Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370810 | XP_003591544.1 | 98.101 | 316 | 6 | 0 | 1 | 316 | 1 | 316 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370810 | sp|Q9SRX9|BAH1_ARATH | 65.075 | 335 | 98 | 4 | 1 | 316 | 1 | 335 | 4.36e-157 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370810 | G7IF76 | 98.101 | 316 | 6 | 0 | 1 | 316 | 1 | 316 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043850 | Msa1370810 | 0.825438 | 4.688408e-54 | -8.615850e-47 |
| Msa0052780 | Msa1370810 | 0.801960 | 7.034441e-49 | -8.615850e-47 |
| Msa0077370 | Msa1370810 | 0.861941 | 7.200143e-64 | -8.615850e-47 |
| Msa0081660 | Msa1370810 | 0.802739 | 4.863684e-49 | -8.615850e-47 |
| Msa0082230 | Msa1370810 | 0.918398 | 1.636641e-86 | -8.615850e-47 |
| Msa0082420 | Msa1370810 | 0.926461 | 4.545389e-91 | -8.615850e-47 |
| Msa0086190 | Msa1370810 | 0.810335 | 1.213288e-50 | -8.615850e-47 |
| Msa0090510 | Msa1370810 | 0.822427 | 2.382901e-53 | -8.615850e-47 |
| Msa0094710 | Msa1370810 | 0.801504 | 8.727178e-49 | -8.615850e-47 |
| Msa0097570 | Msa1370810 | 0.810131 | 1.342761e-50 | -8.615850e-47 |
| Msa1370420 | Msa1370810 | 0.803053 | 4.188719e-49 | -8.615850e-47 |
| Msa1370810 | Msa1382380 | -0.855248 | 7.163972e-62 | -8.615850e-47 |
| Msa1370810 | Msa1389640 | 0.811425 | 7.045781e-51 | -8.615850e-47 |
| Msa1370810 | Msa1404290 | 0.833644 | 4.738562e-56 | -8.615850e-47 |
| Msa1370810 | Msa1407880 | 0.804477 | 2.120266e-49 | -8.615850e-47 |
| Msa1370810 | Msa1412410 | 0.806540 | 7.828747e-50 | -8.615850e-47 |
| Msa1370810 | Msa1427860 | 0.801791 | 7.621542e-49 | -8.615850e-47 |
| Msa1370810 | Msa1441040 | 0.814591 | 1.424961e-51 | -8.615850e-47 |
| Msa1370810 | Msa1459190 | 0.801605 | 8.322431e-49 | -8.615850e-47 |
| Msa1370810 | Msa1465860 | 0.803058 | 4.178470e-49 | -8.615850e-47 |
| Msa0641130 | Msa1370810 | 0.818096 | 2.342671e-52 | -8.615850e-47 |
| Msa0694140 | Msa1370810 | 0.803678 | 3.108525e-49 | -8.615850e-47 |
| Msa0697680 | Msa1370810 | 0.814162 | 1.773133e-51 | -8.615850e-47 |
| Msa0708600 | Msa1370810 | 0.809450 | 1.881343e-50 | -8.615850e-47 |
| Msa0734940 | Msa1370810 | 0.814633 | 1.394643e-51 | -8.615850e-47 |
| Msa0744640 | Msa1370810 | 0.825750 | 3.954641e-54 | -8.615850e-47 |
| Msa0810440 | Msa1370810 | 0.803639 | 3.166655e-49 | -8.615850e-47 |
| Msa0841730 | Msa1370810 | 0.826061 | 3.335660e-54 | -8.615850e-47 |
| Msa0127870 | Msa1370810 | 0.827815 | 1.269928e-54 | -8.615850e-47 |
| Msa0128800 | Msa1370810 | 0.830227 | 3.306263e-55 | -8.615850e-47 |
| Msa0128980 | Msa1370810 | 0.825651 | 4.172979e-54 | -8.615850e-47 |
| Msa0137980 | Msa1370810 | 0.825194 | 5.354047e-54 | -8.615850e-47 |
| Msa0174010 | Msa1370810 | 0.828808 | 7.316229e-55 | -8.615850e-47 |
| Msa0174100 | Msa1370810 | 0.806524 | 7.889360e-50 | -8.615850e-47 |
| Msa0174820 | Msa1370810 | 0.865923 | 4.151709e-65 | -8.615850e-47 |
| Msa0183910 | Msa1370810 | 0.813708 | 2.232041e-51 | -8.615850e-47 |
| Msa0196880 | Msa1370810 | 0.804989 | 1.657427e-49 | -8.615850e-47 |
| Msa1225580 | Msa1370810 | 0.802304 | 5.977028e-49 | -8.615850e-47 |
| Msa1229480 | Msa1370810 | 0.814117 | 1.813745e-51 | -8.615850e-47 |
| Msa1252810 | Msa1370810 | 0.800505 | 1.396581e-48 | -8.615850e-47 |
| Msa1266150 | Msa1370810 | 0.834519 | 2.860137e-56 | -8.615850e-47 |
| Msa1307160 | Msa1370810 | 0.801216 | 9.995585e-49 | -8.615850e-47 |
| Msa1309760 | Msa1370810 | 0.834520 | 2.858479e-56 | -8.615850e-47 |
| Msa1312440 | Msa1370810 | 0.802990 | 4.314998e-49 | -8.615850e-47 |
| Msa0365950 | Msa1370810 | 0.821953 | 3.068439e-53 | -8.615850e-47 |
| Msa0366780 | Msa1370810 | 0.817974 | 2.495994e-52 | -8.615850e-47 |
| Msa0380400 | Msa1370810 | -0.809270 | 2.055898e-50 | -8.615850e-47 |
| Msa0388730 | Msa1370810 | 0.819219 | 1.302763e-52 | -8.615850e-47 |
| Msa0390550 | Msa1370810 | 0.828258 | 9.934726e-55 | -8.615850e-47 |
| Msa0403470 | Msa1370810 | -0.816753 | 4.700400e-52 | -8.615850e-47 |
| Msa0413870 | Msa1370810 | 0.806010 | 1.012265e-49 | -8.615850e-47 |
| Msa0982090 | Msa1370810 | -0.853882 | 1.781189e-61 | -8.615850e-47 |
| Msa1011250 | Msa1370810 | 0.803469 | 3.434914e-49 | -8.615850e-47 |
| Msa1016960 | Msa1370810 | 0.831198 | 1.912095e-55 | -8.615850e-47 |
| Msa1022030 | Msa1370810 | 0.831106 | 2.014636e-55 | -8.615850e-47 |
| Msa1023310 | Msa1370810 | 0.825423 | 4.727231e-54 | -8.615850e-47 |
| Msa1031460 | Msa1370810 | 0.825218 | 5.283717e-54 | -8.615850e-47 |
| Msa1058200 | Msa1370810 | 0.832881 | 7.339332e-56 | -8.615850e-47 |
| Msa1062040 | Msa1370810 | 0.861061 | 1.336051e-63 | -8.615850e-47 |
| Msa1070520 | Msa1370810 | 0.812986 | 3.216522e-51 | -8.615850e-47 |
| Msa1070540 | Msa1370810 | 0.841000 | 6.195513e-58 | -8.615850e-47 |
| Msa1101220 | Msa1370810 | 0.811754 | 5.976424e-51 | -8.615850e-47 |
| Msa1101240 | Msa1370810 | 0.840524 | 8.255797e-58 | -8.615850e-47 |
| Msa0276430 | Msa1370810 | 0.805526 | 1.279583e-49 | -8.615850e-47 |
| Msa0302730 | Msa1370810 | 0.806419 | 8.303164e-50 | -8.615850e-47 |
| Msa0310720 | Msa1370810 | -0.807331 | 5.325562e-50 | -8.615850e-47 |
| Msa0310730 | Msa1370810 | -0.823700 | 1.202618e-53 | -8.615850e-47 |
| Msa0316470 | Msa1370810 | 0.806835 | 6.782698e-50 | -8.615850e-47 |
| Msa0331020 | Msa1370810 | 0.813507 | 2.471173e-51 | -8.615850e-47 |
| Msa0332190 | Msa1370810 | 0.815469 | 9.100421e-52 | -8.615850e-47 |
| Msa1107200 | Msa1370810 | 0.850155 | 2.038464e-60 | -8.615850e-47 |
| Msa1113100 | Msa1370810 | 0.816015 | 6.876687e-52 | -8.615850e-47 |
| Msa1150780 | Msa1370810 | 0.855428 | 6.350143e-62 | -8.615850e-47 |
| Msa1152430 | Msa1370810 | 0.811472 | 6.884542e-51 | -8.615850e-47 |
| Msa1158370 | Msa1370810 | 0.806908 | 6.546018e-50 | -8.615850e-47 |
| Msa1168640 | Msa1370810 | 0.827768 | 1.303639e-54 | -8.615850e-47 |
| Msa1173150 | Msa1370810 | 0.810022 | 1.417251e-50 | -8.615850e-47 |
| Msa1180720 | Msa1370810 | 0.815790 | 7.719422e-52 | -8.615850e-47 |
| Msa1183140 | Msa1370810 | 0.822573 | 2.203960e-53 | -8.615850e-47 |
| Msa1188350 | Msa1370810 | 0.818867 | 1.566510e-52 | -8.615850e-47 |
| Msa1208990 | Msa1370810 | 0.807368 | 5.229843e-50 | -8.615850e-47 |
| Msa1218160 | Msa1370810 | 0.816663 | 4.923928e-52 | -8.615850e-47 |
| Msa1220930 | Msa1370810 | 0.833683 | 4.631659e-56 | -8.615850e-47 |
| Msa0517990 | Msa1370810 | 0.803123 | 4.050628e-49 | -8.615850e-47 |
| Msa0529000 | Msa1370810 | 0.855797 | 4.956827e-62 | -8.615850e-47 |
| Msa0545020 | Msa1370810 | 0.807432 | 5.070474e-50 | -8.615850e-47 |
| Msa0545050 | Msa1370810 | 0.818298 | 2.108417e-52 | -8.615850e-47 |
| Msa0584600 | Msa1370810 | 0.801157 | 1.027691e-48 | -8.615850e-47 |
| Msa0588590 | Msa1370810 | 0.815597 | 8.518889e-52 | -8.615850e-47 |
| Msa0592330 | Msa1370810 | 0.801495 | 8.766369e-49 | -8.615850e-47 |
| Msa0600590 | Msa1370810 | 0.834892 | 2.304313e-56 | -8.615850e-47 |
| Msa0864820 | Msa1370810 | -0.817460 | 3.260843e-52 | -8.615850e-47 |
| Msa0875080 | Msa1370810 | 0.827940 | 1.185140e-54 | -8.615850e-47 |
| Msa0881530 | Msa1370810 | -0.826557 | 2.541711e-54 | -8.615850e-47 |
| Msa0907430 | Msa1370810 | 0.825931 | 3.581677e-54 | -8.615850e-47 |
| Msa0940340 | Msa1370810 | 0.837086 | 6.394690e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370810 | MtrunA17_Chr1g0195671 | 98.101 | 316 | 6 | 0 | 1 | 316 | 1 | 316 | 0.0 | 645 |
| Msa1370810 | MtrunA17_Chr7g0269281 | 82.595 | 316 | 55 | 0 | 1 | 316 | 1 | 316 | 0.0 | 533 |
| Msa1370810 | MtrunA17_Chr7g0268131 | 41.945 | 329 | 176 | 4 | 1 | 316 | 1 | 327 | 5.59e-88 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370810 | AT1G02860.1 | 65.075 | 335 | 98 | 4 | 1 | 316 | 1 | 335 | 4.43e-158 | 445 |
| Msa1370810 | AT1G02860.2 | 64.478 | 335 | 98 | 5 | 1 | 316 | 1 | 333 | 1.67e-154 | 436 |
| Msa1370810 | AT1G02860.3 | 62.553 | 235 | 69 | 4 | 1 | 216 | 1 | 235 | 1.37e-95 | 283 |
| Msa1370810 | AT2G38920.5 | 45.896 | 268 | 144 | 1 | 48 | 315 | 68 | 334 | 4.10e-80 | 247 |
| Msa1370810 | AT2G38920.1 | 45.896 | 268 | 144 | 1 | 48 | 315 | 68 | 334 | 4.10e-80 | 247 |
| Msa1370810 | AT2G38920.6 | 45.896 | 268 | 144 | 1 | 48 | 315 | 68 | 334 | 4.10e-80 | 247 |
| Msa1370810 | AT2G38920.2 | 46.269 | 268 | 142 | 2 | 48 | 315 | 68 | 333 | 2.98e-79 | 244 |
| Msa1370810 | AT2G38920.4 | 39.053 | 169 | 102 | 1 | 48 | 216 | 68 | 235 | 1.56e-35 | 129 |
| Msa1370810 | AT2G38920.3 | 36.875 | 160 | 100 | 1 | 48 | 207 | 68 | 226 | 5.83e-30 | 114 |
Find 89 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGCTGTCTCACATTTA+AGG | 0.203509 | tig0019143:-121875 | Msa1370810:CDS |
| GCCTTTACTTTGATCGATTC+TGG | 0.234863 | tig0019143:+120303 | None:intergenic |
| AGGAAGAAAGGATGGGGTTT+GGG | 0.288964 | tig0019143:+124514 | None:intergenic |
| CTGGAACGACATCTTGCTTC+TGG | 0.289645 | tig0019143:-122287 | Msa1370810:CDS |
| TGGCATTACATATCAATCTA+AGG | 0.297202 | tig0019143:-121939 | Msa1370810:CDS |
| GAATTTCCTTGTGCATAGTC+TGG | 0.333742 | tig0019143:+121989 | None:intergenic |
| TTCCTTGCTATGTTCGTGTT+AGG | 0.348168 | tig0019143:+120181 | None:intergenic |
| ATTGAGAAGGGAAGGGAAAA+AGG | 0.353205 | tig0019143:+122358 | None:intergenic |
| AAGGAAGAAAGGATGGGGTT+TGG | 0.354555 | tig0019143:+124513 | None:intergenic |
| TACTATTGTTGATGGGCTTA+AGG | 0.357492 | tig0019143:-121312 | Msa1370810:CDS |
| CAATGAAATGTCAGAAATAG+TGG | 0.363110 | tig0019143:-122339 | Msa1370810:CDS |
| TGGCCACAAGTCAGAGAAAC+TGG | 0.385626 | tig0019143:+121374 | None:intergenic |
| TTTACAGCTGCAAGGAGTAC+TGG | 0.387587 | tig0019143:-120530 | Msa1370810:intron |
| TCAACATGAGAATGTACTTT+CGG | 0.395088 | tig0019143:+122261 | None:intergenic |
| GCATCTGTTACTATTGTTGA+TGG | 0.400772 | tig0019143:-121320 | Msa1370810:CDS |
| TCTGACTTGCTCTATATGTT+TGG | 0.403804 | tig0019143:-121797 | Msa1370810:intron |
| TGTTGAAAGGAAAATCAAAA+AGG | 0.412750 | tig0019143:-122244 | Msa1370810:CDS |
| AACGCAGTGTAGAGCGTTCA+TGG | 0.417759 | tig0019143:-120448 | Msa1370810:CDS |
| ACTTTGGCATCTGTACCTTA+AGG | 0.417794 | tig0019143:-120275 | Msa1370810:three_prime_UTR |
| GAAGTTCTGCAAGACCTATC+AGG | 0.420448 | tig0019143:-124390 | Msa1370810:CDS |
| TTTGAGATAGATATGATAAC+GGG | 0.422854 | tig0019143:-124553 | Msa1370810:five_prime_UTR |
| CAAACCTCACTTGGGTTCAA+TGG | 0.439730 | tig0019143:-120408 | Msa1370810:three_prime_UTR |
| GACGTACATGGGCATTGATC+AGG | 0.450499 | tig0019143:+124260 | None:intergenic |
| AGCTTCTTGAATCCAACTAC+AGG | 0.454546 | tig0019143:+124335 | None:intergenic |
| TCAAGCAAGCAAAGGAGCAC+TGG | 0.456757 | tig0019143:-120473 | Msa1370810:CDS |
| CAGAAGAAGCTCCCTGTAGT+TGG | 0.458661 | tig0019143:-124347 | Msa1370810:CDS |
| CATCTGTTACTATTGTTGAT+GGG | 0.462476 | tig0019143:-121319 | Msa1370810:CDS |
| AGGAAATTCTTCAGAGTCCC+TGG | 0.466281 | tig0019143:-121975 | Msa1370810:CDS |
| ACCAGAATCGATCAAAGTAA+AGG | 0.467205 | tig0019143:-120304 | Msa1370810:three_prime_UTR |
| TATGAACAAGGAAGAAAGGA+TGG | 0.472140 | tig0019143:+124506 | None:intergenic |
| TGCCATCAGCTCAATAAGCC+AGG | 0.477293 | tig0019143:+121957 | None:intergenic |
| TTATGAAGGTGCTGTACACT+TGG | 0.484901 | tig0019143:-120740 | Msa1370810:CDS |
| GATCCAGTTTCTCTGACTTG+TGG | 0.486686 | tig0019143:-121377 | Msa1370810:CDS |
| GACATTTCATTGAGAAGGGA+AGG | 0.489540 | tig0019143:+122350 | None:intergenic |
| TTTCTGACATTTCATTGAGA+AGG | 0.491436 | tig0019143:+122345 | None:intergenic |
| CTCAAATCCTCCTTGCTCTA+CGG | 0.491837 | tig0019143:+124570 | None:intergenic |
| ATTGATCAGGACAAGGTTTG+TGG | 0.494079 | tig0019143:+124273 | None:intergenic |
| AATTTCCTTGTGCATAGTCT+GGG | 0.496401 | tig0019143:+121990 | None:intergenic |
| GCTGGATAATGCATTCTCTC+TGG | 0.501749 | tig0019143:+120208 | None:intergenic |
| ATTTGAGATAGATATGATAA+CGG | 0.508006 | tig0019143:-124554 | Msa1370810:five_prime_UTR |
| GTAGAGAAGCAAACCTCACT+TGG | 0.508655 | tig0019143:-120417 | Msa1370810:three_prime_UTR |
| CATACTACTTTAATTCATGA+AGG | 0.511669 | tig0019143:-122218 | Msa1370810:CDS |
| CAGATTCATTATTCTAAGCA+AGG | 0.514571 | tig0019143:-122033 | Msa1370810:CDS |
| ATAATATGAACAAGGAAGAA+AGG | 0.514625 | tig0019143:+124502 | None:intergenic |
| TGACAGGCAGGAGTTTATGA+AGG | 0.519168 | tig0019143:-120754 | Msa1370810:intron |
| TCAGGAATACATGCGAGCTC+AGG | 0.526255 | tig0019143:-124372 | Msa1370810:CDS |
| AATACTAAAGAAATACGATA+AGG | 0.526973 | tig0019143:-122147 | Msa1370810:intron |
| TTCTGACATTTCATTGAGAA+GGG | 0.527417 | tig0019143:+122346 | None:intergenic |
| TTACAGCTGCAAGGAGTACT+GGG | 0.534094 | tig0019143:-120529 | Msa1370810:intron |
| GGCATTACATATCAATCTAA+GGG | 0.535814 | tig0019143:-121938 | Msa1370810:CDS |
| AAGGCAACCACATTATTCAA+TGG | 0.537425 | tig0019143:-121895 | Msa1370810:CDS |
| TCCCTGGCTTATTGAGCTGA+TGG | 0.545974 | tig0019143:-121959 | Msa1370810:CDS |
| CTGGGAGGAAAGACTTCAGA+TGG | 0.554408 | tig0019143:-120511 | Msa1370810:CDS |
| TCAGCGTGCACAGAAACTGC+TGG | 0.555825 | tig0019143:-122306 | Msa1370810:CDS |
| CACAACTGTAGCAGAATATG+TGG | 0.556209 | tig0019143:+121354 | None:intergenic |
| ATGAACAAGGAAGAAAGGAT+GGG | 0.560709 | tig0019143:+124507 | None:intergenic |
| AGCTCGCATGTATTCCTGAT+AGG | 0.561249 | tig0019143:+124376 | None:intergenic |
| CAAGCAAGCAAAGGAGCACT+GGG | 0.568388 | tig0019143:-120472 | Msa1370810:CDS |
| TCAATATGTTTACAGCTGCA+AGG | 0.570008 | tig0019143:-120538 | Msa1370810:intron |
| TGCTGTCTCACATTTAAGGA+TGG | 0.573316 | tig0019143:-121871 | Msa1370810:CDS |
| TCAGATGGAAAGAGTAGAGA+GGG | 0.577968 | tig0019143:-120496 | Msa1370810:CDS |
| AAGTACATTCTCATGTTGAA+AGG | 0.578077 | tig0019143:-122257 | Msa1370810:CDS |
| GGGAAACTAAAGACAAGTCA+AGG | 0.583655 | tig0019143:-121918 | Msa1370810:CDS |
| TGAACAAGGAAGAAAGGATG+GGG | 0.584638 | tig0019143:+124508 | None:intergenic |
| AATGAAATGTCAGAAATAGT+GGG | 0.585835 | tig0019143:-122338 | Msa1370810:CDS |
| TAACATGTTTCCGTAGAGCA+AGG | 0.586503 | tig0019143:-124580 | None:intergenic |
| ACGCAGTGTAGAGCGTTCAT+GGG | 0.593633 | tig0019143:-120447 | Msa1370810:CDS |
| AGATTCATTATTCTAAGCAA+GGG | 0.597130 | tig0019143:-122032 | Msa1370810:CDS |
| GCCATCAGCTCAATAAGCCA+GGG | 0.598446 | tig0019143:+121958 | None:intergenic |
| ATCCTAACACGAACATAGCA+AGG | 0.601512 | tig0019143:-120183 | Msa1370810:three_prime_UTR |
| CATGGGCATTGATCAGGACA+AGG | 0.604815 | tig0019143:+124266 | None:intergenic |
| AGAGAGGGTCAAGCAAGCAA+AGG | 0.606390 | tig0019143:-120481 | Msa1370810:CDS |
| TAGCTAACCTCTCGGCACAT+AGG | 0.606824 | tig0019143:+121266 | None:intergenic |
| ACATTTCATTGAGAAGGGAA+GGG | 0.609739 | tig0019143:+122351 | None:intergenic |
| AAGAGCTCACAAGCAAGTGA+TGG | 0.610123 | tig0019143:+121844 | None:intergenic |
| AACTAAAGACAAGTCAAGGA+AGG | 0.614374 | tig0019143:-121914 | Msa1370810:CDS |
| ATGTTCGTGTTAGGATACGC+TGG | 0.627501 | tig0019143:+120190 | None:intergenic |
| AGAGAAAGAGAAACAGCGCA+CGG | 0.627878 | tig0019143:+124473 | None:intergenic |
| TACACCATTGAACCCAAGTG+AGG | 0.633884 | tig0019143:+120404 | None:intergenic |
| TAGAGAAGCAAACCTCACTT+GGG | 0.636136 | tig0019143:-120416 | Msa1370810:three_prime_UTR |
| TTCAGATGGAAAGAGTAGAG+AGG | 0.639549 | tig0019143:-120497 | Msa1370810:CDS |
| GCTTCTTGAATCCAACTACA+GGG | 0.643810 | tig0019143:+124336 | None:intergenic |
| CATGTTTCCGTAGAGCAAGG+AGG | 0.677715 | tig0019143:-124577 | None:intergenic |
| GGAAGTGAATAATATGAACA+AGG | 0.680477 | tig0019143:+124494 | None:intergenic |
| TTGAGATAGATATGATAACG+GGG | 0.686299 | tig0019143:-124552 | Msa1370810:five_prime_UTR |
| ACAAGCCCAGACTATGCACA+AGG | 0.690000 | tig0019143:-121995 | Msa1370810:CDS |
| ACAGCATCCATTGAATAATG+TGG | 0.696194 | tig0019143:+121888 | None:intergenic |
| AAAATGTCCTATGTGCCGAG+AGG | 0.727589 | tig0019143:-121273 | Msa1370810:intron |
| CAGCTGCAAGGAGTACTGGG+AGG | 0.743316 | tig0019143:-120526 | Msa1370810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTATTATCAATTTTG+TGG | - | tig0019143:120837-120856 | Msa1370810:intron | 10.0% |
| !!! | TTAATTATTATCAATTTTGT+GGG | - | tig0019143:120838-120857 | Msa1370810:intron | 10.0% |
| !! | ACATTTCATTAATAATAATA+AGG | + | tig0019143:123885-123904 | None:intergenic | 10.0% |
| !! | AAATAATTAATCGAAATGAT+GGG | + | tig0019143:120461-120480 | None:intergenic | 15.0% |
| !! | AAAATAATTAATCGAAATGA+TGG | + | tig0019143:120462-120481 | None:intergenic | 15.0% |
| !! | CAAACATTTGAAAATAATTT+GGG | + | tig0019143:120527-120546 | None:intergenic | 15.0% |
| !! | TCAAACATTTGAAAATAATT+TGG | + | tig0019143:120528-120547 | None:intergenic | 15.0% |
| !!! | TAATTATTATCAATTTTGTG+GGG | - | tig0019143:120839-120858 | Msa1370810:intron | 15.0% |
| !!! | TGAGTAAATATAATTTTTTG+TGG | + | tig0019143:123068-123087 | None:intergenic | 15.0% |
| !!! | TTCAATTGATAATTTTAATC+TGG | - | tig0019143:123263-123282 | Msa1370810:intron | 15.0% |
| !!! | TAATTCAATTCATTTGTTAA+TGG | + | tig0019143:124020-124039 | None:intergenic | 15.0% |
| !! | ATTGAATTAAAATAAAGAGA+TGG | - | tig0019143:124031-124050 | Msa1370810:intron | 15.0% |
| !! | GTAAACATATTGAAATTATA+AGG | + | tig0019143:124144-124163 | None:intergenic | 15.0% |
| !!! | ATTTGAGATAGATATGATAA+CGG | - | tig0019143:120135-120154 | Msa1370810:three_prime_UTR | 20.0% |
| !! | GATGAATAAAAATTGAATGA+AGG | + | tig0019143:120597-120616 | None:intergenic | 20.0% |
| !! | AAATTCATGAACTAAATTGA+TGG | + | tig0019143:120703-120722 | None:intergenic | 20.0% |
| !! | TAGGAGTTTCATTAATATTA+AGG | + | tig0019143:120729-120748 | None:intergenic | 20.0% |
| !! | TTAATATTGAGAGTTCATTT+AGG | + | tig0019143:120748-120767 | None:intergenic | 20.0% |
| !! | TAATTAATTATATGTCCTTC+AGG | + | tig0019143:120825-120844 | None:intergenic | 20.0% |
| !! | ATAATAAATTGATGAAGTGT+TGG | + | tig0019143:121153-121172 | None:intergenic | 20.0% |
| !! | ATATAATTATGGTGTGAAAT+TGG | - | tig0019143:121464-121483 | Msa1370810:intron | 20.0% |
| !!! | GATATTTCAATTGTATTGAT+TGG | - | tig0019143:121919-121938 | Msa1370810:CDS | 20.0% |
| !! | TATAAGAATTAAGAGTTTGT+AGG | - | tig0019143:122155-122174 | Msa1370810:CDS | 20.0% |
| !!! | TATAATGATGTCATTTTCTT+TGG | - | tig0019143:122208-122227 | Msa1370810:CDS | 20.0% |
| !!! | ATAATGATGTCATTTTCTTT+GGG | - | tig0019143:122209-122228 | Msa1370810:CDS | 20.0% |
| !! | AATACTAAAGAAATACGATA+AGG | - | tig0019143:122542-122561 | Msa1370810:intron | 20.0% |
| !! | AAAAGAAAAGAAAAAAGTGA+AGG | + | tig0019143:123243-123262 | None:intergenic | 20.0% |
| !! | AAAAGTTATTGATGTAAGAA+TGG | + | tig0019143:123482-123501 | None:intergenic | 20.0% |
| !! | TTTCAATGGTAAAAATTAAC+AGG | + | tig0019143:123660-123679 | None:intergenic | 20.0% |
| !!! | GTCTTTATTTATAGTGAAAA+AGG | + | tig0019143:123830-123849 | None:intergenic | 20.0% |
| !!! | TTTTCACTATAAATAAAGAC+TGG | - | tig0019143:123830-123849 | Msa1370810:intron | 20.0% |
| !! | TTTCACTATAAATAAAGACT+GGG | - | tig0019143:123831-123850 | Msa1370810:intron | 20.0% |
| !!! | AATTTTATACTGTTTATGAC+AGG | - | tig0019143:123919-123938 | Msa1370810:intron | 20.0% |
| !!! | GAAGAATTGAATATTTTGTT+AGG | - | tig0019143:123971-123990 | Msa1370810:intron | 20.0% |
| !!! | TGAATATTTTGTTAGGAAAA+AGG | - | tig0019143:123978-123997 | Msa1370810:intron | 20.0% |
| !! | TTTGAGATAGATATGATAAC+GGG | - | tig0019143:120136-120155 | Msa1370810:three_prime_UTR | 25.0% |
| ! | ATAATATGAACAAGGAAGAA+AGG | + | tig0019143:120190-120209 | None:intergenic | 25.0% |
| !!! | CTCTCATTAGTCATTTTTAT+TGG | - | tig0019143:120616-120635 | Msa1370810:intron | 25.0% |
| !! | CTCAAATTACTCCTTTTAAT+CGG | - | tig0019143:120780-120799 | Msa1370810:intron | 25.0% |
| ! | CTTGTTTAAGAATATGAGAA+TGG | - | tig0019143:121040-121059 | Msa1370810:intron | 25.0% |
| ! | CAATTTATTATTCTTTGCTC+AGG | - | tig0019143:121162-121181 | Msa1370810:intron | 25.0% |
| ! | TGGTGGAAAACATATAATTA+TGG | - | tig0019143:121453-121472 | Msa1370810:intron | 25.0% |
| ! | ATAGGTAATGCTTAATGAAA+AGG | - | tig0019143:121818-121837 | Msa1370810:CDS | 25.0% |
| ! | TAGGTAATGCTTAATGAAAA+GGG | - | tig0019143:121819-121838 | Msa1370810:CDS | 25.0% |
| !!! | AGAATTGTTTTTGAAGGAAT+TGG | - | tig0019143:121868-121887 | Msa1370810:CDS | 25.0% |
| !!! | GAATTGTTTTTGAAGGAATT+GGG | - | tig0019143:121869-121888 | Msa1370810:CDS | 25.0% |
| !!! | TTCAATTGTATTGATTGGAT+TGG | - | tig0019143:121924-121943 | Msa1370810:CDS | 25.0% |
| ! | TTCTTATAATAGACTACAAG+CGG | + | tig0019143:122143-122162 | None:intergenic | 25.0% |
| ! | AATGAAATGTCAGAAATAGT+GGG | - | tig0019143:122351-122370 | Msa1370810:CDS | 25.0% |
| ! | TGTTGAAAGGAAAATCAAAA+AGG | - | tig0019143:122445-122464 | Msa1370810:intron | 25.0% |
| ! | CATACTACTTTAATTCATGA+AGG | - | tig0019143:122471-122490 | Msa1370810:intron | 25.0% |
| !! | TTTCTTTTGCATGCTAATTT+TGG | - | tig0019143:122583-122602 | Msa1370810:intron | 25.0% |
| ! | AGATTCATTATTCTAAGCAA+GGG | - | tig0019143:122657-122676 | Msa1370810:intron | 25.0% |
| !! | CAGATCAATATCAATTTTGA+TGG | + | tig0019143:122876-122895 | None:intergenic | 25.0% |
| ! | TTGTATTGAAATTGTAAACC+AGG | - | tig0019143:123027-123046 | Msa1370810:intron | 25.0% |
| ! | ATAGTTTCAAATATGTGACA+TGG | - | tig0019143:123104-123123 | Msa1370810:intron | 25.0% |
| ! | GGAAAATATTGAACAACATA+AGG | + | tig0019143:123153-123172 | None:intergenic | 25.0% |
| !! | TCAATATTTTCCTAACCAAT+TGG | - | tig0019143:123161-123180 | Msa1370810:intron | 25.0% |
| !! | AAGAAGATCTAAAGTTTCAA+TGG | + | tig0019143:123674-123693 | None:intergenic | 25.0% |
| !!! | CAGAACTGTTTACTTATTTT+AGG | - | tig0019143:123768-123787 | Msa1370810:intron | 25.0% |
| ! | TTCACTATAAATAAAGACTG+GGG | - | tig0019143:123832-123851 | Msa1370810:intron | 25.0% |
| ! | AATATAACACCACAATTAAG+AGG | + | tig0019143:124088-124107 | None:intergenic | 25.0% |
| ! | AATTATAAGGTTAAGACACT+TGG | + | tig0019143:124131-124150 | None:intergenic | 25.0% |
| !! | AAAGTAAAGGCTTTTTACTT+TGG | - | tig0019143:124398-124417 | Msa1370810:exon | 25.0% |
| ! | ATACACTAGCCAAAAATAAA+TGG | + | tig0019143:124440-124459 | None:intergenic | 25.0% |
| ! | TTGAGATAGATATGATAACG+GGG | - | tig0019143:120137-120156 | Msa1370810:three_prime_UTR | 30.0% |
| GGAAGTGAATAATATGAACA+AGG | + | tig0019143:120198-120217 | None:intergenic | 30.0% | |
| TAAAAACATCAGAGAGAAAG+AGG | + | tig0019143:120270-120289 | None:intergenic | 30.0% | |
| !! | ATTAATCGAAATGATGGGTT+CGG | + | tig0019143:120456-120475 | None:intergenic | 30.0% |
| ATATATTCACGATCCAATTC+AGG | - | tig0019143:120569-120588 | Msa1370810:intron | 30.0% | |
| AAGACTAATGTCCGATTAAA+AGG | + | tig0019143:120794-120813 | None:intergenic | 30.0% | |
| ! | TAGTCTTAAATTTGTCCTGA+AGG | - | tig0019143:120807-120826 | Msa1370810:intron | 30.0% |
| ! | TTATTATCAATTTTGTGGGG+AGG | - | tig0019143:120842-120861 | Msa1370810:intron | 30.0% |
| ! | TATTATCAATTTTGTGGGGA+GGG | - | tig0019143:120843-120862 | Msa1370810:intron | 30.0% |
| ACATATTAAACTGCTCACTA+AGG | + | tig0019143:120875-120894 | None:intergenic | 30.0% | |
| TATGTTATTCACTAGTACTG+TGG | - | tig0019143:120890-120909 | Msa1370810:intron | 30.0% | |
| TTTATTATTCTTTGCTCAGG+AGG | - | tig0019143:121165-121184 | Msa1370810:intron | 30.0% | |
| !!! | TGTCGATGGTTGTTTTAAAA+TGG | - | tig0019143:121247-121266 | Msa1370810:intron | 30.0% |
| !!! | ATGGTTGTTTTAAAATGGCT+GGG | - | tig0019143:121252-121271 | Msa1370810:intron | 30.0% |
| !!! | AGAGCATCGATAATTTTGTA+TGG | - | tig0019143:121360-121379 | Msa1370810:CDS | 30.0% |
| ! | TAATTTTGTATGGTTGTGTG+TGG | - | tig0019143:121370-121389 | Msa1370810:CDS | 30.0% |
| TGTGGAAAATTTGCAAAGTA+TGG | - | tig0019143:121388-121407 | Msa1370810:CDS | 30.0% | |
| AAAATTTGCAAAGTATGGCA+TGG | - | tig0019143:121393-121412 | Msa1370810:intron | 30.0% | |
| TTGGTTAGATGGTAAGATTA+AGG | - | tig0019143:121483-121502 | Msa1370810:intron | 30.0% | |
| TGGTTAGATGGTAAGATTAA+GGG | - | tig0019143:121484-121503 | Msa1370810:intron | 30.0% | |
| ATGGTAAGATTAAGGGATTT+GGG | - | tig0019143:121491-121510 | Msa1370810:intron | 30.0% | |
| !! | ATTGGTTTGATAAACATGCA+TGG | - | tig0019143:121771-121790 | Msa1370810:intron | 30.0% |
| ATCAGAACTTCAGAAGAAAA+TGG | - | tig0019143:121794-121813 | Msa1370810:intron | 30.0% | |
| ACTTCAGAAGAAAATGGTAT+AGG | - | tig0019143:121800-121819 | Msa1370810:CDS | 30.0% | |
| !!! | AGCAGAAGAATTGTTTTTGA+AGG | - | tig0019143:121862-121881 | Msa1370810:CDS | 30.0% |
| !! | ACTGTTAAGTGCTATTTAGA+CGG | - | tig0019143:121896-121915 | Msa1370810:CDS | 30.0% |
| !! | ATTGTAGAATTTGTTGCACA+AGG | - | tig0019143:121980-121999 | Msa1370810:CDS | 30.0% |
| ACTTCACTAATTAACTCTGA+TGG | + | tig0019143:122020-122039 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTGGGTACAGATT+GGG | - | tig0019143:122220-122239 | Msa1370810:CDS | 30.0% |
| !! | TTATTTTATTCAGTGTGCGA+TGG | - | tig0019143:122306-122325 | Msa1370810:CDS | 30.0% |
| ! | TATTTTATTCAGTGTGCGAT+GGG | - | tig0019143:122307-122326 | Msa1370810:CDS | 30.0% |
| TTCTGACATTTCATTGAGAA+GGG | + | tig0019143:122346-122365 | None:intergenic | 30.0% | |
| TTTCTGACATTTCATTGAGA+AGG | + | tig0019143:122347-122366 | None:intergenic | 30.0% | |
| CAATGAAATGTCAGAAATAG+TGG | - | tig0019143:122350-122369 | Msa1370810:CDS | 30.0% | |
| TCAACATGAGAATGTACTTT+CGG | + | tig0019143:122431-122450 | None:intergenic | 30.0% | |
| AAGTACATTCTCATGTTGAA+AGG | - | tig0019143:122432-122451 | Msa1370810:intron | 30.0% | |
| CAGATTCATTATTCTAAGCA+AGG | - | tig0019143:122656-122675 | Msa1370810:intron | 30.0% | |
| TGGCATTACATATCAATCTA+AGG | - | tig0019143:122750-122769 | Msa1370810:intron | 30.0% | |
| GGCATTACATATCAATCTAA+GGG | - | tig0019143:122751-122770 | Msa1370810:intron | 30.0% | |
| ! | TTTTGTGGAACCATAAAACT+AGG | + | tig0019143:123053-123072 | None:intergenic | 30.0% |
| ! | AGAAAAGTATACCGATAATG+TGG | + | tig0019143:123194-123213 | None:intergenic | 30.0% |
| CATCTGTTACTATTGTTGAT+GGG | - | tig0019143:123370-123389 | Msa1370810:intron | 30.0% | |
| AAATTAACAGGCCTTAACAA+AGG | + | tig0019143:123648-123667 | None:intergenic | 30.0% | |
| GAAGCTAAACAATTACAGAA+GGG | + | tig0019143:123712-123731 | None:intergenic | 30.0% | |
| AGAAGCTAAACAATTACAGA+AGG | + | tig0019143:123713-123732 | None:intergenic | 30.0% | |
| ! | TTCTGTAATTGTTTAGCTTC+TGG | - | tig0019143:123712-123731 | Msa1370810:intron | 30.0% |
| GCTGAATAAGTATAATTGAG+CGG | - | tig0019143:123800-123819 | Msa1370810:intron | 30.0% | |
| ! | CATTTTCACAAGATTGTTGA+AGG | - | tig0019143:124353-124372 | Msa1370810:CDS | 30.0% |
| !! | ACCTTAAGGCCATTTATTTT+TGG | - | tig0019143:124428-124447 | Msa1370810:five_prime_UTR | 30.0% |
| ATGAACAAGGAAGAAAGGAT+GGG | + | tig0019143:120185-120204 | None:intergenic | 35.0% | |
| TATGAACAAGGAAGAAAGGA+TGG | + | tig0019143:120186-120205 | None:intergenic | 35.0% | |
| TTGAATGAAGGAACCTGAAT+TGG | + | tig0019143:120585-120604 | None:intergenic | 35.0% | |
| TTTGACACGTGATTCATGAT+TGG | - | tig0019143:120645-120664 | Msa1370810:intron | 35.0% | |
| ! | ATTATCAATTTTGTGGGGAG+GGG | - | tig0019143:120844-120863 | Msa1370810:intron | 35.0% |
| ! | GTTGGTAAATGATAACCTCT+TGG | + | tig0019143:121135-121154 | None:intergenic | 35.0% |
| TTGAGTACTCGAAATTGTCA+AGG | - | tig0019143:121223-121242 | Msa1370810:intron | 35.0% | |
| TGAGTACTCGAAATTGTCAA+GGG | - | tig0019143:121224-121243 | Msa1370810:intron | 35.0% | |
| !!! | GATGGTTGTTTTAAAATGGC+TGG | - | tig0019143:121251-121270 | Msa1370810:intron | 35.0% |
| AAATGATCGCTGCTGTTATT+TGG | + | tig0019143:121294-121313 | None:intergenic | 35.0% | |
| !! | TGATTGCAAGACTGTTTTGA+GGG | - | tig0019143:121319-121338 | Msa1370810:CDS | 35.0% |
| !! | GTGGAGTGTTTTGTAATAAG+AGG | - | tig0019143:121415-121434 | Msa1370810:intron | 35.0% |
| ! | GAGTGTTTTGTAATAAGAGG+AGG | - | tig0019143:121418-121437 | Msa1370810:intron | 35.0% |
| ATGGTGTGAAATTGGTTAGA+TGG | - | tig0019143:121472-121491 | Msa1370810:intron | 35.0% | |
| GATGGTAAGATTAAGGGATT+TGG | - | tig0019143:121490-121509 | Msa1370810:intron | 35.0% | |
| CAGTGAATTTGAAAACCACT+GGG | + | tig0019143:121527-121546 | None:intergenic | 35.0% | |
| AGAAAATAGTAGCAGGGATT+TGG | - | tig0019143:121562-121581 | Msa1370810:intron | 35.0% | |
| TTTCTGCATAACAGTCATAC+TGG | - | tig0019143:121602-121621 | Msa1370810:intron | 35.0% | |
| !! | TACTGGTATGCTTGATTTGT+AGG | - | tig0019143:121619-121638 | Msa1370810:intron | 35.0% |
| !! | ACTGGTATGCTTGATTTGTA+GGG | - | tig0019143:121620-121639 | Msa1370810:intron | 35.0% |
| GTTATGAAGCTATACCGTTA+AGG | - | tig0019143:121649-121668 | Msa1370810:intron | 35.0% | |
| ! | TGAGTGTTACTCGTCTTAAT+TGG | - | tig0019143:121753-121772 | Msa1370810:intron | 35.0% |
| !! | CTGTTAAGTGCTATTTAGAC+GGG | - | tig0019143:121897-121916 | Msa1370810:CDS | 35.0% |
| TCACTAATTAACTCTGATGG+AGG | + | tig0019143:122017-122036 | None:intergenic | 35.0% | |
| ATTTAGTCACTGAAGCTGAA+GGG | + | tig0019143:122113-122132 | None:intergenic | 35.0% | |
| AATTTAGTCACTGAAGCTGA+AGG | + | tig0019143:122114-122133 | None:intergenic | 35.0% | |
| ! | CATTTTCTTTGGGTACAGAT+TGG | - | tig0019143:122219-122238 | Msa1370810:CDS | 35.0% |
| ! | TTTTCTTTGGGTACAGATTG+GGG | - | tig0019143:122221-122240 | Msa1370810:CDS | 35.0% |
| ACATTTCATTGAGAAGGGAA+GGG | + | tig0019143:122341-122360 | None:intergenic | 35.0% | |
| AATTTCCTTGTGCATAGTCT+GGG | + | tig0019143:122702-122721 | None:intergenic | 35.0% | |
| AACTAAAGACAAGTCAAGGA+AGG | - | tig0019143:122775-122794 | Msa1370810:intron | 35.0% | |
| AAGGCAACCACATTATTCAA+TGG | - | tig0019143:122794-122813 | Msa1370810:intron | 35.0% | |
| ACAGCATCCATTGAATAATG+TGG | + | tig0019143:122804-122823 | None:intergenic | 35.0% | |
| !! | TCTGACTTGCTCTATATGTT+TGG | - | tig0019143:122892-122911 | Msa1370810:intron | 35.0% |
| ! | TCTGTACATGACTCTCATTT+TGG | - | tig0019143:122954-122973 | Msa1370810:intron | 35.0% |
| TTGAACAACATAAGGAGATC+TGG | + | tig0019143:123145-123164 | None:intergenic | 35.0% | |
| !! | GTGAAAGTGTCTCTCTTATA+AGG | - | tig0019143:123216-123235 | Msa1370810:intron | 35.0% |
| GCATCTGTTACTATTGTTGA+TGG | - | tig0019143:123369-123388 | Msa1370810:intron | 35.0% | |
| !! | TACTATTGTTGATGGGCTTA+AGG | - | tig0019143:123377-123396 | Msa1370810:intron | 35.0% |
| TAATGAGATCCTACTGCATA+TGG | + | tig0019143:123449-123468 | None:intergenic | 35.0% | |
| TTCAAAGACCAATTGAGCTT+AGG | + | tig0019143:123593-123612 | None:intergenic | 35.0% | |
| TTATACTGTTTATGACAGGC+AGG | - | tig0019143:123923-123942 | Msa1370810:intron | 35.0% | |
| GATCGAAAACAGACTCTAAA+TGG | + | tig0019143:124066-124085 | None:intergenic | 35.0% | |
| ! | GTTTTCGATCCTCTTAATTG+TGG | - | tig0019143:124076-124095 | Msa1370810:intron | 35.0% |
| TCAATATGTTTACAGCTGCA+AGG | - | tig0019143:124151-124170 | Msa1370810:intron | 35.0% | |
| ACCAGAATCGATCAAAGTAA+AGG | - | tig0019143:124385-124404 | Msa1370810:CDS | 35.0% | |
| ! | GCCAAAAATAAATGGCCTTA+AGG | + | tig0019143:124432-124451 | None:intergenic | 35.0% |
| ! | ATCATACATGTTTTGTCCTG+TGG | + | tig0019143:124537-124556 | None:intergenic | 35.0% |
| TGAACAAGGAAGAAAGGATG+GGG | + | tig0019143:120184-120203 | None:intergenic | 40.0% | |
| GCTTCTTGAATCCAACTACA+GGG | + | tig0019143:120356-120375 | None:intergenic | 40.0% | |
| AGCTTCTTGAATCCAACTAC+AGG | + | tig0019143:120357-120376 | None:intergenic | 40.0% | |
| ATTGATCAGGACAAGGTTTG+TGG | + | tig0019143:120419-120438 | None:intergenic | 40.0% | |
| ! | TTATCAATTTTGTGGGGAGG+GGG | - | tig0019143:120845-120864 | Msa1370810:intron | 40.0% |
| ATTCACTAGTACTGTGGCAA+AGG | - | tig0019143:120896-120915 | Msa1370810:intron | 40.0% | |
| ATGTGTACAAGATGCATGGA+GGG | - | tig0019143:120934-120953 | Msa1370810:intron | 40.0% | |
| TTCTCAGGCACATACAAGTA+AGG | + | tig0019143:120981-121000 | None:intergenic | 40.0% | |
| TACTTGTATGTGCCTGAGAA+TGG | - | tig0019143:120981-121000 | Msa1370810:intron | 40.0% | |
| AGAATATGAGAATGGACGTG+TGG | - | tig0019143:121048-121067 | Msa1370810:intron | 40.0% | |
| AGGCAGTGTATAAGGAGATA+TGG | - | tig0019143:121108-121127 | Msa1370810:intron | 40.0% | |
| GGCAGTGTATAAGGAGATAT+GGG | - | tig0019143:121109-121128 | Msa1370810:intron | 40.0% | |
| ! | CTGATTGCAAGACTGTTTTG+AGG | - | tig0019143:121318-121337 | Msa1370810:CDS | 40.0% |
| ATTTGCAAAGTATGGCATGG+TGG | - | tig0019143:121396-121415 | Msa1370810:intron | 40.0% | |
| ! | AGAGGAGGATGTAATTTTCG+TGG | - | tig0019143:121433-121452 | Msa1370810:intron | 40.0% |
| GCAGTGAATTTGAAAACCAC+TGG | + | tig0019143:121528-121547 | None:intergenic | 40.0% | |
| TTCAAATTCACTGCTATGCC+TGG | - | tig0019143:121534-121553 | Msa1370810:intron | 40.0% | |
| TCAAATTCACTGCTATGCCT+GGG | - | tig0019143:121535-121554 | Msa1370810:intron | 40.0% | |
| GGCTTGAGAAAATAGTAGCA+GGG | - | tig0019143:121556-121575 | Msa1370810:intron | 40.0% | |
| AAATAGTAGCAGGGATTTGG+TGG | - | tig0019143:121565-121584 | Msa1370810:intron | 40.0% | |
| !! | CTGGTATGCTTGATTTGTAG+GGG | - | tig0019143:121621-121640 | Msa1370810:intron | 40.0% |
| TTCGACCTGTCTACAAAAAC+TGG | + | tig0019143:121693-121712 | None:intergenic | 40.0% | |
| TTTCTTTGGGTACAGATTGG+GGG | - | tig0019143:122222-122241 | Msa1370810:CDS | 40.0% | |
| ! | ATTACACCGTGTTAGCTTAG+AGG | + | tig0019143:122287-122306 | None:intergenic | 40.0% |
| ATTGAGAAGGGAAGGGAAAA+AGG | + | tig0019143:122334-122353 | None:intergenic | 40.0% | |
| GACATTTCATTGAGAAGGGA+AGG | + | tig0019143:122342-122361 | None:intergenic | 40.0% | |
| GAATTTCCTTGTGCATAGTC+TGG | + | tig0019143:122703-122722 | None:intergenic | 40.0% | |
| GGGAAACTAAAGACAAGTCA+AGG | - | tig0019143:122771-122790 | Msa1370810:intron | 40.0% | |
| TGGATGCTGTCTCACATTTA+AGG | - | tig0019143:122814-122833 | Msa1370810:intron | 40.0% | |
| TGCTGTCTCACATTTAAGGA+TGG | - | tig0019143:122818-122837 | Msa1370810:intron | 40.0% | |
| !!! | GTAAACCAGGCCTAGTTTTA+TGG | - | tig0019143:123040-123059 | Msa1370810:intron | 40.0% |
| CACAACTGTAGCAGAATATG+TGG | + | tig0019143:123338-123357 | None:intergenic | 40.0% | |
| AATTTGCCCGACCTTTGTTA+AGG | - | tig0019143:123634-123653 | Msa1370810:intron | 40.0% | |
| TAACAGGCCTTAACAAAGGT+CGG | + | tig0019143:123644-123663 | None:intergenic | 40.0% | |
| AGACTGGGGATGTTAAGAAT+TGG | - | tig0019143:123846-123865 | Msa1370810:intron | 40.0% | |
| !! | TTATGAAGGTGCTGTACACT+TGG | - | tig0019143:123949-123968 | Msa1370810:intron | 40.0% |
| TTCAGATGGAAAGAGTAGAG+AGG | - | tig0019143:124192-124211 | Msa1370810:intron | 40.0% | |
| TCAGATGGAAAGAGTAGAGA+GGG | - | tig0019143:124193-124212 | Msa1370810:intron | 40.0% | |
| TAGAGAAGCAAACCTCACTT+GGG | - | tig0019143:124273-124292 | Msa1370810:CDS | 40.0% | |
| ! | GCCTTTACTTTGATCGATTC+TGG | + | tig0019143:124389-124408 | None:intergenic | 40.0% |
| ACTTTGGCATCTGTACCTTA+AGG | - | tig0019143:124414-124433 | Msa1370810:exon | 40.0% | |
| ATCCTAACACGAACATAGCA+AGG | - | tig0019143:124506-124525 | Msa1370810:five_prime_UTR | 40.0% | |
| ! | TTCCTTGCTATGTTCGTGTT+AGG | + | tig0019143:124511-124530 | None:intergenic | 40.0% |
| ACATAGCAAGGAAAAACCAC+AGG | - | tig0019143:124518-124537 | Msa1370810:five_prime_UTR | 40.0% | |
| AGGAAGAAAGGATGGGGTTT+GGG | + | tig0019143:120178-120197 | None:intergenic | 45.0% | |
| AAGGAAGAAAGGATGGGGTT+TGG | + | tig0019143:120179-120198 | None:intergenic | 45.0% | |
| AGAGAAAGAGAAACAGCGCA+CGG | + | tig0019143:120219-120238 | None:intergenic | 45.0% | |
| GAAGTTCTGCAAGACCTATC+AGG | - | tig0019143:120299-120318 | Msa1370810:three_prime_UTR | 45.0% | |
| AGCTCGCATGTATTCCTGAT+AGG | + | tig0019143:120316-120335 | None:intergenic | 45.0% | |
| GATGTGTACAAGATGCATGG+AGG | - | tig0019143:120933-120952 | Msa1370810:intron | 45.0% | |
| GAGGAGGGAGTCATTTCATT+TGG | - | tig0019143:121009-121028 | Msa1370810:intron | 45.0% | |
| ATATGAGAATGGACGTGTGG+AGG | - | tig0019143:121051-121070 | Msa1370810:intron | 45.0% | |
| AGATGGGATCTACTCTGTGA+AGG | - | tig0019143:121088-121107 | Msa1370810:intron | 45.0% | |
| CTCTGTGAAGGCAGTGTATA+AGG | - | tig0019143:121100-121119 | Msa1370810:intron | 45.0% | |
| ATAAGGAGATATGGGCCAAG+AGG | - | tig0019143:121117-121136 | Msa1370810:intron | 45.0% | |
| !! | GAAATTGTCAAGGGTGTCGA+TGG | - | tig0019143:121233-121252 | Msa1370810:intron | 45.0% |
| ! | GCTGCTGTTATTTGGTAGCA+CGG | + | tig0019143:121286-121305 | None:intergenic | 45.0% |
| ! | GGAGGATGTAATTTTCGTGG+TGG | - | tig0019143:121436-121455 | Msa1370810:intron | 45.0% |
| ! | GCTACTATTTTCTCAAGCCC+AGG | + | tig0019143:121555-121574 | None:intergenic | 45.0% |
| GGGCTTGAGAAAATAGTAGC+AGG | - | tig0019143:121555-121574 | Msa1370810:intron | 45.0% | |
| TGAAGCTATACCGTTAAGGC+TGG | - | tig0019143:121653-121672 | Msa1370810:intron | 45.0% | |
| GAAGCTATACCGTTAAGGCT+GGG | - | tig0019143:121654-121673 | Msa1370810:intron | 45.0% | |
| ! | CGTTGCCAGTTTTTGTAGAC+AGG | - | tig0019143:121685-121704 | Msa1370810:intron | 45.0% |
| TTTGTAGACAGGTCGAACCT+TGG | - | tig0019143:121696-121715 | Msa1370810:intron | 45.0% | |
| ! | CGTGTTAGCTTAGAGGTAGT+GGG | + | tig0019143:122280-122299 | None:intergenic | 45.0% |
| CCACTACCTCTAAGCTAACA+CGG | - | tig0019143:122278-122297 | Msa1370810:CDS | 45.0% | |
| AGGAAATTCTTCAGAGTCCC+TGG | - | tig0019143:122714-122733 | Msa1370810:intron | 45.0% | |
| AAGAGCTCACAAGCAAGTGA+TGG | + | tig0019143:122848-122867 | None:intergenic | 45.0% | |
| TGGAACCATAAAACTAGGCC+TGG | + | tig0019143:123048-123067 | None:intergenic | 45.0% | |
| TAATGTGGAACTGCGCCAAT+TGG | + | tig0019143:123179-123198 | None:intergenic | 45.0% | |
| TTGGCGCAGTTCCACATTAT+CGG | - | tig0019143:123180-123199 | Msa1370810:intron | 45.0% | |
| !! | TAATCTGGCTCTTCCATGAC+AGG | - | tig0019143:123278-123297 | Msa1370810:intron | 45.0% |
| TCAAACACTGTGTCCTGTCA+TGG | + | tig0019143:123294-123313 | None:intergenic | 45.0% | |
| ! | GATCCAGTTTCTCTGACTTG+TGG | - | tig0019143:123312-123331 | Msa1370810:intron | 45.0% |
| AAAATGTCCTATGTGCCGAG+AGG | - | tig0019143:123416-123435 | Msa1370810:intron | 45.0% | |
| GCATATGGTAGCTAACCTCT+CGG | + | tig0019143:123434-123453 | None:intergenic | 45.0% | |
| ! | GGTTAGCTACCATATGCAGT+AGG | - | tig0019143:123437-123456 | Msa1370810:intron | 45.0% |
| GCAGTAGGATCTCATTAGAG+TGG | - | tig0019143:123452-123471 | Msa1370810:intron | 45.0% | |
| GATCCTGTCCTAAGCTCAAT+TGG | - | tig0019143:123582-123601 | Msa1370810:intron | 45.0% | |
| AGACCAATTGAGCTTAGGAC+AGG | + | tig0019143:123588-123607 | None:intergenic | 45.0% | |
| AACAGGCCTTAACAAAGGTC+GGG | + | tig0019143:123643-123662 | None:intergenic | 45.0% | |
| TGACAGGCAGGAGTTTATGA+AGG | - | tig0019143:123935-123954 | Msa1370810:intron | 45.0% | |
| ! | TTTACAGCTGCAAGGAGTAC+TGG | - | tig0019143:124159-124178 | Msa1370810:intron | 45.0% |
| !! | TTACAGCTGCAAGGAGTACT+GGG | - | tig0019143:124160-124179 | Msa1370810:intron | 45.0% |
| GTAGAGAAGCAAACCTCACT+TGG | - | tig0019143:124272-124291 | Msa1370810:CDS | 45.0% | |
| CAAACCTCACTTGGGTTCAA+TGG | - | tig0019143:124281-124300 | Msa1370810:CDS | 45.0% | |
| TACACCATTGAACCCAAGTG+AGG | + | tig0019143:124288-124307 | None:intergenic | 45.0% | |
| GCTGGATAATGCATTCTCTC+TGG | + | tig0019143:124484-124503 | None:intergenic | 45.0% | |
| ATGTTCGTGTTAGGATACGC+TGG | + | tig0019143:124502-124521 | None:intergenic | 45.0% | |
| !!! | ATTATTTTGTTTTAATTTTA+CGG | - | tig0019143:120474-120493 | Msa1370810:CDS | 5.0% |
| TCAGGAATACATGCGAGCTC+AGG | - | tig0019143:120317-120336 | Msa1370810:three_prime_UTR | 50.0% | |
| CAGAAGAAGCTCCCTGTAGT+TGG | - | tig0019143:120342-120361 | Msa1370810:three_prime_UTR | 50.0% | |
| !! | CATGGGCATTGATCAGGACA+AGG | + | tig0019143:120426-120445 | None:intergenic | 50.0% |
| !! | GACGTACATGGGCATTGATC+AGG | + | tig0019143:120432-120451 | None:intergenic | 50.0% |
| !! | ATGGGTTCGGTGACGTACAT+GGG | + | tig0019143:120443-120462 | None:intergenic | 50.0% |
| GCGGATGTGTACAAGATGCA+TGG | - | tig0019143:120930-120949 | Msa1370810:intron | 50.0% | |
| TATGTGCCTGAGAATGGAGC+TGG | - | tig0019143:120987-121006 | Msa1370810:intron | 50.0% | |
| TTGGGTATGACATCTCCCAG+TGG | - | tig0019143:121509-121528 | Msa1370810:intron | 50.0% | |
| !! | TGCTTGATTTGTAGGGGCTG+CGG | - | tig0019143:121627-121646 | Msa1370810:intron | 50.0% |
| ACAGGTCGAACCTTGGTTTC+TGG | - | tig0019143:121703-121722 | Msa1370810:intron | 50.0% | |
| !! | ACCTTGGTTTCTGGCATCAG+TGG | - | tig0019143:121712-121731 | Msa1370810:intron | 50.0% |
| TCCACTGATGCCAGAAACCA+AGG | + | tig0019143:121716-121735 | None:intergenic | 50.0% | |
| TGGCATCAGTGGAAGTGAGA+TGG | - | tig0019143:121723-121742 | Msa1370810:intron | 50.0% | |
| CATCAGTGGAAGTGAGATGG+TGG | - | tig0019143:121726-121745 | Msa1370810:intron | 50.0% | |
| !! | AGTGGAAGTGAGATGGTGGA+GGG | - | tig0019143:121730-121749 | Msa1370810:intron | 50.0% |
| ! | AGCTGAAGGGTCGGTCATTT+TGG | + | tig0019143:122100-122119 | None:intergenic | 50.0% |
| AGTCACTGAAGCTGAAGGGT+CGG | + | tig0019143:122109-122128 | None:intergenic | 50.0% | |
| ! | CCGTGTTAGCTTAGAGGTAG+TGG | + | tig0019143:122281-122300 | None:intergenic | 50.0% |
| CTGGAACGACATCTTGCTTC+TGG | - | tig0019143:122402-122421 | Msa1370810:intron | 50.0% | |
| ACAAGCCCAGACTATGCACA+AGG | - | tig0019143:122694-122713 | Msa1370810:intron | 50.0% | |
| TCCCTGGCTTATTGAGCTGA+TGG | - | tig0019143:122730-122749 | Msa1370810:intron | 50.0% | |
| GCCATCAGCTCAATAAGCCA+GGG | + | tig0019143:122734-122753 | None:intergenic | 50.0% | |
| TGCCATCAGCTCAATAAGCC+AGG | + | tig0019143:122735-122754 | None:intergenic | 50.0% | |
| TGGAACTGCGCCAATTGGTT+AGG | + | tig0019143:123174-123193 | None:intergenic | 50.0% | |
| TGGCCACAAGTCAGAGAAAC+TGG | + | tig0019143:123318-123337 | None:intergenic | 50.0% | |
| TAGCTAACCTCTCGGCACAT+AGG | + | tig0019143:123426-123445 | None:intergenic | 50.0% | |
| TGTGCATCAGACCAAGAACC+AGG | - | tig0019143:123560-123579 | Msa1370810:intron | 50.0% | |
| ! | TAGGACAGGATCCTGGTTCT+TGG | + | tig0019143:123574-123593 | None:intergenic | 50.0% |
| TTGAGCTTAGGACAGGATCC+TGG | + | tig0019143:123581-123600 | None:intergenic | 50.0% | |
| CTGGGAGGAAAGACTTCAGA+TGG | - | tig0019143:124178-124197 | Msa1370810:intron | 50.0% | |
| AGAGAGGGTCAAGCAAGCAA+AGG | - | tig0019143:124208-124227 | Msa1370810:intron | 50.0% | |
| ! | TCAAGCAAGCAAAGGAGCAC+TGG | - | tig0019143:124216-124235 | Msa1370810:intron | 50.0% |
| !! | CAAGCAAGCAAAGGAGCACT+GGG | - | tig0019143:124217-124236 | Msa1370810:intron | 50.0% |
| ! | AACGCAGTGTAGAGCGTTCA+TGG | - | tig0019143:124241-124260 | Msa1370810:intron | 50.0% |
| ! | ACGCAGTGTAGAGCGTTCAT+GGG | - | tig0019143:124242-124261 | Msa1370810:intron | 50.0% |
| !! | GATGGGTTCGGTGACGTACA+TGG | + | tig0019143:120444-120463 | None:intergenic | 55.0% |
| GGCAAAGGATGCAGCAGTAG+CGG | - | tig0019143:120911-120930 | Msa1370810:intron | 55.0% | |
| CTGAGAATGGAGCTGGAGGA+GGG | - | tig0019143:120994-121013 | Msa1370810:intron | 55.0% | |
| TGAGAATGGACGTGTGGAGG+TGG | - | tig0019143:121054-121073 | Msa1370810:intron | 55.0% | |
| AATGGACGTGTGGAGGTGGT+TGG | - | tig0019143:121058-121077 | Msa1370810:intron | 55.0% | |
| AGGTGGTTGGAAGAGGCAGA+TGG | - | tig0019143:121071-121090 | Msa1370810:intron | 55.0% | |
| GGTGGTTGGAAGAGGCAGAT+GGG | - | tig0019143:121072-121091 | Msa1370810:intron | 55.0% | |
| !! | AGTAGCAGGGATTTGGTGGC+AGG | - | tig0019143:121569-121588 | Msa1370810:intron | 55.0% |
| !! | GTAGCAGGGATTTGGTGGCA+GGG | - | tig0019143:121570-121589 | Msa1370810:intron | 55.0% |
| ! | GAGCTTGCTCCCAGCCTTAA+CGG | + | tig0019143:121666-121685 | None:intergenic | 55.0% |
| ! | CAGTGGAAGTGAGATGGTGG+AGG | - | tig0019143:121729-121748 | Msa1370810:intron | 55.0% |
| TCAGCGTGCACAGAAACTGC+TGG | - | tig0019143:122383-122402 | Msa1370810:intron | 55.0% | |
| GTGCCTGAGAATGGAGCTGG+AGG | - | tig0019143:120990-121009 | Msa1370810:intron | 60.0% | |
| CCTCCTCCAGCTCCATTCTC+AGG | + | tig0019143:120996-121015 | None:intergenic | 60.0% | |
| CCTGAGAATGGAGCTGGAGG+AGG | - | tig0019143:120993-121012 | Msa1370810:intron | 60.0% | |
| CGTGTGGAGGTGGTTGGAAG+AGG | - | tig0019143:121064-121083 | Msa1370810:intron | 60.0% | |
| !! | GGGATTTGGTGGCAGGGCTT+TGG | - | tig0019143:121576-121595 | Msa1370810:intron | 60.0% |
| !! | CAGCTGCAAGGAGTACTGGG+AGG | - | tig0019143:124163-124182 | Msa1370810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019143 | gene | 120120 | 124591 | 120120 | ID=Msa1370810;Name=Msa1370810 |
| tig0019143 | mRNA | 120120 | 124591 | 120120 | ID=Msa1370810-mRNA-1;Parent=Msa1370810;Name=Msa1370810-mRNA-1;_AED=0.06;_eAED=0.06;_QI=177|1|1|1|0.8|1|6|320|316 |
| tig0019143 | exon | 120120 | 120545 | 120120 | ID=Msa1370810-mRNA-1:exon:1899;Parent=Msa1370810-mRNA-1 |
| tig0019143 | exon | 120712 | 120770 | 120712 | ID=Msa1370810-mRNA-1:exon:1898;Parent=Msa1370810-mRNA-1 |
| tig0019143 | exon | 121274 | 121411 | 121274 | ID=Msa1370810-mRNA-1:exon:1897;Parent=Msa1370810-mRNA-1 |
| tig0019143 | exon | 121798 | 122052 | 121798 | ID=Msa1370810-mRNA-1:exon:1896;Parent=Msa1370810-mRNA-1 |
| tig0019143 | exon | 122148 | 122392 | 122148 | ID=Msa1370810-mRNA-1:exon:1895;Parent=Msa1370810-mRNA-1 |
| tig0019143 | exon | 124267 | 124591 | 124267 | ID=Msa1370810-mRNA-1:exon:1894;Parent=Msa1370810-mRNA-1 |
| tig0019143 | five_prime_UTR | 124415 | 124591 | 124415 | ID=Msa1370810-mRNA-1:five_prime_utr;Parent=Msa1370810-mRNA-1 |
| tig0019143 | CDS | 124267 | 124414 | 124267 | ID=Msa1370810-mRNA-1:cds;Parent=Msa1370810-mRNA-1 |
| tig0019143 | CDS | 122148 | 122392 | 122148 | ID=Msa1370810-mRNA-1:cds;Parent=Msa1370810-mRNA-1 |
| tig0019143 | CDS | 121798 | 122052 | 121798 | ID=Msa1370810-mRNA-1:cds;Parent=Msa1370810-mRNA-1 |
| tig0019143 | CDS | 121274 | 121411 | 121274 | ID=Msa1370810-mRNA-1:cds;Parent=Msa1370810-mRNA-1 |
| tig0019143 | CDS | 120712 | 120770 | 120712 | ID=Msa1370810-mRNA-1:cds;Parent=Msa1370810-mRNA-1 |
| tig0019143 | CDS | 120440 | 120545 | 120440 | ID=Msa1370810-mRNA-1:cds;Parent=Msa1370810-mRNA-1 |
| tig0019143 | three_prime_UTR | 120120 | 120439 | 120120 | ID=Msa1370810-mRNA-1:three_prime_utr;Parent=Msa1370810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
