Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128800 | sp|Q9SRX9|BAH1_ARATH | 63.194 | 288 | 81 | 6 | 1 | 264 | 1 | 287 | 1.78e-121 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128800 | G7IF76 | 94.424 | 269 | 9 | 2 | 1 | 264 | 1 | 268 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082230 | Msa0128800 | 0.801342 | 9.420630e-49 | -8.615850e-47 |
| Msa0128800 | Msa0128980 | 0.936192 | 2.570642e-97 | -8.615850e-47 |
| Msa0128800 | Msa0174820 | 0.888013 | 8.600421e-73 | -8.615850e-47 |
| Msa0128800 | Msa1370810 | 0.830227 | 3.306263e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128800 | MtrunA17_Chr1g0195671 | 94.424 | 269 | 9 | 2 | 1 | 264 | 1 | 268 | 0.0 | 518 |
| Msa0128800 | MtrunA17_Chr7g0269281 | 81.679 | 262 | 43 | 1 | 1 | 257 | 1 | 262 | 4.33e-150 | 422 |
| Msa0128800 | MtrunA17_Chr7g0268131 | 40.727 | 275 | 143 | 5 | 1 | 257 | 1 | 273 | 1.58e-63 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128800 | AT1G02860.2 | 63.194 | 288 | 81 | 6 | 1 | 264 | 1 | 287 | 1.18e-122 | 354 |
| Msa0128800 | AT1G02860.1 | 63.194 | 288 | 81 | 6 | 1 | 264 | 1 | 287 | 1.81e-122 | 353 |
| Msa0128800 | AT1G02860.3 | 61.277 | 235 | 67 | 5 | 1 | 211 | 1 | 235 | 1.27e-91 | 271 |
| Msa0128800 | AT2G38920.2 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 4.75e-56 | 184 |
| Msa0128800 | AT2G38920.5 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 5.09e-56 | 184 |
| Msa0128800 | AT2G38920.1 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 5.09e-56 | 184 |
| Msa0128800 | AT2G38920.6 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 5.09e-56 | 184 |
| Msa0128800 | AT2G38920.4 | 37.870 | 169 | 99 | 2 | 48 | 211 | 68 | 235 | 1.05e-31 | 118 |
| Msa0128800 | AT2G38920.3 | 35.625 | 160 | 97 | 2 | 48 | 202 | 68 | 226 | 4.75e-26 | 103 |
Find 90 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTTATGGGGTTTGGGTTT+GGG | 0.165768 | 1_3:+58643799 | None:intergenic |
| GGGGTTATGGGGTTTGGGTT+TGG | 0.182375 | 1_3:+58643798 | None:intergenic |
| TGGATGCTGTCTCACATTTA+AGG | 0.203509 | 1_3:-58641145 | Msa0128800:CDS |
| GCCTTTACTTTGATCGATTC+TGG | 0.234863 | 1_3:+58639288 | None:intergenic |
| GGATATGGGGTTATGGGGTT+TGG | 0.245457 | 1_3:+58643792 | None:intergenic |
| CTGGAACGACATCTTGCTTC+TGG | 0.289645 | 1_3:-58641557 | Msa0128800:CDS |
| TGGCATTACATATCAATCTA+AGG | 0.297202 | 1_3:-58641209 | Msa0128800:CDS |
| TGAACAAGGAAGAAAGGATA+TGG | 0.299635 | 1_3:+58643777 | None:intergenic |
| GATATGGGGTTATGGGGTTT+GGG | 0.301671 | 1_3:+58643793 | None:intergenic |
| GAATTTCCTTGTGCATAGTC+TGG | 0.333742 | 1_3:+58641259 | None:intergenic |
| TTCCTTGCTATGTTCATGTT+AGG | 0.340036 | 1_3:+58639166 | None:intergenic |
| ATTGAGAAGGGAAGGGAAAA+AGG | 0.353205 | 1_3:+58641628 | None:intergenic |
| TACTATTGTTGATGGGCTTA+AGG | 0.357492 | 1_3:-58640582 | Msa0128800:CDS |
| CAATGAAATGTCAGAAATAG+TGG | 0.363110 | 1_3:-58641609 | Msa0128800:CDS |
| ATTTGAGATAGATATGATTA+CGG | 0.383384 | 1_3:-58643839 | Msa0128800:five_prime_UTR |
| TGGCCACAAGTCAGAGAAAC+TGG | 0.385626 | 1_3:+58640644 | None:intergenic |
| TTTACAGCTGCAAGGAGTAC+TGG | 0.387587 | 1_3:-58639515 | Msa0128800:intron |
| TCAACATGAGAATGTACTTT+CGG | 0.395088 | 1_3:+58641531 | None:intergenic |
| GAAGAAAGGATATGGGGTTA+TGG | 0.398847 | 1_3:+58643785 | None:intergenic |
| GCATCTGTTACTATTGTTGA+TGG | 0.400772 | 1_3:-58640590 | Msa0128800:CDS |
| TCTGACTTGCTCTATATGTT+TGG | 0.403804 | 1_3:-58641067 | Msa0128800:intron |
| TTTGAGATAGATATGATTAC+GGG | 0.408098 | 1_3:-58643838 | Msa0128800:five_prime_UTR |
| TGTTGAAAGGAAAATCAAAA+AGG | 0.412750 | 1_3:-58641514 | Msa0128800:CDS |
| AAGAAAGGATATGGGGTTAT+GGG | 0.417081 | 1_3:+58643786 | None:intergenic |
| AACGCAGTGTAGAGCGTTCA+TGG | 0.417759 | 1_3:-58639433 | Msa0128800:exon |
| GAAGTTCTGCAAGACCTATC+AGG | 0.420448 | 1_3:-58643659 | Msa0128800:CDS |
| CAAACCTCACTTGGGTTCAA+TGG | 0.439730 | 1_3:-58639393 | Msa0128800:three_prime_UTR |
| GACGTACATGGGCATTGATC+AGG | 0.450499 | 1_3:+58643529 | None:intergenic |
| AGCTTCTTGAATCCAACTAC+AGG | 0.454546 | 1_3:+58643604 | None:intergenic |
| TCAAGCAAGCAAAGGAGCAC+TGG | 0.456757 | 1_3:-58639458 | Msa0128800:CDS |
| CAGAAGAAGCTCCCTGTAGT+TGG | 0.458661 | 1_3:-58643616 | Msa0128800:CDS |
| CATCTGTTACTATTGTTGAT+GGG | 0.462476 | 1_3:-58640589 | Msa0128800:CDS |
| AGGAAATTCTTCAGAGTCCC+TGG | 0.466281 | 1_3:-58641245 | Msa0128800:CDS |
| ACCAGAATCGATCAAAGTAA+AGG | 0.467205 | 1_3:-58639289 | Msa0128800:three_prime_UTR |
| GAACAAGGAAGAAAGGATAT+GGG | 0.472657 | 1_3:+58643778 | None:intergenic |
| TGCCATCAGCTCAATAAGCC+AGG | 0.477293 | 1_3:+58641227 | None:intergenic |
| GATCCAGTTTCTCTGACTTG+TGG | 0.486686 | 1_3:-58640647 | Msa0128800:CDS |
| GACATTTCATTGAGAAGGGA+AGG | 0.489540 | 1_3:+58641620 | None:intergenic |
| TTTCTGACATTTCATTGAGA+AGG | 0.491436 | 1_3:+58641615 | None:intergenic |
| ATTGATCAGGACAAGGTTTG+TGG | 0.494079 | 1_3:+58643542 | None:intergenic |
| AATTTCCTTGTGCATAGTCT+GGG | 0.496401 | 1_3:+58641260 | None:intergenic |
| CTCAAATCCTCCTTGCTCTA+CGG | 0.500049 | 1_3:+58643855 | None:intergenic |
| GCTGGATAATGCATTCTCTC+TGG | 0.501749 | 1_3:+58639193 | None:intergenic |
| ACTTTGGCATCTGTACCTAA+AGG | 0.502566 | 1_3:-58639260 | Msa0128800:three_prime_UTR |
| GTAGAGAAGCAAACCTCACT+TGG | 0.508655 | 1_3:-58639402 | Msa0128800:three_prime_UTR |
| CATACTACTTTAATTCATGA+AGG | 0.511669 | 1_3:-58641488 | Msa0128800:CDS |
| ATAATATGAACAAGGAAGAA+AGG | 0.517064 | 1_3:+58643771 | None:intergenic |
| TCAGGAATACATGCGAGCTC+AGG | 0.526255 | 1_3:-58643641 | Msa0128800:CDS |
| AATACTAAAGAAATACGATA+AGG | 0.526973 | 1_3:-58641417 | Msa0128800:intron |
| TTCTGACATTTCATTGAGAA+GGG | 0.527417 | 1_3:+58641616 | None:intergenic |
| TTACAGCTGCAAGGAGTACT+GGG | 0.534094 | 1_3:-58639514 | Msa0128800:intron |
| GGCATTACATATCAATCTAA+GGG | 0.535814 | 1_3:-58641208 | Msa0128800:CDS |
| AAGGCAACCACATTATTCAA+TGG | 0.537425 | 1_3:-58641165 | Msa0128800:CDS |
| TCCCTGGCTTATTGAGCTGA+TGG | 0.545974 | 1_3:-58641229 | Msa0128800:CDS |
| CTGGGAGGAAAGACTTCAGA+TGG | 0.554408 | 1_3:-58639496 | Msa0128800:CDS |
| TCAGCGTGCACAGAAACTGC+TGG | 0.555825 | 1_3:-58641576 | Msa0128800:CDS |
| CACAACTGTAGCAGAATATG+TGG | 0.556209 | 1_3:+58640624 | None:intergenic |
| AGCTCGCATGTATTCCTGAT+AGG | 0.561249 | 1_3:+58643645 | None:intergenic |
| CAAGCAAGCAAAGGAGCACT+GGG | 0.568388 | 1_3:-58639457 | Msa0128800:CDS |
| TCAATATGTTTACAGCTGCA+AGG | 0.570008 | 1_3:-58639523 | Msa0128800:intron |
| TGCTGTCTCACATTTAAGGA+TGG | 0.573316 | 1_3:-58641141 | Msa0128800:CDS |
| ATCCTAACATGAACATAGCA+AGG | 0.577270 | 1_3:-58639168 | Msa0128800:three_prime_UTR |
| TCAGATGGAAAGAGTAGAGA+GGG | 0.577968 | 1_3:-58639481 | Msa0128800:CDS |
| AAGTACATTCTCATGTTGAA+AGG | 0.578077 | 1_3:-58641527 | Msa0128800:CDS |
| GGGAAACTAAAGACAAGTCA+AGG | 0.583655 | 1_3:-58641188 | Msa0128800:CDS |
| AATGAAATGTCAGAAATAGT+GGG | 0.585835 | 1_3:-58641608 | Msa0128800:CDS |
| ATGTTCATGTTAGGATACGC+TGG | 0.591043 | 1_3:+58639175 | None:intergenic |
| ACGCAGTGTAGAGCGTTCAT+GGG | 0.593633 | 1_3:-58639432 | Msa0128800:exon |
| GCCATCAGCTCAATAAGCCA+GGG | 0.598446 | 1_3:+58641228 | None:intergenic |
| CATGGGCATTGATCAGGACA+AGG | 0.604815 | 1_3:+58643535 | None:intergenic |
| AGAGAGGGTCAAGCAAGCAA+AGG | 0.606390 | 1_3:-58639466 | Msa0128800:CDS |
| TAGCTTACCTCTCGGCACAT+AGG | 0.606824 | 1_3:+58640536 | None:intergenic |
| ACATTTCATTGAGAAGGGAA+GGG | 0.609739 | 1_3:+58641621 | None:intergenic |
| AAGAGCTCACAAGCAAGTGA+TGG | 0.610123 | 1_3:+58641114 | None:intergenic |
| AACTAAAGACAAGTCAAGGA+AGG | 0.614374 | 1_3:-58641184 | Msa0128800:CDS |
| AGAAAGGATATGGGGTTATG+GGG | 0.615262 | 1_3:+58643787 | None:intergenic |
| AACAAGGAAGAAAGGATATG+GGG | 0.622519 | 1_3:+58643779 | None:intergenic |
| TTAACATGTTCCGTAGAGCA+AGG | 0.627155 | 1_3:-58643865 | None:intergenic |
| AGAGAAAGAGAAACAGCGCA+CGG | 0.627878 | 1_3:+58643742 | None:intergenic |
| TACACCATTGAACCCAAGTG+AGG | 0.633884 | 1_3:+58639389 | None:intergenic |
| TAGAGAAGCAAACCTCACTT+GGG | 0.636136 | 1_3:-58639401 | Msa0128800:three_prime_UTR |
| TTCAGATGGAAAGAGTAGAG+AGG | 0.639549 | 1_3:-58639482 | Msa0128800:CDS |
| GCTTCTTGAATCCAACTACA+GGG | 0.643810 | 1_3:+58643605 | None:intergenic |
| GGAAGTGAATAATATGAACA+AGG | 0.680477 | 1_3:+58643763 | None:intergenic |
| ACAAGCCCAGACTATGCACA+AGG | 0.690000 | 1_3:-58641265 | Msa0128800:CDS |
| ACAGCATCCATTGAATAATG+TGG | 0.696194 | 1_3:+58641158 | None:intergenic |
| TTGAGATAGATATGATTACG+GGG | 0.701396 | 1_3:-58643837 | Msa0128800:five_prime_UTR |
| ACATGTTCCGTAGAGCAAGG+AGG | 0.718284 | 1_3:-58643862 | None:intergenic |
| AAAATGTCCTATGTGCCGAG+AGG | 0.727589 | 1_3:-58640543 | Msa0128800:intron |
| CAGCTGCAAGGAGTACTGGG+AGG | 0.743316 | 1_3:-58639511 | Msa0128800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAATCGAAATGAT+GGG | + | chr1_3:58639462-58639481 | None:intergenic | 15.0% |
| !! | AAAATAATTAATCGAAATGA+TGG | + | chr1_3:58639463-58639482 | None:intergenic | 15.0% |
| !! | TCAAACATTTGAAAATAATT+CGG | + | chr1_3:58639528-58639547 | None:intergenic | 15.0% |
| !!! | ATTAACTATTATCAATTTTG+TGG | - | chr1_3:58639837-58639856 | Msa0128800:intron | 15.0% |
| !!! | TTAACTATTATCAATTTTGT+GGG | - | chr1_3:58639838-58639857 | Msa0128800:intron | 15.0% |
| !!! | TTCAATTGATAATTTTAATC+TGG | - | chr1_3:58642263-58642282 | Msa0128800:intron | 15.0% |
| !!! | TAATTCAATTCATTTGTTAA+TGG | + | chr1_3:58643305-58643324 | None:intergenic | 15.0% |
| !! | ATTGAATTAAAATAAAGAGA+TGG | - | chr1_3:58643316-58643335 | Msa0128800:intron | 15.0% |
| !! | GTAAACATATTGAAATTATA+AGG | + | chr1_3:58643429-58643448 | None:intergenic | 15.0% |
| !!! | ATTTGAGATAGATATGATTA+CGG | - | chr1_3:58639120-58639139 | Msa0128800:three_prime_UTR | 20.0% |
| !! | GATGAATAAAAATTGAATGA+AGG | + | chr1_3:58639597-58639616 | None:intergenic | 20.0% |
| !! | AAATTCATGAACTAAATTGA+TGG | + | chr1_3:58639703-58639722 | None:intergenic | 20.0% |
| !! | TAGGAGTTTGATTAATATTA+AGG | + | chr1_3:58639729-58639748 | None:intergenic | 20.0% |
| !!! | TTTAATTTGAGAGTTCATTT+AGG | + | chr1_3:58639748-58639767 | None:intergenic | 20.0% |
| !!! | TAACTATTATCAATTTTGTG+GGG | - | chr1_3:58639839-58639858 | Msa0128800:intron | 20.0% |
| !! | ATAATAAATTGATGAAGTGT+TGG | + | chr1_3:58640153-58640172 | None:intergenic | 20.0% |
| !! | ATATAATTATGGTGTGAAAT+TGG | - | chr1_3:58640464-58640483 | Msa0128800:intron | 20.0% |
| !!! | GATATTTCAATTGTATTGAT+TGG | - | chr1_3:58640919-58640938 | Msa0128800:intron | 20.0% |
| !! | TATAAGAATTAAGAGTTTGT+AGG | - | chr1_3:58641155-58641174 | Msa0128800:CDS | 20.0% |
| !!! | TATAATGATGTCATTTTCTT+TGG | - | chr1_3:58641208-58641227 | Msa0128800:CDS | 20.0% |
| !!! | ATAATGATGTCATTTTCTTT+GGG | - | chr1_3:58641209-58641228 | Msa0128800:CDS | 20.0% |
| !! | AATACTAAAGAAATACGATA+AGG | - | chr1_3:58641542-58641561 | Msa0128800:CDS | 20.0% |
| !!! | TGAGTAAATATAGTTTTTTG+TGG | + | chr1_3:58642068-58642087 | None:intergenic | 20.0% |
| !! | AAAAGAAAAGAAAAAAGTGA+AGG | + | chr1_3:58642243-58642262 | None:intergenic | 20.0% |
| !!! | GTCTTTATTTATAGTGAAAA+AGG | + | chr1_3:58642829-58642848 | None:intergenic | 20.0% |
| !!! | TTTTCACTATAAATAAAGAC+TGG | - | chr1_3:58642829-58642848 | Msa0128800:intron | 20.0% |
| !! | TTTCACTATAAATAAAGACT+GGG | - | chr1_3:58642830-58642849 | Msa0128800:intron | 20.0% |
| !! | TTTCTTAAGAAATGTGAAAA+AGG | + | chr1_3:58642924-58642943 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | + | chr1_3:58643000-58643019 | None:intergenic | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | - | chr1_3:58643125-58643144 | Msa0128800:intron | 20.0% |
| !!! | AATTTTATACTGTTTATGAC+AGG | - | chr1_3:58643204-58643223 | Msa0128800:intron | 20.0% |
| !!! | GAAGAATTGAATATTTTGTT+AGG | - | chr1_3:58643256-58643275 | Msa0128800:intron | 20.0% |
| !!! | TGAATATTTTGTTAGGAAAA+AGG | - | chr1_3:58643263-58643282 | Msa0128800:intron | 20.0% |
| !! | TTTGAGATAGATATGATTAC+GGG | - | chr1_3:58639121-58639140 | Msa0128800:three_prime_UTR | 25.0% |
| ! | ATAATATGAACAAGGAAGAA+AGG | + | chr1_3:58639191-58639210 | None:intergenic | 25.0% |
| !!! | CTCTCATTAGTCATTTTTAT+TGG | - | chr1_3:58639616-58639635 | Msa0128800:intron | 25.0% |
| !! | CTCAAATTACTCCTTTTATT+CGG | - | chr1_3:58639779-58639798 | Msa0128800:intron | 25.0% |
| ! | TAGTTAATTATATGTCCTTC+AGG | + | chr1_3:58639825-58639844 | None:intergenic | 25.0% |
| ! | CTTGTTTAAGAATATGAGAA+TGG | - | chr1_3:58640040-58640059 | Msa0128800:intron | 25.0% |
| ! | CAATTTATTATTCTTTGCTC+AGG | - | chr1_3:58640162-58640181 | Msa0128800:intron | 25.0% |
| !! | TAATTTTGTATGCTTGTGTA+TGG | - | chr1_3:58640370-58640389 | Msa0128800:intron | 25.0% |
| ! | TATGGAAAATTTGCAAAGTA+AGG | - | chr1_3:58640388-58640407 | Msa0128800:intron | 25.0% |
| ! | TGGTGGAAAACATATAATTA+TGG | - | chr1_3:58640453-58640472 | Msa0128800:intron | 25.0% |
| ! | ATAGGTAATGCTTAATGAAA+AGG | - | chr1_3:58640818-58640837 | Msa0128800:intron | 25.0% |
| ! | TAGGTAATGCTTAATGAAAA+GGG | - | chr1_3:58640819-58640838 | Msa0128800:intron | 25.0% |
| !!! | AGAATTGTTTTTGAAGGAAT+TGG | - | chr1_3:58640868-58640887 | Msa0128800:intron | 25.0% |
| !!! | GAATTGTTTTTGAAGGAATT+GGG | - | chr1_3:58640869-58640888 | Msa0128800:intron | 25.0% |
| !!! | TTCAATTGTATTGATTGGAT+TGG | - | chr1_3:58640924-58640943 | Msa0128800:intron | 25.0% |
| ! | AATGAAATGTCAGAAATAGT+GGG | - | chr1_3:58641351-58641370 | Msa0128800:intron | 25.0% |
| ! | TGTTGAAAGGAAAATCAAAA+AGG | - | chr1_3:58641445-58641464 | Msa0128800:CDS | 25.0% |
| ! | CATACTACTTTAATTCATGA+AGG | - | chr1_3:58641471-58641490 | Msa0128800:CDS | 25.0% |
| !! | TTTCTTTTGCATGCTAATTT+TGG | - | chr1_3:58641583-58641602 | Msa0128800:CDS | 25.0% |
| ! | AGATTCATTATTCTAAGCAA+GGG | - | chr1_3:58641657-58641676 | Msa0128800:intron | 25.0% |
| !! | CAGATCAATATCAATTTTGA+TGG | + | chr1_3:58641876-58641895 | None:intergenic | 25.0% |
| ! | TTGTATTGAAATTGTAAACC+AGG | - | chr1_3:58642027-58642046 | Msa0128800:intron | 25.0% |
| ! | ATAGTTTCAAATATGTGACA+TGG | - | chr1_3:58642104-58642123 | Msa0128800:intron | 25.0% |
| ! | GGAAAATATTGAACAACATA+AGG | + | chr1_3:58642153-58642172 | None:intergenic | 25.0% |
| !! | TCAATATTTTCCTAACCAAT+TGG | - | chr1_3:58642161-58642180 | Msa0128800:intron | 25.0% |
| !! | AGAAAAGTATACTGATAATG+TGG | + | chr1_3:58642194-58642213 | None:intergenic | 25.0% |
| ! | AGAAGTTATTGATGTAAGAA+TGG | + | chr1_3:58642482-58642501 | None:intergenic | 25.0% |
| ! | TTTCAATGGTCAAAATTAAC+AGG | + | chr1_3:58642659-58642678 | None:intergenic | 25.0% |
| ! | AAGAAGATCTTAAGTTTCAA+TGG | + | chr1_3:58642673-58642692 | None:intergenic | 25.0% |
| !!! | CAGAACTGTTTACTTATTTT+AGG | - | chr1_3:58642767-58642786 | Msa0128800:intron | 25.0% |
| ! | TTCACTATAAATAAAGACTG+GGG | - | chr1_3:58642831-58642850 | Msa0128800:intron | 25.0% |
| ! | ACAAGATAGTAGTGTTAATT+AGG | - | chr1_3:58643041-58643060 | Msa0128800:intron | 25.0% |
| ! | CAAGATAGTAGTGTTAATTA+GGG | - | chr1_3:58643042-58643061 | Msa0128800:intron | 25.0% |
| ! | AAGATAGTAGTGTTAATTAG+GGG | - | chr1_3:58643043-58643062 | Msa0128800:intron | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+AGG | - | chr1_3:58643090-58643109 | Msa0128800:intron | 25.0% |
| ! | GCATCTAGTAATTTGAAAAA+GGG | - | chr1_3:58643091-58643110 | Msa0128800:intron | 25.0% |
| ! | TTGAAAAAGGGTTTACATTT+AGG | - | chr1_3:58643103-58643122 | Msa0128800:intron | 25.0% |
| ! | TGAAAAAGGGTTTACATTTA+GGG | - | chr1_3:58643104-58643123 | Msa0128800:intron | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | - | chr1_3:58643124-58643143 | Msa0128800:intron | 25.0% |
| ! | AATATAACACCACAATTAAG+AGG | + | chr1_3:58643373-58643392 | None:intergenic | 25.0% |
| ! | AATTATAAGGTTAAGACACT+TGG | + | chr1_3:58643416-58643435 | None:intergenic | 25.0% |
| !! | AAAGTAAAGGCTTTTTACTT+TGG | - | chr1_3:58643683-58643702 | Msa0128800:exon | 25.0% |
| ! | ATACACTAGCCAAAAATAAA+TGG | + | chr1_3:58643725-58643744 | None:intergenic | 25.0% |
| TTGAGATAGATATGATTACG+GGG | - | chr1_3:58639122-58639141 | Msa0128800:three_prime_UTR | 30.0% | |
| GGAAGTGAATAATATGAACA+AGG | + | chr1_3:58639199-58639218 | None:intergenic | 30.0% | |
| TAAAAACATCAGAGAGAAAG+AGG | + | chr1_3:58639271-58639290 | None:intergenic | 30.0% | |
| !! | ATTAATCGAAATGATGGGTT+TGG | + | chr1_3:58639457-58639476 | None:intergenic | 30.0% |
| ATATATTCACGATCCAATTC+AGG | - | chr1_3:58639569-58639588 | Msa0128800:intron | 30.0% | |
| AAGACTAATGTCCGAATAAA+AGG | + | chr1_3:58639793-58639812 | None:intergenic | 30.0% | |
| AGTCTTAAAATTTGTCCTGA+AGG | - | chr1_3:58639807-58639826 | Msa0128800:intron | 30.0% | |
| ! | TATTATCAATTTTGTGGGGA+GGG | - | chr1_3:58639843-58639862 | Msa0128800:intron | 30.0% |
| ACATATTAAACTGCTCACTA+AGG | + | chr1_3:58639875-58639894 | None:intergenic | 30.0% | |
| TATGTTATTCACTAGTACTG+TGG | - | chr1_3:58639890-58639909 | Msa0128800:intron | 30.0% | |
| TTTATTATTCTTTGCTCAGG+AGG | - | chr1_3:58640165-58640184 | Msa0128800:intron | 30.0% | |
| !!! | TGTCGATGGTTGTTTTAAAA+TGG | - | chr1_3:58640247-58640266 | Msa0128800:intron | 30.0% |
| !!! | ATGGTTGTTTTAAAATGGCT+GGG | - | chr1_3:58640252-58640271 | Msa0128800:intron | 30.0% |
| AAAATTTGCAAAGTAAGGCA+TGG | - | chr1_3:58640393-58640412 | Msa0128800:intron | 30.0% | |
| TTGGTTAGATGGTAAGATTA+AGG | - | chr1_3:58640483-58640502 | Msa0128800:intron | 30.0% | |
| TGGTTAGATGGTAAGATTAA+GGG | - | chr1_3:58640484-58640503 | Msa0128800:intron | 30.0% | |
| ATGGTAAGATTAAGGGATTT+GGG | - | chr1_3:58640491-58640510 | Msa0128800:intron | 30.0% | |
| !! | ATTGGTTTGATAAACATGCA+TGG | - | chr1_3:58640771-58640790 | Msa0128800:intron | 30.0% |
| ATCAGAACTTCAGAAGAAAA+TGG | - | chr1_3:58640794-58640813 | Msa0128800:intron | 30.0% | |
| ACTTCAGAAGAAAATGGTAT+AGG | - | chr1_3:58640800-58640819 | Msa0128800:intron | 30.0% | |
| !!! | AGCAGAAGAATTGTTTTTGA+AGG | - | chr1_3:58640862-58640881 | Msa0128800:intron | 30.0% |
| !! | ACTGTTAAGTGCTATTTAGA+CGG | - | chr1_3:58640896-58640915 | Msa0128800:intron | 30.0% |
| !! | ATTGTAGAATTTGTTGCACA+AGG | - | chr1_3:58640980-58640999 | Msa0128800:intron | 30.0% |
| ACTTCACTAATTAACTCTGA+TGG | + | chr1_3:58641020-58641039 | None:intergenic | 30.0% | |
| TTCTTATAATAGACTACACG+CGG | + | chr1_3:58641143-58641162 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTGGGTACAGATT+GGG | - | chr1_3:58641220-58641239 | Msa0128800:CDS | 30.0% |
| ! | ATTACACTATGTTAGCTTAG+AGG | + | chr1_3:58641287-58641306 | None:intergenic | 30.0% |
| !! | TTATTTTATTCAGTGTGCGA+TGG | - | chr1_3:58641306-58641325 | Msa0128800:intron | 30.0% |
| ! | TATTTTATTCAGTGTGCGAT+GGG | - | chr1_3:58641307-58641326 | Msa0128800:intron | 30.0% |
| TTCTGACATTTCATTGAGAA+GGG | + | chr1_3:58641346-58641365 | None:intergenic | 30.0% | |
| TTTCTGACATTTCATTGAGA+AGG | + | chr1_3:58641347-58641366 | None:intergenic | 30.0% | |
| CAATGAAATGTCAGAAATAG+TGG | - | chr1_3:58641350-58641369 | Msa0128800:intron | 30.0% | |
| TCAACATGAGAATGTACTTT+CGG | + | chr1_3:58641431-58641450 | None:intergenic | 30.0% | |
| AAGTACATTCTCATGTTGAA+AGG | - | chr1_3:58641432-58641451 | Msa0128800:CDS | 30.0% | |
| CAGATTCATTATTCTAAGCA+AGG | - | chr1_3:58641656-58641675 | Msa0128800:intron | 30.0% | |
| TGGCATTACATATCAATCTA+AGG | - | chr1_3:58641750-58641769 | Msa0128800:intron | 30.0% | |
| GGCATTACATATCAATCTAA+GGG | - | chr1_3:58641751-58641770 | Msa0128800:intron | 30.0% | |
| ! | TTTGTACATGACTCTCATTT+TGG | - | chr1_3:58641954-58641973 | Msa0128800:intron | 30.0% |
| ! | TTTTGTGGAACCATAAAACT+AGG | + | chr1_3:58642053-58642072 | None:intergenic | 30.0% |
| CATCTGTTACTATTGTTGAT+GGG | - | chr1_3:58642370-58642389 | Msa0128800:intron | 30.0% | |
| AAATTAACAGGCCTAAACAA+AGG | + | chr1_3:58642647-58642666 | None:intergenic | 30.0% | |
| GAAGCTAAACAATTACAGAA+GGG | + | chr1_3:58642711-58642730 | None:intergenic | 30.0% | |
| AGAAGCTAAACAATTACAGA+AGG | + | chr1_3:58642712-58642731 | None:intergenic | 30.0% | |
| ! | TTCTGTAATTGTTTAGCTTC+TGG | - | chr1_3:58642711-58642730 | Msa0128800:intron | 30.0% |
| GCTGAATAAGTATAATTGAG+CGG | - | chr1_3:58642799-58642818 | Msa0128800:intron | 30.0% | |
| AGAAATGTGAAAAAGGCAAT+GGG | + | chr1_3:58642917-58642936 | None:intergenic | 30.0% | |
| AAGAAATGTGAAAAAGGCAA+TGG | + | chr1_3:58642918-58642937 | None:intergenic | 30.0% | |
| ! | TGTTAATTAGGGGTATGTTT+AGG | - | chr1_3:58643053-58643072 | Msa0128800:intron | 30.0% |
| ! | CATTTTCACAAGATTGTTGA+AGG | - | chr1_3:58643638-58643657 | Msa0128800:CDS | 30.0% |
| !! | ACCTAAAGGCCATTTATTTT+TGG | - | chr1_3:58643713-58643732 | Msa0128800:five_prime_UTR | 30.0% |
| AAGAAAGGATATGGGGTTAT+GGG | + | chr1_3:58639176-58639195 | None:intergenic | 35.0% | |
| AACAAGGAAGAAAGGATATG+GGG | + | chr1_3:58639183-58639202 | None:intergenic | 35.0% | |
| GAACAAGGAAGAAAGGATAT+GGG | + | chr1_3:58639184-58639203 | None:intergenic | 35.0% | |
| TGAACAAGGAAGAAAGGATA+TGG | + | chr1_3:58639185-58639204 | None:intergenic | 35.0% | |
| TTGAATGAAGGAACCTGAAT+TGG | + | chr1_3:58639585-58639604 | None:intergenic | 35.0% | |
| TTTGACACGTGATTCATGAT+TGG | - | chr1_3:58639645-58639664 | Msa0128800:intron | 35.0% | |
| ! | CTATTATCAATTTTGTGGGG+AGG | - | chr1_3:58639842-58639861 | Msa0128800:intron | 35.0% |
| ! | ATTATCAATTTTGTGGGGAG+GGG | - | chr1_3:58639844-58639863 | Msa0128800:intron | 35.0% |
| ! | GTTGGTAAATGATAACCTCT+TGG | + | chr1_3:58640135-58640154 | None:intergenic | 35.0% |
| TTGAGTACTCGAAATTGTCA+AGG | - | chr1_3:58640223-58640242 | Msa0128800:intron | 35.0% | |
| TGAGTACTCGAAATTGTCAA+GGG | - | chr1_3:58640224-58640243 | Msa0128800:intron | 35.0% | |
| !!! | GATGGTTGTTTTAAAATGGC+TGG | - | chr1_3:58640251-58640270 | Msa0128800:intron | 35.0% |
| AAATGATCGCTGCTGTTATT+TGG | + | chr1_3:58640294-58640313 | None:intergenic | 35.0% | |
| !! | GTGGAGTGTTTTGTAATAAG+AGG | - | chr1_3:58640415-58640434 | Msa0128800:intron | 35.0% |
| ! | GAGTGTTTTGTAATAAGAGG+AGG | - | chr1_3:58640418-58640437 | Msa0128800:intron | 35.0% |
| ATGGTGTGAAATTGGTTAGA+TGG | - | chr1_3:58640472-58640491 | Msa0128800:intron | 35.0% | |
| GATGGTAAGATTAAGGGATT+TGG | - | chr1_3:58640490-58640509 | Msa0128800:intron | 35.0% | |
| CAGTGAATTTGAAAACCACT+GGG | + | chr1_3:58640527-58640546 | None:intergenic | 35.0% | |
| AGAAAATAGTAGCAGGGATT+TGG | - | chr1_3:58640562-58640581 | Msa0128800:CDS | 35.0% | |
| TTTCTGCATAACAGTCATAC+TGG | - | chr1_3:58640602-58640621 | Msa0128800:CDS | 35.0% | |
| !! | TACTGGTATGCTTGATTTGT+AGG | - | chr1_3:58640619-58640638 | Msa0128800:CDS | 35.0% |
| !! | ACTGGTATGCTTGATTTGTA+GGG | - | chr1_3:58640620-58640639 | Msa0128800:CDS | 35.0% |
| GTTATGAAGCTATACCGTTA+AGG | - | chr1_3:58640649-58640668 | Msa0128800:CDS | 35.0% | |
| ! | TGAGTGTTACTCGTCTTAAT+TGG | - | chr1_3:58640753-58640772 | Msa0128800:intron | 35.0% |
| !! | CTGTTAAGTGCTATTTAGAC+GGG | - | chr1_3:58640897-58640916 | Msa0128800:intron | 35.0% |
| TCACTAATTAACTCTGATGG+AGG | + | chr1_3:58641017-58641036 | None:intergenic | 35.0% | |
| ATTTAGTCACTGAAGCTGAA+GGG | + | chr1_3:58641113-58641132 | None:intergenic | 35.0% | |
| AATTTAGTCACTGAAGCTGA+AGG | + | chr1_3:58641114-58641133 | None:intergenic | 35.0% | |
| ! | CATTTTCTTTGGGTACAGAT+TGG | - | chr1_3:58641219-58641238 | Msa0128800:CDS | 35.0% |
| ! | TTTTCTTTGGGTACAGATTG+GGG | - | chr1_3:58641221-58641240 | Msa0128800:CDS | 35.0% |
| ! | TATGTTAGCTTAGAGGTAGT+GGG | + | chr1_3:58641280-58641299 | None:intergenic | 35.0% |
| ACATTTCATTGAGAAGGGAA+GGG | + | chr1_3:58641341-58641360 | None:intergenic | 35.0% | |
| AATTTCCTTGTGCATAGTCT+GGG | + | chr1_3:58641702-58641721 | None:intergenic | 35.0% | |
| AACTAAAGACAAGTCAAGGA+AGG | - | chr1_3:58641775-58641794 | Msa0128800:intron | 35.0% | |
| AAGGCAACCACATTATTCAA+TGG | - | chr1_3:58641794-58641813 | Msa0128800:intron | 35.0% | |
| ACAGCATCCATTGAATAATG+TGG | + | chr1_3:58641804-58641823 | None:intergenic | 35.0% | |
| !! | TCTGACTTGCTCTATATGTT+TGG | - | chr1_3:58641892-58641911 | Msa0128800:intron | 35.0% |
| TTGAACAACATAAGGAGATC+TGG | + | chr1_3:58642145-58642164 | None:intergenic | 35.0% | |
| !! | GTGAAAGTGTCTCTCTTATA+AGG | - | chr1_3:58642216-58642235 | Msa0128800:intron | 35.0% |
| GCATCTGTTACTATTGTTGA+TGG | - | chr1_3:58642369-58642388 | Msa0128800:intron | 35.0% | |
| !! | TACTATTGTTGATGGGCTTA+AGG | - | chr1_3:58642377-58642396 | Msa0128800:intron | 35.0% |
| TAATGAGATCCTACTGCATA+TGG | + | chr1_3:58642449-58642468 | None:intergenic | 35.0% | |
| TCAAATGGGTGCTTAGATAT+AGG | - | chr1_3:58643139-58643158 | Msa0128800:intron | 35.0% | |
| CAAATGGGTGCTTAGATATA+GGG | - | chr1_3:58643140-58643159 | Msa0128800:intron | 35.0% | |
| TTATACTGTTTATGACAGGC+AGG | - | chr1_3:58643208-58643227 | Msa0128800:intron | 35.0% | |
| GATCGAAAACAGACTCTAAA+TGG | + | chr1_3:58643351-58643370 | None:intergenic | 35.0% | |
| ! | GTTTTCGATCCTCTTAATTG+TGG | - | chr1_3:58643361-58643380 | Msa0128800:intron | 35.0% |
| TCAATATGTTTACAGCTGCA+AGG | - | chr1_3:58643436-58643455 | Msa0128800:intron | 35.0% | |
| ACCAGAATCGATCAAAGTAA+AGG | - | chr1_3:58643670-58643689 | Msa0128800:exon | 35.0% | |
| GCCAAAAATAAATGGCCTTT+AGG | + | chr1_3:58643717-58643736 | None:intergenic | 35.0% | |
| ATCCTAACATGAACATAGCA+AGG | - | chr1_3:58643791-58643810 | Msa0128800:five_prime_UTR | 35.0% | |
| ! | TTCCTTGCTATGTTCATGTT+AGG | + | chr1_3:58643796-58643815 | None:intergenic | 35.0% |
| ! | ATCATACATGTTTTGTCCTG+TGG | + | chr1_3:58643822-58643841 | None:intergenic | 35.0% |
| AGAAAGGATATGGGGTTATG+GGG | + | chr1_3:58639175-58639194 | None:intergenic | 40.0% | |
| GAAGAAAGGATATGGGGTTA+TGG | + | chr1_3:58639177-58639196 | None:intergenic | 40.0% | |
| GCTTCTTGAATCCAACTACA+GGG | + | chr1_3:58639357-58639376 | None:intergenic | 40.0% | |
| AGCTTCTTGAATCCAACTAC+AGG | + | chr1_3:58639358-58639377 | None:intergenic | 40.0% | |
| ATTGATCAGGACAAGGTTTG+TGG | + | chr1_3:58639420-58639439 | None:intergenic | 40.0% | |
| ! | TTATCAATTTTGTGGGGAGG+GGG | - | chr1_3:58639845-58639864 | Msa0128800:intron | 40.0% |
| ATTCACTAGTACTGTGGCAA+AGG | - | chr1_3:58639896-58639915 | Msa0128800:intron | 40.0% | |
| ATGTGTACAAGATGCATGGA+GGG | - | chr1_3:58639934-58639953 | Msa0128800:intron | 40.0% | |
| TTCTCAGGCACATACAAGTA+AGG | + | chr1_3:58639981-58640000 | None:intergenic | 40.0% | |
| TACTTGTATGTGCCTGAGAA+TGG | - | chr1_3:58639981-58640000 | Msa0128800:intron | 40.0% | |
| AGAATATGAGAATGGACGTG+TGG | - | chr1_3:58640048-58640067 | Msa0128800:intron | 40.0% | |
| AGGCAGTGTATAAGGAGATA+TGG | - | chr1_3:58640108-58640127 | Msa0128800:intron | 40.0% | |
| GGCAGTGTATAAGGAGATAT+GGG | - | chr1_3:58640109-58640128 | Msa0128800:intron | 40.0% | |
| GATCATTTCACTCTGATTGC+AGG | - | chr1_3:58640306-58640325 | Msa0128800:intron | 40.0% | |
| !! | TGATTGCAGGACTGTTTTGA+GGG | - | chr1_3:58640319-58640338 | Msa0128800:intron | 40.0% |
| ATTTGCAAAGTAAGGCATGG+TGG | - | chr1_3:58640396-58640415 | Msa0128800:intron | 40.0% | |
| ! | AGAGGAGGATGTAATTTTCG+TGG | - | chr1_3:58640433-58640452 | Msa0128800:intron | 40.0% |
| GCAGTGAATTTGAAAACCAC+TGG | + | chr1_3:58640528-58640547 | None:intergenic | 40.0% | |
| TTCAAATTCACTGCTATGCC+TGG | - | chr1_3:58640534-58640553 | Msa0128800:intron | 40.0% | |
| TCAAATTCACTGCTATGCCT+GGG | - | chr1_3:58640535-58640554 | Msa0128800:intron | 40.0% | |
| GGCTTGAGAAAATAGTAGCA+GGG | - | chr1_3:58640556-58640575 | Msa0128800:CDS | 40.0% | |
| AAATAGTAGCAGGGATTTGG+TGG | - | chr1_3:58640565-58640584 | Msa0128800:CDS | 40.0% | |
| !! | CTGGTATGCTTGATTTGTAG+GGG | - | chr1_3:58640621-58640640 | Msa0128800:CDS | 40.0% |
| TTTCTTTGGGTACAGATTGG+GGG | - | chr1_3:58641222-58641241 | Msa0128800:CDS | 40.0% | |
| ! | CTATGTTAGCTTAGAGGTAG+TGG | + | chr1_3:58641281-58641300 | None:intergenic | 40.0% |
| ATTGAGAAGGGAAGGGAAAA+AGG | + | chr1_3:58641334-58641353 | None:intergenic | 40.0% | |
| GACATTTCATTGAGAAGGGA+AGG | + | chr1_3:58641342-58641361 | None:intergenic | 40.0% | |
| GAATTTCCTTGTGCATAGTC+TGG | + | chr1_3:58641703-58641722 | None:intergenic | 40.0% | |
| GGGAAACTAAAGACAAGTCA+AGG | - | chr1_3:58641771-58641790 | Msa0128800:intron | 40.0% | |
| TGGATGCTGTCTCACATTTA+AGG | - | chr1_3:58641814-58641833 | Msa0128800:intron | 40.0% | |
| TGCTGTCTCACATTTAAGGA+TGG | - | chr1_3:58641818-58641837 | Msa0128800:intron | 40.0% | |
| !!! | GTAAACCAGGCCTAGTTTTA+TGG | - | chr1_3:58642040-58642059 | Msa0128800:intron | 40.0% |
| CACAACTGTAGCAGAATATG+TGG | + | chr1_3:58642338-58642357 | None:intergenic | 40.0% | |
| TTGAAAGACCAGTTGAGCTT+AGG | + | chr1_3:58642592-58642611 | None:intergenic | 40.0% | |
| ! | AATTTGCCCGACCTTTGTTT+AGG | - | chr1_3:58642633-58642652 | Msa0128800:intron | 40.0% |
| TAACAGGCCTAAACAAAGGT+CGG | + | chr1_3:58642643-58642662 | None:intergenic | 40.0% | |
| AGACTGGGGATGTTAAGAAT+TGG | - | chr1_3:58642845-58642864 | Msa0128800:intron | 40.0% | |
| AATGTGAAAAAGGCAATGGG+TGG | + | chr1_3:58642914-58642933 | None:intergenic | 40.0% | |
| !! | TTATGAAGGTGCTGTACACT+TGG | - | chr1_3:58643234-58643253 | Msa0128800:intron | 40.0% |
| TTCAGATGGAAAGAGTAGAG+AGG | - | chr1_3:58643477-58643496 | Msa0128800:intron | 40.0% | |
| TCAGATGGAAAGAGTAGAGA+GGG | - | chr1_3:58643478-58643497 | Msa0128800:intron | 40.0% | |
| TAGAGAAGCAAACCTCACTT+GGG | - | chr1_3:58643558-58643577 | Msa0128800:CDS | 40.0% | |
| ! | GCCTTTACTTTGATCGATTC+TGG | + | chr1_3:58643674-58643693 | None:intergenic | 40.0% |
| ACTTTGGCATCTGTACCTAA+AGG | - | chr1_3:58643699-58643718 | Msa0128800:five_prime_UTR | 40.0% | |
| ATGTTCATGTTAGGATACGC+TGG | + | chr1_3:58643787-58643806 | None:intergenic | 40.0% | |
| ACATAGCAAGGAAAAACCAC+AGG | - | chr1_3:58643803-58643822 | Msa0128800:five_prime_UTR | 40.0% | |
| GATATGGGGTTATGGGGTTT+GGG | + | chr1_3:58639169-58639188 | None:intergenic | 45.0% | |
| AGAGAAAGAGAAACAGCGCA+CGG | + | chr1_3:58639220-58639239 | None:intergenic | 45.0% | |
| GAAGTTCTGCAAGACCTATC+AGG | - | chr1_3:58639300-58639319 | Msa0128800:three_prime_UTR | 45.0% | |
| AGCTCGCATGTATTCCTGAT+AGG | + | chr1_3:58639317-58639336 | None:intergenic | 45.0% | |
| !! | ATGGGTTTGGTGACGTACAT+GGG | + | chr1_3:58639444-58639463 | None:intergenic | 45.0% |
| GATGTGTACAAGATGCATGG+AGG | - | chr1_3:58639933-58639952 | Msa0128800:intron | 45.0% | |
| GAGGAGGGAGTCATTTCATT+TGG | - | chr1_3:58640009-58640028 | Msa0128800:intron | 45.0% | |
| ATATGAGAATGGACGTGTGG+AGG | - | chr1_3:58640051-58640070 | Msa0128800:intron | 45.0% | |
| AGATGGGATCTACTCTGTGA+AGG | - | chr1_3:58640088-58640107 | Msa0128800:intron | 45.0% | |
| CTCTGTGAAGGCAGTGTATA+AGG | - | chr1_3:58640100-58640119 | Msa0128800:intron | 45.0% | |
| ATAAGGAGATATGGGCCAAG+AGG | - | chr1_3:58640117-58640136 | Msa0128800:intron | 45.0% | |
| !! | GAAATTGTCAAGGGTGTCGA+TGG | - | chr1_3:58640233-58640252 | Msa0128800:intron | 45.0% |
| ! | GCTGCTGTTATTTGGTAGCA+CGG | + | chr1_3:58640286-58640305 | None:intergenic | 45.0% |
| ! | CTGATTGCAGGACTGTTTTG+AGG | - | chr1_3:58640318-58640337 | Msa0128800:intron | 45.0% |
| ! | GGAGGATGTAATTTTCGTGG+TGG | - | chr1_3:58640436-58640455 | Msa0128800:intron | 45.0% |
| ! | GCTACTATTTTCTCAAGCCC+AGG | + | chr1_3:58640555-58640574 | None:intergenic | 45.0% |
| GGGCTTGAGAAAATAGTAGC+AGG | - | chr1_3:58640555-58640574 | Msa0128800:CDS | 45.0% | |
| TGAAGCTATACCGTTAAGGC+TGG | - | chr1_3:58640653-58640672 | Msa0128800:CDS | 45.0% | |
| GAAGCTATACCGTTAAGGCT+GGG | - | chr1_3:58640654-58640673 | Msa0128800:CDS | 45.0% | |
| TTCGACCTGTCTACGAAAAC+TGG | + | chr1_3:58640693-58640712 | None:intergenic | 45.0% | |
| AGGAAATTCTTCAGAGTCCC+TGG | - | chr1_3:58641714-58641733 | Msa0128800:intron | 45.0% | |
| AAGAGCTCACAAGCAAGTGA+TGG | + | chr1_3:58641848-58641867 | None:intergenic | 45.0% | |
| TGGAACCATAAAACTAGGCC+TGG | + | chr1_3:58642048-58642067 | None:intergenic | 45.0% | |
| TAATGTGGAACTGCGCCAAT+TGG | + | chr1_3:58642179-58642198 | None:intergenic | 45.0% | |
| !! | TAATCTGGCTCTTCCATGAC+AGG | - | chr1_3:58642278-58642297 | Msa0128800:intron | 45.0% |
| TCAAACACTGTGTCCTGTCA+TGG | + | chr1_3:58642294-58642313 | None:intergenic | 45.0% | |
| ! | GATCCAGTTTCTCTGACTTG+TGG | - | chr1_3:58642312-58642331 | Msa0128800:intron | 45.0% |
| AAAATGTCCTATGTGCCGAG+AGG | - | chr1_3:58642416-58642435 | Msa0128800:intron | 45.0% | |
| GCATATGGTAGCTTACCTCT+CGG | + | chr1_3:58642434-58642453 | None:intergenic | 45.0% | |
| GGTAAGCTACCATATGCAGT+AGG | - | chr1_3:58642437-58642456 | Msa0128800:intron | 45.0% | |
| GCAGTAGGATCTCATTAGAG+TGG | - | chr1_3:58642452-58642471 | Msa0128800:intron | 45.0% | |
| AACAGGCCTAAACAAAGGTC+GGG | + | chr1_3:58642642-58642661 | None:intergenic | 45.0% | |
| GCAATGGGTGGCTACATTAA+GGG | + | chr1_3:58642902-58642921 | None:intergenic | 45.0% | |
| TGGGTGCTTAGATATAGGGA+CGG | - | chr1_3:58643144-58643163 | Msa0128800:intron | 45.0% | |
| TGCTTAGATATAGGGACGGA+GGG | - | chr1_3:58643148-58643167 | Msa0128800:intron | 45.0% | |
| TGACAGGCAGGAGTTTATGA+AGG | - | chr1_3:58643220-58643239 | Msa0128800:intron | 45.0% | |
| ! | TTTACAGCTGCAAGGAGTAC+TGG | - | chr1_3:58643444-58643463 | Msa0128800:intron | 45.0% |
| !! | TTACAGCTGCAAGGAGTACT+GGG | - | chr1_3:58643445-58643464 | Msa0128800:intron | 45.0% |
| GTAGAGAAGCAAACCTCACT+TGG | - | chr1_3:58643557-58643576 | Msa0128800:CDS | 45.0% | |
| CAAACCTCACTTGGGTTCAA+TGG | - | chr1_3:58643566-58643585 | Msa0128800:CDS | 45.0% | |
| TACACCATTGAACCCAAGTG+AGG | + | chr1_3:58643573-58643592 | None:intergenic | 45.0% | |
| GCTGGATAATGCATTCTCTC+TGG | + | chr1_3:58643769-58643788 | None:intergenic | 45.0% | |
| !!! | ATTATTTTGTTTTAATTTTA+CGG | - | chr1_3:58639475-58639494 | Msa0128800:CDS | 5.0% |
| ! | GGGTTATGGGGTTTGGGTTT+GGG | + | chr1_3:58639163-58639182 | None:intergenic | 50.0% |
| GGATATGGGGTTATGGGGTT+TGG | + | chr1_3:58639170-58639189 | None:intergenic | 50.0% | |
| TCAGGAATACATGCGAGCTC+AGG | - | chr1_3:58639318-58639337 | Msa0128800:three_prime_UTR | 50.0% | |
| CAGAAGAAGCTCCCTGTAGT+TGG | - | chr1_3:58639343-58639362 | Msa0128800:three_prime_UTR | 50.0% | |
| !! | CATGGGCATTGATCAGGACA+AGG | + | chr1_3:58639427-58639446 | None:intergenic | 50.0% |
| !! | GACGTACATGGGCATTGATC+AGG | + | chr1_3:58639433-58639452 | None:intergenic | 50.0% |
| !! | GATGGGTTTGGTGACGTACA+TGG | + | chr1_3:58639445-58639464 | None:intergenic | 50.0% |
| GCGGATGTGTACAAGATGCA+TGG | - | chr1_3:58639930-58639949 | Msa0128800:intron | 50.0% | |
| TATGTGCCTGAGAATGGAGC+TGG | - | chr1_3:58639987-58640006 | Msa0128800:intron | 50.0% | |
| TTGGGTATGACATCTCCCAG+TGG | - | chr1_3:58640509-58640528 | Msa0128800:intron | 50.0% | |
| !! | TGCTTGATTTGTAGGGGCTG+CGG | - | chr1_3:58640627-58640646 | Msa0128800:CDS | 50.0% |
| ! | CGTTGCCAGTTTTCGTAGAC+AGG | - | chr1_3:58640685-58640704 | Msa0128800:intron | 50.0% |
| TTCGTAGACAGGTCGAACCT+TGG | - | chr1_3:58640696-58640715 | Msa0128800:intron | 50.0% | |
| ACAGGTCGAACCTTGGTTTC+TGG | - | chr1_3:58640703-58640722 | Msa0128800:intron | 50.0% | |
| !! | ACCTTGGTTTCTGGCATCAG+TGG | - | chr1_3:58640712-58640731 | Msa0128800:intron | 50.0% |
| TCCACTGATGCCAGAAACCA+AGG | + | chr1_3:58640716-58640735 | None:intergenic | 50.0% | |
| TGGCATCAGTGGAAGTGAGA+TGG | - | chr1_3:58640723-58640742 | Msa0128800:intron | 50.0% | |
| CATCAGTGGAAGTGAGATGG+TGG | - | chr1_3:58640726-58640745 | Msa0128800:intron | 50.0% | |
| !! | AGTGGAAGTGAGATGGTGGA+GGG | - | chr1_3:58640730-58640749 | Msa0128800:intron | 50.0% |
| ! | AGCTGAAGGGTCGGTCATTT+TGG | + | chr1_3:58641100-58641119 | None:intergenic | 50.0% |
| AGTCACTGAAGCTGAAGGGT+CGG | + | chr1_3:58641109-58641128 | None:intergenic | 50.0% | |
| CTGGAACGACATCTTGCTTC+TGG | - | chr1_3:58641402-58641421 | Msa0128800:intron | 50.0% | |
| ACAAGCCCAGACTATGCACA+AGG | - | chr1_3:58641694-58641713 | Msa0128800:intron | 50.0% | |
| TCCCTGGCTTATTGAGCTGA+TGG | - | chr1_3:58641730-58641749 | Msa0128800:intron | 50.0% | |
| GCCATCAGCTCAATAAGCCA+GGG | + | chr1_3:58641734-58641753 | None:intergenic | 50.0% | |
| TGCCATCAGCTCAATAAGCC+AGG | + | chr1_3:58641735-58641754 | None:intergenic | 50.0% | |
| TGGAACTGCGCCAATTGGTT+AGG | + | chr1_3:58642174-58642193 | None:intergenic | 50.0% | |
| TGGCCACAAGTCAGAGAAAC+TGG | + | chr1_3:58642318-58642337 | None:intergenic | 50.0% | |
| TAGCTTACCTCTCGGCACAT+AGG | + | chr1_3:58642426-58642445 | None:intergenic | 50.0% | |
| TGTGCATCAGACCAAGAACC+AGG | - | chr1_3:58642559-58642578 | Msa0128800:intron | 50.0% | |
| ! | TAGGACAGGATCCTGGTTCT+TGG | + | chr1_3:58642573-58642592 | None:intergenic | 50.0% |
| TTGAGCTTAGGACAGGATCC+TGG | + | chr1_3:58642580-58642599 | None:intergenic | 50.0% | |
| GATCCTGTCCTAAGCTCAAC+TGG | - | chr1_3:58642581-58642600 | Msa0128800:intron | 50.0% | |
| AGACCAGTTGAGCTTAGGAC+AGG | + | chr1_3:58642587-58642606 | None:intergenic | 50.0% | |
| AAGGGACGGAGGGAGTAATA+AGG | + | chr1_3:58642884-58642903 | None:intergenic | 50.0% | |
| TGGCTACATTAAGGGACGGA+GGG | + | chr1_3:58642894-58642913 | None:intergenic | 50.0% | |
| TGGGTGGCTACATTAAGGGA+CGG | + | chr1_3:58642898-58642917 | None:intergenic | 50.0% | |
| GGCAATGGGTGGCTACATTA+AGG | + | chr1_3:58642903-58642922 | None:intergenic | 50.0% | |
| GTGCTTAGATATAGGGACGG+AGG | - | chr1_3:58643147-58643166 | Msa0128800:intron | 50.0% | |
| CTGGGAGGAAAGACTTCAGA+TGG | - | chr1_3:58643463-58643482 | Msa0128800:intron | 50.0% | |
| AGAGAGGGTCAAGCAAGCAA+AGG | - | chr1_3:58643493-58643512 | Msa0128800:intron | 50.0% | |
| ! | TCAAGCAAGCAAAGGAGCAC+TGG | - | chr1_3:58643501-58643520 | Msa0128800:intron | 50.0% |
| !! | CAAGCAAGCAAAGGAGCACT+GGG | - | chr1_3:58643502-58643521 | Msa0128800:intron | 50.0% |
| ! | AACGCAGTGTAGAGCGTTCA+TGG | - | chr1_3:58643526-58643545 | Msa0128800:intron | 50.0% |
| ! | ACGCAGTGTAGAGCGTTCAT+GGG | - | chr1_3:58643527-58643546 | Msa0128800:intron | 50.0% |
| ! | GGGGTTATGGGGTTTGGGTT+TGG | + | chr1_3:58639164-58639183 | None:intergenic | 55.0% |
| GGCAAAGGATGCAGCAGTAG+CGG | - | chr1_3:58639911-58639930 | Msa0128800:intron | 55.0% | |
| CTGAGAATGGAGCTGGAGGA+GGG | - | chr1_3:58639994-58640013 | Msa0128800:intron | 55.0% | |
| TGAGAATGGACGTGTGGAGG+TGG | - | chr1_3:58640054-58640073 | Msa0128800:intron | 55.0% | |
| AATGGACGTGTGGAGGTGGT+TGG | - | chr1_3:58640058-58640077 | Msa0128800:intron | 55.0% | |
| AGGTGGTTGGAAGAGGCAGA+TGG | - | chr1_3:58640071-58640090 | Msa0128800:intron | 55.0% | |
| GGTGGTTGGAAGAGGCAGAT+GGG | - | chr1_3:58640072-58640091 | Msa0128800:intron | 55.0% | |
| !! | AGTAGCAGGGATTTGGTGGC+AGG | - | chr1_3:58640569-58640588 | Msa0128800:CDS | 55.0% |
| !! | GTAGCAGGGATTTGGTGGCA+GGG | - | chr1_3:58640570-58640589 | Msa0128800:CDS | 55.0% |
| !!! | GGGATTTGGTGGCAGGGTTT+TGG | - | chr1_3:58640576-58640595 | Msa0128800:CDS | 55.0% |
| ! | GAGCTTGCTCCCAGCCTTAA+CGG | + | chr1_3:58640666-58640685 | None:intergenic | 55.0% |
| ! | CAGTGGAAGTGAGATGGTGG+AGG | - | chr1_3:58640729-58640748 | Msa0128800:intron | 55.0% |
| TCAGCGTGCACAGAAACTGC+TGG | - | chr1_3:58641383-58641402 | Msa0128800:intron | 55.0% | |
| GTGGCTACATTAAGGGACGG+AGG | + | chr1_3:58642895-58642914 | None:intergenic | 55.0% | |
| GTGCCTGAGAATGGAGCTGG+AGG | - | chr1_3:58639990-58640009 | Msa0128800:intron | 60.0% | |
| CCTCCTCCAGCTCCATTCTC+AGG | + | chr1_3:58639996-58640015 | None:intergenic | 60.0% | |
| CCTGAGAATGGAGCTGGAGG+AGG | - | chr1_3:58639993-58640012 | Msa0128800:intron | 60.0% | |
| CGTGTGGAGGTGGTTGGAAG+AGG | - | chr1_3:58640064-58640083 | Msa0128800:intron | 60.0% | |
| !! | CAGCTGCAAGGAGTACTGGG+AGG | - | chr1_3:58643448-58643467 | Msa0128800:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58639105 | 58643876 | 58639105 | ID=Msa0128800;Name=Msa0128800 |
| chr1_3 | mRNA | 58639105 | 58643876 | 58639105 | ID=Msa0128800-mRNA-1;Parent=Msa0128800;Name=Msa0128800-mRNA-1;_AED=0.08;_eAED=0.08;_QI=193|0.5|0.8|1|0.5|0.6|5|339|285 |
| chr1_3 | exon | 58639105 | 58639530 | 58639105 | ID=Msa0128800-mRNA-1:exon:18861;Parent=Msa0128800-mRNA-1 |
| chr1_3 | exon | 58640544 | 58640681 | 58640544 | ID=Msa0128800-mRNA-1:exon:18860;Parent=Msa0128800-mRNA-1 |
| chr1_3 | exon | 58641068 | 58641307 | 58641068 | ID=Msa0128800-mRNA-1:exon:18859;Parent=Msa0128800-mRNA-1 |
| chr1_3 | exon | 58641418 | 58641662 | 58641418 | ID=Msa0128800-mRNA-1:exon:18858;Parent=Msa0128800-mRNA-1 |
| chr1_3 | exon | 58643536 | 58643876 | 58643536 | ID=Msa0128800-mRNA-1:exon:18857;Parent=Msa0128800-mRNA-1 |
| chr1_3 | five_prime_UTR | 58643684 | 58643876 | 58643684 | ID=Msa0128800-mRNA-1:five_prime_utr;Parent=Msa0128800-mRNA-1 |
| chr1_3 | CDS | 58643536 | 58643683 | 58643536 | ID=Msa0128800-mRNA-1:cds;Parent=Msa0128800-mRNA-1 |
| chr1_3 | CDS | 58641418 | 58641662 | 58641418 | ID=Msa0128800-mRNA-1:cds;Parent=Msa0128800-mRNA-1 |
| chr1_3 | CDS | 58641068 | 58641307 | 58641068 | ID=Msa0128800-mRNA-1:cds;Parent=Msa0128800-mRNA-1 |
| chr1_3 | CDS | 58640544 | 58640681 | 58640544 | ID=Msa0128800-mRNA-1:cds;Parent=Msa0128800-mRNA-1 |
| chr1_3 | CDS | 58639444 | 58639530 | 58639444 | ID=Msa0128800-mRNA-1:cds;Parent=Msa0128800-mRNA-1 |
| chr1_3 | three_prime_UTR | 58639105 | 58639443 | 58639105 | ID=Msa0128800-mRNA-1:three_prime_utr;Parent=Msa0128800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
