AlfalfaGEDB | Msa0703220

M. sativa cultivar zhongmu-4 / Msa0703220

KEGG: K14398|K18584
GO: GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015629 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0097435
PFAM: PF00022.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0703220	XP_013446709.1	100.000	428	0	0	1	428	1	428	0.0	895

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0703220	sp\|Q9SAF1\|ARP3_ARATH	87.617	428	52	1	1	428	1	427	0.0	804

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0703220	A0A072TU70	100.000	428	0	0	1	428	1	428	0.0	895

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001960	Msa0703220	0.809261	2.065049e-50	-8.615850e-47
Msa0002680	Msa0703220	0.815139	1.077092e-51	-8.615850e-47
Msa0002710	Msa0703220	0.811758	5.965331e-51	-8.615850e-47
Msa0015670	Msa0703220	0.820777	5.734029e-53	-8.615850e-47
Msa0016540	Msa0703220	0.811832	5.747266e-51	-8.615850e-47
Msa0028340	Msa0703220	0.825341	4.941879e-54	-8.615850e-47
Msa0035120	Msa0703220	0.809752	1.619675e-50	-8.615850e-47
Msa0035390	Msa0703220	0.829055	6.375217e-55	-8.615850e-47
Msa0039250	Msa0703220	0.821092	4.852512e-53	-8.615850e-47
Msa0043500	Msa0703220	0.840103	1.063544e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0703220	MtrunA17_Chr8g0381261	100.000	428	0	0	1	428	1	428	0.0	895
Msa0703220	MtrunA17_Chr2g0278591	34.550	411	219	8	10	418	10	372	1.33e-74	238
Msa0703220	MtrunA17_Chr7g0223901	34.550	411	219	8	10	418	10	372	1.65e-72	232
Msa0703220	MtrunA17_Chr3g0129641	34.474	409	222	8	10	418	10	372	3.77e-72	231
Msa0703220	MtrunA17_Chr2g0328091	34.550	411	219	8	10	418	10	372	4.87e-72	231
Msa0703220	MtrunA17_Chr6g0448881	34.063	411	221	8	10	418	10	372	5.84e-72	231
Msa0703220	MtrunA17_Chr7g0258721	34.845	419	207	10	10	418	10	372	8.50e-72	230
Msa0703220	MtrunA17_Chr1g0175391	34.550	411	219	8	10	418	10	372	1.26e-71	230
Msa0703220	MtrunA17_Chr7g0224401	32.048	415	242	11	6	416	3	381	4.44e-60	200
Msa0703220	MtrunA17_Chr8g0361001	29.103	457	247	13	9	416	9	437	7.72e-48	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0703220	AT1G13180.1	87.617	428	52	1	1	428	1	427	0.0	804
Msa0703220	AT2G42100.1	34.634	410	222	9	9	418	10	373	1.53e-73	235
Msa0703220	AT3G53750.1	34.390	410	219	8	10	417	10	371	3.18e-72	232
Msa0703220	AT3G53750.2	34.390	410	219	8	10	417	10	371	3.18e-72	232
Msa0703220	AT2G37620.1	34.390	410	219	8	10	417	10	371	3.18e-72	232
Msa0703220	AT2G37620.3	34.390	410	219	8	10	417	10	371	3.18e-72	232
Msa0703220	AT2G37620.2	34.390	410	219	8	10	417	10	371	3.18e-72	232
Msa0703220	AT2G37620.4	34.390	410	219	8	10	417	10	371	3.18e-72	232
Msa0703220	AT3G12110.1	34.307	411	220	8	10	418	10	372	3.81e-72	231
Msa0703220	AT5G09810.1	34.550	411	219	8	10	418	10	372	7.98e-72	231

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Find 133 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAATAATGATCCTC+AGG	0.490852	4_4:+75043041	None:intergenic
AAAATGGTGAAAATCGGAAA+TGG	0.421533	4_4:+75043633	None:intergenic
AAAATGTTGGCTGAGCTGAA+TGG	0.641859	4_4:-75038249	Msa0703220:three_prime_UTR
AAAGATGAATTAGCTGACCA+TGG	0.606344	4_4:-75038530	Msa0703220:three_prime_UTR
AAATATACTTTCCTTCTCAA+TGG	0.428046	4_4:+75043900	None:intergenic
AACCTTAACTATGTCAGAGC+AGG	0.574256	4_4:+75041824	None:intergenic
AAGACTCGTTCGAAGTGGCT+CGG	0.603015	4_4:-75041872	Msa0703220:CDS
AAGAGAAGAGACTGCATCCA+TGG	0.563656	4_4:+75038513	None:intergenic
AAGGCAGAATACGAAGAATA+TGG	0.364575	4_4:-75038603	Msa0703220:CDS
AAGTATATCAAGCAATGGAG+AGG	0.653283	4_4:-75041536	Msa0703220:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGGTGAAAATCGGAAA+TGG	+	chr4_4:75038269-75038288	None:intergenic	30.0%
AATAGAAATGGAGTGAGAAA+AGG	+	chr4_4:75038358-75038377	None:intergenic	30.0%
TCCATTTCTATTTACCCAAT+TGG	-	chr4_4:75038366-75038385	Msa0703220:three_prime_UTR	30.0%
CCATTTCTATTTACCCAATT+GGG	-	chr4_4:75038367-75038386	Msa0703220:three_prime_UTR	30.0%
TGATATTGAGATATCCGAAT+TGG	-	chr4_4:75038496-75038515	Msa0703220:three_prime_UTR	30.0%
GATATTGAGATATCCGAATT+GGG	-	chr4_4:75038497-75038516	Msa0703220:three_prime_UTR	30.0%
AATTCAACACAAACCCAATT+CGG	+	chr4_4:75038513-75038532	None:intergenic	30.0%
ACACTAGGAACAATAAAACA+AGG	+	chr4_4:75038594-75038613	None:intergenic	30.0%
GCTGATCTTGATTTCTTTAT+TGG	-	chr4_4:75038699-75038718	Msa0703220:intron	30.0%
TATCAACATAATACAACAGC+CGG	+	chr4_4:75039117-75039136	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	75037984	75043937	75037984	ID=Msa0703220;Name=Msa0703220
chr4_4	mRNA	75037984	75043937	75037984	ID=Msa0703220-mRNA-1;Parent=Msa0703220;Name=Msa0703220-mRNA-1;_AED=0.05;_eAED=0.05;_QI=318\|1\|1\|1\|1\|1\|9\|573\|428
chr4_4	exon	75037984	75038637	75037984	ID=Msa0703220-mRNA-1:exon:23452;Parent=Msa0703220-mRNA-1
chr4_4	exon	75039710	75039808	75039710	ID=Msa0703220-mRNA-1:exon:23451;Parent=Msa0703220-mRNA-1
chr4_4	exon	75040356	75040481	75040356	ID=Msa0703220-mRNA-1:exon:23450;Parent=Msa0703220-mRNA-1
chr4_4	exon	75040816	75040926	75040816	ID=Msa0703220-mRNA-1:exon:23449;Parent=Msa0703220-mRNA-1
chr4_4	exon	75041469	75041588	75041469	ID=Msa0703220-mRNA-1:exon:23448;Parent=Msa0703220-mRNA-1
chr4_4	exon	75041827	75041919	75041827	ID=Msa0703220-mRNA-1:exon:23447;Parent=Msa0703220-mRNA-1
chr4_4	exon	75042316	75042462	75042316	ID=Msa0703220-mRNA-1:exon:23446;Parent=Msa0703220-mRNA-1
chr4_4	exon	75042905	75043364	75042905	ID=Msa0703220-mRNA-1:exon:23445;Parent=Msa0703220-mRNA-1
chr4_4	exon	75043570	75043937	75043570	ID=Msa0703220-mRNA-1:exon:23444;Parent=Msa0703220-mRNA-1
chr4_4	five_prime_UTR	75043620	75043937	75043620	ID=Msa0703220-mRNA-1:five_prime_utr;Parent=Msa0703220-mRNA-1
chr4_4	CDS	75043570	75043619	75043570	ID=Msa0703220-mRNA-1:cds;Parent=Msa0703220-mRNA-1
chr4_4	CDS	75042905	75043364	75042905	ID=Msa0703220-mRNA-1:cds;Parent=Msa0703220-mRNA-1
chr4_4	CDS	75042316	75042462	75042316	ID=Msa0703220-mRNA-1:cds;Parent=Msa0703220-mRNA-1
chr4_4	CDS	75041827	75041919	75041827	ID=Msa0703220-mRNA-1:cds;Parent=Msa0703220-mRNA-1
chr4_4	CDS	75041469	75041588	75041469	ID=Msa0703220-mRNA-1:cds;Parent=Msa0703220-mRNA-1
chr4_4	CDS	75040816	75040926	75040816	ID=Msa0703220-mRNA-1:cds;Parent=Msa0703220-mRNA-1
chr4_4	CDS	75040356	75040481	75040356	ID=Msa0703220-mRNA-1:cds;Parent=Msa0703220-mRNA-1
chr4_4	CDS	75039710	75039808	75039710	ID=Msa0703220-mRNA-1:cds;Parent=Msa0703220-mRNA-1
chr4_4	CDS	75038557	75038637	75038557	ID=Msa0703220-mRNA-1:cds;Parent=Msa0703220-mRNA-1
chr4_4	three_prime_UTR	75037984	75038556	75037984	ID=Msa0703220-mRNA-1:three_prime_utr;Parent=Msa0703220-mRNA-1

Gene Sequence

>Msa0703220

ATGGACCCAGCTGCTTCTCGTCCTGCTGTTGTCATCGACAATGGCTCCGGGTATACGAAAATGGGCTTTGCTGGTAATGTTGAACCTTGTTTTATTGTTCCTAGTGTGGTTGCGATTAACGAGTCGTTTCTGAATCAATCGAGAAGTTCTTCTAAAGGAAATTGGATTGCTCAGCATAATGCTGGGGTTATGGCTGATCTTGATTTCTTTATTGGAGATGATGCTCTTTCTAAGTCTCGATCTAGTAGTACTTATAATCTCACTTACCCGATTAAGCATGGTCAGGTTGAGAATTGGGATGCCATGGAGCGATTTTGGCAGCAGTGTATATTCAATTATTTGCGGTGTGATCCTGAGGATCATTATTTTCTTTTGACCGAGAGTCCGTTGACAGCGCCTGAGAGTCGTGAGTATACTGGGGAAATTATGTTTGAGACTTTTAATGTGCCTGGACTTTACATTGCCGTGAATTCTGTGCTTGCTCTCGCTGCTGGCTACACTACGTCTAAGTGTGAGATGACAGGAGTCGTAGTTGATATCGGAGATGGGGCTACACATGTTGTACCAGTTGCGGATGGTTATGTTATTGGAAGTAGCATCAAATCAGTTCCTATTGCGGGAAAGGATGTTACTCTTTTCGTCCAGCAGCTAATGCGGGAAAGAGGAGAGAATATACCACCAGAAGACTCGTTCGAAGTGGCTCGGAAAGTGAAGGAAATGCATTGCTACACCTGCTCTGACATAGTTAAGGAATATAATAAGCATGACAAAGAACCAGCCAAGTATATCAAGCAATGGAGAGGCGTTAAACCAAAGACTGGGGCTCCATATTCTTGTGATATTGGCTATGAACGCTTTCTTGGCCCTGAGGTTTTCTTTAATCCCGAGATATATAGCAGCGACTTCACCACTCCTTTGCCTGTTGTAATAGACAAGTGCATTCAGTCTGCGCCAATTGACACAAGGAGATCATTATATAAGAATATAGTGTTGTCAGGAGGATCAACAATGTTCAAGGATTTTCACAGGAGATTACAACGTGATATAAAGAAAATAGTTGATGCTCGTGTCCTTGCAGCTGAAGCGCGCCTTAATGGAGAGATAAAATCACATCCAGTCGAGGTCAATGTACTCAGCCATCCTATCCAAAGATTTGCAGTTTGGTTTGGTGGATCAGTGCTTGCATCAACACCTGAATTTTTTACGGCTTGTCATACAAAGGCAGAATACGAAGAATATGGAGCAAGCATTTGCCGCACAAATCCTGTTTTCAAGGGGATGTATTAA

Protein sequence

>Msa0703220

MDPAASRPAVVIDNGSGYTKMGFAGNVEPCFIVPSVVAINESFLNQSRSSSKGNWIAQHNAGVMADLDFFIGDDALSKSRSSSTYNLTYPIKHGQVENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDIGDGATHVVPVADGYVIGSSIKSVPIAGKDVTLFVQQLMRERGENIPPEDSFEVARKVKEMHCYTCSDIVKEYNKHDKEPAKYIKQWRGVKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPVVIDKCIQSAPIDTRRSLYKNIVLSGGSTMFKDFHRRLQRDIKKIVDARVLAAEARLNGEIKSHPVEVNVLSHPIQRFAVWFGGSVLASTPEFFTACHTKAEYEEYGASICRTNPVFKGMY*