! | TTAAATTGATTTGAATTGAT+TGG | + | chr1_3:57796374-57796393 | Msa0128170:intron | 15.0% |
| !!! | ATTAATATTGATTATCATGA+AGG | + | chr1_3:57796400-57796419 | Msa0128170:intron | 15.0% |
| !! | AAAATAAGTGAAATGAAAAA+AGG | + | chr1_3:57796895-57796914 | Msa0128170:intron | 15.0% |
| !! | ATTATAGATATTATGAAAGA+CGG | - | chr1_3:57798248-57798267 | None:intergenic | 15.0% |
| !!! | AATAGTTAGTTTATTATCAT+TGG | + | chr1_3:57799335-57799354 | Msa0128170:intron | 15.0% |
| !! | ATGGGAATATTTATAATTAT+AGG | + | chr1_3:57800862-57800881 | Msa0128170:intron | 15.0% |
| !! | AAAATATTAACTAAAGTCTT+AGG | - | chr1_3:57801518-57801537 | None:intergenic | 15.0% |
| !! | AATCTAAATCAATTTCTTAT+AGG | + | chr1_3:57801556-57801575 | Msa0128170:intron | 15.0% |
| !! | TATATTTGAATGATATTTAC+AGG | + | chr1_3:57802176-57802195 | Msa0128170:intron | 15.0% |
| !! | AGGTTTAATTCATTATTAAA+TGG | + | chr1_3:57803621-57803640 | Msa0128170:intron | 15.0% |
| !! | GGTTTAATTCATTATTAAAT+GGG | + | chr1_3:57803622-57803641 | Msa0128170:intron | 15.0% |
| !!! | TATTTATTTTATACAGCATA+AGG | + | chr1_3:57804013-57804032 | Msa0128170:intron | 15.0% |
| !! | GTGATTTAAATATAAACAAT+TGG | + | chr1_3:57804549-57804568 | Msa0128170:intron | 15.0% |
| !!! | AATCTCTTCATAAATTTTTT+TGG | + | chr1_3:57805052-57805071 | Msa0128170:exon | 15.0% |
| !!! | ATCTCTTCATAAATTTTTTT+GGG | + | chr1_3:57805053-57805072 | Msa0128170:exon | 15.0% |
| !!! | TATTATTTTTTTAGACAGTA+TGG | + | chr1_3:57805273-57805292 | Msa0128170:three_prime_UTR | 15.0% |
| !! | AAATGAAAAAAGGAAGATAA+GGG | + | chr1_3:57796905-57796924 | Msa0128170:intron | 20.0% |
| !!! | AGAATAAGTTTTTCATTGTT+AGG | - | chr1_3:57797167-57797186 | None:intergenic | 20.0% |
| !!! | AAAAACTTATTCTTTTAGTG+TGG | + | chr1_3:57797174-57797193 | Msa0128170:intron | 20.0% |
| !! | TAGAAAGATTATTCAACATA+GGG | - | chr1_3:57797201-57797220 | None:intergenic | 20.0% |
| !! | ATTGAATTAGAAACCATAAA+AGG | - | chr1_3:57797424-57797443 | None:intergenic | 20.0% |
| !! | TAATGTAATAAAAAACTTGC+AGG | + | chr1_3:57797580-57797599 | Msa0128170:CDS | 20.0% |
| !! | ATTCTATCTCATTTATAACA+TGG | + | chr1_3:57797709-57797728 | Msa0128170:intron | 20.0% |
| !! | TAACTAAATAAGATAGCATA+TGG | - | chr1_3:57797756-57797775 | None:intergenic | 20.0% |
| !! | AAAACACTAGCATAAAATAT+AGG | + | chr1_3:57797880-57797899 | Msa0128170:intron | 20.0% |
| !! | AAACACTAGCATAAAATATA+GGG | + | chr1_3:57797881-57797900 | Msa0128170:intron | 20.0% |
| !!! | AACCATTAATTTTAATCCAA+GGG | - | chr1_3:57798072-57798091 | None:intergenic | 20.0% |
| !!! | AGGGAATTATTTTTTTTGAA+TGG | + | chr1_3:57798308-57798327 | Msa0128170:intron | 20.0% |
| !! | TGAATTGAATTACATGAATT+GGG | - | chr1_3:57798480-57798499 | None:intergenic | 20.0% |
| !! | TTGAATTGAATTACATGAAT+TGG | - | chr1_3:57798481-57798500 | None:intergenic | 20.0% |
| !! | AAAACATTATGTTTGTGTAT+TGG | - | chr1_3:57798552-57798571 | None:intergenic | 20.0% |
| !!! | TCTTAGTATTCTTTTTGTAT+GGG | - | chr1_3:57798869-57798888 | None:intergenic | 20.0% |
| !!! | TTTTGGGATTATTTCTATAA+GGG | - | chr1_3:57798922-57798941 | None:intergenic | 20.0% |
| !!! | ATTTTGGGATTATTTCTATA+AGG | - | chr1_3:57798923-57798942 | None:intergenic | 20.0% |
| !! | CTTTACATTTCAATGAATAA+AGG | + | chr1_3:57798987-57799006 | Msa0128170:intron | 20.0% |
| !!! | TTTTTAATTGGGCATTATTA+AGG | + | chr1_3:57799185-57799204 | Msa0128170:intron | 20.0% |
| !!! | TTTTAATTGGGCATTATTAA+GGG | + | chr1_3:57799186-57799205 | Msa0128170:intron | 20.0% |
| !! | AAATAAAAAACAGTACAAAC+CGG | - | chr1_3:57799471-57799490 | None:intergenic | 20.0% |
| !!! | TTCAAATTTTTTAAAAGGGT+AGG | - | chr1_3:57799953-57799972 | None:intergenic | 20.0% |
| !! | TAAGTTATGTGTAAAAAGAA+AGG | - | chr1_3:57800922-57800941 | None:intergenic | 20.0% |
| !!! | TTAGTATTTTTATCTACCAT+AGG | + | chr1_3:57801135-57801154 | Msa0128170:intron | 20.0% |
| !!! | AATTAAATTATCTTTTGTCC+AGG | - | chr1_3:57801975-57801994 | None:intergenic | 20.0% |
| !! | TTCTTTGATAGATTTATTCA+TGG | + | chr1_3:57802043-57802062 | Msa0128170:intron | 20.0% |
| !! | TCTTTGATAGATTTATTCAT+GGG | + | chr1_3:57802044-57802063 | Msa0128170:intron | 20.0% |
| !! | TTATAAGTTCAAGGAAAAAA+TGG | - | chr1_3:57802096-57802115 | None:intergenic | 20.0% |
| !!! | ATATATTTTCTAACAATAGG+AGG | - | chr1_3:57802335-57802354 | None:intergenic | 20.0% |
| !!! | AATTATTTCTTCCTGAAAAT+AGG | - | chr1_3:57803120-57803139 | None:intergenic | 20.0% |
| !! | ATAAAAATCAAATAGCCATT+AGG | - | chr1_3:57804907-57804926 | None:intergenic | 20.0% |
| !! | AACTCTAAATTTCTTAACAT+TGG | - | chr1_3:57805370-57805389 | None:intergenic | 20.0% |
| !!! | ATGTTAAGAAATTTAGAGTT+CGG | + | chr1_3:57805370-57805389 | Msa0128170:three_prime_UTR | 20.0% |
| !! | TTTTCTTGTGATGTGAAAAT+GGG | - | chr1_3:57796008-57796027 | None:intergenic | 25.0% |
| !!! | TAAACTGGTTTTTGAGATTT+GGG | - | chr1_3:57796060-57796079 | None:intergenic | 25.0% |
| ! | GAAGGTTTATAAATCGAATT+TGG | + | chr1_3:57796418-57796437 | Msa0128170:intron | 25.0% |
| ! | GTTTATAAATCGAATTTGGA+AGG | + | chr1_3:57796422-57796441 | Msa0128170:CDS | 25.0% |
| ! | TAACTGTAGCATTAGATTTA+TGG | + | chr1_3:57796816-57796835 | Msa0128170:intron | 25.0% |
| ! | GAAATGAAAAAAGGAAGATA+AGG | + | chr1_3:57796904-57796923 | Msa0128170:intron | 25.0% |
| ! | AGAAAGATTATTCAACATAG+GGG | - | chr1_3:57797200-57797219 | None:intergenic | 25.0% |
| ! | GTAGAAAGATTATTCAACAT+AGG | - | chr1_3:57797202-57797221 | None:intergenic | 25.0% |
| ! | GAAAAAGCAACCTTAAAAAT+CGG | - | chr1_3:57797402-57797421 | None:intergenic | 25.0% |
| ! | CGTGTAAAAGTAATAATCAA+AGG | - | chr1_3:57797447-57797466 | None:intergenic | 25.0% |
| !! | TTATCATGCTCTTTAGAAAT+GGG | + | chr1_3:57797618-57797637 | Msa0128170:intron | 25.0% |
| ! | TTAGCTTCCAAGTTATTATT+TGG | + | chr1_3:57797682-57797701 | Msa0128170:intron | 25.0% |
| ! | AATAGAGCCAAATAATAACT+TGG | - | chr1_3:57797692-57797711 | None:intergenic | 25.0% |
| !!! | CAACCATTAATTTTAATCCA+AGG | - | chr1_3:57798073-57798092 | None:intergenic | 25.0% |
| ! | ATTACATGTTCATCTACATA+AGG | + | chr1_3:57798288-57798307 | Msa0128170:intron | 25.0% |
| ! | TTACATGTTCATCTACATAA+GGG | + | chr1_3:57798289-57798308 | Msa0128170:intron | 25.0% |
| !!! | GAATTTTTTACATGTTTTGC+AGG | - | chr1_3:57798458-57798477 | None:intergenic | 25.0% |
| !!! | ATTTGAGATTTTAATGCTCA+AGG | + | chr1_3:57798596-57798615 | Msa0128170:intron | 25.0% |
| !! | GTCTTAGTATTCTTTTTGTA+TGG | - | chr1_3:57798870-57798889 | None:intergenic | 25.0% |
| ! | AAAGAATACTAAGACTAAGA+AGG | + | chr1_3:57798875-57798894 | Msa0128170:intron | 25.0% |
| ! | TTTAATTGGGCATTATTAAG+GGG | + | chr1_3:57799187-57799206 | Msa0128170:intron | 25.0% |
| !!! | AAGAAGTATTTCACATCATA+AGG | - | chr1_3:57799559-57799578 | None:intergenic | 25.0% |
| ! | ATTCTCTTCTCTCTATTAAA+AGG | - | chr1_3:57799625-57799644 | None:intergenic | 25.0% |
| !!! | AGAATGAACATTGTTTCTTT+TGG | + | chr1_3:57799640-57799659 | Msa0128170:intron | 25.0% |
| !!! | GAATGAACATTGTTTCTTTT+GGG | + | chr1_3:57799641-57799660 | Msa0128170:intron | 25.0% |
| ! | GAACTTAAAAATTGTATTGG+AGG | + | chr1_3:57799807-57799826 | Msa0128170:intron | 25.0% |
| ! | TTAAAAATTGTATTGGAGGA+GGG | + | chr1_3:57799811-57799830 | Msa0128170:intron | 25.0% |
| !! | TTATTTTCTTTTTTCCTGAG+AGG | + | chr1_3:57800096-57800115 | Msa0128170:intron | 25.0% |
| ! | ACATCATTTCTGTTGAAATT+TGG | + | chr1_3:57800359-57800378 | Msa0128170:intron | 25.0% |
| ! | CATCATTTCTGTTGAAATTT+GGG | + | chr1_3:57800360-57800379 | Msa0128170:intron | 25.0% |
| ! | ATCATTTCTGTTGAAATTTG+GGG | + | chr1_3:57800361-57800380 | Msa0128170:intron | 25.0% |
| ! | TCTAATTATCTGCAACAAAA+TGG | + | chr1_3:57800834-57800853 | Msa0128170:intron | 25.0% |
| !! | GTGTAAAAAGAAAGGAATTT+TGG | - | chr1_3:57800914-57800933 | None:intergenic | 25.0% |
| ! | TAAAAAATCTGTACTAGTGA+AGG | - | chr1_3:57800950-57800969 | None:intergenic | 25.0% |
| ! | GGTAGATAAAAATACTAACT+TGG | - | chr1_3:57801133-57801152 | None:intergenic | 25.0% |
| ! | TTTACCAGCAATAGATAAAA+TGG | - | chr1_3:57801164-57801183 | None:intergenic | 25.0% |
| ! | GCATATTATATAACAGACAT+AGG | - | chr1_3:57801419-57801438 | None:intergenic | 25.0% |
| !!! | CTTTTTGTCCAATTTAACTT+TGG | + | chr1_3:57801468-57801487 | Msa0128170:intron | 25.0% |
| ! | GTATATAACAGCAATAAATG+GGG | - | chr1_3:57801757-57801776 | None:intergenic | 25.0% |
| ! | CGTATATAACAGCAATAAAT+GGG | - | chr1_3:57801758-57801777 | None:intergenic | 25.0% |
| ! | TAAAATCAAATTTCCTTCTG+TGG | + | chr1_3:57802141-57802160 | Msa0128170:intron | 25.0% |
| ! | TTAAAGCTAAAAGCAAATAC+TGG | - | chr1_3:57802473-57802492 | None:intergenic | 25.0% |
| !! | AACATTTTGTAATTCTCCTA+TGG | - | chr1_3:57802520-57802539 | None:intergenic | 25.0% |
| ! | GAATTACAAAATGTTGAAAC+TGG | + | chr1_3:57802525-57802544 | Msa0128170:intron | 25.0% |
| !! | TCAATAGCATTTTGTGATTT+CGG | - | chr1_3:57802603-57802622 | None:intergenic | 25.0% |
| !!! | AGTCATCATCTAAAATTTTG+CGG | - | chr1_3:57803006-57803025 | None:intergenic | 25.0% |
| !! | AAAATTTTAGATGATGACTC+TGG | + | chr1_3:57803007-57803026 | Msa0128170:CDS | 25.0% |
| !! | AAATTTTAGATGATGACTCT+GGG | + | chr1_3:57803008-57803027 | Msa0128170:CDS | 25.0% |
| !! | AAGAGAGTTATTTGTTGATT+TGG | + | chr1_3:57803045-57803064 | Msa0128170:CDS | 25.0% |
| !! | AGTTCATATTTTCCTTTCAA+TGG | + | chr1_3:57803510-57803529 | Msa0128170:intron | 25.0% |
| !! | TTTCTATTGACTATGAACTT+CGG | - | chr1_3:57803592-57803611 | None:intergenic | 25.0% |
| ! | AAGTTCATAGTCAATAGAAA+TGG | + | chr1_3:57803592-57803611 | Msa0128170:intron | 25.0% |
| ! | GTCAATAGAAATGGAAATAA+AGG | + | chr1_3:57803601-57803620 | Msa0128170:intron | 25.0% |
| ! | ATTATTAAATGGGTAGTGAA+AGG | + | chr1_3:57803632-57803651 | Msa0128170:intron | 25.0% |
| !!! | TTTTAAGAAGAGCATATAAC+AGG | - | chr1_3:57803951-57803970 | None:intergenic | 25.0% |
| !!! | TGTTGATTTTTTTCTTCAAG+AGG | + | chr1_3:57804058-57804077 | Msa0128170:CDS | 25.0% |
| ! | ATTAATGAAAGAAAACAGAG+CGG | - | chr1_3:57804110-57804129 | None:intergenic | 25.0% |
| ! | TGAAATTGAAATACAATGCA+CGG | + | chr1_3:57804156-57804175 | Msa0128170:intron | 25.0% |
| ! | GATATTTAATTGCTGTAAAC+TGG | + | chr1_3:57804219-57804238 | Msa0128170:intron | 25.0% |
| ! | CACAAAAATAGAATATACAC+AGG | + | chr1_3:57804483-57804502 | Msa0128170:CDS | 25.0% |
| ! | AGAACATAAAAAAAGAGCTA+AGG | + | chr1_3:57805124-57805143 | Msa0128170:three_prime_UTR | 25.0% |
| ! | GATATATGTTACAAGTTACA+AGG | - | chr1_3:57805242-57805261 | None:intergenic | 25.0% |
| ! | ATTTCTTAACATTGGACAAA+AGG | - | chr1_3:57805362-57805381 | None:intergenic | 25.0% |
| ! | CTTTTCTTGTGATGTGAAAA+TGG | - | chr1_3:57796009-57796028 | None:intergenic | 30.0% |
| !!! | AAACTGGTTTTTGAGATTTG+GGG | - | chr1_3:57796059-57796078 | None:intergenic | 30.0% |
| !!! | CTAAACTGGTTTTTGAGATT+TGG | - | chr1_3:57796061-57796080 | None:intergenic | 30.0% |
| ATCACAACAGAGTTCAAAAT+GGG | + | chr1_3:57796137-57796156 | Msa0128170:exon | 30.0% | |
| ! | AGAATGTTCATGTATTGATC+GGG | - | chr1_3:57796317-57796336 | None:intergenic | 30.0% |
| ! | CAGAATGTTCATGTATTGAT+CGG | - | chr1_3:57796318-57796337 | None:intergenic | 30.0% |
| CAAGAGAAAAATAGCTATGA+AGG | - | chr1_3:57796684-57796703 | None:intergenic | 30.0% | |
| TCAACAAAACCCAAATACAA+CGG | - | chr1_3:57796736-57796755 | None:intergenic | 30.0% | |
| AGGATGAAAAGTAACATTTC+AGG | + | chr1_3:57796758-57796777 | Msa0128170:intron | 30.0% | |
| GGATGAAAAGTAACATTTCA+GGG | + | chr1_3:57796759-57796778 | Msa0128170:intron | 30.0% | |
| AGATAAGGGTTGAATTTGAT+AGG | + | chr1_3:57796919-57796938 | Msa0128170:intron | 30.0% | |
| ACACTTCTCTATTTGACAAA+AGG | + | chr1_3:57797000-57797019 | Msa0128170:CDS | 30.0% | |
| CACTTCTCTATTTGACAAAA+GGG | + | chr1_3:57797001-57797020 | Msa0128170:CDS | 30.0% | |
| ACATACAATGAACAATGACA+TGG | - | chr1_3:57797093-57797112 | None:intergenic | 30.0% | |
| ATATTAAATGCGATGCAAGT+TGG | + | chr1_3:57797125-57797144 | Msa0128170:intron | 30.0% | |
| ! | TCACAGAAACACTTGTTAAA+AGG | - | chr1_3:57797250-57797269 | None:intergenic | 30.0% |
| TATAAACTACTCTTCGACAA+GGG | - | chr1_3:57797298-57797317 | None:intergenic | 30.0% | |
| ATATAAACTACTCTTCGACA+AGG | - | chr1_3:57797299-57797318 | None:intergenic | 30.0% | |
| !!! | AAGGTTGCTTTTTCCTTTTA+TGG | + | chr1_3:57797408-57797427 | Msa0128170:intron | 30.0% |
| ATATGGAGATTCATCATTCA+AGG | + | chr1_3:57797526-57797545 | Msa0128170:CDS | 30.0% | |
| ! | CTTATCATGCTCTTTAGAAA+TGG | + | chr1_3:57797617-57797636 | Msa0128170:intron | 30.0% |
| TAAATAATCCATATTTCCCC+TGG | - | chr1_3:57797665-57797684 | None:intergenic | 30.0% | |
| ! | TTATAAGTTTTGCCCATGTT+GGG | - | chr1_3:57797822-57797841 | None:intergenic | 30.0% |
| ! | TTTATAAGTTTTGCCCATGT+TGG | - | chr1_3:57797823-57797842 | None:intergenic | 30.0% |
| AGCCCTTGGATTAAAATTAA+TGG | + | chr1_3:57798067-57798086 | Msa0128170:intron | 30.0% | |
| ATAGATATTATGAAAGACGG+TGG | - | chr1_3:57798245-57798264 | None:intergenic | 30.0% | |
| AATCTCAAATCAAAGACCAA+CGG | - | chr1_3:57798586-57798605 | None:intergenic | 30.0% | |
| AACCATGATTGTAGAAGATA+AGG | + | chr1_3:57798640-57798659 | Msa0128170:intron | 30.0% | |
| TCAACCATGAATTTATTCCA+AGG | + | chr1_3:57798770-57798789 | Msa0128170:intron | 30.0% | |
| CAACCATGAATTTATTCCAA+GGG | + | chr1_3:57798771-57798790 | Msa0128170:intron | 30.0% | |
| GTATGGGTCGTATATATATA+GGG | - | chr1_3:57798853-57798872 | None:intergenic | 30.0% | |
| TGTATGGGTCGTATATATAT+AGG | - | chr1_3:57798854-57798873 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTTCTCTCTAACCA+GGG | + | chr1_3:57799372-57799391 | Msa0128170:intron | 30.0% |
| ! | CTTCTTTTTATTGCTCTGTA+TGG | + | chr1_3:57799573-57799592 | Msa0128170:intron | 30.0% |
| TCTTCTCTCTATTAAAAGGA+GGG | - | chr1_3:57799621-57799640 | None:intergenic | 30.0% | |
| TGGAAGAAATAGAGGAAAAT+GGG | + | chr1_3:57799725-57799744 | Msa0128170:intron | 30.0% | |
| GGGGAACTTAAAAATTGTAT+TGG | + | chr1_3:57799804-57799823 | Msa0128170:intron | 30.0% | |
| CTTAAAAATTGTATTGGAGG+AGG | + | chr1_3:57799810-57799829 | Msa0128170:intron | 30.0% | |
| GAACTAAATCAATAACACCA+AGG | - | chr1_3:57800053-57800072 | None:intergenic | 30.0% | |
| ! | AGAGGAAGTTTTCTATTTGT+TGG | + | chr1_3:57800114-57800133 | Msa0128170:intron | 30.0% |
| TGAACCATTGTTTATTTCCT+CGG | - | chr1_3:57800210-57800229 | None:intergenic | 30.0% | |
| ! | TTTGCTGTCAACATCTTAAA+GGG | - | chr1_3:57800315-57800334 | None:intergenic | 30.0% |
| CTTGAGAAGAGTTTATAAAG+AGG | - | chr1_3:57800432-57800451 | None:intergenic | 30.0% | |
| TCCAACAATTTCAATCAAGA+TGG | + | chr1_3:57800587-57800606 | Msa0128170:intron | 30.0% | |
| ACCATCTTGATTGAAATTGT+TGG | - | chr1_3:57800591-57800610 | None:intergenic | 30.0% | |
| TGATTCTGTGAAGTAATGTA+CGG | + | chr1_3:57800613-57800632 | Msa0128170:intron | 30.0% | |
| GGAATGATCTATCTTCTATA+AGG | - | chr1_3:57800683-57800702 | None:intergenic | 30.0% | |
| CAAATCATCTTCTCATAAAG+TGG | - | chr1_3:57800704-57800723 | None:intergenic | 30.0% | |
| CTTTATGAGAAGATGATTTG+TGG | + | chr1_3:57800704-57800723 | Msa0128170:intron | 30.0% | |
| TGCAACAAAATGGATGATAT+GGG | + | chr1_3:57800844-57800863 | Msa0128170:intron | 30.0% | |
| TCTCTTCCATTTCCTATTAT+AGG | + | chr1_3:57801011-57801030 | Msa0128170:intron | 30.0% | |
| ! | GATCAAATTTGCTCAAGATT+TGG | + | chr1_3:57801104-57801123 | Msa0128170:CDS | 30.0% |
| ATAGATAAAATGGCTTCCTA+TGG | - | chr1_3:57801154-57801173 | None:intergenic | 30.0% | |
| !!! | TTACTTTTTCAATGTTTGCC+AGG | + | chr1_3:57801204-57801223 | Msa0128170:intron | 30.0% |
| AAGATCTGCCAAAGTTAAAT+TGG | - | chr1_3:57801479-57801498 | None:intergenic | 30.0% | |
| AAAGACAAGCAAAAACCAAA+TGG | - | chr1_3:57801650-57801669 | None:intergenic | 30.0% | |
| GCGTATATAACAGCAATAAA+TGG | - | chr1_3:57801759-57801778 | None:intergenic | 30.0% | |
| AAATCCCAGTTTAGCATAAA+TGG | - | chr1_3:57801783-57801802 | None:intergenic | 30.0% | |
| ! | ACACTTCCTTTTAAACATCT+TGG | + | chr1_3:57801886-57801905 | Msa0128170:intron | 30.0% |
| TTGTTGCCAAGATGTTTAAA+AGG | - | chr1_3:57801895-57801914 | None:intergenic | 30.0% | |
| TATTTCAACTGTATCAGACA+GGG | - | chr1_3:57802000-57802019 | None:intergenic | 30.0% | |
| ATATTTCAACTGTATCAGAC+AGG | - | chr1_3:57802001-57802020 | None:intergenic | 30.0% | |
| CAACAAGAGTTATAAGTTCA+AGG | - | chr1_3:57802105-57802124 | None:intergenic | 30.0% | |
| AATGAATAACCTCAAGAGAA+TGG | - | chr1_3:57802262-57802281 | None:intergenic | 30.0% | |
| GAATTTGAAAACTACAGCTA+AGG | - | chr1_3:57802313-57802332 | None:intergenic | 30.0% | |
| TTCATCCTCTGAATATTTGT+AGG | + | chr1_3:57802356-57802375 | Msa0128170:intron | 30.0% | |
| AAATGTTGAAACTGGAAAAC+TGG | + | chr1_3:57802533-57802552 | Msa0128170:intron | 30.0% | |
| AATGTTGAAACTGGAAAACT+GGG | + | chr1_3:57802534-57802553 | Msa0128170:intron | 30.0% | |
| TGATTTCTCTTGGAAAAATC+TGG | + | chr1_3:57802668-57802687 | Msa0128170:intron | 30.0% | |
| TTTCTTACAAGTCCTGAAAA+AGG | + | chr1_3:57802749-57802768 | Msa0128170:CDS | 30.0% | |
| !! | TTTGTTGATTTGGTTCAAGA+AGG | + | chr1_3:57803055-57803074 | Msa0128170:CDS | 30.0% |
| TATTTCTTCCTGAAAATAGG+AGG | - | chr1_3:57803117-57803136 | None:intergenic | 30.0% | |
| ! | TTGGATTTGATTTCTGAAAG+TGG | + | chr1_3:57803288-57803307 | Msa0128170:intron | 30.0% |
| TGAAAGTGGATAAATTTGTG+TGG | + | chr1_3:57803302-57803321 | Msa0128170:intron | 30.0% | |
| AGATTACAAGGAAACTTATG+AGG | - | chr1_3:57803358-57803377 | None:intergenic | 30.0% | |
| TAAGTTTCCTTGTAATCTTC+AGG | + | chr1_3:57803360-57803379 | Msa0128170:intron | 30.0% | |
| ! | AATTTTCTACAGATTTCTCC+CGG | - | chr1_3:57803448-57803467 | None:intergenic | 30.0% |
| GAGAAATCTGTAGAAAATTC+CGG | + | chr1_3:57803449-57803468 | Msa0128170:CDS | 30.0% | |
| CACAAGTGTAATTTCTCTTA+AGG | + | chr1_3:57803687-57803706 | Msa0128170:intron | 30.0% | |
| TGCTCTTCTTAAAAACAGAT+TGG | + | chr1_3:57803957-57803976 | Msa0128170:intron | 30.0% | |
| !!! | GATTTTTTTCTTCAAGAGGT+TGG | + | chr1_3:57804062-57804081 | Msa0128170:intron | 30.0% |
| ATTTAATTGCTGTAAACTGG+AGG | + | chr1_3:57804222-57804241 | Msa0128170:intron | 30.0% | |
| CATTATGTATAACTTCAAGC+TGG | - | chr1_3:57804276-57804295 | None:intergenic | 30.0% | |
| ! | CAAATTCTTGTACACTTTTC+AGG | - | chr1_3:57804645-57804664 | None:intergenic | 30.0% |
| TTCGATTAAAAGTTTGGAGA+CGG | - | chr1_3:57804669-57804688 | None:intergenic | 30.0% | |
| ATCCACTTCGATTAAAAGTT+TGG | - | chr1_3:57804675-57804694 | None:intergenic | 30.0% | |
| TTCAACTATTTCCCTTATAG+GGG | - | chr1_3:57804734-57804753 | None:intergenic | 30.0% | |
| CTTCAACTATTTCCCTTATA+GGG | - | chr1_3:57804735-57804754 | None:intergenic | 30.0% | |
| TCTTCAACTATTTCCCTTAT+AGG | - | chr1_3:57804736-57804755 | None:intergenic | 30.0% | |
| ! | TTTTTATATTCTTTGGGCAC+AGG | + | chr1_3:57804920-57804939 | Msa0128170:intron | 30.0% |
| AAACGTGTATTTATATCAGC+AGG | - | chr1_3:57805097-57805116 | None:intergenic | 30.0% | |
| AAAGATGACGAATACAACAA+AGG | - | chr1_3:57805153-57805172 | None:intergenic | 30.0% | |
| ATCTTTCGTAGAATTAGTGA+TGG | + | chr1_3:57805167-57805186 | Msa0128170:three_prime_UTR | 30.0% | |
| TTGGCAATTGATTGTTAACT+TGG | + | chr1_3:57805191-57805210 | Msa0128170:three_prime_UTR | 30.0% | |
| GGTGAATTGAAAAGCTAAAC+TGG | - | chr1_3:57796075-57796094 | None:intergenic | 35.0% | |
| ! | TCTTGCTATGATCTGTGAAA+TGG | - | chr1_3:57796096-57796115 | None:intergenic | 35.0% |
| CATCACAACAGAGTTCAAAA+TGG | + | chr1_3:57796136-57796155 | Msa0128170:exon | 35.0% | |
| CGATCAATACATGAACATTC+TGG | + | chr1_3:57796316-57796335 | Msa0128170:CDS | 35.0% | |
| ACTTCAACGACATGTTGAAA+TGG | + | chr1_3:57796448-57796467 | Msa0128170:CDS | 35.0% | |
| TGTGAAAGAACCGTTGTATT+TGG | + | chr1_3:57796723-57796742 | Msa0128170:intron | 35.0% | |
| GTGAAAGAACCGTTGTATTT+GGG | + | chr1_3:57796724-57796743 | Msa0128170:intron | 35.0% | |
| !!! | GTATTTGGGTTTTGTTGAAC+AGG | + | chr1_3:57796738-57796757 | Msa0128170:intron | 35.0% |
| GAAAAGTAACATTTCAGGGA+TGG | + | chr1_3:57796763-57796782 | Msa0128170:CDS | 35.0% | |
| AGATAATGTCTGTTCAGTCA+AGG | + | chr1_3:57796964-57796983 | Msa0128170:intron | 35.0% | |
| AGCATATTGAGAAACTGCAT+AGG | + | chr1_3:57797024-57797043 | Msa0128170:CDS | 35.0% | |
| TAATCTTCTTCGCAAAGTTC+AGG | + | chr1_3:57797052-57797071 | Msa0128170:CDS | 35.0% | |
| CTTGCATCGCATTTAATATG+TGG | - | chr1_3:57797124-57797143 | None:intergenic | 35.0% | |
| !! | CAAGTTGGATTTTTGCTGAA+TGG | + | chr1_3:57797140-57797159 | Msa0128170:intron | 35.0% |
| TATGATCTTCCTGATAGACT+TGG | + | chr1_3:57797318-57797337 | Msa0128170:CDS | 35.0% | |
| TACACGCAACATATCAATCT+AGG | + | chr1_3:57797461-57797480 | Msa0128170:intron | 35.0% | |
| AGGTCTCAGATGAAATATCT+TGG | + | chr1_3:57797481-57797500 | Msa0128170:intron | 35.0% | |
| GGTTATATCCTCTTTCTATC+AGG | + | chr1_3:57797502-57797521 | Msa0128170:intron | 35.0% | |
| ! | GTTGGGAAAACTGGTTTATA+AGG | - | chr1_3:57797805-57797824 | None:intergenic | 35.0% |
| ! | ATAAACCAGTTTTCCCAACA+TGG | + | chr1_3:57797806-57797825 | Msa0128170:intron | 35.0% |
| ! | TAAACCAGTTTTCCCAACAT+GGG | + | chr1_3:57797807-57797826 | Msa0128170:intron | 35.0% |
| ATAGACTTGAACAGTTGTGA+GGG | - | chr1_3:57798145-57798164 | None:intergenic | 35.0% | |
| TATAGACTTGAACAGTTGTG+AGG | - | chr1_3:57798146-57798165 | None:intergenic | 35.0% | |
| TTACTGGTGGAAAGATGAAA+AGG | - | chr1_3:57798179-57798198 | None:intergenic | 35.0% | |
| ! | TTTTCCATGGTGATAGTTAC+TGG | - | chr1_3:57798195-57798214 | None:intergenic | 35.0% |
| ! | CAACTTTGCATTGATGTTAC+AGG | + | chr1_3:57798363-57798382 | Msa0128170:intron | 35.0% |
| AATCCAACACATTGAGAGAA+GGG | + | chr1_3:57798499-57798518 | Msa0128170:intron | 35.0% | |
| ATCTCAAATCAAAGACCAAC+GGG | - | chr1_3:57798585-57798604 | None:intergenic | 35.0% | |
| CTCCTTATCTTCTACAATCA+TGG | - | chr1_3:57798645-57798664 | None:intergenic | 35.0% | |
| !! | GGGATTATTTCTATAAGGGT+TGG | - | chr1_3:57798918-57798937 | None:intergenic | 35.0% |
| !!! | GACACGGTTCATCTTATTTT+GGG | - | chr1_3:57798938-57798957 | None:intergenic | 35.0% |
| !! | AGACACGGTTCATCTTATTT+TGG | - | chr1_3:57798939-57798958 | None:intergenic | 35.0% |
| !!! | CCTAGTAGTTTTAAGAGACA+CGG | - | chr1_3:57798954-57798973 | None:intergenic | 35.0% |
| CGTGTCTCTTAAAACTACTA+GGG | + | chr1_3:57798952-57798971 | Msa0128170:intron | 35.0% | |
| ACTTGTTCAATGCATGTTCA+AGG | + | chr1_3:57799218-57799237 | Msa0128170:intron | 35.0% | |
| CTTGTTCAATGCATGTTCAA+GGG | + | chr1_3:57799219-57799238 | Msa0128170:intron | 35.0% | |
| TTGTTCAATGCATGTTCAAG+GGG | + | chr1_3:57799220-57799239 | Msa0128170:intron | 35.0% | |
| !!! | CTTTTTTCTTCTCTCTAACC+AGG | + | chr1_3:57799371-57799390 | Msa0128170:intron | 35.0% |
| ! | TTTTTCTTCTCTCTAACCAG+GGG | + | chr1_3:57799373-57799392 | Msa0128170:intron | 35.0% |
| AGTATTTCACATCATAAGGC+TGG | - | chr1_3:57799555-57799574 | None:intergenic | 35.0% | |
| !!! | TTGCTCTGTATGGTTAGTTT+TGG | + | chr1_3:57799583-57799602 | Msa0128170:intron | 35.0% |
| !!! | TGCTCTGTATGGTTAGTTTT+GGG | + | chr1_3:57799584-57799603 | Msa0128170:intron | 35.0% |
| CTCTTCTCTCTATTAAAAGG+AGG | - | chr1_3:57799622-57799641 | None:intergenic | 35.0% | |
| GTGGAAGAAATAGAGGAAAA+TGG | + | chr1_3:57799724-57799743 | Msa0128170:intron | 35.0% | |
| AAGAAATAGAGGAAAATGGG+AGG | + | chr1_3:57799728-57799747 | Msa0128170:intron | 35.0% | |
| AGAAATAGAGGAAAATGGGA+GGG | + | chr1_3:57799729-57799748 | Msa0128170:intron | 35.0% | |
| AATACTAAACCCTCCTCATT+TGG | + | chr1_3:57799782-57799801 | Msa0128170:intron | 35.0% | |
| ATACTAAACCCTCCTCATTT+GGG | + | chr1_3:57799783-57799802 | Msa0128170:intron | 35.0% | |
| !!! | TTTTTAAGTTCCCCCAAATG+AGG | - | chr1_3:57799798-57799817 | None:intergenic | 35.0% |
| GTGGAAAATATGAGGGAAAA+TGG | - | chr1_3:57799984-57800003 | None:intergenic | 35.0% | |
| CAAATAGAAAACTTCCTCTC+AGG | - | chr1_3:57800113-57800132 | None:intergenic | 35.0% | |
| !! | GAAGTTTTCTATTTGTTGGC+AGG | + | chr1_3:57800118-57800137 | Msa0128170:intron | 35.0% |
| AACCATTGTTTATTTCCTCG+GGG | - | chr1_3:57800208-57800227 | None:intergenic | 35.0% | |
| GAACCATTGTTTATTTCCTC+GGG | - | chr1_3:57800209-57800228 | None:intergenic | 35.0% | |
| GAGGAAATAAACAATGGTTC+AGG | + | chr1_3:57800209-57800228 | Msa0128170:CDS | 35.0% | |
| TCAACATCTTAAAGGGACAA+GGG | - | chr1_3:57800308-57800327 | None:intergenic | 35.0% | |
| !! | GTTTGCTGTCAACATCTTAA+AGG | - | chr1_3:57800316-57800335 | None:intergenic | 35.0% |
| GAGAAGAGTTTATAAAGAGG+AGG | - | chr1_3:57800429-57800448 | None:intergenic | 35.0% | |
| TTGTGGTTCTTAAACTGTTG+AGG | + | chr1_3:57800721-57800740 | Msa0128170:intron | 35.0% | |
| ! | GAACTTGAAAATTGCTGACT+TGG | + | chr1_3:57800754-57800773 | Msa0128170:intron | 35.0% |
| CTGCAACAAAATGGATGATA+TGG | + | chr1_3:57800843-57800862 | Msa0128170:intron | 35.0% | |
| TTGCTGCCTATAATAGGAAA+TGG | - | chr1_3:57801020-57801039 | None:intergenic | 35.0% | |
| AGCAACTCATGAATTTATGG+AGG | + | chr1_3:57801035-57801054 | Msa0128170:CDS | 35.0% | |
| GAAATATCACTAGAAGAGCA+CGG | - | chr1_3:57801065-57801084 | None:intergenic | 35.0% | |
| TGCTCTTCTAGTGATATTTC+CGG | + | chr1_3:57801065-57801084 | Msa0128170:CDS | 35.0% | |
| !! | ATCAACTGCTTTTCTGAATC+CGG | - | chr1_3:57801087-57801106 | None:intergenic | 35.0% |
| !! | GAAGCCATTTTATCTATTGC+TGG | + | chr1_3:57801157-57801176 | Msa0128170:intron | 35.0% |
| ATTCACCCAGAAGATTTACT+CGG | + | chr1_3:57801263-57801282 | Msa0128170:CDS | 35.0% | |
| !! | TTTGCTACTTTCCCAATTTC+TGG | + | chr1_3:57801308-57801327 | Msa0128170:intron | 35.0% |
| CAAGCATATGTCCAGAAATT+GGG | - | chr1_3:57801322-57801341 | None:intergenic | 35.0% | |
| TCAAGCATATGTCCAGAAAT+TGG | - | chr1_3:57801323-57801342 | None:intergenic | 35.0% | |
| AGTTCCACATTAAGTAGATG+TGG | + | chr1_3:57801376-57801395 | Msa0128170:intron | 35.0% | |
| TGCATATAATCAGGAGAACA+GGG | - | chr1_3:57801626-57801645 | None:intergenic | 35.0% | |
| ATGCATATAATCAGGAGAAC+AGG | - | chr1_3:57801627-57801646 | None:intergenic | 35.0% | |
| CCAAATGGATGCATATAATC+AGG | - | chr1_3:57801635-57801654 | None:intergenic | 35.0% | |
| CCTGATTATATGCATCCATT+TGG | + | chr1_3:57801632-57801651 | Msa0128170:intron | 35.0% | |
| TGGATGTCTTTATTGCAATG+TGG | + | chr1_3:57801671-57801690 | Msa0128170:intron | 35.0% | |
| AGTTCAAGGAAAAAATGGCT+TGG | - | chr1_3:57802091-57802110 | None:intergenic | 35.0% | |
| TGATATTTACAGGAGTTGTC+TGG | + | chr1_3:57802186-57802205 | Msa0128170:intron | 35.0% | |
| GATATTTACAGGAGTTGTCT+GGG | + | chr1_3:57802187-57802206 | Msa0128170:intron | 35.0% | |
| AGGTTATTCATTGATGCCAT+TGG | + | chr1_3:57802270-57802289 | Msa0128170:intron | 35.0% | |
| CAGAATCAAATTTGAGCCAA+TGG | - | chr1_3:57802289-57802308 | None:intergenic | 35.0% | |
| CGTAATCACATGATTTCTCT+TGG | + | chr1_3:57802658-57802677 | Msa0128170:intron | 35.0% | |
| TTTCTCTTGGAAAAATCTGG+TGG | + | chr1_3:57802671-57802690 | Msa0128170:intron | 35.0% | |
| TTACAAGTCCTGAAAAAGGA+TGG | + | chr1_3:57802753-57802772 | Msa0128170:CDS | 35.0% | |
| ! | ATTTTATCTCTCTCCCTTCA+GGG | + | chr1_3:57802977-57802996 | Msa0128170:intron | 35.0% |
| AGCTATTCAAGTACATGGTT+TGG | + | chr1_3:57803144-57803163 | Msa0128170:CDS | 35.0% | |
| ! | ATCGATGAAAAAGCTTTTCC+TGG | + | chr1_3:57803178-57803197 | Msa0128170:CDS | 35.0% |
| ATCAAATCCAAGTCTACAAG+TGG | - | chr1_3:57803279-57803298 | None:intergenic | 35.0% | |
| ! | GCTATTTCCTGAAGATTACA+AGG | - | chr1_3:57803370-57803389 | None:intergenic | 35.0% |
| ! | TATGAACTTGAAAGCATACC+AGG | - | chr1_3:57803498-57803517 | None:intergenic | 35.0% |
| TGAACTGCAATTCCATTGAA+AGG | - | chr1_3:57803525-57803544 | None:intergenic | 35.0% | |
| TTAAATGGGTAGTGAAAGGA+TGG | + | chr1_3:57803636-57803655 | Msa0128170:intron | 35.0% | |
| !! | TTCCTTGAATGCTTTGGTTT+TGG | + | chr1_3:57803779-57803798 | Msa0128170:intron | 35.0% |
| ! | AACCAAAACCAAAGCATTCA+AGG | - | chr1_3:57803784-57803803 | None:intergenic | 35.0% |
| !!! | GAATGCTTTGGTTTTGGTTT+TGG | + | chr1_3:57803785-57803804 | Msa0128170:intron | 35.0% |
| ACATAAATATGAGAACCCAG+AGG | + | chr1_3:57803872-57803891 | Msa0128170:CDS | 35.0% | |
| TTTCACTTATCCTGAAGAAG+AGG | + | chr1_3:57803896-57803915 | Msa0128170:CDS | 35.0% | |
| !! | GAATATACACAGGTATTGAG+TGG | + | chr1_3:57804493-57804512 | Msa0128170:intron | 35.0% |
| TGTCGGCAAAAATGATATGA+TGG | - | chr1_3:57804582-57804601 | None:intergenic | 35.0% | |
| ! | CTCCAAACTTTTAATCGAAG+TGG | + | chr1_3:57804670-57804689 | Msa0128170:CDS | 35.0% |
| TGGATTCCAACAAATTCAAC+TGG | + | chr1_3:57804690-57804709 | Msa0128170:CDS | 35.0% | |
| GGATATCCAGTTGAATTTGT+TGG | - | chr1_3:57804699-57804718 | None:intergenic | 35.0% | |
| AATAGTTGAAGATGAAGCTG+CGG | + | chr1_3:57804744-57804763 | Msa0128170:CDS | 35.0% | |
| TGTACAAGTTTGTCCAGTAT+AGG | - | chr1_3:57804996-57805015 | None:intergenic | 35.0% | |
| CAAACTTGTACAAGCAAAGT+TGG | + | chr1_3:57805004-57805023 | Msa0128170:CDS | 35.0% | |
| !! | GATTGTTGTGTTTTGTTCCT+TGG | - | chr1_3:57805036-57805055 | None:intergenic | 35.0% |
| TGTATTTATATCAGCAGGTC+GGG | - | chr1_3:57805092-57805111 | None:intergenic | 35.0% | |
| GTGTATTTATATCAGCAGGT+CGG | - | chr1_3:57805093-57805112 | None:intergenic | 35.0% | |
| TCGTAGAATTAGTGATGGTT+TGG | + | chr1_3:57805172-57805191 | Msa0128170:three_prime_UTR | 35.0% | |
| ! | ATCGAGAGAAGCGTATTTAG+GGG | - | chr1_3:57796270-57796289 | None:intergenic | 40.0% |
| ! | CATCGAGAGAAGCGTATTTA+GGG | - | chr1_3:57796271-57796290 | None:intergenic | 40.0% |
| ! | TCATCGAGAGAAGCGTATTT+AGG | - | chr1_3:57796272-57796291 | None:intergenic | 40.0% |
| CAATAAGTTCATCAGCGCTA+CGG | + | chr1_3:57796526-57796545 | Msa0128170:CDS | 40.0% | |
| ACACTGACATTTCTGATCGA+AGG | + | chr1_3:57796570-57796589 | Msa0128170:CDS | 40.0% | |
| CTGCGTGTTAGTGTTATGTT+CGG | + | chr1_3:57796647-57796666 | Msa0128170:intron | 40.0% | |
| TTCAGGGATGGAGACTAATA+TGG | + | chr1_3:57796775-57796794 | Msa0128170:CDS | 40.0% | |
| CTTAAAAATCGGCATTGCTC+CGG | - | chr1_3:57797391-57797410 | None:intergenic | 40.0% | |
| TCCTCTTTCTATCAGGCATA+TGG | + | chr1_3:57797509-57797528 | Msa0128170:intron | 40.0% | |
| TCCATATGCCTGATAGAAAG+AGG | - | chr1_3:57797513-57797532 | None:intergenic | 40.0% | |
| ATCAGTCAACATTTCAAGCC+AGG | + | chr1_3:57797644-57797663 | Msa0128170:intron | 40.0% | |
| TCAGTCAACATTTCAAGCCA+GGG | + | chr1_3:57797645-57797664 | Msa0128170:intron | 40.0% | |
| ATTTCAAGCCAGGGGAAATA+TGG | + | chr1_3:57797654-57797673 | Msa0128170:intron | 40.0% | |
| ATAACATGGTATGAGACCCT+TGG | + | chr1_3:57797723-57797742 | Msa0128170:intron | 40.0% | |
| TAGACTTGAACAGTTGTGAG+GGG | - | chr1_3:57798144-57798163 | None:intergenic | 40.0% | |
| !! | GTGCTTGTTGGTATTTTCCA+TGG | - | chr1_3:57798208-57798227 | None:intergenic | 40.0% |
| TATTATGAAAGACGGTGGCA+TGG | - | chr1_3:57798240-57798259 | None:intergenic | 40.0% | |
| ! | GCATTGATGTTACAGGTACA+AGG | + | chr1_3:57798370-57798389 | Msa0128170:intron | 40.0% |
| ! | GTTTTGCAGGTTTCGATTAC+AGG | - | chr1_3:57798445-57798464 | None:intergenic | 40.0% |
| CAATCCAACACATTGAGAGA+AGG | + | chr1_3:57798498-57798517 | Msa0128170:intron | 40.0% | |
| ATCCAACACATTGAGAGAAG+GGG | + | chr1_3:57798500-57798519 | Msa0128170:intron | 40.0% | |
| !!! | GTTTTTTACAGCAAACCCGT+TGG | + | chr1_3:57798567-57798586 | Msa0128170:intron | 40.0% |
| CAGCCCTTGGAATAAATTCA+TGG | - | chr1_3:57798777-57798796 | None:intergenic | 40.0% | |
| ATTCTTATGCGAGAGTGAGA+GGG | - | chr1_3:57798808-57798827 | None:intergenic | 40.0% | |
| TATTCTTATGCGAGAGTGAG+AGG | - | chr1_3:57798809-57798828 | None:intergenic | 40.0% | |
| TCTCACTCTCGCATAAGAAT+AGG | + | chr1_3:57798808-57798827 | Msa0128170:intron | 40.0% | |
| CCGTGTCTCTTAAAACTACT+AGG | + | chr1_3:57798951-57798970 | Msa0128170:intron | 40.0% | |
| GACTGTCATCCTATAAAGCA+AGG | - | chr1_3:57799286-57799305 | None:intergenic | 40.0% | |
| ATCAATACAAGTGAGAGCAG+AGG | + | chr1_3:57799416-57799435 | Msa0128170:CDS | 40.0% | |
| ! | CCTTAAGCAGTTGGATTTTC+CGG | + | chr1_3:57799449-57799468 | Msa0128170:CDS | 40.0% |
| GGAAAAAAGGAATGAGCAAG+TGG | + | chr1_3:57799705-57799724 | Msa0128170:intron | 40.0% | |
| TGAGCAAGTGGAAGAAATAG+AGG | + | chr1_3:57799717-57799736 | Msa0128170:intron | 40.0% | |
| GAAATAGAGGAAAATGGGAG+GGG | + | chr1_3:57799730-57799749 | Msa0128170:intron | 40.0% | |
| TACTAAACCCTCCTCATTTG+GGG | + | chr1_3:57799784-57799803 | Msa0128170:intron | 40.0% | |
| ! | ATTGTATTGGAGGAGGGTTT+TGG | + | chr1_3:57799817-57799836 | Msa0128170:intron | 40.0% |
| ! | TTGTATTGGAGGAGGGTTTT+GGG | + | chr1_3:57799818-57799837 | Msa0128170:intron | 40.0% |
| TTGAGGGGTGGAAAATATGA+GGG | - | chr1_3:57799991-57800010 | None:intergenic | 40.0% | |
| TTTGAGGGGTGGAAAATATG+AGG | - | chr1_3:57799992-57800011 | None:intergenic | 40.0% | |
| GTCAACATCTTAAAGGGACA+AGG | - | chr1_3:57800309-57800328 | None:intergenic | 40.0% | |
| !! | CAGTTTTGTAAGGACGAGTT+AGG | - | chr1_3:57800387-57800406 | None:intergenic | 40.0% |
| CTAACTCGTCCTTACAAAAC+TGG | + | chr1_3:57800385-57800404 | Msa0128170:intron | 40.0% | |
| !! | CCTTACAAGCCAGTTTTGTA+AGG | - | chr1_3:57800397-57800416 | None:intergenic | 40.0% |
| !! | CCTTACAAAACTGGCTTGTA+AGG | + | chr1_3:57800394-57800413 | Msa0128170:intron | 40.0% |
| !! | TTCATTGTGTTGGCTTTGAG+GGG | - | chr1_3:57800488-57800507 | None:intergenic | 40.0% |
| !! | CTTCATTGTGTTGGCTTTGA+GGG | - | chr1_3:57800489-57800508 | None:intergenic | 40.0% |
| CTGCAATTAAGGCTAACCAA+AGG | + | chr1_3:57800519-57800538 | Msa0128170:intron | 40.0% | |
| CTAACCAAAGGTCGCAATTT+AGG | + | chr1_3:57800531-57800550 | Msa0128170:intron | 40.0% | |
| TGGAAATTCCGCCTTAATTG+CGG | - | chr1_3:57800571-57800590 | None:intergenic | 40.0% | |
| CAATTCTGGATGCCTATCTT+AGG | + | chr1_3:57800648-57800667 | Msa0128170:intron | 40.0% | |
| !! | TTGCTGACTTGGCTAATAAC+AGG | + | chr1_3:57800765-57800784 | Msa0128170:intron | 40.0% |
| CATGAGTTGCTGCCTATAAT+AGG | - | chr1_3:57801026-57801045 | None:intergenic | 40.0% | |
| GGCAGCAACTCATGAATTTA+TGG | + | chr1_3:57801032-57801051 | Msa0128170:intron | 40.0% | |
| GAACACCGAGTAAATCTTCT+GGG | - | chr1_3:57801271-57801290 | None:intergenic | 40.0% | |
| AGAACACCGAGTAAATCTTC+TGG | - | chr1_3:57801272-57801291 | None:intergenic | 40.0% | |
| !! | TTTACTCGGTGTTCTTCGTA+AGG | + | chr1_3:57801277-57801296 | Msa0128170:intron | 40.0% |
| TGTGCCACATCTACTTAATG+TGG | - | chr1_3:57801383-57801402 | None:intergenic | 40.0% | |
| ! | GGTGCATTCATGGAAAGTAT+AGG | - | chr1_3:57801602-57801621 | None:intergenic | 40.0% |
| ATATAATCAGGAGAACAGGG+TGG | - | chr1_3:57801623-57801642 | None:intergenic | 40.0% | |
| ACGCACCATTTATGCTAAAC+TGG | + | chr1_3:57801775-57801794 | Msa0128170:intron | 40.0% | |
| CGCACCATTTATGCTAAACT+GGG | + | chr1_3:57801776-57801795 | Msa0128170:intron | 40.0% | |
| TCATCTGAAAATGTGATGCC+TGG | + | chr1_3:57801954-57801973 | Msa0128170:intron | 40.0% | |
| ATCATAGTCAAAGCCACAGA+AGG | - | chr1_3:57802157-57802176 | None:intergenic | 40.0% | |
| CTGGTAAGACTTCATCTATC+AGG | - | chr1_3:57802223-57802242 | None:intergenic | 40.0% | |
| TCTCTCTAACCATTCTCTTG+AGG | + | chr1_3:57802250-57802269 | Msa0128170:CDS | 40.0% | |
| TGCAGCCTACAAATATTCAG+AGG | - | chr1_3:57802364-57802383 | None:intergenic | 40.0% | |
| CATCTTCTGCAAGACATTTC+AGG | + | chr1_3:57802423-57802442 | Msa0128170:CDS | 40.0% | |
| TATTTACTGTACCACGCCAT+AGG | + | chr1_3:57802501-57802520 | Msa0128170:intron | 40.0% | |
| TTTGTAATTCTCCTATGGCG+TGG | - | chr1_3:57802515-57802534 | None:intergenic | 40.0% | |
| TCGAAAACAAGTTGTCAGCT+TGG | - | chr1_3:57802574-57802593 | None:intergenic | 40.0% | |
| GGAATCAAGAACAGCTTCTA+GGG | - | chr1_3:57802793-57802812 | None:intergenic | 40.0% | |
| TGGAATCAAGAACAGCTTCT+AGG | - | chr1_3:57802794-57802813 | None:intergenic | 40.0% | |
| !! | TTGCAGAACTGCTTTTGTAC+TGG | - | chr1_3:57802814-57802833 | None:intergenic | 40.0% |
| AGTACAAAAGCAGTTCTGCA+AGG | + | chr1_3:57802813-57802832 | Msa0128170:CDS | 40.0% | |
| ! | CATTTTATCTCTCTCCCTTC+AGG | + | chr1_3:57802976-57802995 | Msa0128170:intron | 40.0% |
| ! | GATCAGTTCCTCCTATTTTC+AGG | + | chr1_3:57803106-57803125 | Msa0128170:CDS | 40.0% |
| TCCTCAGCTATTCAAGTACA+TGG | + | chr1_3:57803139-57803158 | Msa0128170:CDS | 40.0% | |
| ACCATGTACTTGAATAGCTG+AGG | - | chr1_3:57803143-57803162 | None:intergenic | 40.0% | |
| ! | TCCTTGCCTCAGTGATTTTT+GGG | - | chr1_3:57803255-57803274 | None:intergenic | 40.0% |
| ! | ATCCTTGCCTCAGTGATTTT+TGG | - | chr1_3:57803256-57803275 | None:intergenic | 40.0% |
| AACTTATGAGGAATGCAGTG+AGG | - | chr1_3:57803346-57803365 | None:intergenic | 40.0% | |
| ! | GAAATAGCTGCTTCCTTTTC+TGG | + | chr1_3:57803382-57803401 | Msa0128170:CDS | 40.0% |
| TCTAACACTACCACCAGAAA+AGG | - | chr1_3:57803398-57803417 | None:intergenic | 40.0% | |
| !! | TTTTCTGGTGGTAGTGTTAG+AGG | + | chr1_3:57803397-57803416 | Msa0128170:CDS | 40.0% |
| ATCTAGACCTGCATTTGTTC+CGG | + | chr1_3:57803426-57803445 | Msa0128170:CDS | 40.0% | |
| ! | TCGTCTAGCTTGATTTCCAA+AGG | + | chr1_3:57803713-57803732 | Msa0128170:intron | 40.0% |
| CAGGATAAGTGAAATCCTCT+GGG | - | chr1_3:57803890-57803909 | None:intergenic | 40.0% | |
| TCAGGATAAGTGAAATCCTC+TGG | - | chr1_3:57803891-57803910 | None:intergenic | 40.0% | |
| GTGTTGTAAACCTCTTCTTC+AGG | - | chr1_3:57803909-57803928 | None:intergenic | 40.0% | |
| AGAGGTTTACAACACCGAAT+TGG | + | chr1_3:57803914-57803933 | Msa0128170:CDS | 40.0% | |
| GAGGTTTACAACACCGAATT+GGG | + | chr1_3:57803915-57803934 | Msa0128170:CDS | 40.0% | |
| TACAACACCGAATTGGGTTA+AGG | + | chr1_3:57803921-57803940 | Msa0128170:CDS | 40.0% | |
| ACAAACATGTGCACTTCTCT+CGG | - | chr1_3:57804041-57804060 | None:intergenic | 40.0% | |
| TGGGTAGGTCAAATACTCAA+AGG | + | chr1_3:57804398-57804417 | Msa0128170:CDS | 40.0% | |
| GGGTAGGTCAAATACTCAAA+GGG | + | chr1_3:57804399-57804418 | Msa0128170:CDS | 40.0% | |
| ! | GGTATTGAGTGGCATCATAT+TGG | + | chr1_3:57804504-57804523 | Msa0128170:intron | 40.0% |
| AACTGGATATCCAGTTCCTA+AGG | + | chr1_3:57804707-57804726 | Msa0128170:CDS | 40.0% | |
| ACTTCTTGCTTGATGAGGTT+GGG | + | chr1_3:57804770-57804789 | Msa0128170:CDS | 40.0% | |
| CTTCTCTATGCATCTCCTAA+TGG | + | chr1_3:57804889-57804908 | Msa0128170:intron | 40.0% | |
| GTGTCTTGATCCAATTCCAT+TGG | + | chr1_3:57804965-57804984 | Msa0128170:CDS | 40.0% | |
| ACAAGTTTGTCCAGTATAGG+AGG | - | chr1_3:57804993-57805012 | None:intergenic | 40.0% | |
| AGCAAAGTTGGCTAAAACCA+AGG | + | chr1_3:57805016-57805035 | Msa0128170:CDS | 40.0% | |
| CTTAAGTCTCGACACAAGAT+CGG | - | chr1_3:57805316-57805335 | None:intergenic | 40.0% | |
| !!! | GCTCGTTTTTGAAGTTTGCC+CGG | - | chr1_3:57795986-57796005 | None:intergenic | 45.0% |
| GTATTTAGGGGAAGTGATCG+CGG | - | chr1_3:57796258-57796277 | None:intergenic | 45.0% | |
| TTGATCGGGATCGAATTCAG+AGG | - | chr1_3:57796303-57796322 | None:intergenic | 45.0% | |
| GCGCTACGGATACTATAAAG+AGG | + | chr1_3:57796540-57796559 | Msa0128170:CDS | 45.0% | |
| ! | TTTCTGATCGAAGGTGTGTC+CGG | + | chr1_3:57796579-57796598 | Msa0128170:intron | 45.0% |
| TATGGAACAGCTTCTCGACA+AGG | + | chr1_3:57796793-57796812 | Msa0128170:CDS | 45.0% | |
| ATGCACTTGCCAAGTCTATC+AGG | - | chr1_3:57797330-57797349 | None:intergenic | 45.0% | |
| !!! | CGGAGCAATGCCGATTTTTA+AGG | + | chr1_3:57797389-57797408 | Msa0128170:CDS | 45.0% |
| CAGTCAACATTTCAAGCCAG+GGG | + | chr1_3:57797646-57797665 | Msa0128170:intron | 45.0% | |
| TTTGCCCATGTTGGGAAAAC+TGG | - | chr1_3:57797814-57797833 | None:intergenic | 45.0% | |
| !! | GAAGCTCATTGACTCTGATG+TGG | + | chr1_3:57797850-57797869 | Msa0128170:intron | 45.0% |
| AAAGCCTATACGTGAGTGAG+AGG | + | chr1_3:57798034-57798053 | Msa0128170:intron | 45.0% | |
| AAGCCTATACGTGAGTGAGA+GGG | + | chr1_3:57798035-57798054 | Msa0128170:intron | 45.0% | |
| TCCACCAGTAACTATCACCA+TGG | + | chr1_3:57798188-57798207 | Msa0128170:intron | 45.0% | |
| TCCATGGTGATAGTTACTGG+TGG | - | chr1_3:57798192-57798211 | None:intergenic | 45.0% | |
| TTGCAGGTTTCGATTACAGG+AGG | - | chr1_3:57798442-57798461 | None:intergenic | 45.0% | |
| TCCAACACATTGAGAGAAGG+GGG | + | chr1_3:57798501-57798520 | Msa0128170:intron | 45.0% | |
| TAAGGAGCTGCAGTTCACAA+AGG | + | chr1_3:57798658-57798677 | Msa0128170:intron | 45.0% | |
| AAGGAGCTGCAGTTCACAAA+GGG | + | chr1_3:57798659-57798678 | Msa0128170:intron | 45.0% | |
| TGCAGTTCACAAAGGGTGAA+GGG | + | chr1_3:57798666-57798685 | Msa0128170:intron | 45.0% | |
| CAAAGGGTGAAGGGAGAAAA+CGG | + | chr1_3:57798675-57798694 | Msa0128170:intron | 45.0% | |
| ACGGTGTGTAAGAGGAAAAC+AGG | + | chr1_3:57798694-57798713 | Msa0128170:intron | 45.0% | |
| CGGTGTGTAAGAGGAAAACA+GGG | + | chr1_3:57798695-57798714 | Msa0128170:intron | 45.0% | |
| GGTGTGTAAGAGGAAAACAG+GGG | + | chr1_3:57798696-57798715 | Msa0128170:intron | 45.0% | |
| ! | ATAGCTTGCAGACAGACCAA+GGG | - | chr1_3:57799144-57799163 | None:intergenic | 45.0% |
| !! | ATGCATGTTCAAGGGGTGTT+TGG | + | chr1_3:57799227-57799246 | Msa0128170:intron | 45.0% |
| !! | TGCATGTTCAAGGGGTGTTT+GGG | + | chr1_3:57799228-57799247 | Msa0128170:intron | 45.0% |
| !! | GAGAGGTGTCCTTGCTTTAT+AGG | + | chr1_3:57799274-57799293 | Msa0128170:intron | 45.0% |
| AATCTGAGAATAGCTTCCCC+TGG | - | chr1_3:57799392-57799411 | None:intergenic | 45.0% | |
| CCGGAAAATCCAACTGCTTA+AGG | - | chr1_3:57799452-57799471 | None:intergenic | 45.0% | |
| ! | ATTAAAAGGAGGGCACACGA+AGG | - | chr1_3:57799611-57799630 | None:intergenic | 45.0% |
| !! | TTGGGCTTTGTTTGCGAGTT+TGG | + | chr1_3:57799659-57799678 | Msa0128170:intron | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr1_3:57799663-57799682 | Msa0128170:intron | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | + | chr1_3:57799664-57799683 | Msa0128170:intron | 45.0% |
| ACTAAACCCTCCTCATTTGG+GGG | + | chr1_3:57799785-57799804 | Msa0128170:intron | 45.0% | |
| TAAGTTCCCCCAAATGAGGA+GGG | - | chr1_3:57799794-57799813 | None:intergenic | 45.0% | |
| TTAAGTTCCCCCAAATGAGG+AGG | - | chr1_3:57799795-57799814 | None:intergenic | 45.0% | |
| ! | TGTATTGGAGGAGGGTTTTG+GGG | + | chr1_3:57799819-57799838 | Msa0128170:intron | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | - | chr1_3:57799664-57799683 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | - | chr1_3:57799663-57799682 | None:intergenic | 45.0% |
| !! | CAAGGCTTTGTTTGCGAGTT+TGG | - | chr1_3:57800035-57800054 | None:intergenic | 45.0% |
| CAAACTCGCAAACAAAGCCT+TGG | + | chr1_3:57800033-57800052 | Msa0128170:intron | 45.0% | |
| GCTCAGCTGAATGTCTGTAA+TGG | - | chr1_3:57800186-57800205 | None:intergenic | 45.0% | |
| AGCCCCGAGGAAATAAACAA+TGG | + | chr1_3:57800203-57800222 | Msa0128170:CDS | 45.0% | |
| GAGAAGATGCTGAAGGAGAA+AGG | - | chr1_3:57800238-57800257 | None:intergenic | 45.0% | |
| TCCTTCAGCATCTTCTCACA+AGG | + | chr1_3:57800241-57800260 | Msa0128170:CDS | 45.0% | |
| ACCTTGTGAGAAGATGCTGA+AGG | - | chr1_3:57800245-57800264 | None:intergenic | 45.0% | |
| ACATCTTAAAGGGACAAGGG+AGG | - | chr1_3:57800305-57800324 | None:intergenic | 45.0% | |
| !! | CAAAACTGGCTTGTAAGGTG+AGG | + | chr1_3:57800399-57800418 | Msa0128170:intron | 45.0% |
| ! | AGAGTGCTATCTATCCGATG+TGG | + | chr1_3:57800450-57800469 | Msa0128170:intron | 45.0% |
| GAGTGCTATCTATCCGATGT+GGG | + | chr1_3:57800451-57800470 | Msa0128170:intron | 45.0% | |
| !! | TCATTGTGTTGGCTTTGAGG+GGG | - | chr1_3:57800487-57800506 | None:intergenic | 45.0% |
| !! | CCTTCATTGTGTTGGCTTTG+AGG | - | chr1_3:57800490-57800509 | None:intergenic | 45.0% |
| CCTCAAAGCCAACACAATGA+AGG | + | chr1_3:57800487-57800506 | Msa0128170:intron | 45.0% | |
| ! | AGCCAACACAATGAAGGTGT+TGG | + | chr1_3:57800493-57800512 | Msa0128170:intron | 45.0% |
| CTCCAACACCTTCATTGTGT+TGG | - | chr1_3:57800498-57800517 | None:intergenic | 45.0% | |
| !! | CAACACAATGAAGGTGTTGG+AGG | + | chr1_3:57800496-57800515 | Msa0128170:intron | 45.0% |
| ! | GGCTCTGATCTGAACAATTC+TGG | + | chr1_3:57800634-57800653 | Msa0128170:intron | 45.0% |
| TCTGGATGCCTATCTTAGGT+TGG | + | chr1_3:57800652-57800671 | Msa0128170:intron | 45.0% | |
| CTGGATGCCTATCTTAGGTT+GGG | + | chr1_3:57800653-57800672 | Msa0128170:intron | 45.0% | |
| AGGATGACCCAACCTAAGAT+AGG | - | chr1_3:57800663-57800682 | None:intergenic | 45.0% | |
| ! | TGCCAGGAATTTTGCAACTG+CGG | + | chr1_3:57801220-57801239 | Msa0128170:intron | 45.0% |
| AGGCCTGAATGTGTTGAAAG+TGG | + | chr1_3:57801576-57801595 | Msa0128170:intron | 45.0% | |
| ! | AGGCCACTTTCAACACATTC+AGG | - | chr1_3:57801582-57801601 | None:intergenic | 45.0% |
| ACAAAAGCAGTTCTGCAAGG+AGG | + | chr1_3:57802816-57802835 | Msa0128170:CDS | 45.0% | |
| ! | AATTTTGCGGAAGCCCTGAA+GGG | - | chr1_3:57802993-57803012 | None:intergenic | 45.0% |
| ! | AAATTTTGCGGAAGCCCTGA+AGG | - | chr1_3:57802994-57803013 | None:intergenic | 45.0% |
| ! | CAAGTACATGGTTTGGCAGA+AGG | + | chr1_3:57803151-57803170 | Msa0128170:CDS | 45.0% |
| TGTCGTCCCAAAAATCACTG+AGG | + | chr1_3:57803246-57803265 | Msa0128170:CDS | 45.0% | |
| TCCCAAAAATCACTGAGGCA+AGG | + | chr1_3:57803251-57803270 | Msa0128170:intron | 45.0% | |
| CAAGGATCCACTTGTAGACT+TGG | + | chr1_3:57803269-57803288 | Msa0128170:intron | 45.0% | |
| GAATGCAGTGAGGATATGGA+AGG | - | chr1_3:57803336-57803355 | None:intergenic | 45.0% | |
| TGAGGAATGCAGTGAGGATA+TGG | - | chr1_3:57803340-57803359 | None:intergenic | 45.0% | |
| ! | ATAGCTGCTTCCTTTTCTGG+TGG | + | chr1_3:57803385-57803404 | Msa0128170:CDS | 45.0% |
| TCTAGACCTGCATTTGTTCC+GGG | + | chr1_3:57803427-57803446 | Msa0128170:CDS | 45.0% | |
| ATTTCTCCCGGAACAAATGC+AGG | - | chr1_3:57803436-57803455 | None:intergenic | 45.0% | |
| TGTAGAAAATTCCGGTCAGC+TGG | + | chr1_3:57803457-57803476 | Msa0128170:CDS | 45.0% | |
| ! | GGAATTTTTCACCAGCTGAC+CGG | - | chr1_3:57803471-57803490 | None:intergenic | 45.0% |
| TGGTGAAAAATTCCTGCACC+TGG | + | chr1_3:57803477-57803496 | Msa0128170:CDS | 45.0% | |
| ATGGGTAGTGAAAGGATGGT+AGG | + | chr1_3:57803640-57803659 | Msa0128170:intron | 45.0% | |
| TGGGTAGTGAAAGGATGGTA+GGG | + | chr1_3:57803641-57803660 | Msa0128170:intron | 45.0% | |
| !! | GTGAAGCTTGCTAGTTCCTT+TGG | - | chr1_3:57803732-57803751 | None:intergenic | 45.0% |
| GTGCTCTTCCTTGAATGCTT+TGG | + | chr1_3:57803773-57803792 | Msa0128170:intron | 45.0% | |
| AGGCTGACCTTAACCCAATT+CGG | - | chr1_3:57803931-57803950 | None:intergenic | 45.0% | |
| ! | GTGAAGCAGATTTTGCCTCA+AGG | + | chr1_3:57804298-57804317 | Msa0128170:CDS | 45.0% |
| TTCCGTTACTATCAGTCCTG+CGG | - | chr1_3:57804336-57804355 | None:intergenic | 45.0% | |
| CATCAAGAAGCAATCCCTTG+CGG | + | chr1_3:57804365-57804384 | Msa0128170:CDS | 45.0% | |
| ATCAAGAAGCAATCCCTTGC+GGG | + | chr1_3:57804366-57804385 | Msa0128170:CDS | 45.0% | |
| GGTCAAATACTCAAAGGGCA+AGG | + | chr1_3:57804404-57804423 | Msa0128170:CDS | 45.0% | |
| CTAGATGTGTTTCCAGAAGC+TGG | - | chr1_3:57804432-57804451 | None:intergenic | 45.0% | |
| ! | CATTTTTGCCGACAAACTGC+AGG | + | chr1_3:57804588-57804607 | Msa0128170:intron | 45.0% |
| AACAGACTCCTGCAGTTTGT+CGG | - | chr1_3:57804599-57804618 | None:intergenic | 45.0% | |
| TTATAGGGGTCCTTAGGAAC+TGG | - | chr1_3:57804720-57804739 | None:intergenic | 45.0% | |
| AGTTCCTAAGGACCCCTATA+AGG | + | chr1_3:57804719-57804738 | Msa0128170:CDS | 45.0% | |
| GTTCCTAAGGACCCCTATAA+GGG | + | chr1_3:57804720-57804739 | Msa0128170:CDS | 45.0% | |
| TTTCCCTTATAGGGGTCCTT+AGG | - | chr1_3:57804726-57804745 | None:intergenic | 45.0% | |
| ! | GGTTGACTTCTTGCTTGATG+AGG | + | chr1_3:57804765-57804784 | Msa0128170:CDS | 45.0% |
| GACTTCTTGCTTGATGAGGT+TGG | + | chr1_3:57804769-57804788 | Msa0128170:CDS | 45.0% | |
| GAGAAGACAAGGAGAAGCTA+GGG | - | chr1_3:57804875-57804894 | None:intergenic | 45.0% | |
| AGAGAAGACAAGGAGAAGCT+AGG | - | chr1_3:57804876-57804895 | None:intergenic | 45.0% | |
| GGAGATGCATAGAGAAGACA+AGG | - | chr1_3:57804886-57804905 | None:intergenic | 45.0% | |
| ATAGGAGGCTCCAATGGAAT+TGG | - | chr1_3:57804978-57804997 | None:intergenic | 45.0% | |
| TTTATATCAGCAGGTCGGGA+AGG | - | chr1_3:57805088-57805107 | None:intergenic | 45.0% | |
| !!! | AAAAAAAATAGTTTTTTAAT+TGG | + | chr1_3:57799173-57799192 | Msa0128170:intron | 5.0% |
| !!! | AAAAAAATAGTTTTTTAATT+GGG | + | chr1_3:57799174-57799193 | Msa0128170:intron | 5.0% |
| AGGGTCTGGAGAGTAGAAAC+TGG | - | chr1_3:57796219-57796238 | None:intergenic | 50.0% | |
| TTGGAGGAATTGGAAGGGTC+TGG | - | chr1_3:57796233-57796252 | None:intergenic | 50.0% | |
| CGGAGTTGGAGGAATTGGAA+GGG | - | chr1_3:57796238-57796257 | None:intergenic | 50.0% | |
| TGTCAGTGTCAGACACACAC+CGG | - | chr1_3:57796601-57796620 | None:intergenic | 50.0% | |
| TGGCAAGTGCATCAAGTCAG+AGG | + | chr1_3:57797338-57797357 | Msa0128170:CDS | 50.0% | |
| ! | GACGCAGTCAGGTTTTACAC+CGG | + | chr1_3:57797369-57797388 | Msa0128170:CDS | 50.0% |
| ACATGGTATGAGACCCTTGG+CGG | + | chr1_3:57797726-57797745 | Msa0128170:intron | 50.0% | |
| AGCATATGGCTATCCGCCAA+GGG | - | chr1_3:57797742-57797761 | None:intergenic | 50.0% | |
| TAGCATATGGCTATCCGCCA+AGG | - | chr1_3:57797743-57797762 | None:intergenic | 50.0% | |
| TGACCCTCTCACTCACGTAT+AGG | - | chr1_3:57798041-57798060 | None:intergenic | 50.0% | |
| GAGGGTCAATTATCAGCCCT+TGG | + | chr1_3:57798053-57798072 | Msa0128170:intron | 50.0% | |
| TGGTAGTAGCTGGTGCTTGT+TGG | - | chr1_3:57798220-57798239 | None:intergenic | 50.0% | |
| TCCCCCTTCTCTCAATGTGT+TGG | - | chr1_3:57798505-57798524 | None:intergenic | 50.0% | |
| CTGCAGTTCACAAAGGGTGA+AGG | + | chr1_3:57798665-57798684 | Msa0128170:intron | 50.0% | |
| GGGAGAAAACGGTGTGTAAG+AGG | + | chr1_3:57798686-57798705 | Msa0128170:intron | 50.0% | |
| !! | GATAGAAGTGTCCTACCGAG+AGG | + | chr1_3:57799103-57799122 | Msa0128170:intron | 50.0% |
| ! | CATAGCTTGCAGACAGACCA+AGG | - | chr1_3:57799145-57799164 | None:intergenic | 50.0% |
| TGTCACCCAACACTGCAGTT+TGG | + | chr1_3:57799252-57799271 | Msa0128170:intron | 50.0% | |
| CCTCTCCAAACTGCAGTGTT+GGG | - | chr1_3:57799260-57799279 | None:intergenic | 50.0% | |
| ACCTCTCCAAACTGCAGTGT+TGG | - | chr1_3:57799261-57799280 | None:intergenic | 50.0% | |
| TGCTGTGCTCCTTAAGCAGT+TGG | + | chr1_3:57799440-57799459 | Msa0128170:CDS | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | + | chr1_3:57799662-57799681 | Msa0128170:intron | 50.0% |
| TTTGCGAGTTTGGAGGGGAA+GGG | + | chr1_3:57799669-57799688 | Msa0128170:intron | 50.0% | |
| AGGGGAAGGCTTGGGAAAAA+AGG | + | chr1_3:57799692-57799711 | Msa0128170:intron | 50.0% | |
| ATAGAGGAAAATGGGAGGGG+AGG | + | chr1_3:57799733-57799752 | Msa0128170:intron | 50.0% | |
| TAGAGGAAAATGGGAGGGGA+GGG | + | chr1_3:57799734-57799753 | Msa0128170:intron | 50.0% | |
| ! | AAAATGGGAGGGGAGGGTTT+TGG | + | chr1_3:57799740-57799759 | Msa0128170:intron | 50.0% |
| ! | AAATGGGAGGGGAGGGTTTT+GGG | + | chr1_3:57799741-57799760 | Msa0128170:intron | 50.0% |
| !! | GTATTGGAGGAGGGTTTTGG+GGG | + | chr1_3:57799820-57799839 | Msa0128170:intron | 50.0% |
| !!! | TATTGGAGGAGGGTTTTGGG+GGG | + | chr1_3:57799821-57799840 | Msa0128170:intron | 50.0% |
| ! | AGGGGAAGGAAAGGCTTTGA+GGG | - | chr1_3:57800007-57800026 | None:intergenic | 50.0% |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | - | chr1_3:57799662-57799681 | None:intergenic | 50.0% |
| TCTTAAAGGGACAAGGGAGG+AGG | - | chr1_3:57800302-57800321 | None:intergenic | 50.0% | |
| ! | GGGTGGATTTAGTCCCACAT+CGG | - | chr1_3:57800467-57800486 | None:intergenic | 50.0% |
| ! | GGTGTTGGAGGCTGCAATTA+AGG | + | chr1_3:57800508-57800527 | Msa0128170:intron | 50.0% |
| GTCGCCTAAATTGCGACCTT+TGG | - | chr1_3:57800538-57800557 | None:intergenic | 50.0% | |
| AGGTCGCAATTTAGGCGACT+AGG | + | chr1_3:57800539-57800558 | Msa0128170:intron | 50.0% | |
| GGTCGCAATTTAGGCGACTA+GGG | + | chr1_3:57800540-57800559 | Msa0128170:intron | 50.0% | |
| GTCGCAATTTAGGCGACTAG+GGG | + | chr1_3:57800541-57800560 | Msa0128170:intron | 50.0% | |
| CTCCGCAGTTGCAAAATTCC+TGG | - | chr1_3:57801225-57801244 | None:intergenic | 50.0% | |
| ! | CAGGAATTTTGCAACTGCGG+AGG | + | chr1_3:57801223-57801242 | Msa0128170:intron | 50.0% |
| AGAACAGGGTGGTGCATTCA+TGG | - | chr1_3:57801612-57801631 | None:intergenic | 50.0% | |
| TGGTTAGAGAGAGCTGCTTC+TGG | - | chr1_3:57802242-57802261 | None:intergenic | 50.0% | |
| ! | GCTCTGCTCCATCCTTTTTC+AGG | - | chr1_3:57802764-57802783 | None:intergenic | 50.0% |
| ATTGTGCCAGCACTAGGACA+AGG | - | chr1_3:57803204-57803223 | None:intergenic | 50.0% | |
| !! | CCTAGTGCTGGCACAATTGT+CGG | + | chr1_3:57803207-57803226 | Msa0128170:CDS | 50.0% |
| ! | CTTGAAAGCATACCAGGTGC+AGG | - | chr1_3:57803492-57803511 | None:intergenic | 50.0% |
| CGGTGCTTACGTATACCTTG+AGG | - | chr1_3:57804316-57804335 | None:intergenic | 50.0% | |
| ! | AAGGTATACGTAAGCACCGC+AGG | + | chr1_3:57804317-57804336 | Msa0128170:CDS | 50.0% |
| CACCGCAGGACTGATAGTAA+CGG | + | chr1_3:57804331-57804350 | Msa0128170:CDS | 50.0% | |
| ! | TGGGAGAAACAGTGTTGCTG+TGG | + | chr1_3:57804789-57804808 | Msa0128170:CDS | 50.0% |
| AGACAAGGAGAAGCTAGGGA+GGG | - | chr1_3:57804871-57804890 | None:intergenic | 50.0% | |
| AAGACAAGGAGAAGCTAGGG+AGG | - | chr1_3:57804872-57804891 | None:intergenic | 50.0% | |
| TGATTGTCGCTACTGCAGAG+CGG | + | chr1_3:57804943-57804962 | Msa0128170:CDS | 50.0% | |
| TCCATTGGAGCCTCCTATAC+TGG | + | chr1_3:57804980-57804999 | Msa0128170:CDS | 50.0% | |
| TCCAGTATAGGAGGCTCCAA+TGG | - | chr1_3:57804984-57805003 | None:intergenic | 50.0% | |
| GCGGAGTTGGAGGAATTGGA+AGG | - | chr1_3:57796239-57796258 | None:intergenic | 55.0% | |
| GATCGCGGAGTTGGAGGAAT+TGG | - | chr1_3:57796243-57796262 | None:intergenic | 55.0% | |
| GAGGGTCGATTATCAGCCCT+TGG | - | chr1_3:57798790-57798809 | None:intergenic | 55.0% | |
| !! | AGAAGTGTCCTACCGAGAGG+AGG | + | chr1_3:57799106-57799125 | Msa0128170:intron | 55.0% |
| ATTGAGCCGACACCTCCTCT+CGG | - | chr1_3:57799121-57799140 | None:intergenic | 55.0% | |
| CCCAACACTGCAGTTTGGAG+AGG | + | chr1_3:57799257-57799276 | Msa0128170:intron | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+AGG | + | chr1_3:57799668-57799687 | Msa0128170:intron | 55.0% | |
| ! | AATGGGAGGGGAGGGTTTTG+GGG | + | chr1_3:57799742-57799761 | Msa0128170:intron | 55.0% |
| !!! | AGGAGGGTTTTGGGGGGTTT+TGG | + | chr1_3:57799827-57799846 | Msa0128170:intron | 55.0% |
| !!! | AGGGTTTTGGGGGGTTTTGG+AGG | + | chr1_3:57799830-57799849 | Msa0128170:intron | 55.0% |
| !!! | GGGTTTTGGGGGGTTTTGGA+GGG | + | chr1_3:57799831-57799850 | Msa0128170:intron | 55.0% |
| !! | GAAGGAAAGGCTTTGAGGGG+TGG | - | chr1_3:57800003-57800022 | None:intergenic | 55.0% |
| !! | GGGGAAGGAAAGGCTTTGAG+GGG | - | chr1_3:57800006-57800025 | None:intergenic | 55.0% |
| GAGGGGAAGGAAAGGCTTTG+AGG | - | chr1_3:57800008-57800027 | None:intergenic | 55.0% | |
| TTTGCGAGTTTGGAGGGGAG+GGG | - | chr1_3:57800025-57800044 | None:intergenic | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+GGG | - | chr1_3:57799668-57799687 | None:intergenic | 55.0% | |
| TGTTTGCGAGTTTGGAGGGG+AGG | - | chr1_3:57799667-57799686 | None:intergenic | 55.0% | |
| !! | TTGTGTTGGCTTTGAGGGGG+TGG | - | chr1_3:57800484-57800503 | None:intergenic | 55.0% |
| GCAATTTAGGCGACTAGGGG+CGG | + | chr1_3:57800544-57800563 | Msa0128170:intron | 55.0% | |
| ! | CGGAGGAGTACGTGAAGACA+CGG | + | chr1_3:57801240-57801259 | Msa0128170:CDS | 55.0% |
| ! | AGGAGGCATGAACGTCTTGC+TGG | + | chr1_3:57802833-57802852 | Msa0128170:CDS | 55.0% |
| CCGACAATTGTGCCAGCACT+AGG | - | chr1_3:57803210-57803229 | None:intergenic | 55.0% | |
| AAGAAGCAATCCCTTGCGGG+AGG | + | chr1_3:57804369-57804388 | Msa0128170:CDS | 55.0% | |
| GGAAGTGATCGCGGAGTTGG+AGG | - | chr1_3:57796249-57796268 | None:intergenic | 60.0% | |
| AGGGGAAGTGATCGCGGAGT+TGG | - | chr1_3:57796252-57796271 | None:intergenic | 60.0% | |
| AGGCGTATGCAGACGCAGTC+AGG | + | chr1_3:57797358-57797377 | Msa0128170:CDS | 60.0% | |
| GACGGTGGCATGGTAGTAGC+TGG | - | chr1_3:57798230-57798249 | None:intergenic | 60.0% | |
| ! | GTCCTACCGAGAGGAGGTGT+CGG | + | chr1_3:57799112-57799131 | Msa0128170:intron | 60.0% |
| !! | GAGGTGTCGGCTCAATCCCT+TGG | + | chr1_3:57799125-57799144 | Msa0128170:intron | 60.0% |
| CGAGTTTGGAGGGGAAGGGA+GGG | + | chr1_3:57799673-57799692 | Msa0128170:intron | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | + | chr1_3:57799674-57799693 | Msa0128170:intron | 60.0% | |
| !! | ATGGGAGGGGAGGGTTTTGG+GGG | + | chr1_3:57799743-57799762 | Msa0128170:intron | 60.0% |
| TTGGAGGGGAGGGGAAGGAA+AGG | - | chr1_3:57800016-57800035 | None:intergenic | 60.0% | |
| AGACATTCAGCTGAGCCCCG+AGG | + | chr1_3:57800190-57800209 | Msa0128170:CDS | 60.0% | |
| CTAGGGGCGGACCGCAATTA+AGG | + | chr1_3:57800557-57800576 | Msa0128170:intron | 60.0% | |
| !! | TCCTGGCCTTGTCCTAGTGC+TGG | + | chr1_3:57803195-57803214 | Msa0128170:CDS | 60.0% |
| TCCCTTGCGGGAGGAGAAGT+TGG | + | chr1_3:57804378-57804397 | Msa0128170:CDS | 60.0% | |
| CCCAACTTCTCCTCCCGCAA+GGG | - | chr1_3:57804382-57804401 | None:intergenic | 60.0% | |
| CCCTTGCGGGAGGAGAAGTT+GGG | + | chr1_3:57804379-57804398 | Msa0128170:CDS | 60.0% | |
| ACCCAACTTCTCCTCCCGCA+AGG | - | chr1_3:57804383-57804402 | None:intergenic | 60.0% | |
| TGCGGGAGGAGAAGTTGGGT+AGG | + | chr1_3:57804383-57804402 | Msa0128170:CDS | 60.0% | |
| AAGGGCAAGGAGCCAGCTTC+TGG | + | chr1_3:57804417-57804436 | Msa0128170:CDS | 60.0% | |
| GGAGAAGCTAGGGAGGGATG+AGG | - | chr1_3:57804865-57804884 | None:intergenic | 60.0% | |
| AGCCGACACCTCCTCTCGGT+AGG | - | chr1_3:57799117-57799136 | None:intergenic | 65.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | + | chr1_3:57799672-57799691 | Msa0128170:intron | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | + | chr1_3:57799678-57799697 | Msa0128170:intron | 65.0% | |
| GGGAAGGGAGGGGAAGGCTT+GGG | + | chr1_3:57799684-57799703 | Msa0128170:intron | 65.0% | |
| !!! | TGGGAGGGGAGGGTTTTGGG+GGG | + | chr1_3:57799744-57799763 | Msa0128170:intron | 65.0% |
| CGAGTTTGGAGGGGAGGGGA+AGG | - | chr1_3:57800021-57800040 | None:intergenic | 65.0% | |
| GGGGCGGACCGCAATTAAGG+CGG | + | chr1_3:57800560-57800579 | Msa0128170:intron | 65.0% | |
| GCCAGCACTAGGACAAGGCC+AGG | - | chr1_3:57803199-57803218 | None:intergenic | 65.0% | |
| GGGGAAGGGAGGGGAAGGCT+TGG | + | chr1_3:57799683-57799702 | Msa0128170:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 57795970 | 57805400 | 57795970 | ID=Msa0128170;Name=Msa0128170 |
| chr1_3 | mRNA | 57795970 | 57805400 | 57795970 | ID=Msa0128170-mRNA-1;Parent=Msa0128170;Name=Msa0128170-mRNA-1;_AED=0.15;_eAED=0.15;_QI=185|0.89|0.9|1|1|1|20|336|791 |
| chr1_3 | exon | 57795970 | 57796337 | 57795970 | ID=Msa0128170-mRNA-1:exon:18455;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57796422 | 57796591 | 57796422 | ID=Msa0128170-mRNA-1:exon:18456;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57796760 | 57796814 | 57796760 | ID=Msa0128170-mRNA-1:exon:18457;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57796966 | 57797073 | 57796966 | ID=Msa0128170-mRNA-1:exon:18458;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57797312 | 57797410 | 57797312 | ID=Msa0128170-mRNA-1:exon:18459;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57797524 | 57797601 | 57797524 | ID=Msa0128170-mRNA-1:exon:18460;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57799393 | 57799470 | 57799393 | ID=Msa0128170-mRNA-1:exon:18461;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57800140 | 57800262 | 57800140 | ID=Msa0128170-mRNA-1:exon:18462;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57801033 | 57801133 | 57801033 | ID=Msa0128170-mRNA-1:exon:18463;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57801226 | 57801293 | 57801226 | ID=Msa0128170-mRNA-1:exon:18464;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57802198 | 57802271 | 57802198 | ID=Msa0128170-mRNA-1:exon:18465;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57802378 | 57802444 | 57802378 | ID=Msa0128170-mRNA-1:exon:18466;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57802745 | 57802854 | 57802745 | ID=Msa0128170-mRNA-1:exon:18467;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57802998 | 57803267 | 57802998 | ID=Msa0128170-mRNA-1:exon:18468;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57803382 | 57803498 | 57803382 | ID=Msa0128170-mRNA-1:exon:18469;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57803871 | 57803942 | 57803871 | ID=Msa0128170-mRNA-1:exon:18470;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57804029 | 57804079 | 57804029 | ID=Msa0128170-mRNA-1:exon:18471;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57804277 | 57804504 | 57804277 | ID=Msa0128170-mRNA-1:exon:18472;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57804610 | 57804810 | 57804610 | ID=Msa0128170-mRNA-1:exon:18473;Parent=Msa0128170-mRNA-1 |
| chr1_3 | exon | 57804942 | 57805400 | 57804942 | ID=Msa0128170-mRNA-1:exon:18474;Parent=Msa0128170-mRNA-1 |
| chr1_3 | five_prime_UTR | 57795970 | 57796154 | 57795970 | ID=Msa0128170-mRNA-1:five_prime_utr;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57796155 | 57796337 | 57796155 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57796422 | 57796591 | 57796422 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57796760 | 57796814 | 57796760 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57796966 | 57797073 | 57796966 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57797312 | 57797410 | 57797312 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57797524 | 57797601 | 57797524 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57799393 | 57799470 | 57799393 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57800140 | 57800262 | 57800140 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57801033 | 57801133 | 57801033 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57801226 | 57801293 | 57801226 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57802198 | 57802271 | 57802198 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57802378 | 57802444 | 57802378 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57802745 | 57802854 | 57802745 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57802998 | 57803267 | 57802998 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57803382 | 57803498 | 57803382 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57803871 | 57803942 | 57803871 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57804029 | 57804079 | 57804029 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57804277 | 57804504 | 57804277 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57804610 | 57804810 | 57804610 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | CDS | 57804942 | 57805064 | 57804942 | ID=Msa0128170-mRNA-1:cds;Parent=Msa0128170-mRNA-1 |
| chr1_3 | three_prime_UTR | 57805065 | 57805400 | 57805065 | ID=Msa0128170-mRNA-1:three_prime_utr;Parent=Msa0128170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
