AlfalfaGEDB | Msa0800700

M. sativa cultivar zhongmu-4 / Msa0800700

KEGG: -
GO: GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046
PFAM: PF01465.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0800700	XP_003612320.1	95.222	900	33	3	1	890	1	900	0.0	1687

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0800700	sp\|Q8S2T0\|GRIP_ARATH	63.686	738	257	5	161	889	22	757	0.0	816

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0800700	G7K011	95.222	900	33	3	1	890	1	900	0.0	1687

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0800700	0.832214	1.074121e-55	-8.615850e-47
Msa0002560	Msa0800700	0.839521	1.507552e-57	-8.615850e-47
Msa0002680	Msa0800700	0.837873	4.020728e-57	-8.615850e-47
Msa0002710	Msa0800700	0.836782	7.647853e-57	-8.615850e-47
Msa0003220	Msa0800700	0.872310	3.508755e-67	-8.615850e-47
Msa0003270	Msa0800700	0.803265	3.785333e-49	-8.615850e-47
Msa0003400	Msa0800700	0.811765	5.945206e-51	-8.615850e-47
Msa0005620	Msa0800700	0.820345	7.205225e-53	-8.615850e-47
Msa0006110	Msa0800700	0.851824	6.901482e-61	-8.615850e-47
Msa0007660	Msa0800700	0.801982	6.963560e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0800700	MtrunA17_Chr5g0406721	95.222	900	33	3	1	890	1	900	0.0	1687

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0800700	AT5G66030.2	63.833	741	257	5	161	892	22	760	818
Msa0800700	AT5G66030.1	63.686	738	257	5	161	889	22	757	816
Msa0800700	AT5G66030.3	63.662	710	247	5	161	861	22	729	775
Msa0800700	AT5G66030.4	61.854	658	240	5	161	809	22	677	702

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Find 174 sgRNAs with CRISPR-Local

Find 665 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGGGAAAGCTGGG+AGG	0.732734	5_3:+14201799	Msa0800700:CDS
AAAATGTCAAGCAACAGATA+AGG	0.544513	5_3:+14204157	Msa0800700:CDS
AAAGTCCGAGCTTCGCAACA+TGG	0.577308	5_3:+14205997	Msa0800700:CDS
AAATCGTCTCCACAGCCAAC+AGG	0.508271	5_3:+14205589	Msa0800700:CDS
AAATGAGGCGTTGAAAGCCA+TGG	0.618853	5_3:+14197994	Msa0800700:CDS
AACAAGAAGTCGATGGCATC+TGG	0.438022	5_3:+14196428	Msa0800700:CDS
AACAAGAGTTAGAGCGAACA+AGG	0.568118	5_3:+14197963	Msa0800700:CDS
AACAAGGAAACAAGCAAATG+AGG	0.539583	5_3:+14197979	Msa0800700:CDS
AACGAAGGTCCGACTGATAC+TGG	0.405806	5_3:+14196674	Msa0800700:CDS
AACGAAGTTCTGGCTGATAC+TGG	0.448934	5_3:+14196758	Msa0800700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAAAAACAAGAAGTCGA+TGG	+	chr5_3:14196421-14196440	Msa0800700:CDS	30.0%
TCATATCAGAATCAGACAAA+TGG	-	chr5_3:14196508-14196527	None:intergenic	30.0%
GAGAATCGATTATCTAATAC+AGG	-	chr5_3:14196884-14196903	None:intergenic	30.0%
TACTCAAACTTCTAATCAAG+TGG	+	chr5_3:14197571-14197590	Msa0800700:intron	30.0%
ACTCAAACTTCTAATCAAGT+GGG	+	chr5_3:14197572-14197591	Msa0800700:intron	30.0%
GTGCTTATATAAGAACATTG+TGG	-	chr5_3:14197747-14197766	None:intergenic	30.0%
ACACATTCATTACCTAGAAA+TGG	+	chr5_3:14198105-14198124	Msa0800700:intron	30.0%
CACATTCATTACCTAGAAAT+GGG	+	chr5_3:14198106-14198125	Msa0800700:intron	30.0%
ATCTCTCAAAATGGAAGAAA+TGG	-	chr5_3:14198220-14198239	None:intergenic	30.0%
TGTGTCTTTATCTCTCAAAA+TGG	-	chr5_3:14198229-14198248	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	14196410	14206307	14196410	ID=Msa0800700;Name=Msa0800700
chr5_3	mRNA	14196410	14206307	14196410	ID=Msa0800700-mRNA-1;Parent=Msa0800700;Name=Msa0800700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|1\|0.9\|1\|0.84\|0.9\|20\|0\|893
chr5_3	exon	14196410	14197232	14196410	ID=Msa0800700-mRNA-1:exon:5952;Parent=Msa0800700-mRNA-1
chr5_3	exon	14197355	14197470	14197355	ID=Msa0800700-mRNA-1:exon:5953;Parent=Msa0800700-mRNA-1
chr5_3	exon	14197884	14198053	14197884	ID=Msa0800700-mRNA-1:exon:5954;Parent=Msa0800700-mRNA-1
chr5_3	exon	14199292	14199385	14199292	ID=Msa0800700-mRNA-1:exon:5955;Parent=Msa0800700-mRNA-1
chr5_3	exon	14199782	14199868	14199782	ID=Msa0800700-mRNA-1:exon:5956;Parent=Msa0800700-mRNA-1
chr5_3	exon	14200067	14200147	14200067	ID=Msa0800700-mRNA-1:exon:5957;Parent=Msa0800700-mRNA-1
chr5_3	exon	14200756	14200881	14200756	ID=Msa0800700-mRNA-1:exon:5958;Parent=Msa0800700-mRNA-1
chr5_3	exon	14201797	14201905	14201797	ID=Msa0800700-mRNA-1:exon:5959;Parent=Msa0800700-mRNA-1
chr5_3	exon	14201980	14202059	14201980	ID=Msa0800700-mRNA-1:exon:5960;Parent=Msa0800700-mRNA-1
chr5_3	exon	14203694	14203822	14203694	ID=Msa0800700-mRNA-1:exon:5961;Parent=Msa0800700-mRNA-1
chr5_3	exon	14203905	14204005	14203905	ID=Msa0800700-mRNA-1:exon:5962;Parent=Msa0800700-mRNA-1
chr5_3	exon	14204143	14204276	14204143	ID=Msa0800700-mRNA-1:exon:5963;Parent=Msa0800700-mRNA-1
chr5_3	exon	14204363	14204460	14204363	ID=Msa0800700-mRNA-1:exon:5964;Parent=Msa0800700-mRNA-1
chr5_3	exon	14204566	14204685	14204566	ID=Msa0800700-mRNA-1:exon:5965;Parent=Msa0800700-mRNA-1
chr5_3	exon	14204812	14204839	14204812	ID=Msa0800700-mRNA-1:exon:5966;Parent=Msa0800700-mRNA-1
chr5_3	exon	14205004	14205062	14205004	ID=Msa0800700-mRNA-1:exon:5967;Parent=Msa0800700-mRNA-1
chr5_3	exon	14205400	14205471	14205400	ID=Msa0800700-mRNA-1:exon:5968;Parent=Msa0800700-mRNA-1
chr5_3	exon	14205563	14205610	14205563	ID=Msa0800700-mRNA-1:exon:5969;Parent=Msa0800700-mRNA-1
chr5_3	exon	14205986	14206091	14205986	ID=Msa0800700-mRNA-1:exon:5970;Parent=Msa0800700-mRNA-1
chr5_3	exon	14206207	14206307	14206207	ID=Msa0800700-mRNA-1:exon:5971;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14196410	14197232	14196410	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14197355	14197470	14197355	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14197884	14198053	14197884	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14199292	14199385	14199292	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14199782	14199868	14199782	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14200067	14200147	14200067	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14200756	14200881	14200756	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14201797	14201905	14201797	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14201980	14202059	14201980	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14203694	14203822	14203694	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14203905	14204005	14203905	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14204143	14204276	14204143	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14204363	14204460	14204363	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14204566	14204685	14204566	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14204812	14204839	14204812	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14205004	14205062	14205004	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14205400	14205471	14205400	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14205563	14205610	14205563	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14205986	14206091	14205986	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1
chr5_3	CDS	14206207	14206307	14206207	ID=Msa0800700-mRNA-1:cds;Parent=Msa0800700-mRNA-1

Gene Sequence

>Msa0800700

ATGGGGCGTTCCAAAAAAAACAAGAAGTCGATGGCATCTGGTGAAGGTGATACTGGTGGAAAGATGGAGATACGCGCAGACTCTAGACCTGAAAACCATTTGTCTGATTCTGATATGAACCAGCAAAGGAAGGATGAAAGTGATGTAAATATTGTATTGGAAAATGGCTTATCTGATGGAAATGAAGGTCCGGCTGATACTGGTGGAACTATGGAGATTCGCGCACAAGATTCGTCTAAACCCGAGGAGCATTTGTCAGATGGAAACGAAGGTCCGACTGATACTGGTGGAACGATGGATATTCACGCACAAGATTCATGTAAACCAGAGGAGCATTTGTCAGATGGAAACGAAGTTCTGGCTGATACTGGTGGAACGATGGAGATTCACGCACAAGATTCGTCAAAACCTGAGGAGCATTTGTCTGATTCTGATATGAATCAGCAAAGCAAAGATGGAAGTAATACAAATCCTGTATTAGATAATCGATTCTCTGATGGAAATGAAGGTTTGGCTGATACTCACGATGAGCTTCTGCAAATGGTTGTTGACCTGAAATCTCAGAATGAATTCTTGAAATCCCAGATTGAGGGGTTTAGCAATGTTGAGAGGGAATCCAGTATACAGAAAGAAGTTGGTGGTACGGAAGACGGGGAATCTGACATTGTGAAAGAACTTCGAGAAAGGATAGAATTATTGAATAAAGAATTTCTGATAGAAAAACAAACCAGAATTGCATCCGAAGAAGCTTTGAAGCACCTTCAAATTGCGTACTCAGATGCAGAAGCAAAGGCCAAAGATCTCTCTGAGCAGCTTGTAGAAGCTCAAAATAAGCTGGAACATGAAATAAAAGAACGTGATGAGAAGTACTCTGAACTTGATGCCAAGTTGAATAGGCTTCACAAAAGGGCAAAACAACGCATTCAAGAAGTTCAAAAGGAAAAAGACGATCTTGAGGCACAATTCTCCGAGTTAAACGAATCTGCTGAGCGAGCATCATCCCAACAGTCAGCATTGCAACAAGAGTTAGAGCGAACAAGGAAACAAGCAAATGAGGCGTTGAAAGCCATGGATGGTGATAGGCAACAATTAAGAAGTGCAAACAACAAACTTCGAGATACCATTGAGGATTTACGGCGTTCATTGCAACCTAAAGAGGAGGCTCTTGAGTCATTGCAATTGTCACTTGCAGAAAAGGAACAGATGCTGGAAGATATGAGAGGATTGCTTCGAACTGCCGAGGAAAAAAGGCAAGCTGCACTAGCTGAGCTCTCTGCTAAACATCAAAAGAATTTGGAGAGTTTGGAGGCTCAACTCAATGATGCTGTATCCGATAGGAGAAAGGCAGCTGAGTCCATTTCTTCACTGCAGGTTCTAGTTGCAGAGAAAGAATCTAGAATTGCAGAGATGGAGGCAGCATCAACTGGGGAAGCAGCACGGCTCAGAGCAGCCATGGAAAGTGTGAAGGGGGAGGTTTCTCACTTAAAACAGGAACATGAAAAAGAAAGGGAAAGCTGGGAGGCTGCATCTCTGGCACTTAAAGCGAAACTCCAAATTGCCGAGAGCAACTGCATACGTGCAGAAGTTGAAGTAGCCAAAATAAGAAGTCAGCTTGAATCGGAGGTATCTGCACAAGCCAAGATCCTCAGTATGAGAGATGCTGAACTGTTGGCTGCCAAAGAAGAGATCAGCAGTCTTGAGAGGGAATTTTCTTCATACAAGGCTCGTGCACATGCACTTCTTCAAAAGAAGGACGCAGACTTGGTTGCAGCTAAAGACTCTGAACAACTCAAAGCTCTTGAGGAGGCTCTTAAAGAGGCTGAAAATGAAGTGTTATCGATAACAGAAGAAAGGGATAGAGTTCTTCAAGATCTTCAATCTGCCATGGCTAATAACGAGAAAGAACTTGCAGAAAGAGACACTACCCTTGAAAATGTCAAGCAACAGATAAGGAGCTTAGAAATAAAGCTCGATTCAGTTAGTGCTCAACACCTAAAAGAGAAAGAGGAATGGGGACTGAGCCTTCAAAATGTAGAAGAAACATGGAGAATCAGATGCGAGGCAATGAAAGCCGAAAATGAAGCAGCTGCTGCAGAAGATATGCAGAAGGAATTGGAAGAGCTCAAACAGAGATGTAAAAAATTGAAGGACGAACATGCTTCCTTTCATGATCTTGCTGATAGAATGATTGAGGACAAAGACAATGAAATATCCAGACTTTTAGATGAAAATAAGAATCTTCGCCAGTCTCTTCAATCAAGACCACCCTCCGGTCAAAATGATAATTATAACACAGCCTTGCATAAATTGGATTCAACTAATTTAAGTCCCTCAGATGCCGAACATCAAATTCTGATTTTGGCTAGACAACAAGCCCAAAGGGAGGAAGAGCTAGCACAATCGCAGCGTCATATTTTAGCTCTTCAAGAAGAAATTGAGGAGCTTGAACATGAAAATCGTCTCCACAGCCAACAGGAGGCAATGTTAAAGTCCGAGCTTCGCAACATGGAAAGATCAAACAAAAGGGAAGGTGTAGATATGACGTATTTGAAAAATATTATCTTAAAGCTTCTTGAGACAGGTGAAGTGGAAGTATTGCTACCAGTTATTGGGATGCTGCTTCAGTTTAGTCCAGAGGAGGTAATTTTTTCATCATCTACCTTGCATGTGGGCTCTTGGTAG

Protein sequence

>Msa0800700

MGRSKKNKKSMASGEGDTGGKMEIRADSRPENHLSDSDMNQQRKDESDVNIVLENGLSDGNEGPADTGGTMEIRAQDSSKPEEHLSDGNEGPTDTGGTMDIHAQDSCKPEEHLSDGNEVLADTGGTMEIHAQDSSKPEEHLSDSDMNQQSKDGSNTNPVLDNRFSDGNEGLADTHDELLQMVVDLKSQNEFLKSQIEGFSNVERESSIQKEVGGTEDGESDIVKELRERIELLNKEFLIEKQTRIASEEALKHLQIAYSDAEAKAKDLSEQLVEAQNKLEHEIKERDEKYSELDAKLNRLHKRAKQRIQEVQKEKDDLEAQFSELNESAERASSQQSALQQELERTRKQANEALKAMDGDRQQLRSANNKLRDTIEDLRRSLQPKEEALESLQLSLAEKEQMLEDMRGLLRTAEEKRQAALAELSAKHQKNLESLEAQLNDAVSDRRKAAESISSLQVLVAEKESRIAEMEAASTGEAARLRAAMESVKGEVSHLKQEHEKERESWEAASLALKAKLQIAESNCIRAEVEVAKIRSQLESEVSAQAKILSMRDAELLAAKEEISSLEREFSSYKARAHALLQKKDADLVAAKDSEQLKALEEALKEAENEVLSITEERDRVLQDLQSAMANNEKELAERDTTLENVKQQIRSLEIKLDSVSAQHLKEKEEWGLSLQNVEETWRIRCEAMKAENEAAAAEDMQKELEELKQRCKKLKDEHASFHDLADRMIEDKDNEISRLLDENKNLRQSLQSRPPSGQNDNYNTALHKLDSTNLSPSDAEHQILILARQQAQREEELAQSQRHILALQEEIEELEHENRLHSQQEAMLKSELRNMERSNKREGVDMTYLKNIILKLLETGEVEVLLPVIGMLLQFSPEEVIFSSSTLHVGSW*