Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082230 | XP_003591544.1 | 92.593 | 324 | 11 | 2 | 1 | 319 | 1 | 316 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082230 | sp|Q9SRX9|BAH1_ARATH | 61.224 | 343 | 101 | 6 | 1 | 319 | 1 | 335 | 2.44e-143 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082230 | G7IF76 | 92.593 | 324 | 11 | 2 | 1 | 319 | 1 | 316 | 0.0 | 590 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0082230 | -0.816326 | 5.858986e-52 | -8.615850e-47 |
| Msa0026630 | Msa0082230 | 0.803356 | 3.625743e-49 | -8.615850e-47 |
| Msa0043850 | Msa0082230 | 0.834164 | 3.512147e-56 | -8.615850e-47 |
| Msa0072600 | Msa0082230 | -0.812170 | 4.851207e-51 | -8.615850e-47 |
| Msa0077370 | Msa0082230 | 0.869168 | 3.789213e-66 | -8.615850e-47 |
| Msa0081660 | Msa0082230 | 0.832084 | 1.156809e-55 | -8.615850e-47 |
| Msa0082230 | Msa0082420 | 0.962592 | 4.630200e-121 | -8.615850e-47 |
| Msa0082230 | Msa0086190 | 0.822353 | 2.479152e-53 | -8.615850e-47 |
| Msa0082230 | Msa0090510 | 0.834670 | 2.620990e-56 | -8.615850e-47 |
| Msa0082230 | Msa0094710 | 0.800244 | 1.578552e-48 | -8.615850e-47 |
| Msa0082230 | Msa0101960 | 0.808373 | 3.197629e-50 | -8.615850e-47 |
| Msa0082230 | Msa0127870 | 0.831838 | 1.329905e-55 | -8.615850e-47 |
| Msa0082230 | Msa0128800 | 0.801342 | 9.420630e-49 | -8.615850e-47 |
| Msa0082230 | Msa0128980 | 0.854874 | 9.202625e-62 | -8.615850e-47 |
| Msa0082230 | Msa0137980 | 0.829914 | 3.942319e-55 | -8.615850e-47 |
| Msa0082230 | Msa0174010 | 0.833026 | 6.752755e-56 | -8.615850e-47 |
| Msa0082230 | Msa0174100 | 0.821987 | 3.014523e-53 | -8.615850e-47 |
| Msa0082230 | Msa0174820 | 0.896065 | 5.275072e-76 | -8.615850e-47 |
| Msa0082230 | Msa0183910 | 0.820744 | 5.834287e-53 | -8.615850e-47 |
| Msa0082230 | Msa0220400 | -0.803687 | 3.094900e-49 | -8.615850e-47 |
| Msa0082230 | Msa0306000 | 0.800308 | 1.531924e-48 | -8.615850e-47 |
| Msa0082230 | Msa0310720 | -0.817701 | 2.876600e-52 | -8.615850e-47 |
| Msa0082230 | Msa0310730 | -0.833205 | 6.095659e-56 | -8.615850e-47 |
| Msa0082230 | Msa0374340 | -0.837225 | 5.892356e-57 | -8.615850e-47 |
| Msa0082230 | Msa0374420 | -0.834488 | 2.911024e-56 | -8.615850e-47 |
| Msa0082230 | Msa0380400 | -0.811696 | 6.152635e-51 | -8.615850e-47 |
| Msa0082230 | Msa0390550 | 0.833637 | 4.756892e-56 | -8.615850e-47 |
| Msa0082230 | Msa0403470 | -0.865246 | 6.788311e-65 | -8.615850e-47 |
| Msa0082230 | Msa0427310 | 0.811114 | 8.232704e-51 | -8.615850e-47 |
| Msa0082230 | Msa0428200 | 0.808619 | 2.833644e-50 | -8.615850e-47 |
| Msa0082230 | Msa0431900 | 0.828970 | 6.683803e-55 | -8.615850e-47 |
| Msa0082230 | Msa0469870 | -0.814634 | 1.393930e-51 | -8.615850e-47 |
| Msa0082230 | Msa0476170 | -0.814312 | 1.642691e-51 | -8.615850e-47 |
| Msa0082230 | Msa0515440 | -0.808875 | 2.498133e-50 | -8.615850e-47 |
| Msa0082230 | Msa0517990 | 0.818553 | 1.845968e-52 | -8.615850e-47 |
| Msa0082230 | Msa0520770 | 0.821842 | 3.257181e-53 | -8.615850e-47 |
| Msa0082230 | Msa0528990 | 0.812066 | 5.112105e-51 | -8.615850e-47 |
| Msa0082230 | Msa0529000 | 0.868918 | 4.568792e-66 | -8.615850e-47 |
| Msa0082230 | Msa0545050 | 0.835010 | 2.151867e-56 | -8.615850e-47 |
| Msa0082230 | Msa0548650 | -0.835509 | 1.610403e-56 | -8.615850e-47 |
| Msa0082230 | Msa0574930 | 0.823621 | 1.255349e-53 | -8.615850e-47 |
| Msa0082230 | Msa0588590 | 0.815129 | 1.082655e-51 | -8.615850e-47 |
| Msa0082230 | Msa0600590 | 0.846844 | 1.682834e-59 | -8.615850e-47 |
| Msa0082230 | Msa0603690 | -0.829268 | 5.660788e-55 | -8.615850e-47 |
| Msa0082230 | Msa0637930 | -0.801858 | 7.382243e-49 | -8.615850e-47 |
| Msa0082230 | Msa0641130 | 0.845253 | 4.558650e-59 | -8.615850e-47 |
| Msa0082230 | Msa0698450 | 0.800364 | 1.492204e-48 | -8.615850e-47 |
| Msa0082230 | Msa0708600 | 0.814961 | 1.180216e-51 | -8.615850e-47 |
| Msa0082230 | Msa0744640 | 0.804305 | 2.302727e-49 | -8.615850e-47 |
| Msa0082230 | Msa0810440 | 0.817536 | 3.134719e-52 | -8.615850e-47 |
| Msa0082230 | Msa0817710 | 0.811226 | 7.782261e-51 | -8.615850e-47 |
| Msa0082230 | Msa0823540 | 0.800222 | 1.594437e-48 | -8.615850e-47 |
| Msa0082230 | Msa0841730 | 0.804944 | 1.693881e-49 | -8.615850e-47 |
| Msa0082230 | Msa0862620 | 0.803267 | 3.783024e-49 | -8.615850e-47 |
| Msa0082230 | Msa0864820 | -0.817830 | 2.690846e-52 | -8.615850e-47 |
| Msa0082230 | Msa0875080 | 0.825053 | 5.781407e-54 | -8.615850e-47 |
| Msa0082230 | Msa0881530 | -0.816064 | 6.704631e-52 | -8.615850e-47 |
| Msa0082230 | Msa0907430 | 0.826801 | 2.222446e-54 | -8.615850e-47 |
| Msa0082230 | Msa0940340 | 0.829183 | 5.937357e-55 | -8.615850e-47 |
| Msa0082230 | Msa0968470 | -0.836917 | 7.065614e-57 | -8.615850e-47 |
| Msa0082230 | Msa0982090 | -0.839730 | 1.330151e-57 | -8.615850e-47 |
| Msa0082230 | Msa1011250 | 0.803239 | 3.833358e-49 | -8.615850e-47 |
| Msa0082230 | Msa1016960 | 0.816648 | 4.961592e-52 | -8.615850e-47 |
| Msa0082230 | Msa1022030 | 0.800267 | 1.561873e-48 | -8.615850e-47 |
| Msa0082230 | Msa1023310 | 0.803183 | 3.936886e-49 | -8.615850e-47 |
| Msa0082230 | Msa1031460 | 0.860243 | 2.365276e-63 | -8.615850e-47 |
| Msa0082230 | Msa1058200 | 0.809550 | 1.790612e-50 | -8.615850e-47 |
| Msa0082230 | Msa1062040 | 0.838265 | 3.185878e-57 | -8.615850e-47 |
| Msa0082230 | Msa1070540 | 0.869336 | 3.341727e-66 | -8.615850e-47 |
| Msa0082230 | Msa1079720 | -0.827706 | 1.348847e-54 | -8.615850e-47 |
| Msa0082230 | Msa1101220 | 0.818430 | 1.968515e-52 | -8.615850e-47 |
| Msa0082230 | Msa1101240 | 0.868720 | 5.294700e-66 | -8.615850e-47 |
| Msa0082230 | Msa1107200 | 0.831538 | 1.577022e-55 | -8.615850e-47 |
| Msa0082230 | Msa1122150 | 0.808401 | 3.153359e-50 | -8.615850e-47 |
| Msa0082230 | Msa1124530 | -0.850447 | 1.688147e-60 | -8.615850e-47 |
| Msa0082230 | Msa1140630 | 0.812449 | 4.215630e-51 | -8.615850e-47 |
| Msa0082230 | Msa1150780 | 0.827981 | 1.158434e-54 | -8.615850e-47 |
| Msa0082230 | Msa1158370 | 0.825596 | 4.301345e-54 | -8.615850e-47 |
| Msa0082230 | Msa1160560 | 0.815958 | 7.079369e-52 | -8.615850e-47 |
| Msa0082230 | Msa1167150 | -0.803853 | 2.858428e-49 | -8.615850e-47 |
| Msa0082230 | Msa1168640 | 0.843196 | 1.625565e-58 | -8.615850e-47 |
| Msa0082230 | Msa1183140 | 0.812545 | 4.016346e-51 | -8.615850e-47 |
| Msa0082230 | Msa1190100 | -0.800857 | 1.183671e-48 | -8.615850e-47 |
| Msa0082230 | Msa1208450 | -0.842754 | 2.131267e-58 | -8.615850e-47 |
| Msa0082230 | Msa1208990 | 0.806185 | 9.301593e-50 | -8.615850e-47 |
| Msa0082230 | Msa1272010 | 0.808135 | 3.592951e-50 | -8.615850e-47 |
| Msa0082230 | Msa1298390 | -0.834826 | 2.394259e-56 | -8.615850e-47 |
| Msa0082230 | Msa1309760 | 0.805949 | 1.042441e-49 | -8.615850e-47 |
| Msa0082230 | Msa1364350 | -0.810279 | 1.247299e-50 | -8.615850e-47 |
| Msa0082230 | Msa1368610 | 0.827130 | 1.854076e-54 | -8.615850e-47 |
| Msa0082230 | Msa1369920 | -0.803473 | 3.428108e-49 | -8.615850e-47 |
| Msa0082230 | Msa1370810 | 0.918398 | 1.636641e-86 | -8.615850e-47 |
| Msa0082230 | Msa1375610 | -0.813802 | 2.128603e-51 | -8.615850e-47 |
| Msa0082230 | Msa1376550 | -0.816985 | 4.170446e-52 | -8.615850e-47 |
| Msa0082230 | Msa1379020 | 0.807347 | 5.284709e-50 | -8.615850e-47 |
| Msa0082230 | Msa1382380 | -0.839441 | 1.582027e-57 | -8.615850e-47 |
| Msa0082230 | Msa1389640 | 0.814221 | 1.720915e-51 | -8.615850e-47 |
| Msa0082230 | Msa1407880 | 0.823345 | 1.456363e-53 | -8.615850e-47 |
| Msa0082230 | Msa1419840 | 0.831701 | 1.437671e-55 | -8.615850e-47 |
| Msa0082230 | Msa1465860 | 0.810371 | 1.191570e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082230 | MtrunA17_Chr1g0195671 | 92.593 | 324 | 11 | 2 | 1 | 319 | 1 | 316 | 0.0 | 590 |
| Msa0082230 | MtrunA17_Chr7g0269281 | 77.778 | 324 | 59 | 2 | 1 | 319 | 1 | 316 | 1.98e-178 | 495 |
| Msa0082230 | MtrunA17_Chr7g0268131 | 39.169 | 337 | 177 | 6 | 1 | 319 | 1 | 327 | 1.08e-77 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082230 | AT1G02860.1 | 61.224 | 343 | 101 | 6 | 1 | 319 | 1 | 335 | 2.48e-144 | 410 |
| Msa0082230 | AT1G02860.2 | 60.641 | 343 | 101 | 7 | 1 | 319 | 1 | 333 | 8.32e-141 | 401 |
| Msa0082230 | AT1G02860.3 | 57.202 | 243 | 72 | 6 | 1 | 219 | 1 | 235 | 3.66e-82 | 249 |
| Msa0082230 | AT2G38920.5 | 44.444 | 261 | 139 | 2 | 63 | 318 | 75 | 334 | 1.22e-70 | 223 |
| Msa0082230 | AT2G38920.1 | 44.444 | 261 | 139 | 2 | 63 | 318 | 75 | 334 | 1.22e-70 | 223 |
| Msa0082230 | AT2G38920.6 | 44.444 | 261 | 139 | 2 | 63 | 318 | 75 | 334 | 1.22e-70 | 223 |
| Msa0082230 | AT2G38920.2 | 44.828 | 261 | 137 | 3 | 63 | 318 | 75 | 333 | 9.14e-70 | 220 |
| Msa0082230 | AT2G38920.4 | 36.420 | 162 | 97 | 2 | 63 | 219 | 75 | 235 | 1.58e-26 | 105 |
| Msa0082230 | AT2G38920.3 | 33.987 | 153 | 95 | 2 | 63 | 210 | 75 | 226 | 4.51e-21 | 90.5 |
Find 90 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGCTGTCTCACATTTA+AGG | 0.203509 | 1_2:-61029561 | Msa0082230:CDS |
| GCCTTTACTTTGATCGATTC+TGG | 0.234863 | 1_2:+61027990 | None:intergenic |
| CTCTGTGAAGGCAGTGTATA+AGG | 0.282855 | 1_2:-61031274 | Msa0082230:intron |
| AGGAAGAAAGGATGGGGTTT+GGG | 0.288964 | 1_2:+61032200 | None:intergenic |
| CTGGAACGACATCTTGCTTC+TGG | 0.289645 | 1_2:-61029973 | Msa0082230:CDS |
| TGGCATTACATATCAATCTA+AGG | 0.297202 | 1_2:-61029625 | Msa0082230:CDS |
| CATTGAGAAGGGAAGGAAAA+AGG | 0.328588 | 1_2:+61030043 | None:intergenic |
| GAATTTCCTTGTGCATAGTC+TGG | 0.333742 | 1_2:+61029675 | None:intergenic |
| TTCCTTGCTATGTTCGTGTT+AGG | 0.348168 | 1_2:+61027868 | None:intergenic |
| AAGGAAGAAAGGATGGGGTT+TGG | 0.354555 | 1_2:+61032199 | None:intergenic |
| TACTATTGTTGATGGGCTTA+AGG | 0.357492 | 1_2:-61028998 | Msa0082230:CDS |
| CAATGAAATGTCAGAAATAG+TGG | 0.363110 | 1_2:-61030025 | Msa0082230:CDS |
| TGGCCACAAGTCAGAGAAAC+TGG | 0.385626 | 1_2:+61029060 | None:intergenic |
| TTTACAGCTGCAAGGAGTAC+TGG | 0.387587 | 1_2:-61028217 | Msa0082230:intron |
| TCAACATGAGAATGTACTTT+CGG | 0.395088 | 1_2:+61029947 | None:intergenic |
| AGGCAGTGTATAAGGAGATA+TGG | 0.397511 | 1_2:-61031266 | Msa0082230:intron |
| GCATCTGTTACTATTGTTGA+TGG | 0.400772 | 1_2:-61029006 | Msa0082230:CDS |
| TCTGACTTGCTCTATATGTT+TGG | 0.403804 | 1_2:-61029483 | Msa0082230:intron |
| TGTTGAAAGGAAAATCAAAA+AGG | 0.412750 | 1_2:-61029930 | Msa0082230:CDS |
| AACGCAGTGTAGAGCGTTCA+TGG | 0.417759 | 1_2:-61028135 | Msa0082230:CDS |
| ACTTTGGCATCTGTACCTTA+AGG | 0.417794 | 1_2:-61027962 | Msa0082230:three_prime_UTR |
| GAAGTTCTGCAAGACCTATC+AGG | 0.420448 | 1_2:-61032076 | Msa0082230:CDS |
| TTTGAGATAGATATGATAAC+GGG | 0.422854 | 1_2:-61032239 | Msa0082230:five_prime_UTR |
| CAAACCTCACTTGGGTTCAA+TGG | 0.439730 | 1_2:-61028095 | Msa0082230:three_prime_UTR |
| GACGTACATGGGCATTGATC+AGG | 0.450499 | 1_2:+61031946 | None:intergenic |
| AGCTTCTTGAATCCAACTAC+AGG | 0.454546 | 1_2:+61032021 | None:intergenic |
| TCAAGCAAGCAAAGGAGCAC+TGG | 0.456757 | 1_2:-61028160 | Msa0082230:CDS |
| CAGAAGAAGCTCCCTGTAGT+TGG | 0.458661 | 1_2:-61032033 | Msa0082230:CDS |
| CATCTGTTACTATTGTTGAT+GGG | 0.462476 | 1_2:-61029005 | Msa0082230:CDS |
| AGGAAATTCTTCAGAGTCCC+TGG | 0.466281 | 1_2:-61029661 | Msa0082230:CDS |
| ACCAGAATCGATCAAAGTAA+AGG | 0.467205 | 1_2:-61027991 | Msa0082230:three_prime_UTR |
| TATGAACAAGGAAGAAAGGA+TGG | 0.472140 | 1_2:+61032192 | None:intergenic |
| TGCCATCAGCTCAATAAGCC+AGG | 0.477293 | 1_2:+61029643 | None:intergenic |
| GGCAGTGTATAAGGAGATAT+GGG | 0.477973 | 1_2:-61031265 | Msa0082230:intron |
| TTATGAAGGTGCTGTACACT+TGG | 0.484901 | 1_2:-61028427 | Msa0082230:CDS |
| GACATTTCATTGAGAAGGGA+AGG | 0.485733 | 1_2:+61030036 | None:intergenic |
| GATCCAGTTTCTCTGACTTG+TGG | 0.486686 | 1_2:-61029063 | Msa0082230:CDS |
| TTTCTGACATTTCATTGAGA+AGG | 0.491436 | 1_2:+61030031 | None:intergenic |
| CTCAAATCCTCCTTGCTCTA+CGG | 0.491837 | 1_2:+61032256 | None:intergenic |
| ATTGATCAGGACAAGGTTTG+TGG | 0.494079 | 1_2:+61031959 | None:intergenic |
| AATTTCCTTGTGCATAGTCT+GGG | 0.496401 | 1_2:+61029676 | None:intergenic |
| GCTGGATAATGCATTCTCTC+TGG | 0.501749 | 1_2:+61027895 | None:intergenic |
| ATTTGAGATAGATATGATAA+CGG | 0.508006 | 1_2:-61032240 | Msa0082230:five_prime_UTR |
| GTAGAGAAGCAAACCTCACT+TGG | 0.508655 | 1_2:-61028104 | Msa0082230:three_prime_UTR |
| CATACTACTTTAATTCATGA+AGG | 0.511669 | 1_2:-61029904 | Msa0082230:CDS |
| ATAATATGAACAAGGAAGAA+AGG | 0.514625 | 1_2:+61032188 | None:intergenic |
| TGACAGGCAGGAGTTTATGA+AGG | 0.519168 | 1_2:-61028441 | Msa0082230:intron |
| TCAGGAATACATGCGAGCTC+AGG | 0.526255 | 1_2:-61032058 | Msa0082230:CDS |
| AATACTAAAGAAATACGATA+AGG | 0.526973 | 1_2:-61029833 | Msa0082230:intron |
| TTCTGACATTTCATTGAGAA+GGG | 0.527417 | 1_2:+61030032 | None:intergenic |
| TTACAGCTGCAAGGAGTACT+GGG | 0.534094 | 1_2:-61028216 | Msa0082230:intron |
| GGCATTACATATCAATCTAA+GGG | 0.535814 | 1_2:-61029624 | Msa0082230:CDS |
| AAGGCAACCACATTATTCAA+TGG | 0.537425 | 1_2:-61029581 | Msa0082230:CDS |
| TCCCTGGCTTATTGAGCTGA+TGG | 0.545974 | 1_2:-61029645 | Msa0082230:CDS |
| CTGGGAGGAAAGACTTCAGA+TGG | 0.554408 | 1_2:-61028198 | Msa0082230:CDS |
| TCAGCGTGCACAGAAACTGC+TGG | 0.555825 | 1_2:-61029992 | Msa0082230:CDS |
| CACAACTGTAGCAGAATATG+TGG | 0.556209 | 1_2:+61029040 | None:intergenic |
| ATGAACAAGGAAGAAAGGAT+GGG | 0.560709 | 1_2:+61032193 | None:intergenic |
| AGCTCGCATGTATTCCTGAT+AGG | 0.561249 | 1_2:+61032062 | None:intergenic |
| CAAGCAAGCAAAGGAGCACT+GGG | 0.568388 | 1_2:-61028159 | Msa0082230:CDS |
| TCAATATGTTTACAGCTGCA+AGG | 0.570008 | 1_2:-61028225 | Msa0082230:intron |
| TGCTGTCTCACATTTAAGGA+TGG | 0.573316 | 1_2:-61029557 | Msa0082230:CDS |
| TCAGATGGAAAGAGTAGAGA+GGG | 0.577968 | 1_2:-61028183 | Msa0082230:CDS |
| AAGTACATTCTCATGTTGAA+AGG | 0.578077 | 1_2:-61029943 | Msa0082230:CDS |
| GGGAAACTAAAGACAAGTCA+AGG | 0.583655 | 1_2:-61029604 | Msa0082230:CDS |
| TGAACAAGGAAGAAAGGATG+GGG | 0.584638 | 1_2:+61032194 | None:intergenic |
| AATGAAATGTCAGAAATAGT+GGG | 0.585835 | 1_2:-61030024 | Msa0082230:CDS |
| TAACATGTTTCCGTAGAGCA+AGG | 0.586503 | 1_2:-61032266 | None:intergenic |
| ACGCAGTGTAGAGCGTTCAT+GGG | 0.593633 | 1_2:-61028134 | Msa0082230:CDS |
| GCCATCAGCTCAATAAGCCA+GGG | 0.598446 | 1_2:+61029644 | None:intergenic |
| ATCCTAACACGAACATAGCA+AGG | 0.601512 | 1_2:-61027870 | Msa0082230:three_prime_UTR |
| CATGGGCATTGATCAGGACA+AGG | 0.604815 | 1_2:+61031952 | None:intergenic |
| AGAGAGGGTCAAGCAAGCAA+AGG | 0.606390 | 1_2:-61028168 | Msa0082230:CDS |
| TAGCTAACCTCTCGGCACAT+AGG | 0.606824 | 1_2:+61028952 | None:intergenic |
| AAGAGCTCACAAGCAAGTGA+TGG | 0.610123 | 1_2:+61029530 | None:intergenic |
| AACTAAAGACAAGTCAAGGA+AGG | 0.614374 | 1_2:-61029600 | Msa0082230:CDS |
| ATGTTCGTGTTAGGATACGC+TGG | 0.627501 | 1_2:+61027877 | None:intergenic |
| AGAGAAAGAGAAACAGCGCA+CGG | 0.627878 | 1_2:+61032159 | None:intergenic |
| TACACCATTGAACCCAAGTG+AGG | 0.633884 | 1_2:+61028091 | None:intergenic |
| TAGAGAAGCAAACCTCACTT+GGG | 0.636136 | 1_2:-61028103 | Msa0082230:three_prime_UTR |
| TTCAGATGGAAAGAGTAGAG+AGG | 0.639549 | 1_2:-61028184 | Msa0082230:CDS |
| GCTTCTTGAATCCAACTACA+GGG | 0.643810 | 1_2:+61032022 | None:intergenic |
| CATGTTTCCGTAGAGCAAGG+AGG | 0.677715 | 1_2:-61032263 | None:intergenic |
| GGAAGTGAATAATATGAACA+AGG | 0.680477 | 1_2:+61032180 | None:intergenic |
| ATAAGGAGATATGGGCCAAG+AGG | 0.684653 | 1_2:-61031257 | Msa0082230:intron |
| TTGAGATAGATATGATAACG+GGG | 0.686299 | 1_2:-61032238 | Msa0082230:five_prime_UTR |
| ACAAGCCCAGACTATGCACA+AGG | 0.690000 | 1_2:-61029681 | Msa0082230:CDS |
| ACAGCATCCATTGAATAATG+TGG | 0.696194 | 1_2:+61029574 | None:intergenic |
| AAAATGTCCTATGTGCCGAG+AGG | 0.727589 | 1_2:-61028959 | Msa0082230:intron |
| CAGCTGCAAGGAGTACTGGG+AGG | 0.743316 | 1_2:-61028213 | Msa0082230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTTCATTAATAATAATA+AGG | + | chr1_2:61031571-61031590 | None:intergenic | 10.0% |
| !! | AAATAATTAATCGAAATGAT+GGG | + | chr1_2:61028148-61028167 | None:intergenic | 15.0% |
| !! | AAAATAATTAATCGAAATGA+TGG | + | chr1_2:61028149-61028168 | None:intergenic | 15.0% |
| !! | TCAAACATTTGAAAATAATT+GGG | + | chr1_2:61028214-61028233 | None:intergenic | 15.0% |
| !! | TTCAAACATTTGAAAATAAT+TGG | + | chr1_2:61028215-61028234 | None:intergenic | 15.0% |
| !!! | ATTAACTATTATCAATTTTG+TGG | - | chr1_2:61028523-61028542 | Msa0082230:intron | 15.0% |
| !!! | TTAACTATTATCAATTTTGT+GGG | - | chr1_2:61028524-61028543 | Msa0082230:intron | 15.0% |
| !!! | TGAGTAAATATAATTTTTTG+TGG | + | chr1_2:61030755-61030774 | None:intergenic | 15.0% |
| !!! | TTCAATTGATAATTTTAATC+TGG | - | chr1_2:61030950-61030969 | Msa0082230:intron | 15.0% |
| !!! | TAATTCAATTCATTTGTTAA+TGG | + | chr1_2:61031706-61031725 | None:intergenic | 15.0% |
| !! | ATTGAATTAAAATAAAGAGA+TGG | - | chr1_2:61031717-61031736 | Msa0082230:intron | 15.0% |
| !! | GTAAACATATTGAAATTATA+AGG | + | chr1_2:61031830-61031849 | None:intergenic | 15.0% |
| !!! | ATTTGAGATAGATATGATAA+CGG | - | chr1_2:61027822-61027841 | Msa0082230:three_prime_UTR | 20.0% |
| !! | GATGAATAAAAATTGAATGA+AGG | + | chr1_2:61028283-61028302 | None:intergenic | 20.0% |
| !! | AAATTCATGAACTAAATTGA+TGG | + | chr1_2:61028389-61028408 | None:intergenic | 20.0% |
| !! | TAGGAGTTTGATTAATATTA+AGG | + | chr1_2:61028415-61028434 | None:intergenic | 20.0% |
| !! | TTAATATTGAGAGTTCATTT+AGG | + | chr1_2:61028434-61028453 | None:intergenic | 20.0% |
| !!! | TAACTATTATCAATTTTGTG+GGG | - | chr1_2:61028525-61028544 | Msa0082230:intron | 20.0% |
| !! | ATAATAAAATGATGAAGTGT+TGG | + | chr1_2:61028841-61028860 | None:intergenic | 20.0% |
| !! | ATATAATTATGGTGTGAAAT+TGG | - | chr1_2:61029152-61029171 | Msa0082230:intron | 20.0% |
| !!! | GATATTTCAATTGTATTGAT+TGG | - | chr1_2:61029607-61029626 | Msa0082230:CDS | 20.0% |
| !! | TATAAGAATTAAGAGTTTGT+AGG | - | chr1_2:61029843-61029862 | Msa0082230:CDS | 20.0% |
| !!! | TATAATGATGTCATTTTCTT+TGG | - | chr1_2:61029896-61029915 | Msa0082230:CDS | 20.0% |
| !!! | ATAATGATGTCATTTTCTTT+GGG | - | chr1_2:61029897-61029916 | Msa0082230:CDS | 20.0% |
| !! | AATACTAAAGAAATACGATA+AGG | - | chr1_2:61030229-61030248 | Msa0082230:intron | 20.0% |
| !! | AAAAGAAAAGAAAAAAGTGA+AGG | + | chr1_2:61030930-61030949 | None:intergenic | 20.0% |
| !! | AAAAGTTATTGATGTAAGAA+TGG | + | chr1_2:61031169-61031188 | None:intergenic | 20.0% |
| !! | TTTCAATGGTAAAAATTAAC+AGG | + | chr1_2:61031346-61031365 | None:intergenic | 20.0% |
| !!! | GTCTTTATTTATAGTGAAAA+AGG | + | chr1_2:61031516-61031535 | None:intergenic | 20.0% |
| !!! | TTTTCACTATAAATAAAGAC+TGG | - | chr1_2:61031516-61031535 | Msa0082230:intron | 20.0% |
| !! | TTTCACTATAAATAAAGACT+GGG | - | chr1_2:61031517-61031536 | Msa0082230:intron | 20.0% |
| !!! | AATTTTATACTGTTTATGAC+AGG | - | chr1_2:61031605-61031624 | Msa0082230:intron | 20.0% |
| !!! | GAAGAATTGAATATTTTGTT+AGG | - | chr1_2:61031657-61031676 | Msa0082230:intron | 20.0% |
| !!! | TGAATATTTTGTTAGGAAAA+AGG | - | chr1_2:61031664-61031683 | Msa0082230:intron | 20.0% |
| !! | TTTGAGATAGATATGATAAC+GGG | - | chr1_2:61027823-61027842 | Msa0082230:three_prime_UTR | 25.0% |
| ! | ATAATATGAACAAGGAAGAA+AGG | + | chr1_2:61027877-61027896 | None:intergenic | 25.0% |
| !!! | CTCTCATTAGTCATTTTTAT+TGG | - | chr1_2:61028302-61028321 | Msa0082230:intron | 25.0% |
| !! | CTCAAATTACTCCTTTTAAT+CGG | - | chr1_2:61028466-61028485 | Msa0082230:intron | 25.0% |
| ! | TAGTTAATTATATGTCCTTC+AGG | + | chr1_2:61028511-61028530 | None:intergenic | 25.0% |
| ! | CTTGTTTAAGAATATGAGAA+TGG | - | chr1_2:61028726-61028745 | Msa0082230:intron | 25.0% |
| !! | CATTTTATTATTCTTTGCTC+AGG | - | chr1_2:61028850-61028869 | Msa0082230:intron | 25.0% |
| ! | TGGTGGAAAACATATAATTA+TGG | - | chr1_2:61029141-61029160 | Msa0082230:intron | 25.0% |
| ! | ATAGGTAATGCTTAATGAAA+AGG | - | chr1_2:61029506-61029525 | Msa0082230:CDS | 25.0% |
| ! | TAGGTAATGCTTAATGAAAA+GGG | - | chr1_2:61029507-61029526 | Msa0082230:CDS | 25.0% |
| !!! | AGAATTGTTTTTGAAGGAAT+TGG | - | chr1_2:61029556-61029575 | Msa0082230:CDS | 25.0% |
| !!! | GAATTGTTTTTGAAGGAATT+GGG | - | chr1_2:61029557-61029576 | Msa0082230:CDS | 25.0% |
| !!! | TTCAATTGTATTGATTGGAT+TGG | - | chr1_2:61029612-61029631 | Msa0082230:CDS | 25.0% |
| ! | TTCTTATAATAGACTACAAG+CGG | + | chr1_2:61029831-61029850 | None:intergenic | 25.0% |
| ! | AATGAAATGTCAGAAATAGT+GGG | - | chr1_2:61030038-61030057 | Msa0082230:CDS | 25.0% |
| ! | TGTTGAAAGGAAAATCAAAA+AGG | - | chr1_2:61030132-61030151 | Msa0082230:intron | 25.0% |
| ! | CATACTACTTTAATTCATGA+AGG | - | chr1_2:61030158-61030177 | Msa0082230:intron | 25.0% |
| !! | TTTCTTTTGCATGCTAATTT+TGG | - | chr1_2:61030270-61030289 | Msa0082230:intron | 25.0% |
| ! | AGATTCATTATTCTAAGCAA+GGG | - | chr1_2:61030344-61030363 | Msa0082230:intron | 25.0% |
| !! | CAGATCAATATCAATTTTGA+TGG | + | chr1_2:61030563-61030582 | None:intergenic | 25.0% |
| ! | TTGTATTGAAATTGTAAACC+AGG | - | chr1_2:61030714-61030733 | Msa0082230:intron | 25.0% |
| ! | ATAGTTTCAAATATGTGACA+TGG | - | chr1_2:61030791-61030810 | Msa0082230:intron | 25.0% |
| ! | GGAAAATATTGAACAACATA+AGG | + | chr1_2:61030840-61030859 | None:intergenic | 25.0% |
| !! | TCAATATTTTCCTAACCAAT+TGG | - | chr1_2:61030848-61030867 | Msa0082230:intron | 25.0% |
| !! | AAGAAGATCTAAAGTTTCAA+TGG | + | chr1_2:61031360-61031379 | None:intergenic | 25.0% |
| !!! | CAGAACTGTTTACTTATTTT+AGG | - | chr1_2:61031454-61031473 | Msa0082230:intron | 25.0% |
| ! | TTCACTATAAATAAAGACTG+GGG | - | chr1_2:61031518-61031537 | Msa0082230:intron | 25.0% |
| ! | AATATAACACCACAATTAAG+AGG | + | chr1_2:61031774-61031793 | None:intergenic | 25.0% |
| ! | AATTATAAGGTTAAGACACT+TGG | + | chr1_2:61031817-61031836 | None:intergenic | 25.0% |
| !! | AAAGTAAAGGCTTTTTACTT+TGG | - | chr1_2:61032084-61032103 | Msa0082230:exon | 25.0% |
| ! | ATACACTAGCCAAAAATAAA+TGG | + | chr1_2:61032126-61032145 | None:intergenic | 25.0% |
| ! | TTGAGATAGATATGATAACG+GGG | - | chr1_2:61027824-61027843 | Msa0082230:three_prime_UTR | 30.0% |
| GGAAGTGAATAATATGAACA+AGG | + | chr1_2:61027885-61027904 | None:intergenic | 30.0% | |
| TAAAAACATCAGAGAGAAAG+AGG | + | chr1_2:61027957-61027976 | None:intergenic | 30.0% | |
| !! | ATTAATCGAAATGATGGGTT+CGG | + | chr1_2:61028143-61028162 | None:intergenic | 30.0% |
| ATATATTCACGATCCAATTC+AGG | - | chr1_2:61028255-61028274 | Msa0082230:intron | 30.0% | |
| AAGACTAATGTCCGATTAAA+AGG | + | chr1_2:61028480-61028499 | None:intergenic | 30.0% | |
| ! | TAGTCTTAAATTTGTCCTGA+AGG | - | chr1_2:61028493-61028512 | Msa0082230:intron | 30.0% |
| ! | TATTATCAATTTTGTGGGGA+GGG | - | chr1_2:61028529-61028548 | Msa0082230:intron | 30.0% |
| ACATATTAAACTGCTCACTA+AGG | + | chr1_2:61028561-61028580 | None:intergenic | 30.0% | |
| TATGTTATTCACTAGTACTG+TGG | - | chr1_2:61028576-61028595 | Msa0082230:intron | 30.0% | |
| TTTATTATTCTTTGCTCAGG+AGG | - | chr1_2:61028853-61028872 | Msa0082230:intron | 30.0% | |
| !!! | TGTCGATGGTTGTTTTAAAA+TGG | - | chr1_2:61028935-61028954 | Msa0082230:intron | 30.0% |
| !!! | ATGGTTGTTTTAAAATGGCT+GGG | - | chr1_2:61028940-61028959 | Msa0082230:intron | 30.0% |
| ! | TAATTTTGTATGCTTGTGTG+TGG | - | chr1_2:61029058-61029077 | Msa0082230:CDS | 30.0% |
| TGTGGAAAATTTGCAAAGTA+AGG | - | chr1_2:61029076-61029095 | Msa0082230:CDS | 30.0% | |
| AAAATTTGCAAAGTAAGGCA+TGG | - | chr1_2:61029081-61029100 | Msa0082230:intron | 30.0% | |
| TTGGTTAGATGGTAAGATTA+AGG | - | chr1_2:61029171-61029190 | Msa0082230:intron | 30.0% | |
| TGGTTAGATGGTAAGATTAA+GGG | - | chr1_2:61029172-61029191 | Msa0082230:intron | 30.0% | |
| ATGGTAAGATTAAGGGATTT+GGG | - | chr1_2:61029179-61029198 | Msa0082230:intron | 30.0% | |
| TACTGGTATGCTTGATTTAT+AGG | - | chr1_2:61029307-61029326 | Msa0082230:intron | 30.0% | |
| ACTGGTATGCTTGATTTATA+GGG | - | chr1_2:61029308-61029327 | Msa0082230:intron | 30.0% | |
| !! | ATTGGTTTGATAAACATGCA+TGG | - | chr1_2:61029459-61029478 | Msa0082230:intron | 30.0% |
| ATCAGAACTTCAGAAGAAAA+TGG | - | chr1_2:61029482-61029501 | Msa0082230:intron | 30.0% | |
| ACTTCAGAAGAAAATGGTAT+AGG | - | chr1_2:61029488-61029507 | Msa0082230:CDS | 30.0% | |
| !!! | AGCAGAAGAATTGTTTTTGA+AGG | - | chr1_2:61029550-61029569 | Msa0082230:CDS | 30.0% |
| !! | ACTGTTAAGTGCTATTTAGA+CGG | - | chr1_2:61029584-61029603 | Msa0082230:CDS | 30.0% |
| !! | ATTGTAGAATTTGTTGCACA+AGG | - | chr1_2:61029668-61029687 | Msa0082230:CDS | 30.0% |
| ACTTCACTAATTAACTCTGA+TGG | + | chr1_2:61029708-61029727 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTGGGTACAGATT+GGG | - | chr1_2:61029908-61029927 | Msa0082230:CDS | 30.0% |
| !! | TTATTTTATTCAGTGTGCGA+TGG | - | chr1_2:61029994-61030013 | Msa0082230:CDS | 30.0% |
| ! | TATTTTATTCAGTGTGCGAT+GGG | - | chr1_2:61029995-61030014 | Msa0082230:CDS | 30.0% |
| TTCTGACATTTCATTGAGAA+GGG | + | chr1_2:61030033-61030052 | None:intergenic | 30.0% | |
| TTTCTGACATTTCATTGAGA+AGG | + | chr1_2:61030034-61030053 | None:intergenic | 30.0% | |
| CAATGAAATGTCAGAAATAG+TGG | - | chr1_2:61030037-61030056 | Msa0082230:CDS | 30.0% | |
| TCAACATGAGAATGTACTTT+CGG | + | chr1_2:61030118-61030137 | None:intergenic | 30.0% | |
| AAGTACATTCTCATGTTGAA+AGG | - | chr1_2:61030119-61030138 | Msa0082230:intron | 30.0% | |
| CAGATTCATTATTCTAAGCA+AGG | - | chr1_2:61030343-61030362 | Msa0082230:intron | 30.0% | |
| TGGCATTACATATCAATCTA+AGG | - | chr1_2:61030437-61030456 | Msa0082230:intron | 30.0% | |
| GGCATTACATATCAATCTAA+GGG | - | chr1_2:61030438-61030457 | Msa0082230:intron | 30.0% | |
| ! | TTTTGTGGAACCATAAAACT+AGG | + | chr1_2:61030740-61030759 | None:intergenic | 30.0% |
| ! | AGAAAAGTATACCGATAATG+TGG | + | chr1_2:61030881-61030900 | None:intergenic | 30.0% |
| CATCTGTTACTATTGTTGAT+GGG | - | chr1_2:61031057-61031076 | Msa0082230:intron | 30.0% | |
| AAATTAACAGGCCTTAACAA+AGG | + | chr1_2:61031334-61031353 | None:intergenic | 30.0% | |
| GAAGCTAAACAATTACAGAA+GGG | + | chr1_2:61031398-61031417 | None:intergenic | 30.0% | |
| AGAAGCTAAACAATTACAGA+AGG | + | chr1_2:61031399-61031418 | None:intergenic | 30.0% | |
| ! | TTCTGTAATTGTTTAGCTTC+TGG | - | chr1_2:61031398-61031417 | Msa0082230:intron | 30.0% |
| GCTGAATAAGTATAATTGAG+CGG | - | chr1_2:61031486-61031505 | Msa0082230:intron | 30.0% | |
| ! | CATTTTCACAAGATTGTTGA+AGG | - | chr1_2:61032039-61032058 | Msa0082230:CDS | 30.0% |
| !! | ACCTTAAGGCCATTTATTTT+TGG | - | chr1_2:61032114-61032133 | Msa0082230:five_prime_UTR | 30.0% |
| ATGAACAAGGAAGAAAGGAT+GGG | + | chr1_2:61027872-61027891 | None:intergenic | 35.0% | |
| TATGAACAAGGAAGAAAGGA+TGG | + | chr1_2:61027873-61027892 | None:intergenic | 35.0% | |
| TTGAATGAAGGAACCTGAAT+TGG | + | chr1_2:61028271-61028290 | None:intergenic | 35.0% | |
| TTTGACACGTGATTCATGAT+TGG | - | chr1_2:61028331-61028350 | Msa0082230:intron | 35.0% | |
| ! | CTATTATCAATTTTGTGGGG+AGG | - | chr1_2:61028528-61028547 | Msa0082230:intron | 35.0% |
| ! | ATTATCAATTTTGTGGGGAG+GGG | - | chr1_2:61028530-61028549 | Msa0082230:intron | 35.0% |
| ! | GTTGGTAAATGATAACCTCT+TGG | + | chr1_2:61028823-61028842 | None:intergenic | 35.0% |
| TTGAGTACTCGAAATTGTCA+AGG | - | chr1_2:61028911-61028930 | Msa0082230:intron | 35.0% | |
| TGAGTACTCGAAATTGTCAA+GGG | - | chr1_2:61028912-61028931 | Msa0082230:intron | 35.0% | |
| !!! | GATGGTTGTTTTAAAATGGC+TGG | - | chr1_2:61028939-61028958 | Msa0082230:intron | 35.0% |
| AAATGATCGCTGCTGTTATT+TGG | + | chr1_2:61028982-61029001 | None:intergenic | 35.0% | |
| !! | GTGGAGTGTTTTGTAATAAG+AGG | - | chr1_2:61029103-61029122 | Msa0082230:intron | 35.0% |
| ! | GAGTGTTTTGTAATAAGAGG+AGG | - | chr1_2:61029106-61029125 | Msa0082230:intron | 35.0% |
| ATGGTGTGAAATTGGTTAGA+TGG | - | chr1_2:61029160-61029179 | Msa0082230:intron | 35.0% | |
| GATGGTAAGATTAAGGGATT+TGG | - | chr1_2:61029178-61029197 | Msa0082230:intron | 35.0% | |
| CAGTGAATTTGAAAACCACT+GGG | + | chr1_2:61029215-61029234 | None:intergenic | 35.0% | |
| AGAAAATAGTAGCAGGGATT+TGG | - | chr1_2:61029250-61029269 | Msa0082230:intron | 35.0% | |
| TTTCTGCATAACAGTCATAC+TGG | - | chr1_2:61029290-61029309 | Msa0082230:intron | 35.0% | |
| CTGGTATGCTTGATTTATAG+GGG | - | chr1_2:61029309-61029328 | Msa0082230:intron | 35.0% | |
| GTTATGAAGCTATACCGTTA+AGG | - | chr1_2:61029337-61029356 | Msa0082230:intron | 35.0% | |
| ! | TGAGTGTTACTCGTCTTAAT+TGG | - | chr1_2:61029441-61029460 | Msa0082230:intron | 35.0% |
| !! | CTGTTAAGTGCTATTTAGAC+GGG | - | chr1_2:61029585-61029604 | Msa0082230:CDS | 35.0% |
| TCACTAATTAACTCTGATGG+AGG | + | chr1_2:61029705-61029724 | None:intergenic | 35.0% | |
| ATTTAGTCACTGAAGCTGAA+GGG | + | chr1_2:61029801-61029820 | None:intergenic | 35.0% | |
| AATTTAGTCACTGAAGCTGA+AGG | + | chr1_2:61029802-61029821 | None:intergenic | 35.0% | |
| ! | CATTTTCTTTGGGTACAGAT+TGG | - | chr1_2:61029907-61029926 | Msa0082230:CDS | 35.0% |
| ! | TTTTCTTTGGGTACAGATTG+GGG | - | chr1_2:61029909-61029928 | Msa0082230:CDS | 35.0% |
| AATTTCCTTGTGCATAGTCT+GGG | + | chr1_2:61030389-61030408 | None:intergenic | 35.0% | |
| AACTAAAGACAAGTCAAGGA+AGG | - | chr1_2:61030462-61030481 | Msa0082230:intron | 35.0% | |
| AAGGCAACCACATTATTCAA+TGG | - | chr1_2:61030481-61030500 | Msa0082230:intron | 35.0% | |
| ACAGCATCCATTGAATAATG+TGG | + | chr1_2:61030491-61030510 | None:intergenic | 35.0% | |
| !! | TCTGACTTGCTCTATATGTT+TGG | - | chr1_2:61030579-61030598 | Msa0082230:intron | 35.0% |
| ! | TCTGTACATGACTCTCATTT+TGG | - | chr1_2:61030641-61030660 | Msa0082230:intron | 35.0% |
| TTGAACAACATAAGGAGATC+TGG | + | chr1_2:61030832-61030851 | None:intergenic | 35.0% | |
| !! | GTGAAAGTGTCTCTCTTATA+AGG | - | chr1_2:61030903-61030922 | Msa0082230:intron | 35.0% |
| GCATCTGTTACTATTGTTGA+TGG | - | chr1_2:61031056-61031075 | Msa0082230:intron | 35.0% | |
| !! | TACTATTGTTGATGGGCTTA+AGG | - | chr1_2:61031064-61031083 | Msa0082230:intron | 35.0% |
| TAATGAGATCCTACTGCATA+TGG | + | chr1_2:61031136-61031155 | None:intergenic | 35.0% | |
| TTCAAAGACCAATTGAGCTT+AGG | + | chr1_2:61031279-61031298 | None:intergenic | 35.0% | |
| TTATACTGTTTATGACAGGC+AGG | - | chr1_2:61031609-61031628 | Msa0082230:intron | 35.0% | |
| GATCGAAAACAGACTCTAAA+TGG | + | chr1_2:61031752-61031771 | None:intergenic | 35.0% | |
| ! | GTTTTCGATCCTCTTAATTG+TGG | - | chr1_2:61031762-61031781 | Msa0082230:intron | 35.0% |
| TCAATATGTTTACAGCTGCA+AGG | - | chr1_2:61031837-61031856 | Msa0082230:intron | 35.0% | |
| ACCAGAATCGATCAAAGTAA+AGG | - | chr1_2:61032071-61032090 | Msa0082230:CDS | 35.0% | |
| ! | GCCAAAAATAAATGGCCTTA+AGG | + | chr1_2:61032118-61032137 | None:intergenic | 35.0% |
| ! | ATCATACATGTTTTGTCCTG+TGG | + | chr1_2:61032223-61032242 | None:intergenic | 35.0% |
| TGAACAAGGAAGAAAGGATG+GGG | + | chr1_2:61027871-61027890 | None:intergenic | 40.0% | |
| GCTTCTTGAATCCAACTACA+GGG | + | chr1_2:61028043-61028062 | None:intergenic | 40.0% | |
| AGCTTCTTGAATCCAACTAC+AGG | + | chr1_2:61028044-61028063 | None:intergenic | 40.0% | |
| ATTGATCAGGACAAGGTTTG+TGG | + | chr1_2:61028106-61028125 | None:intergenic | 40.0% | |
| ! | TTATCAATTTTGTGGGGAGG+GGG | - | chr1_2:61028531-61028550 | Msa0082230:intron | 40.0% |
| ATTCACTAGTACTGTGGCAA+AGG | - | chr1_2:61028582-61028601 | Msa0082230:intron | 40.0% | |
| ATGTGTACAAGATGCATGGA+GGG | - | chr1_2:61028620-61028639 | Msa0082230:intron | 40.0% | |
| TTCTCAGGCACATACAAGTA+AGG | + | chr1_2:61028667-61028686 | None:intergenic | 40.0% | |
| TACTTGTATGTGCCTGAGAA+TGG | - | chr1_2:61028667-61028686 | Msa0082230:intron | 40.0% | |
| AATATGAGAATGGAGACGTG+TGG | - | chr1_2:61028736-61028755 | Msa0082230:intron | 40.0% | |
| AGGCAGTGTATAAGGAGATA+TGG | - | chr1_2:61028796-61028815 | Msa0082230:intron | 40.0% | |
| GGCAGTGTATAAGGAGATAT+GGG | - | chr1_2:61028797-61028816 | Msa0082230:intron | 40.0% | |
| GATCATTTCACTCTGATTGC+AGG | - | chr1_2:61028994-61029013 | Msa0082230:CDS | 40.0% | |
| !! | TGATTGCAGGACTGTTTTGA+GGG | - | chr1_2:61029007-61029026 | Msa0082230:CDS | 40.0% |
| ATTTGCAAAGTAAGGCATGG+TGG | - | chr1_2:61029084-61029103 | Msa0082230:intron | 40.0% | |
| ! | AGAGGAGGATGTAATTTTCG+TGG | - | chr1_2:61029121-61029140 | Msa0082230:intron | 40.0% |
| GCAGTGAATTTGAAAACCAC+TGG | + | chr1_2:61029216-61029235 | None:intergenic | 40.0% | |
| TTCAAATTCACTGCTATGCC+TGG | - | chr1_2:61029222-61029241 | Msa0082230:intron | 40.0% | |
| TCAAATTCACTGCTATGCCT+GGG | - | chr1_2:61029223-61029242 | Msa0082230:intron | 40.0% | |
| GGCTTGAGAAAATAGTAGCA+GGG | - | chr1_2:61029244-61029263 | Msa0082230:intron | 40.0% | |
| AAATAGTAGCAGGGATTTGG+TGG | - | chr1_2:61029253-61029272 | Msa0082230:intron | 40.0% | |
| TTCGACCTGTCTACAAAAAC+TGG | + | chr1_2:61029381-61029400 | None:intergenic | 40.0% | |
| TTTCTTTGGGTACAGATTGG+GGG | - | chr1_2:61029910-61029929 | Msa0082230:CDS | 40.0% | |
| ! | ATTACACCGTGTTAGCTTAG+AGG | + | chr1_2:61029975-61029994 | None:intergenic | 40.0% |
| CATTGAGAAGGGAAGGAAAA+AGG | + | chr1_2:61030022-61030041 | None:intergenic | 40.0% | |
| GACATTTCATTGAGAAGGGA+AGG | + | chr1_2:61030029-61030048 | None:intergenic | 40.0% | |
| GAATTTCCTTGTGCATAGTC+TGG | + | chr1_2:61030390-61030409 | None:intergenic | 40.0% | |
| GGGAAACTAAAGACAAGTCA+AGG | - | chr1_2:61030458-61030477 | Msa0082230:intron | 40.0% | |
| TGGATGCTGTCTCACATTTA+AGG | - | chr1_2:61030501-61030520 | Msa0082230:intron | 40.0% | |
| TGCTGTCTCACATTTAAGGA+TGG | - | chr1_2:61030505-61030524 | Msa0082230:intron | 40.0% | |
| !!! | GTAAACCAGGCCTAGTTTTA+TGG | - | chr1_2:61030727-61030746 | Msa0082230:intron | 40.0% |
| CACAACTGTAGCAGAATATG+TGG | + | chr1_2:61031025-61031044 | None:intergenic | 40.0% | |
| AATTTGCCCGACCTTTGTTA+AGG | - | chr1_2:61031320-61031339 | Msa0082230:intron | 40.0% | |
| TAACAGGCCTTAACAAAGGT+CGG | + | chr1_2:61031330-61031349 | None:intergenic | 40.0% | |
| AGACTGGGGATGTTAAGAAT+TGG | - | chr1_2:61031532-61031551 | Msa0082230:intron | 40.0% | |
| !! | TTATGAAGGTGCTGTACACT+TGG | - | chr1_2:61031635-61031654 | Msa0082230:intron | 40.0% |
| TTCAGATGGAAAGAGTAGAG+AGG | - | chr1_2:61031878-61031897 | Msa0082230:intron | 40.0% | |
| TCAGATGGAAAGAGTAGAGA+GGG | - | chr1_2:61031879-61031898 | Msa0082230:intron | 40.0% | |
| TAGAGAAGCAAACCTCACTT+GGG | - | chr1_2:61031959-61031978 | Msa0082230:CDS | 40.0% | |
| ! | GCCTTTACTTTGATCGATTC+TGG | + | chr1_2:61032075-61032094 | None:intergenic | 40.0% |
| ACTTTGGCATCTGTACCTTA+AGG | - | chr1_2:61032100-61032119 | Msa0082230:exon | 40.0% | |
| ATCCTAACACGAACATAGCA+AGG | - | chr1_2:61032192-61032211 | Msa0082230:five_prime_UTR | 40.0% | |
| ! | TTCCTTGCTATGTTCGTGTT+AGG | + | chr1_2:61032197-61032216 | None:intergenic | 40.0% |
| ACATAGCAAGGAAAAACCAC+AGG | - | chr1_2:61032204-61032223 | Msa0082230:five_prime_UTR | 40.0% | |
| AGGAAGAAAGGATGGGGTTT+GGG | + | chr1_2:61027865-61027884 | None:intergenic | 45.0% | |
| AAGGAAGAAAGGATGGGGTT+TGG | + | chr1_2:61027866-61027885 | None:intergenic | 45.0% | |
| AGAGAAAGAGAAACAGCGCA+CGG | + | chr1_2:61027906-61027925 | None:intergenic | 45.0% | |
| GAAGTTCTGCAAGACCTATC+AGG | - | chr1_2:61027986-61028005 | Msa0082230:three_prime_UTR | 45.0% | |
| AGCTCGCATGTATTCCTGAT+AGG | + | chr1_2:61028003-61028022 | None:intergenic | 45.0% | |
| GATGTGTACAAGATGCATGG+AGG | - | chr1_2:61028619-61028638 | Msa0082230:intron | 45.0% | |
| GAGGAGGGAGTCATTTCATT+TGG | - | chr1_2:61028695-61028714 | Msa0082230:intron | 45.0% | |
| AGATGGGATCTACTCTGTGA+AGG | - | chr1_2:61028776-61028795 | Msa0082230:intron | 45.0% | |
| CTCTGTGAAGGCAGTGTATA+AGG | - | chr1_2:61028788-61028807 | Msa0082230:intron | 45.0% | |
| ATAAGGAGATATGGGCCAAG+AGG | - | chr1_2:61028805-61028824 | Msa0082230:intron | 45.0% | |
| !! | GAAATTGTCAAGGGTGTCGA+TGG | - | chr1_2:61028921-61028940 | Msa0082230:intron | 45.0% |
| ! | GCTGCTGTTATTTGGTAGCA+CGG | + | chr1_2:61028974-61028993 | None:intergenic | 45.0% |
| ! | CTGATTGCAGGACTGTTTTG+AGG | - | chr1_2:61029006-61029025 | Msa0082230:CDS | 45.0% |
| ! | GGAGGATGTAATTTTCGTGG+TGG | - | chr1_2:61029124-61029143 | Msa0082230:intron | 45.0% |
| ! | GCTACTATTTTCTCAAGCCC+AGG | + | chr1_2:61029243-61029262 | None:intergenic | 45.0% |
| GGGCTTGAGAAAATAGTAGC+AGG | - | chr1_2:61029243-61029262 | Msa0082230:intron | 45.0% | |
| TGCTTGATTTATAGGGGCTG+CGG | - | chr1_2:61029315-61029334 | Msa0082230:intron | 45.0% | |
| TGAAGCTATACCGTTAAGGC+TGG | - | chr1_2:61029341-61029360 | Msa0082230:intron | 45.0% | |
| GAAGCTATACCGTTAAGGCT+GGG | - | chr1_2:61029342-61029361 | Msa0082230:intron | 45.0% | |
| ! | CGTTGCCAGTTTTTGTAGAC+AGG | - | chr1_2:61029373-61029392 | Msa0082230:intron | 45.0% |
| TTTGTAGACAGGTCGAACCT+TGG | - | chr1_2:61029384-61029403 | Msa0082230:intron | 45.0% | |
| ! | CGTGTTAGCTTAGAGGTAGT+GGG | + | chr1_2:61029968-61029987 | None:intergenic | 45.0% |
| CCACTACCTCTAAGCTAACA+CGG | - | chr1_2:61029966-61029985 | Msa0082230:CDS | 45.0% | |
| AGGAAATTCTTCAGAGTCCC+TGG | - | chr1_2:61030401-61030420 | Msa0082230:intron | 45.0% | |
| AAGAGCTCACAAGCAAGTGA+TGG | + | chr1_2:61030535-61030554 | None:intergenic | 45.0% | |
| TGGAACCATAAAACTAGGCC+TGG | + | chr1_2:61030735-61030754 | None:intergenic | 45.0% | |
| TAATGTGGAACTGCGCCAAT+TGG | + | chr1_2:61030866-61030885 | None:intergenic | 45.0% | |
| TTGGCGCAGTTCCACATTAT+CGG | - | chr1_2:61030867-61030886 | Msa0082230:intron | 45.0% | |
| !! | TAATCTGGCTCTTCCATGAC+AGG | - | chr1_2:61030965-61030984 | Msa0082230:intron | 45.0% |
| TCAAACACTGTGTCCTGTCA+TGG | + | chr1_2:61030981-61031000 | None:intergenic | 45.0% | |
| ! | GATCCAGTTTCTCTGACTTG+TGG | - | chr1_2:61030999-61031018 | Msa0082230:intron | 45.0% |
| AAAATGTCCTATGTGCCGAG+AGG | - | chr1_2:61031103-61031122 | Msa0082230:intron | 45.0% | |
| GCATATGGTAGCTAACCTCT+CGG | + | chr1_2:61031121-61031140 | None:intergenic | 45.0% | |
| ! | GGTTAGCTACCATATGCAGT+AGG | - | chr1_2:61031124-61031143 | Msa0082230:intron | 45.0% |
| GCAGTAGGATCTCATTAGAG+TGG | - | chr1_2:61031139-61031158 | Msa0082230:intron | 45.0% | |
| GATCCTGTCCTAAGCTCAAT+TGG | - | chr1_2:61031268-61031287 | Msa0082230:intron | 45.0% | |
| AGACCAATTGAGCTTAGGAC+AGG | + | chr1_2:61031274-61031293 | None:intergenic | 45.0% | |
| AACAGGCCTTAACAAAGGTC+GGG | + | chr1_2:61031329-61031348 | None:intergenic | 45.0% | |
| TGACAGGCAGGAGTTTATGA+AGG | - | chr1_2:61031621-61031640 | Msa0082230:intron | 45.0% | |
| ! | TTTACAGCTGCAAGGAGTAC+TGG | - | chr1_2:61031845-61031864 | Msa0082230:intron | 45.0% |
| !! | TTACAGCTGCAAGGAGTACT+GGG | - | chr1_2:61031846-61031865 | Msa0082230:intron | 45.0% |
| GTAGAGAAGCAAACCTCACT+TGG | - | chr1_2:61031958-61031977 | Msa0082230:CDS | 45.0% | |
| CAAACCTCACTTGGGTTCAA+TGG | - | chr1_2:61031967-61031986 | Msa0082230:CDS | 45.0% | |
| TACACCATTGAACCCAAGTG+AGG | + | chr1_2:61031974-61031993 | None:intergenic | 45.0% | |
| GCTGGATAATGCATTCTCTC+TGG | + | chr1_2:61032170-61032189 | None:intergenic | 45.0% | |
| ATGTTCGTGTTAGGATACGC+TGG | + | chr1_2:61032188-61032207 | None:intergenic | 45.0% | |
| !!! | ATTATTTTGTTTTAATTTTA+CGG | - | chr1_2:61028161-61028180 | Msa0082230:CDS | 5.0% |
| TCAGGAATACATGCGAGCTC+AGG | - | chr1_2:61028004-61028023 | Msa0082230:three_prime_UTR | 50.0% | |
| CAGAAGAAGCTCCCTGTAGT+TGG | - | chr1_2:61028029-61028048 | Msa0082230:three_prime_UTR | 50.0% | |
| !! | CATGGGCATTGATCAGGACA+AGG | + | chr1_2:61028113-61028132 | None:intergenic | 50.0% |
| !! | GACGTACATGGGCATTGATC+AGG | + | chr1_2:61028119-61028138 | None:intergenic | 50.0% |
| !! | ATGGGTTCGGTGACGTACAT+GGG | + | chr1_2:61028130-61028149 | None:intergenic | 50.0% |
| GCGGATGTGTACAAGATGCA+TGG | - | chr1_2:61028616-61028635 | Msa0082230:intron | 50.0% | |
| TATGTGCCTGAGAATGGAGC+TGG | - | chr1_2:61028673-61028692 | Msa0082230:intron | 50.0% | |
| ATGAGAATGGAGACGTGTGG+AGG | - | chr1_2:61028739-61028758 | Msa0082230:intron | 50.0% | |
| TTGGGTATGACATCTCCCAG+TGG | - | chr1_2:61029197-61029216 | Msa0082230:intron | 50.0% | |
| ACAGGTCGAACCTTGGTTTC+TGG | - | chr1_2:61029391-61029410 | Msa0082230:intron | 50.0% | |
| !! | ACCTTGGTTTCTGGCATCAG+TGG | - | chr1_2:61029400-61029419 | Msa0082230:intron | 50.0% |
| TCCACTGATGCCAGAAACCA+AGG | + | chr1_2:61029404-61029423 | None:intergenic | 50.0% | |
| TGGCATCAGTGGAAGTGAGA+TGG | - | chr1_2:61029411-61029430 | Msa0082230:intron | 50.0% | |
| CATCAGTGGAAGTGAGATGG+TGG | - | chr1_2:61029414-61029433 | Msa0082230:intron | 50.0% | |
| !! | AGTGGAAGTGAGATGGTGGA+GGG | - | chr1_2:61029418-61029437 | Msa0082230:intron | 50.0% |
| ! | AGCTGAAGGGTCGGTCATTT+TGG | + | chr1_2:61029788-61029807 | None:intergenic | 50.0% |
| AGTCACTGAAGCTGAAGGGT+CGG | + | chr1_2:61029797-61029816 | None:intergenic | 50.0% | |
| ! | CCGTGTTAGCTTAGAGGTAG+TGG | + | chr1_2:61029969-61029988 | None:intergenic | 50.0% |
| CTGGAACGACATCTTGCTTC+TGG | - | chr1_2:61030089-61030108 | Msa0082230:intron | 50.0% | |
| ACAAGCCCAGACTATGCACA+AGG | - | chr1_2:61030381-61030400 | Msa0082230:intron | 50.0% | |
| TCCCTGGCTTATTGAGCTGA+TGG | - | chr1_2:61030417-61030436 | Msa0082230:intron | 50.0% | |
| GCCATCAGCTCAATAAGCCA+GGG | + | chr1_2:61030421-61030440 | None:intergenic | 50.0% | |
| TGCCATCAGCTCAATAAGCC+AGG | + | chr1_2:61030422-61030441 | None:intergenic | 50.0% | |
| TGGAACTGCGCCAATTGGTT+AGG | + | chr1_2:61030861-61030880 | None:intergenic | 50.0% | |
| TGGCCACAAGTCAGAGAAAC+TGG | + | chr1_2:61031005-61031024 | None:intergenic | 50.0% | |
| TAGCTAACCTCTCGGCACAT+AGG | + | chr1_2:61031113-61031132 | None:intergenic | 50.0% | |
| TGTGCATCAGACCAAGAACC+AGG | - | chr1_2:61031246-61031265 | Msa0082230:intron | 50.0% | |
| ! | TAGGACAGGATCCTGGTTCT+TGG | + | chr1_2:61031260-61031279 | None:intergenic | 50.0% |
| TTGAGCTTAGGACAGGATCC+TGG | + | chr1_2:61031267-61031286 | None:intergenic | 50.0% | |
| CTGGGAGGAAAGACTTCAGA+TGG | - | chr1_2:61031864-61031883 | Msa0082230:intron | 50.0% | |
| AGAGAGGGTCAAGCAAGCAA+AGG | - | chr1_2:61031894-61031913 | Msa0082230:intron | 50.0% | |
| ! | TCAAGCAAGCAAAGGAGCAC+TGG | - | chr1_2:61031902-61031921 | Msa0082230:intron | 50.0% |
| !! | CAAGCAAGCAAAGGAGCACT+GGG | - | chr1_2:61031903-61031922 | Msa0082230:intron | 50.0% |
| ! | AACGCAGTGTAGAGCGTTCA+TGG | - | chr1_2:61031927-61031946 | Msa0082230:intron | 50.0% |
| ! | ACGCAGTGTAGAGCGTTCAT+GGG | - | chr1_2:61031928-61031947 | Msa0082230:intron | 50.0% |
| !! | GATGGGTTCGGTGACGTACA+TGG | + | chr1_2:61028131-61028150 | None:intergenic | 55.0% |
| GGCAAAGGATGCAGCAGTAG+CGG | - | chr1_2:61028597-61028616 | Msa0082230:intron | 55.0% | |
| CTGAGAATGGAGCTGGAGGA+GGG | - | chr1_2:61028680-61028699 | Msa0082230:intron | 55.0% | |
| AGAATGGAGACGTGTGGAGG+TGG | - | chr1_2:61028742-61028761 | Msa0082230:intron | 55.0% | |
| AGGTGGTTGGAAGAGGCAGA+TGG | - | chr1_2:61028759-61028778 | Msa0082230:intron | 55.0% | |
| GGTGGTTGGAAGAGGCAGAT+GGG | - | chr1_2:61028760-61028779 | Msa0082230:intron | 55.0% | |
| !! | AGTAGCAGGGATTTGGTGGC+AGG | - | chr1_2:61029257-61029276 | Msa0082230:intron | 55.0% |
| !! | GTAGCAGGGATTTGGTGGCA+GGG | - | chr1_2:61029258-61029277 | Msa0082230:intron | 55.0% |
| ! | GAGCTTGCTCCCAGCCTTAA+CGG | + | chr1_2:61029354-61029373 | None:intergenic | 55.0% |
| ! | CAGTGGAAGTGAGATGGTGG+AGG | - | chr1_2:61029417-61029436 | Msa0082230:intron | 55.0% |
| TCAGCGTGCACAGAAACTGC+TGG | - | chr1_2:61030070-61030089 | Msa0082230:intron | 55.0% | |
| GTGCCTGAGAATGGAGCTGG+AGG | - | chr1_2:61028676-61028695 | Msa0082230:intron | 60.0% | |
| CCTCCTCCAGCTCCATTCTC+AGG | + | chr1_2:61028682-61028701 | None:intergenic | 60.0% | |
| CCTGAGAATGGAGCTGGAGG+AGG | - | chr1_2:61028679-61028698 | Msa0082230:intron | 60.0% | |
| TGGAGACGTGTGGAGGTGGT+TGG | - | chr1_2:61028746-61028765 | Msa0082230:intron | 60.0% | |
| CGTGTGGAGGTGGTTGGAAG+AGG | - | chr1_2:61028752-61028771 | Msa0082230:intron | 60.0% | |
| !! | GGGATTTGGTGGCAGGGCTT+TGG | - | chr1_2:61029264-61029283 | Msa0082230:intron | 60.0% |
| !! | CAGCTGCAAGGAGTACTGGG+AGG | - | chr1_2:61031849-61031868 | Msa0082230:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 61027807 | 61032277 | 61027807 | ID=Msa0082230;Name=Msa0082230 |
| chr1_2 | mRNA | 61027807 | 61032277 | 61027807 | ID=Msa0082230-mRNA-1;Parent=Msa0082230;Name=Msa0082230-mRNA-1;_AED=0.05;_eAED=0.07;_QI=177|0.5|0.71|1|0.5|0.57|7|320|319 |
| chr1_2 | exon | 61027807 | 61028232 | 61027807 | ID=Msa0082230-mRNA-1:exon:20049;Parent=Msa0082230-mRNA-1 |
| chr1_2 | exon | 61028399 | 61028457 | 61028399 | ID=Msa0082230-mRNA-1:exon:20048;Parent=Msa0082230-mRNA-1 |
| chr1_2 | exon | 61028960 | 61029097 | 61028960 | ID=Msa0082230-mRNA-1:exon:20047;Parent=Msa0082230-mRNA-1 |
| chr1_2 | exon | 61029484 | 61029723 | 61029484 | ID=Msa0082230-mRNA-1:exon:20046;Parent=Msa0082230-mRNA-1 |
| chr1_2 | exon | 61029834 | 61030077 | 61029834 | ID=Msa0082230-mRNA-1:exon:20045;Parent=Msa0082230-mRNA-1 |
| chr1_2 | exon | 61031258 | 61031282 | 61031258 | ID=Msa0082230-mRNA-1:exon:20044;Parent=Msa0082230-mRNA-1 |
| chr1_2 | exon | 61031953 | 61032277 | 61031953 | ID=Msa0082230-mRNA-1:exon:20043;Parent=Msa0082230-mRNA-1 |
| chr1_2 | five_prime_UTR | 61032101 | 61032277 | 61032101 | ID=Msa0082230-mRNA-1:five_prime_utr;Parent=Msa0082230-mRNA-1 |
| chr1_2 | CDS | 61031953 | 61032100 | 61031953 | ID=Msa0082230-mRNA-1:cds;Parent=Msa0082230-mRNA-1 |
| chr1_2 | CDS | 61031258 | 61031282 | 61031258 | ID=Msa0082230-mRNA-1:cds;Parent=Msa0082230-mRNA-1 |
| chr1_2 | CDS | 61029834 | 61030077 | 61029834 | ID=Msa0082230-mRNA-1:cds;Parent=Msa0082230-mRNA-1 |
| chr1_2 | CDS | 61029484 | 61029723 | 61029484 | ID=Msa0082230-mRNA-1:cds;Parent=Msa0082230-mRNA-1 |
| chr1_2 | CDS | 61028960 | 61029097 | 61028960 | ID=Msa0082230-mRNA-1:cds;Parent=Msa0082230-mRNA-1 |
| chr1_2 | CDS | 61028399 | 61028457 | 61028399 | ID=Msa0082230-mRNA-1:cds;Parent=Msa0082230-mRNA-1 |
| chr1_2 | CDS | 61028127 | 61028232 | 61028127 | ID=Msa0082230-mRNA-1:cds;Parent=Msa0082230-mRNA-1 |
| chr1_2 | three_prime_UTR | 61027807 | 61028126 | 61027807 | ID=Msa0082230-mRNA-1:three_prime_utr;Parent=Msa0082230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
