Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174820 | XP_003591544.1 | 94.424 | 269 | 9 | 2 | 1 | 264 | 1 | 268 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174820 | sp|Q9SRX9|BAH1_ARATH | 63.194 | 288 | 81 | 6 | 1 | 264 | 1 | 287 | 1.78e-121 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174820 | G7IF76 | 94.424 | 269 | 9 | 2 | 1 | 264 | 1 | 268 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043850 | Msa0174820 | 0.801959 | 7.038661e-49 | -8.615850e-47 |
| Msa0077370 | Msa0174820 | 0.834220 | 3.400435e-56 | -8.615850e-47 |
| Msa0081660 | Msa0174820 | 0.815701 | 8.076442e-52 | -8.615850e-47 |
| Msa0082230 | Msa0174820 | 0.896065 | 5.275072e-76 | -8.615850e-47 |
| Msa0082420 | Msa0174820 | 0.869703 | 2.538418e-66 | -8.615850e-47 |
| Msa0086190 | Msa0174820 | 0.807966 | 3.904163e-50 | -8.615850e-47 |
| Msa0094710 | Msa0174820 | 0.818469 | 1.928249e-52 | -8.615850e-47 |
| Msa0127870 | Msa0174820 | 0.826713 | 2.332125e-54 | -8.615850e-47 |
| Msa0128800 | Msa0174820 | 0.888013 | 8.600421e-73 | -8.615850e-47 |
| Msa0128980 | Msa0174820 | 0.950205 | 2.662806e-108 | -8.615850e-47 |
| Msa0172740 | Msa0174820 | 0.804245 | 2.370216e-49 | -8.615850e-47 |
| Msa0174010 | Msa0174820 | 0.832382 | 9.761049e-56 | -8.615850e-47 |
| Msa0174100 | Msa0174820 | 0.840989 | 6.236819e-58 | -8.615850e-47 |
| Msa0174820 | Msa0390550 | 0.831769 | 1.383193e-55 | -8.615850e-47 |
| Msa0174820 | Msa0403470 | -0.829608 | 4.680172e-55 | -8.615850e-47 |
| Msa0174820 | Msa0474560 | 0.806273 | 8.912280e-50 | -8.615850e-47 |
| Msa0174820 | Msa0517990 | 0.804971 | 1.671804e-49 | -8.615850e-47 |
| Msa0174820 | Msa0527880 | 0.805333 | 1.404063e-49 | -8.615850e-47 |
| Msa0174820 | Msa0529000 | 0.827344 | 1.647902e-54 | -8.615850e-47 |
| Msa0174820 | Msa0588590 | 0.834874 | 2.328741e-56 | -8.615850e-47 |
| Msa0174820 | Msa0588620 | 0.829777 | 4.257869e-55 | -8.615850e-47 |
| Msa0174820 | Msa0641130 | 0.802380 | 5.766332e-49 | -8.615850e-47 |
| Msa0174820 | Msa0708600 | 0.814174 | 1.762313e-51 | -8.615850e-47 |
| Msa0174820 | Msa0784850 | 0.803376 | 3.590465e-49 | -8.615850e-47 |
| Msa0174820 | Msa0810440 | 0.806339 | 8.628973e-50 | -8.615850e-47 |
| Msa0174820 | Msa0817710 | 0.821328 | 4.279682e-53 | -8.615850e-47 |
| Msa0174820 | Msa0875080 | 0.811694 | 6.159053e-51 | -8.615850e-47 |
| Msa0174820 | Msa0907430 | 0.802499 | 5.450980e-49 | -8.615850e-47 |
| Msa0174820 | Msa0940340 | 0.829523 | 4.907699e-55 | -8.615850e-47 |
| Msa0174820 | Msa0968470 | -0.803807 | 2.922850e-49 | -8.615850e-47 |
| Msa0174820 | Msa1011250 | 0.820107 | 8.169363e-53 | -8.615850e-47 |
| Msa0174820 | Msa1031460 | 0.841686 | 4.086750e-58 | -8.615850e-47 |
| Msa0174820 | Msa1042730 | 0.802948 | 4.403045e-49 | -8.615850e-47 |
| Msa0174820 | Msa1070540 | 0.847361 | 1.214268e-59 | -8.615850e-47 |
| Msa0174820 | Msa1079720 | -0.805765 | 1.139620e-49 | -8.615850e-47 |
| Msa0174820 | Msa1101240 | 0.846291 | 2.382262e-59 | -8.615850e-47 |
| Msa0174820 | Msa1114680 | 0.808487 | 3.023429e-50 | -8.615850e-47 |
| Msa0174820 | Msa1124530 | -0.806403 | 8.368530e-50 | -8.615850e-47 |
| Msa0174820 | Msa1168640 | 0.847214 | 1.332142e-59 | -8.615850e-47 |
| Msa0174820 | Msa1208450 | -0.824226 | 9.051138e-54 | -8.615850e-47 |
| Msa0174820 | Msa1208990 | 0.819165 | 1.340459e-52 | -8.615850e-47 |
| Msa0174820 | Msa1217260 | 0.802674 | 5.016434e-49 | -8.615850e-47 |
| Msa0174820 | Msa1298390 | -0.803327 | 3.675573e-49 | -8.615850e-47 |
| Msa0174820 | Msa1370810 | 0.865923 | 4.151709e-65 | -8.615850e-47 |
| Msa0174820 | Msa1379020 | 0.817643 | 2.964533e-52 | -8.615850e-47 |
| Msa0174820 | Msa1407880 | 0.817444 | 3.286983e-52 | -8.615850e-47 |
| Msa0174820 | Msa1465860 | 0.808154 | 3.559969e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174820 | MtrunA17_Chr1g0195671 | 94.424 | 269 | 9 | 2 | 1 | 264 | 1 | 268 | 0.0 | 518 |
| Msa0174820 | MtrunA17_Chr7g0269281 | 81.679 | 262 | 43 | 1 | 1 | 257 | 1 | 262 | 4.33e-150 | 422 |
| Msa0174820 | MtrunA17_Chr7g0268131 | 40.727 | 275 | 143 | 5 | 1 | 257 | 1 | 273 | 1.58e-63 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174820 | AT1G02860.2 | 63.194 | 288 | 81 | 6 | 1 | 264 | 1 | 287 | 1.18e-122 | 354 |
| Msa0174820 | AT1G02860.1 | 63.194 | 288 | 81 | 6 | 1 | 264 | 1 | 287 | 1.81e-122 | 353 |
| Msa0174820 | AT1G02860.3 | 61.277 | 235 | 67 | 5 | 1 | 211 | 1 | 235 | 1.27e-91 | 271 |
| Msa0174820 | AT2G38920.2 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 4.75e-56 | 184 |
| Msa0174820 | AT2G38920.5 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 5.09e-56 | 184 |
| Msa0174820 | AT2G38920.1 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 5.09e-56 | 184 |
| Msa0174820 | AT2G38920.6 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 5.09e-56 | 184 |
| Msa0174820 | AT2G38920.4 | 37.870 | 169 | 99 | 2 | 48 | 211 | 68 | 235 | 1.05e-31 | 118 |
| Msa0174820 | AT2G38920.3 | 35.625 | 160 | 97 | 2 | 48 | 202 | 68 | 226 | 4.75e-26 | 103 |
Find 87 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGCTGTCTCACATTTA+AGG | 0.203509 | 1_4:+60592572 | Msa0174820:CDS |
| GCCTTTACTTTGATCGATTC+TGG | 0.234863 | 1_4:-60594429 | None:intergenic |
| AGGATATGGGGTTTGGGTTT+GGG | 0.236853 | 1_4:-60589925 | None:intergenic |
| AAGGATATGGGGTTTGGGTT+TGG | 0.258196 | 1_4:-60589926 | None:intergenic |
| CTGGAACGACATCTTGCTTC+TGG | 0.289645 | 1_4:+60592160 | Msa0174820:CDS |
| TGGCATTACATATCAATCTA+AGG | 0.297202 | 1_4:+60592508 | Msa0174820:CDS |
| TGAACAAGGAAGAAAGGATA+TGG | 0.299635 | 1_4:-60589939 | None:intergenic |
| GAATTTCCTTGTGCATAGTC+TGG | 0.333742 | 1_4:-60592458 | None:intergenic |
| TTCCTTGCTATGTTCATGTT+AGG | 0.340036 | 1_4:-60594551 | None:intergenic |
| ATTGAGAAGGGAAGGGAAAA+AGG | 0.353205 | 1_4:-60592089 | None:intergenic |
| GGAAGAAAGGATATGGGGTT+TGG | 0.354042 | 1_4:-60589932 | None:intergenic |
| TACTATTGTTGATGGGCTTA+AGG | 0.357492 | 1_4:+60593135 | Msa0174820:CDS |
| CAATGAAATGTCAGAAATAG+TGG | 0.363110 | 1_4:+60592108 | Msa0174820:CDS |
| TGGCCACAAGTCAGAGAAAC+TGG | 0.385626 | 1_4:-60593073 | None:intergenic |
| TTTACAGCTGCAAGGAGTAC+TGG | 0.387587 | 1_4:+60594202 | Msa0174820:intron |
| TCAACATGAGAATGTACTTT+CGG | 0.395088 | 1_4:-60592186 | None:intergenic |
| GCATCTGTTACTATTGTTGA+TGG | 0.400772 | 1_4:+60593127 | Msa0174820:CDS |
| TCTGACTTGCTCTATATGTT+TGG | 0.403804 | 1_4:+60592650 | Msa0174820:CDS |
| GAAGAAAGGATATGGGGTTT+GGG | 0.408446 | 1_4:-60589931 | None:intergenic |
| TGTTGAAAGGAAAATCAAAA+AGG | 0.412750 | 1_4:+60592203 | Msa0174820:CDS |
| AACGCAGTGTAGAGCGTTCA+TGG | 0.417759 | 1_4:+60594284 | Msa0174820:exon |
| GAAGTTCTGCAAGACCTATC+AGG | 0.420448 | 1_4:+60590057 | Msa0174820:CDS |
| TTTGAGATAGATATGATAAC+GGG | 0.422854 | 1_4:+60589892 | Msa0174820:five_prime_UTR |
| CAAACCTCACTTGGGTTCAA+TGG | 0.439730 | 1_4:+60594324 | Msa0174820:three_prime_UTR |
| GACGTACATGGGCATTGATC+AGG | 0.450499 | 1_4:-60590187 | None:intergenic |
| AGCTTCTTGAATCCAACTAC+AGG | 0.454546 | 1_4:-60590112 | None:intergenic |
| TCAAGCAAGCAAAGGAGCAC+TGG | 0.456757 | 1_4:+60594259 | Msa0174820:CDS |
| CAGAAGAAGCTCCCTGTAGT+TGG | 0.458661 | 1_4:+60590100 | Msa0174820:CDS |
| CATCTGTTACTATTGTTGAT+GGG | 0.462476 | 1_4:+60593128 | Msa0174820:CDS |
| AGGAAATTCTTCAGAGTCCC+TGG | 0.466281 | 1_4:+60592472 | Msa0174820:CDS |
| ACCAGAATCGATCAAAGTAA+AGG | 0.467205 | 1_4:+60594428 | Msa0174820:three_prime_UTR |
| GAACAAGGAAGAAAGGATAT+GGG | 0.472657 | 1_4:-60589938 | None:intergenic |
| TGCCATCAGCTCAATAAGCC+AGG | 0.477293 | 1_4:-60592490 | None:intergenic |
| GATCCAGTTTCTCTGACTTG+TGG | 0.486686 | 1_4:+60593070 | Msa0174820:CDS |
| GACATTTCATTGAGAAGGGA+AGG | 0.489540 | 1_4:-60592097 | None:intergenic |
| TTTCTGACATTTCATTGAGA+AGG | 0.491436 | 1_4:-60592102 | None:intergenic |
| CTCAAATCCTCCTTGCTCTA+CGG | 0.491837 | 1_4:-60589875 | None:intergenic |
| ATTGATCAGGACAAGGTTTG+TGG | 0.494079 | 1_4:-60590174 | None:intergenic |
| AATTTCCTTGTGCATAGTCT+GGG | 0.496401 | 1_4:-60592457 | None:intergenic |
| GCTGGATAATGCATTCTCTC+TGG | 0.501749 | 1_4:-60594524 | None:intergenic |
| ACTTTGGCATCTGTACCTAA+AGG | 0.502566 | 1_4:+60594457 | Msa0174820:three_prime_UTR |
| ATTTGAGATAGATATGATAA+CGG | 0.508006 | 1_4:+60589891 | Msa0174820:five_prime_UTR |
| GTAGAGAAGCAAACCTCACT+TGG | 0.508655 | 1_4:+60594315 | Msa0174820:three_prime_UTR |
| CATACTACTTTAATTCATGA+AGG | 0.511669 | 1_4:+60592229 | Msa0174820:CDS |
| ATAATATGAACAAGGAAGAA+AGG | 0.517064 | 1_4:-60589945 | None:intergenic |
| TCAGGAATACATGCGAGCTC+AGG | 0.526255 | 1_4:+60590075 | Msa0174820:CDS |
| AATACTAAAGAAATACGATA+AGG | 0.526973 | 1_4:+60592300 | Msa0174820:CDS |
| TTCTGACATTTCATTGAGAA+GGG | 0.527417 | 1_4:-60592101 | None:intergenic |
| TTACAGCTGCAAGGAGTACT+GGG | 0.534094 | 1_4:+60594203 | Msa0174820:intron |
| GGCATTACATATCAATCTAA+GGG | 0.535814 | 1_4:+60592509 | Msa0174820:CDS |
| AAGGCAACCACATTATTCAA+TGG | 0.537425 | 1_4:+60592552 | Msa0174820:CDS |
| TCCCTGGCTTATTGAGCTGA+TGG | 0.545974 | 1_4:+60592488 | Msa0174820:CDS |
| CTGGGAGGAAAGACTTCAGA+TGG | 0.554408 | 1_4:+60594221 | Msa0174820:CDS |
| TCAGCGTGCACAGAAACTGC+TGG | 0.555825 | 1_4:+60592141 | Msa0174820:CDS |
| CACAACTGTAGCAGAATATG+TGG | 0.556209 | 1_4:-60593093 | None:intergenic |
| AGCTCGCATGTATTCCTGAT+AGG | 0.561249 | 1_4:-60590071 | None:intergenic |
| CAAGCAAGCAAAGGAGCACT+GGG | 0.568388 | 1_4:+60594260 | Msa0174820:CDS |
| TCAATATGTTTACAGCTGCA+AGG | 0.570008 | 1_4:+60594194 | Msa0174820:intron |
| TGCTGTCTCACATTTAAGGA+TGG | 0.573316 | 1_4:+60592576 | Msa0174820:CDS |
| ATCCTAACATGAACATAGCA+AGG | 0.577270 | 1_4:+60594549 | Msa0174820:three_prime_UTR |
| TCAGATGGAAAGAGTAGAGA+GGG | 0.577968 | 1_4:+60594236 | Msa0174820:CDS |
| AAGTACATTCTCATGTTGAA+AGG | 0.578077 | 1_4:+60592190 | Msa0174820:CDS |
| GGGAAACTAAAGACAAGTCA+AGG | 0.583655 | 1_4:+60592529 | Msa0174820:CDS |
| AATGAAATGTCAGAAATAGT+GGG | 0.585835 | 1_4:+60592109 | Msa0174820:CDS |
| TAACATGTTTCCGTAGAGCA+AGG | 0.586503 | 1_4:+60589865 | None:intergenic |
| ATGTTCATGTTAGGATACGC+TGG | 0.591043 | 1_4:-60594542 | None:intergenic |
| ACGCAGTGTAGAGCGTTCAT+GGG | 0.593633 | 1_4:+60594285 | Msa0174820:exon |
| GCCATCAGCTCAATAAGCCA+GGG | 0.598446 | 1_4:-60592489 | None:intergenic |
| CATGGGCATTGATCAGGACA+AGG | 0.604815 | 1_4:-60590181 | None:intergenic |
| AGAGAGGGTCAAGCAAGCAA+AGG | 0.606390 | 1_4:+60594251 | Msa0174820:CDS |
| TAGCTTACCTCTCGGCACAT+AGG | 0.606824 | 1_4:-60593181 | None:intergenic |
| ACATTTCATTGAGAAGGGAA+GGG | 0.609739 | 1_4:-60592096 | None:intergenic |
| AAGAGCTCACAAGCAAGTGA+TGG | 0.610123 | 1_4:-60592603 | None:intergenic |
| AACTAAAGACAAGTCAAGGA+AGG | 0.614374 | 1_4:+60592533 | Msa0174820:CDS |
| AACAAGGAAGAAAGGATATG+GGG | 0.622519 | 1_4:-60589937 | None:intergenic |
| AGAGAAAGAGAAACAGCGCA+CGG | 0.627878 | 1_4:-60589974 | None:intergenic |
| TACACCATTGAACCCAAGTG+AGG | 0.633884 | 1_4:-60594328 | None:intergenic |
| TAGAGAAGCAAACCTCACTT+GGG | 0.636136 | 1_4:+60594316 | Msa0174820:three_prime_UTR |
| TTCAGATGGAAAGAGTAGAG+AGG | 0.639549 | 1_4:+60594235 | Msa0174820:CDS |
| GCTTCTTGAATCCAACTACA+GGG | 0.643810 | 1_4:-60590111 | None:intergenic |
| CATGTTTCCGTAGAGCAAGG+AGG | 0.677715 | 1_4:+60589868 | None:intergenic |
| GGAAGTGAATAATATGAACA+AGG | 0.680477 | 1_4:-60589953 | None:intergenic |
| TTGAGATAGATATGATAACG+GGG | 0.686299 | 1_4:+60589893 | Msa0174820:five_prime_UTR |
| ACAAGCCCAGACTATGCACA+AGG | 0.690000 | 1_4:+60592452 | Msa0174820:CDS |
| ACAGCATCCATTGAATAATG+TGG | 0.696194 | 1_4:-60592559 | None:intergenic |
| AAAATGTCCTATGTGCCGAG+AGG | 0.727589 | 1_4:+60593174 | Msa0174820:CDS |
| CAGCTGCAAGGAGTACTGGG+AGG | 0.743316 | 1_4:+60594206 | Msa0174820:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTATTATCAATTTTG+TGG | + | chr1_4:60590595-60590614 | Msa0174820:intron | 10.0% |
| !!! | TTAATTATTATCAATTTTGT+GGG | + | chr1_4:60590596-60590615 | Msa0174820:intron | 10.0% |
| !! | AAATAATTAATCGAAATGAT+GGG | - | chr1_4:60590219-60590238 | None:intergenic | 15.0% |
| !! | AAAATAATTAATCGAAATGA+TGG | - | chr1_4:60590220-60590239 | None:intergenic | 15.0% |
| !! | CAAACATTTGAAAATAATTT+GGG | - | chr1_4:60590285-60590304 | None:intergenic | 15.0% |
| !! | TCAAACATTTGAAAATAATT+TGG | - | chr1_4:60590286-60590305 | None:intergenic | 15.0% |
| !!! | TAATTATTATCAATTTTGTG+GGG | + | chr1_4:60590597-60590616 | Msa0174820:intron | 15.0% |
| !!! | TTCAATTGATAATTTTAATC+TGG | + | chr1_4:60593021-60593040 | Msa0174820:intron | 15.0% |
| !!! | TAATTCAATTCATTTGTTAA+TGG | - | chr1_4:60594063-60594082 | None:intergenic | 15.0% |
| !! | ATTGAATTAAAATAAAGAGA+TGG | + | chr1_4:60594074-60594093 | Msa0174820:intron | 15.0% |
| !! | GTAAACATATTGAAATTATA+AGG | - | chr1_4:60594187-60594206 | None:intergenic | 15.0% |
| !!! | ATTTGAGATAGATATGATAA+CGG | + | chr1_4:60589891-60589910 | Msa0174820:five_prime_UTR | 20.0% |
| !! | GATGAATAAAAATTGAATGA+AGG | - | chr1_4:60590355-60590374 | None:intergenic | 20.0% |
| !! | AAATTCATGAACTAAATTGA+TGG | - | chr1_4:60590461-60590480 | None:intergenic | 20.0% |
| !! | TAGGAGTTTCATTAATATTA+AGG | - | chr1_4:60590487-60590506 | None:intergenic | 20.0% |
| !! | TTAATATTGAGAGTTCATTT+AGG | - | chr1_4:60590506-60590525 | None:intergenic | 20.0% |
| !! | TAATTAATTATATGTCCTTC+AGG | - | chr1_4:60590583-60590602 | None:intergenic | 20.0% |
| !! | ATAATAAATTGATGAAGTGT+TGG | - | chr1_4:60590911-60590930 | None:intergenic | 20.0% |
| !! | ATATAATTATGGTGTGAAAT+TGG | + | chr1_4:60591222-60591241 | Msa0174820:intron | 20.0% |
| !!! | GATATTTCAATTGTATTGAT+TGG | + | chr1_4:60591677-60591696 | Msa0174820:intron | 20.0% |
| !! | TATAAGAATTAAGAGTTTGT+AGG | + | chr1_4:60591913-60591932 | Msa0174820:intron | 20.0% |
| !!! | TATAATGATGTCATTTTCTT+TGG | + | chr1_4:60591966-60591985 | Msa0174820:intron | 20.0% |
| !!! | ATAATGATGTCATTTTCTTT+GGG | + | chr1_4:60591967-60591986 | Msa0174820:intron | 20.0% |
| !! | AATACTAAAGAAATACGATA+AGG | + | chr1_4:60592300-60592319 | Msa0174820:CDS | 20.0% |
| !!! | TGAGTAAATATAGTTTTTTG+TGG | - | chr1_4:60592826-60592845 | None:intergenic | 20.0% |
| !! | AAAAGAAAAGAAAAAAGTGA+AGG | - | chr1_4:60593001-60593020 | None:intergenic | 20.0% |
| !! | TTTCAATGGTAAAAATTAAC+AGG | - | chr1_4:60593417-60593436 | None:intergenic | 20.0% |
| !!! | GTCTTTATTTATAGTGAAAA+AGG | - | chr1_4:60593587-60593606 | None:intergenic | 20.0% |
| !!! | TTTTCACTATAAATAAAGAC+TGG | + | chr1_4:60593587-60593606 | Msa0174820:intron | 20.0% |
| !! | TTTCACTATAAATAAAGACT+GGG | + | chr1_4:60593588-60593607 | Msa0174820:intron | 20.0% |
| !! | TTTCTTAAGAAATGTGAAAA+AGG | - | chr1_4:60593682-60593701 | None:intergenic | 20.0% |
| !! | ACAAGATAGTAGTATTAATT+AGG | + | chr1_4:60593799-60593818 | Msa0174820:intron | 20.0% |
| !! | CAAGATAGTAGTATTAATTA+GGG | + | chr1_4:60593800-60593819 | Msa0174820:intron | 20.0% |
| !! | AAGATAGTAGTATTAATTAG+GGG | + | chr1_4:60593801-60593820 | Msa0174820:intron | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | chr1_4:60593883-60593902 | Msa0174820:intron | 20.0% |
| !!! | AATTTTATACTGTTTATGAC+AGG | + | chr1_4:60593962-60593981 | Msa0174820:intron | 20.0% |
| !!! | GAAGAATTGAATATTTTGTT+AGG | + | chr1_4:60594014-60594033 | Msa0174820:intron | 20.0% |
| !!! | TGAATATTTTGTTAGGAAAA+AGG | + | chr1_4:60594021-60594040 | Msa0174820:intron | 20.0% |
| !! | TTTGAGATAGATATGATAAC+GGG | + | chr1_4:60589892-60589911 | Msa0174820:five_prime_UTR | 25.0% |
| ! | ATAATATGAACAAGGAAGAA+AGG | - | chr1_4:60589948-60589967 | None:intergenic | 25.0% |
| !!! | CTCTCATTAGTCATTTTTAT+TGG | + | chr1_4:60590374-60590393 | Msa0174820:intron | 25.0% |
| !! | CTCAAATTACTCCTTTTAAT+CGG | + | chr1_4:60590538-60590557 | Msa0174820:intron | 25.0% |
| ! | CTTGTTTAAGAATATGAGAA+TGG | + | chr1_4:60590798-60590817 | Msa0174820:intron | 25.0% |
| ! | CAATTTATTATTCTTTGCTC+AGG | + | chr1_4:60590920-60590939 | Msa0174820:intron | 25.0% |
| ! | TGGTGGAAAACATATAATTA+TGG | + | chr1_4:60591211-60591230 | Msa0174820:intron | 25.0% |
| ! | ATAGGTAATGCTTAATGAAA+AGG | + | chr1_4:60591576-60591595 | Msa0174820:intron | 25.0% |
| ! | TAGGTAATGCTTAATGAAAA+GGG | + | chr1_4:60591577-60591596 | Msa0174820:intron | 25.0% |
| !!! | AGAATTGTTTTTGAAGGAAT+TGG | + | chr1_4:60591626-60591645 | Msa0174820:intron | 25.0% |
| !!! | GAATTGTTTTTGAAGGAATT+GGG | + | chr1_4:60591627-60591646 | Msa0174820:intron | 25.0% |
| !!! | TTCAATTGTATTGATTGGAT+TGG | + | chr1_4:60591682-60591701 | Msa0174820:intron | 25.0% |
| ! | TTCTTATAATAGACTACAAG+CGG | - | chr1_4:60591901-60591920 | None:intergenic | 25.0% |
| ! | AATGAAATGTCAGAAATAGT+GGG | + | chr1_4:60592109-60592128 | Msa0174820:CDS | 25.0% |
| ! | TGTTGAAAGGAAAATCAAAA+AGG | + | chr1_4:60592203-60592222 | Msa0174820:CDS | 25.0% |
| ! | CATACTACTTTAATTCATGA+AGG | + | chr1_4:60592229-60592248 | Msa0174820:CDS | 25.0% |
| !! | TTTCTTTTGCATGCTAATTT+TGG | + | chr1_4:60592341-60592360 | Msa0174820:intron | 25.0% |
| ! | AGATTCATTATTCTAAGCAA+GGG | + | chr1_4:60592415-60592434 | Msa0174820:intron | 25.0% |
| !! | CAGATCAATATCAATTTTGA+TGG | - | chr1_4:60592634-60592653 | None:intergenic | 25.0% |
| ! | TTGTATTGAAATTGTAAACC+AGG | + | chr1_4:60592785-60592804 | Msa0174820:intron | 25.0% |
| ! | ATAGTTTCAAATATGTGACA+TGG | + | chr1_4:60592862-60592881 | Msa0174820:intron | 25.0% |
| ! | GGAAAATATTGAACAACATA+AGG | - | chr1_4:60592911-60592930 | None:intergenic | 25.0% |
| !! | TCAATATTTTCCTAACCAAT+TGG | + | chr1_4:60592919-60592938 | Msa0174820:intron | 25.0% |
| !! | AGAAAAGTATACTGATAATG+TGG | - | chr1_4:60592952-60592971 | None:intergenic | 25.0% |
| ! | AGAAGTTATTGATGTAAGAA+TGG | - | chr1_4:60593240-60593259 | None:intergenic | 25.0% |
| ! | AAGAAGATCTTAAGTTTCAA+TGG | - | chr1_4:60593431-60593450 | None:intergenic | 25.0% |
| !!! | CAGAACTGTTTACTTATTTT+AGG | + | chr1_4:60593525-60593544 | Msa0174820:intron | 25.0% |
| ! | TTCACTATAAATAAAGACTG+GGG | + | chr1_4:60593589-60593608 | Msa0174820:intron | 25.0% |
| ! | TTTAATGCACATACAAACAA+AGG | - | chr1_4:60593758-60593777 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | + | chr1_4:60593811-60593830 | Msa0174820:intron | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr1_4:60593847-60593866 | Msa0174820:intron | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | chr1_4:60593848-60593867 | Msa0174820:intron | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr1_4:60593882-60593901 | Msa0174820:intron | 25.0% |
| ! | AATATAACACCACAATTAAG+AGG | - | chr1_4:60594131-60594150 | None:intergenic | 25.0% |
| ! | AATTATAAGGTTAAGACACT+TGG | - | chr1_4:60594174-60594193 | None:intergenic | 25.0% |
| !! | AAAGTAAAGGCTTTTTACTT+TGG | + | chr1_4:60594441-60594460 | Msa0174820:three_prime_UTR | 25.0% |
| ! | ATACACTAGCCAAAAATAAA+TGG | - | chr1_4:60594483-60594502 | None:intergenic | 25.0% |
| ! | TTGAGATAGATATGATAACG+GGG | + | chr1_4:60589893-60589912 | Msa0174820:five_prime_UTR | 30.0% |
| GGAAGTGAATAATATGAACA+AGG | - | chr1_4:60589956-60589975 | None:intergenic | 30.0% | |
| TAAAAACATCAGAGAGAAAG+AGG | - | chr1_4:60590028-60590047 | None:intergenic | 30.0% | |
| !! | ATTAATCGAAATGATGGGTT+CGG | - | chr1_4:60590214-60590233 | None:intergenic | 30.0% |
| ATATATTCACGATCCAATTC+AGG | + | chr1_4:60590327-60590346 | Msa0174820:intron | 30.0% | |
| AAGACTAATGTCCGATTAAA+AGG | - | chr1_4:60590552-60590571 | None:intergenic | 30.0% | |
| ! | TAGTCTTAAATTTGTCCTGA+AGG | + | chr1_4:60590565-60590584 | Msa0174820:intron | 30.0% |
| ! | TTATTATCAATTTTGTGGGG+AGG | + | chr1_4:60590600-60590619 | Msa0174820:intron | 30.0% |
| ! | TATTATCAATTTTGTGGGGA+GGG | + | chr1_4:60590601-60590620 | Msa0174820:intron | 30.0% |
| ACATATTAAACTGCTCACTA+AGG | - | chr1_4:60590633-60590652 | None:intergenic | 30.0% | |
| TATGTTATTCACTAGTACTG+TGG | + | chr1_4:60590648-60590667 | Msa0174820:intron | 30.0% | |
| TTTATTATTCTTTGCTCAGG+AGG | + | chr1_4:60590923-60590942 | Msa0174820:intron | 30.0% | |
| !!! | TGTCGATGGTTGTTTTAAAA+TGG | + | chr1_4:60591005-60591024 | Msa0174820:intron | 30.0% |
| !!! | ATGGTTGTTTTAAAATGGCT+GGG | + | chr1_4:60591010-60591029 | Msa0174820:intron | 30.0% |
| !!! | AGAGCATCGATAATTTTGTA+TGG | + | chr1_4:60591118-60591137 | Msa0174820:intron | 30.0% |
| ! | TAATTTTGTATGGTTGTGTG+TGG | + | chr1_4:60591128-60591147 | Msa0174820:intron | 30.0% |
| TGTGGAAAATTTGCAAAGTA+TGG | + | chr1_4:60591146-60591165 | Msa0174820:intron | 30.0% | |
| AAAATTTGCAAAGTATGGCA+TGG | + | chr1_4:60591151-60591170 | Msa0174820:intron | 30.0% | |
| TTGGTTAGATGGTAAGATTA+AGG | + | chr1_4:60591241-60591260 | Msa0174820:intron | 30.0% | |
| TGGTTAGATGGTAAGATTAA+GGG | + | chr1_4:60591242-60591261 | Msa0174820:intron | 30.0% | |
| ATGGTAAGATTAAGGGATTT+GGG | + | chr1_4:60591249-60591268 | Msa0174820:intron | 30.0% | |
| !! | ATTGGTTTGATAAACATGCA+TGG | + | chr1_4:60591529-60591548 | Msa0174820:intron | 30.0% |
| ATCAGAACTTCAGAAGAAAA+TGG | + | chr1_4:60591552-60591571 | Msa0174820:intron | 30.0% | |
| ACTTCAGAAGAAAATGGTAT+AGG | + | chr1_4:60591558-60591577 | Msa0174820:intron | 30.0% | |
| !!! | AGCAGAAGAATTGTTTTTGA+AGG | + | chr1_4:60591620-60591639 | Msa0174820:intron | 30.0% |
| !! | ACTGTTAAGTGCTATTTAGA+CGG | + | chr1_4:60591654-60591673 | Msa0174820:intron | 30.0% |
| !! | ATTGTAGAATTTGTTGCACA+AGG | + | chr1_4:60591738-60591757 | Msa0174820:intron | 30.0% |
| ACTTCACTAATTAACTCTGA+TGG | - | chr1_4:60591778-60591797 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTGGGTACAGATT+GGG | + | chr1_4:60591978-60591997 | Msa0174820:intron | 30.0% |
| ! | ATTACACTATGTTAGCTTAG+AGG | - | chr1_4:60592045-60592064 | None:intergenic | 30.0% |
| !! | TTATTTTATTCAGTGTGCGA+TGG | + | chr1_4:60592064-60592083 | Msa0174820:intron | 30.0% |
| ! | TATTTTATTCAGTGTGCGAT+GGG | + | chr1_4:60592065-60592084 | Msa0174820:intron | 30.0% |
| TTCTGACATTTCATTGAGAA+GGG | - | chr1_4:60592104-60592123 | None:intergenic | 30.0% | |
| TTTCTGACATTTCATTGAGA+AGG | - | chr1_4:60592105-60592124 | None:intergenic | 30.0% | |
| CAATGAAATGTCAGAAATAG+TGG | + | chr1_4:60592108-60592127 | Msa0174820:CDS | 30.0% | |
| TCAACATGAGAATGTACTTT+CGG | - | chr1_4:60592189-60592208 | None:intergenic | 30.0% | |
| AAGTACATTCTCATGTTGAA+AGG | + | chr1_4:60592190-60592209 | Msa0174820:CDS | 30.0% | |
| CAGATTCATTATTCTAAGCA+AGG | + | chr1_4:60592414-60592433 | Msa0174820:intron | 30.0% | |
| TGGCATTACATATCAATCTA+AGG | + | chr1_4:60592508-60592527 | Msa0174820:CDS | 30.0% | |
| GGCATTACATATCAATCTAA+GGG | + | chr1_4:60592509-60592528 | Msa0174820:CDS | 30.0% | |
| ! | TTTGTACATGACTCTCATTT+TGG | + | chr1_4:60592712-60592731 | Msa0174820:intron | 30.0% |
| ! | TTTTGTGGAACCATAAAACT+AGG | - | chr1_4:60592811-60592830 | None:intergenic | 30.0% |
| CATCTGTTACTATTGTTGAT+GGG | + | chr1_4:60593128-60593147 | Msa0174820:CDS | 30.0% | |
| AAATTAACAGGCCTTAACAA+AGG | - | chr1_4:60593405-60593424 | None:intergenic | 30.0% | |
| GAAGCTAAACAATTACAGAA+GGG | - | chr1_4:60593469-60593488 | None:intergenic | 30.0% | |
| AGAAGCTAAACAATTACAGA+AGG | - | chr1_4:60593470-60593489 | None:intergenic | 30.0% | |
| ! | TTCTGTAATTGTTTAGCTTC+TGG | + | chr1_4:60593469-60593488 | Msa0174820:intron | 30.0% |
| GCTGAATAAGTATAATTGAG+CGG | + | chr1_4:60593557-60593576 | Msa0174820:intron | 30.0% | |
| AGAAATGTGAAAAAGGCAAT+GGG | - | chr1_4:60593675-60593694 | None:intergenic | 30.0% | |
| AAGAAATGTGAAAAAGGCAA+TGG | - | chr1_4:60593676-60593695 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | chr1_4:60593849-60593868 | Msa0174820:intron | 30.0% | |
| TTGAAAAGGGGTTTACATTT+AGG | + | chr1_4:60593861-60593880 | Msa0174820:intron | 30.0% | |
| TGAAAAGGGGTTTACATTTA+GGG | + | chr1_4:60593862-60593881 | Msa0174820:intron | 30.0% | |
| ! | CATTTTCACAAGATTGTTGA+AGG | + | chr1_4:60594396-60594415 | Msa0174820:three_prime_UTR | 30.0% |
| !! | ACCTAAAGGCCATTTATTTT+TGG | + | chr1_4:60594471-60594490 | Msa0174820:three_prime_UTR | 30.0% |
| AACAAGGAAGAAAGGATATG+GGG | - | chr1_4:60589940-60589959 | None:intergenic | 35.0% | |
| GAACAAGGAAGAAAGGATAT+GGG | - | chr1_4:60589941-60589960 | None:intergenic | 35.0% | |
| TGAACAAGGAAGAAAGGATA+TGG | - | chr1_4:60589942-60589961 | None:intergenic | 35.0% | |
| TTGAATGAAGGAACCTGAAT+TGG | - | chr1_4:60590343-60590362 | None:intergenic | 35.0% | |
| TTTGACACGTGATTCATGAT+TGG | + | chr1_4:60590403-60590422 | Msa0174820:intron | 35.0% | |
| ! | ATTATCAATTTTGTGGGGAG+GGG | + | chr1_4:60590602-60590621 | Msa0174820:intron | 35.0% |
| ! | GTTGGTAAATGATAACCTCT+TGG | - | chr1_4:60590893-60590912 | None:intergenic | 35.0% |
| TTGAGTACTCGAAATTGTCA+AGG | + | chr1_4:60590981-60591000 | Msa0174820:intron | 35.0% | |
| TGAGTACTCGAAATTGTCAA+GGG | + | chr1_4:60590982-60591001 | Msa0174820:intron | 35.0% | |
| !!! | GATGGTTGTTTTAAAATGGC+TGG | + | chr1_4:60591009-60591028 | Msa0174820:intron | 35.0% |
| AAATGATCGCTGCTGTTATT+TGG | - | chr1_4:60591052-60591071 | None:intergenic | 35.0% | |
| !! | TGATTGCAAGACTGTTTTGA+GGG | + | chr1_4:60591077-60591096 | Msa0174820:intron | 35.0% |
| !! | GTGGAGTGTTTTGTAATAAG+AGG | + | chr1_4:60591173-60591192 | Msa0174820:intron | 35.0% |
| ! | GAGTGTTTTGTAATAAGAGG+AGG | + | chr1_4:60591176-60591195 | Msa0174820:intron | 35.0% |
| ATGGTGTGAAATTGGTTAGA+TGG | + | chr1_4:60591230-60591249 | Msa0174820:intron | 35.0% | |
| GATGGTAAGATTAAGGGATT+TGG | + | chr1_4:60591248-60591267 | Msa0174820:intron | 35.0% | |
| CAGTGAATTTGAAAACCACT+GGG | - | chr1_4:60591285-60591304 | None:intergenic | 35.0% | |
| AGAAAATAGTAGCAGGGATT+TGG | + | chr1_4:60591320-60591339 | Msa0174820:intron | 35.0% | |
| TTTCTGCATAACAGTCATAC+TGG | + | chr1_4:60591360-60591379 | Msa0174820:intron | 35.0% | |
| !! | TACTGGTATGCTTGATTTGT+AGG | + | chr1_4:60591377-60591396 | Msa0174820:intron | 35.0% |
| !! | ACTGGTATGCTTGATTTGTA+GGG | + | chr1_4:60591378-60591397 | Msa0174820:intron | 35.0% |
| GTTATGAAGCTATACCGTTA+AGG | + | chr1_4:60591407-60591426 | Msa0174820:intron | 35.0% | |
| ! | TGAGTGTTACTCGTCTTAAT+TGG | + | chr1_4:60591511-60591530 | Msa0174820:intron | 35.0% |
| !! | CTGTTAAGTGCTATTTAGAC+GGG | + | chr1_4:60591655-60591674 | Msa0174820:intron | 35.0% |
| TCACTAATTAACTCTGATGG+AGG | - | chr1_4:60591775-60591794 | None:intergenic | 35.0% | |
| ATTTAGTCACTGAAGCTGAA+GGG | - | chr1_4:60591871-60591890 | None:intergenic | 35.0% | |
| AATTTAGTCACTGAAGCTGA+AGG | - | chr1_4:60591872-60591891 | None:intergenic | 35.0% | |
| ! | CATTTTCTTTGGGTACAGAT+TGG | + | chr1_4:60591977-60591996 | Msa0174820:intron | 35.0% |
| ! | TTTTCTTTGGGTACAGATTG+GGG | + | chr1_4:60591979-60591998 | Msa0174820:intron | 35.0% |
| ! | TATGTTAGCTTAGAGGTAGT+GGG | - | chr1_4:60592038-60592057 | None:intergenic | 35.0% |
| ACATTTCATTGAGAAGGGAA+GGG | - | chr1_4:60592099-60592118 | None:intergenic | 35.0% | |
| AATTTCCTTGTGCATAGTCT+GGG | - | chr1_4:60592460-60592479 | None:intergenic | 35.0% | |
| AACTAAAGACAAGTCAAGGA+AGG | + | chr1_4:60592533-60592552 | Msa0174820:CDS | 35.0% | |
| AAGGCAACCACATTATTCAA+TGG | + | chr1_4:60592552-60592571 | Msa0174820:CDS | 35.0% | |
| ACAGCATCCATTGAATAATG+TGG | - | chr1_4:60592562-60592581 | None:intergenic | 35.0% | |
| !! | TCTGACTTGCTCTATATGTT+TGG | + | chr1_4:60592650-60592669 | Msa0174820:CDS | 35.0% |
| TTGAACAACATAAGGAGATC+TGG | - | chr1_4:60592903-60592922 | None:intergenic | 35.0% | |
| !! | GTGAAAGTGTCTCTCTTATA+AGG | + | chr1_4:60592974-60592993 | Msa0174820:intron | 35.0% |
| GCATCTGTTACTATTGTTGA+TGG | + | chr1_4:60593127-60593146 | Msa0174820:CDS | 35.0% | |
| !! | TACTATTGTTGATGGGCTTA+AGG | + | chr1_4:60593135-60593154 | Msa0174820:CDS | 35.0% |
| TAATGAGATCCTACTGCATA+TGG | - | chr1_4:60593207-60593226 | None:intergenic | 35.0% | |
| TCAAATGGGTGCTTAGATAT+AGG | + | chr1_4:60593897-60593916 | Msa0174820:intron | 35.0% | |
| CAAATGGGTGCTTAGATATA+GGG | + | chr1_4:60593898-60593917 | Msa0174820:intron | 35.0% | |
| TTATACTGTTTATGACAGGC+AGG | + | chr1_4:60593966-60593985 | Msa0174820:intron | 35.0% | |
| GATCGAAAACAGACTCTAAA+TGG | - | chr1_4:60594109-60594128 | None:intergenic | 35.0% | |
| ! | GTTTTCGATCCTCTTAATTG+TGG | + | chr1_4:60594119-60594138 | Msa0174820:intron | 35.0% |
| TCAATATGTTTACAGCTGCA+AGG | + | chr1_4:60594194-60594213 | Msa0174820:intron | 35.0% | |
| ACCAGAATCGATCAAAGTAA+AGG | + | chr1_4:60594428-60594447 | Msa0174820:three_prime_UTR | 35.0% | |
| GCCAAAAATAAATGGCCTTT+AGG | - | chr1_4:60594475-60594494 | None:intergenic | 35.0% | |
| ATCCTAACATGAACATAGCA+AGG | + | chr1_4:60594549-60594568 | Msa0174820:three_prime_UTR | 35.0% | |
| ! | TTCCTTGCTATGTTCATGTT+AGG | - | chr1_4:60594554-60594573 | None:intergenic | 35.0% |
| ! | ATCATACATGTTTTGTCCTG+TGG | - | chr1_4:60594580-60594599 | None:intergenic | 35.0% |
| GAAGAAAGGATATGGGGTTT+GGG | - | chr1_4:60589934-60589953 | None:intergenic | 40.0% | |
| GCTTCTTGAATCCAACTACA+GGG | - | chr1_4:60590114-60590133 | None:intergenic | 40.0% | |
| AGCTTCTTGAATCCAACTAC+AGG | - | chr1_4:60590115-60590134 | None:intergenic | 40.0% | |
| ATTGATCAGGACAAGGTTTG+TGG | - | chr1_4:60590177-60590196 | None:intergenic | 40.0% | |
| ! | TTATCAATTTTGTGGGGAGG+GGG | + | chr1_4:60590603-60590622 | Msa0174820:intron | 40.0% |
| ATTCACTAGTACTGTGGCAA+AGG | + | chr1_4:60590654-60590673 | Msa0174820:intron | 40.0% | |
| ATGTGTACAAGATGCATGGA+GGG | + | chr1_4:60590692-60590711 | Msa0174820:intron | 40.0% | |
| TTCTCAGGCACATACAAGTA+AGG | - | chr1_4:60590739-60590758 | None:intergenic | 40.0% | |
| TACTTGTATGTGCCTGAGAA+TGG | + | chr1_4:60590739-60590758 | Msa0174820:intron | 40.0% | |
| AGAATATGAGAATGGACGTG+TGG | + | chr1_4:60590806-60590825 | Msa0174820:intron | 40.0% | |
| AGGCAGTGTATAAGGAGATA+TGG | + | chr1_4:60590866-60590885 | Msa0174820:intron | 40.0% | |
| GGCAGTGTATAAGGAGATAT+GGG | + | chr1_4:60590867-60590886 | Msa0174820:intron | 40.0% | |
| ! | CTGATTGCAAGACTGTTTTG+AGG | + | chr1_4:60591076-60591095 | Msa0174820:intron | 40.0% |
| ATTTGCAAAGTATGGCATGG+TGG | + | chr1_4:60591154-60591173 | Msa0174820:intron | 40.0% | |
| ! | AGAGGAGGATGTAATTTTCG+TGG | + | chr1_4:60591191-60591210 | Msa0174820:intron | 40.0% |
| GCAGTGAATTTGAAAACCAC+TGG | - | chr1_4:60591286-60591305 | None:intergenic | 40.0% | |
| TTCAAATTCACTGCTATGCC+TGG | + | chr1_4:60591292-60591311 | Msa0174820:intron | 40.0% | |
| TCAAATTCACTGCTATGCCT+GGG | + | chr1_4:60591293-60591312 | Msa0174820:intron | 40.0% | |
| GGCTTGAGAAAATAGTAGCA+GGG | + | chr1_4:60591314-60591333 | Msa0174820:intron | 40.0% | |
| AAATAGTAGCAGGGATTTGG+TGG | + | chr1_4:60591323-60591342 | Msa0174820:intron | 40.0% | |
| !! | CTGGTATGCTTGATTTGTAG+GGG | + | chr1_4:60591379-60591398 | Msa0174820:intron | 40.0% |
| TTTCTTTGGGTACAGATTGG+GGG | + | chr1_4:60591980-60591999 | Msa0174820:intron | 40.0% | |
| ! | CTATGTTAGCTTAGAGGTAG+TGG | - | chr1_4:60592039-60592058 | None:intergenic | 40.0% |
| ATTGAGAAGGGAAGGGAAAA+AGG | - | chr1_4:60592092-60592111 | None:intergenic | 40.0% | |
| GACATTTCATTGAGAAGGGA+AGG | - | chr1_4:60592100-60592119 | None:intergenic | 40.0% | |
| GAATTTCCTTGTGCATAGTC+TGG | - | chr1_4:60592461-60592480 | None:intergenic | 40.0% | |
| GGGAAACTAAAGACAAGTCA+AGG | + | chr1_4:60592529-60592548 | Msa0174820:CDS | 40.0% | |
| TGGATGCTGTCTCACATTTA+AGG | + | chr1_4:60592572-60592591 | Msa0174820:CDS | 40.0% | |
| TGCTGTCTCACATTTAAGGA+TGG | + | chr1_4:60592576-60592595 | Msa0174820:CDS | 40.0% | |
| !!! | GTAAACCAGGCCTAGTTTTA+TGG | + | chr1_4:60592798-60592817 | Msa0174820:intron | 40.0% |
| CACAACTGTAGCAGAATATG+TGG | - | chr1_4:60593096-60593115 | None:intergenic | 40.0% | |
| TTGAAAGACCAGTTGAGCTT+AGG | - | chr1_4:60593350-60593369 | None:intergenic | 40.0% | |
| AATTTGCCCGACCTTTGTTA+AGG | + | chr1_4:60593391-60593410 | Msa0174820:intron | 40.0% | |
| TAACAGGCCTTAACAAAGGT+CGG | - | chr1_4:60593401-60593420 | None:intergenic | 40.0% | |
| AGACTGGGGATGTTAAGAAT+TGG | + | chr1_4:60593603-60593622 | Msa0174820:intron | 40.0% | |
| AATGTGAAAAAGGCAATGGG+TGG | - | chr1_4:60593672-60593691 | None:intergenic | 40.0% | |
| !! | TTATGAAGGTGCTGTACACT+TGG | + | chr1_4:60593992-60594011 | Msa0174820:intron | 40.0% |
| TTCAGATGGAAAGAGTAGAG+AGG | + | chr1_4:60594235-60594254 | Msa0174820:CDS | 40.0% | |
| TCAGATGGAAAGAGTAGAGA+GGG | + | chr1_4:60594236-60594255 | Msa0174820:CDS | 40.0% | |
| TAGAGAAGCAAACCTCACTT+GGG | + | chr1_4:60594316-60594335 | Msa0174820:three_prime_UTR | 40.0% | |
| ! | GCCTTTACTTTGATCGATTC+TGG | - | chr1_4:60594432-60594451 | None:intergenic | 40.0% |
| ACTTTGGCATCTGTACCTAA+AGG | + | chr1_4:60594457-60594476 | Msa0174820:three_prime_UTR | 40.0% | |
| ATGTTCATGTTAGGATACGC+TGG | - | chr1_4:60594545-60594564 | None:intergenic | 40.0% | |
| ACATAGCAAGGAAAAACCAC+AGG | + | chr1_4:60594561-60594580 | Msa0174820:three_prime_UTR | 40.0% | |
| ! | AGGATATGGGGTTTGGGTTT+GGG | - | chr1_4:60589928-60589947 | None:intergenic | 45.0% |
| ! | AAGGATATGGGGTTTGGGTT+TGG | - | chr1_4:60589929-60589948 | None:intergenic | 45.0% |
| GGAAGAAAGGATATGGGGTT+TGG | - | chr1_4:60589935-60589954 | None:intergenic | 45.0% | |
| AGAGAAAGAGAAACAGCGCA+CGG | - | chr1_4:60589977-60589996 | None:intergenic | 45.0% | |
| GAAGTTCTGCAAGACCTATC+AGG | + | chr1_4:60590057-60590076 | Msa0174820:CDS | 45.0% | |
| AGCTCGCATGTATTCCTGAT+AGG | - | chr1_4:60590074-60590093 | None:intergenic | 45.0% | |
| GATGTGTACAAGATGCATGG+AGG | + | chr1_4:60590691-60590710 | Msa0174820:intron | 45.0% | |
| GAGGAGGGAGTCATTTCATT+TGG | + | chr1_4:60590767-60590786 | Msa0174820:intron | 45.0% | |
| ATATGAGAATGGACGTGTGG+AGG | + | chr1_4:60590809-60590828 | Msa0174820:intron | 45.0% | |
| AGATGGGATCTACTCTGTGA+AGG | + | chr1_4:60590846-60590865 | Msa0174820:intron | 45.0% | |
| CTCTGTGAAGGCAGTGTATA+AGG | + | chr1_4:60590858-60590877 | Msa0174820:intron | 45.0% | |
| ATAAGGAGATATGGGCCAAG+AGG | + | chr1_4:60590875-60590894 | Msa0174820:intron | 45.0% | |
| !! | GAAATTGTCAAGGGTGTCGA+TGG | + | chr1_4:60590991-60591010 | Msa0174820:intron | 45.0% |
| ! | GCTGCTGTTATTTGGTAGCA+CGG | - | chr1_4:60591044-60591063 | None:intergenic | 45.0% |
| ! | GGAGGATGTAATTTTCGTGG+TGG | + | chr1_4:60591194-60591213 | Msa0174820:intron | 45.0% |
| ! | GCTACTATTTTCTCAAGCCC+AGG | - | chr1_4:60591313-60591332 | None:intergenic | 45.0% |
| GGGCTTGAGAAAATAGTAGC+AGG | + | chr1_4:60591313-60591332 | Msa0174820:intron | 45.0% | |
| TGAAGCTATACCGTTAAGGC+TGG | + | chr1_4:60591411-60591430 | Msa0174820:intron | 45.0% | |
| GAAGCTATACCGTTAAGGCT+GGG | + | chr1_4:60591412-60591431 | Msa0174820:intron | 45.0% | |
| TTCGACCTGTCTACGAAAAC+TGG | - | chr1_4:60591451-60591470 | None:intergenic | 45.0% | |
| AGGAAATTCTTCAGAGTCCC+TGG | + | chr1_4:60592472-60592491 | Msa0174820:CDS | 45.0% | |
| AAGAGCTCACAAGCAAGTGA+TGG | - | chr1_4:60592606-60592625 | None:intergenic | 45.0% | |
| TGGAACCATAAAACTAGGCC+TGG | - | chr1_4:60592806-60592825 | None:intergenic | 45.0% | |
| TAATGTGGAACTGCGCCAAT+TGG | - | chr1_4:60592937-60592956 | None:intergenic | 45.0% | |
| !! | TAATCTGGCTCTTCCATGAC+AGG | + | chr1_4:60593036-60593055 | Msa0174820:intron | 45.0% |
| TCAAACACTGTGTCCTGTCA+TGG | - | chr1_4:60593052-60593071 | None:intergenic | 45.0% | |
| ! | GATCCAGTTTCTCTGACTTG+TGG | + | chr1_4:60593070-60593089 | Msa0174820:CDS | 45.0% |
| AAAATGTCCTATGTGCCGAG+AGG | + | chr1_4:60593174-60593193 | Msa0174820:CDS | 45.0% | |
| GCATATGGTAGCTTACCTCT+CGG | - | chr1_4:60593192-60593211 | None:intergenic | 45.0% | |
| GGTAAGCTACCATATGCAGT+AGG | + | chr1_4:60593195-60593214 | Msa0174820:intron | 45.0% | |
| GCAGTAGGATCTCATTAGAG+TGG | + | chr1_4:60593210-60593229 | Msa0174820:intron | 45.0% | |
| AACAGGCCTTAACAAAGGTC+GGG | - | chr1_4:60593400-60593419 | None:intergenic | 45.0% | |
| GCAATGGGTGGCTACATTAA+GGG | - | chr1_4:60593660-60593679 | None:intergenic | 45.0% | |
| TGGGTGCTTAGATATAGGGA+CGG | + | chr1_4:60593902-60593921 | Msa0174820:intron | 45.0% | |
| TGCTTAGATATAGGGACGGA+GGG | + | chr1_4:60593906-60593925 | Msa0174820:intron | 45.0% | |
| TGACAGGCAGGAGTTTATGA+AGG | + | chr1_4:60593978-60593997 | Msa0174820:intron | 45.0% | |
| ! | TTTACAGCTGCAAGGAGTAC+TGG | + | chr1_4:60594202-60594221 | Msa0174820:intron | 45.0% |
| !! | TTACAGCTGCAAGGAGTACT+GGG | + | chr1_4:60594203-60594222 | Msa0174820:intron | 45.0% |
| GTAGAGAAGCAAACCTCACT+TGG | + | chr1_4:60594315-60594334 | Msa0174820:three_prime_UTR | 45.0% | |
| CAAACCTCACTTGGGTTCAA+TGG | + | chr1_4:60594324-60594343 | Msa0174820:three_prime_UTR | 45.0% | |
| TACACCATTGAACCCAAGTG+AGG | - | chr1_4:60594331-60594350 | None:intergenic | 45.0% | |
| GCTGGATAATGCATTCTCTC+TGG | - | chr1_4:60594527-60594546 | None:intergenic | 45.0% | |
| !!! | ATTATTTTGTTTTAATTTTA+CGG | + | chr1_4:60590232-60590251 | Msa0174820:intron | 5.0% |
| TCAGGAATACATGCGAGCTC+AGG | + | chr1_4:60590075-60590094 | Msa0174820:CDS | 50.0% | |
| CAGAAGAAGCTCCCTGTAGT+TGG | + | chr1_4:60590100-60590119 | Msa0174820:CDS | 50.0% | |
| !! | CATGGGCATTGATCAGGACA+AGG | - | chr1_4:60590184-60590203 | None:intergenic | 50.0% |
| !! | GACGTACATGGGCATTGATC+AGG | - | chr1_4:60590190-60590209 | None:intergenic | 50.0% |
| !! | ATGGGTTCGGTGACGTACAT+GGG | - | chr1_4:60590201-60590220 | None:intergenic | 50.0% |
| GCGGATGTGTACAAGATGCA+TGG | + | chr1_4:60590688-60590707 | Msa0174820:intron | 50.0% | |
| TATGTGCCTGAGAATGGAGC+TGG | + | chr1_4:60590745-60590764 | Msa0174820:intron | 50.0% | |
| TTGGGTATGACATCTCCCAG+TGG | + | chr1_4:60591267-60591286 | Msa0174820:intron | 50.0% | |
| !! | TGCTTGATTTGTAGGGGCTG+CGG | + | chr1_4:60591385-60591404 | Msa0174820:intron | 50.0% |
| ! | CGTTGCCAGTTTTCGTAGAC+AGG | + | chr1_4:60591443-60591462 | Msa0174820:intron | 50.0% |
| TTCGTAGACAGGTCGAACCT+TGG | + | chr1_4:60591454-60591473 | Msa0174820:intron | 50.0% | |
| ACAGGTCGAACCTTGGTTTC+TGG | + | chr1_4:60591461-60591480 | Msa0174820:intron | 50.0% | |
| !! | ACCTTGGTTTCTGGCATCAG+TGG | + | chr1_4:60591470-60591489 | Msa0174820:intron | 50.0% |
| TCCACTGATGCCAGAAACCA+AGG | - | chr1_4:60591474-60591493 | None:intergenic | 50.0% | |
| TGGCATCAGTGGAAGTGAGA+TGG | + | chr1_4:60591481-60591500 | Msa0174820:intron | 50.0% | |
| CATCAGTGGAAGTGAGATGG+TGG | + | chr1_4:60591484-60591503 | Msa0174820:intron | 50.0% | |
| !! | AGTGGAAGTGAGATGGTGGA+GGG | + | chr1_4:60591488-60591507 | Msa0174820:intron | 50.0% |
| ! | AGCTGAAGGGTCGGTCATTT+TGG | - | chr1_4:60591858-60591877 | None:intergenic | 50.0% |
| AGTCACTGAAGCTGAAGGGT+CGG | - | chr1_4:60591867-60591886 | None:intergenic | 50.0% | |
| CTGGAACGACATCTTGCTTC+TGG | + | chr1_4:60592160-60592179 | Msa0174820:CDS | 50.0% | |
| ACAAGCCCAGACTATGCACA+AGG | + | chr1_4:60592452-60592471 | Msa0174820:CDS | 50.0% | |
| TCCCTGGCTTATTGAGCTGA+TGG | + | chr1_4:60592488-60592507 | Msa0174820:CDS | 50.0% | |
| GCCATCAGCTCAATAAGCCA+GGG | - | chr1_4:60592492-60592511 | None:intergenic | 50.0% | |
| TGCCATCAGCTCAATAAGCC+AGG | - | chr1_4:60592493-60592512 | None:intergenic | 50.0% | |
| TGGAACTGCGCCAATTGGTT+AGG | - | chr1_4:60592932-60592951 | None:intergenic | 50.0% | |
| TGGCCACAAGTCAGAGAAAC+TGG | - | chr1_4:60593076-60593095 | None:intergenic | 50.0% | |
| TAGCTTACCTCTCGGCACAT+AGG | - | chr1_4:60593184-60593203 | None:intergenic | 50.0% | |
| TGTGCATCAGACCAAGAACC+AGG | + | chr1_4:60593317-60593336 | Msa0174820:intron | 50.0% | |
| ! | TAGGACAGGATCCTGGTTCT+TGG | - | chr1_4:60593331-60593350 | None:intergenic | 50.0% |
| TTGAGCTTAGGACAGGATCC+TGG | - | chr1_4:60593338-60593357 | None:intergenic | 50.0% | |
| GATCCTGTCCTAAGCTCAAC+TGG | + | chr1_4:60593339-60593358 | Msa0174820:intron | 50.0% | |
| AGACCAGTTGAGCTTAGGAC+AGG | - | chr1_4:60593345-60593364 | None:intergenic | 50.0% | |
| AAGGGACGGAGGGAGTAATA+AGG | - | chr1_4:60593642-60593661 | None:intergenic | 50.0% | |
| TGGCTACATTAAGGGACGGA+GGG | - | chr1_4:60593652-60593671 | None:intergenic | 50.0% | |
| TGGGTGGCTACATTAAGGGA+CGG | - | chr1_4:60593656-60593675 | None:intergenic | 50.0% | |
| GGCAATGGGTGGCTACATTA+AGG | - | chr1_4:60593661-60593680 | None:intergenic | 50.0% | |
| GTGCTTAGATATAGGGACGG+AGG | + | chr1_4:60593905-60593924 | Msa0174820:intron | 50.0% | |
| CTGGGAGGAAAGACTTCAGA+TGG | + | chr1_4:60594221-60594240 | Msa0174820:CDS | 50.0% | |
| AGAGAGGGTCAAGCAAGCAA+AGG | + | chr1_4:60594251-60594270 | Msa0174820:CDS | 50.0% | |
| ! | TCAAGCAAGCAAAGGAGCAC+TGG | + | chr1_4:60594259-60594278 | Msa0174820:CDS | 50.0% |
| !! | CAAGCAAGCAAAGGAGCACT+GGG | + | chr1_4:60594260-60594279 | Msa0174820:CDS | 50.0% |
| ! | AACGCAGTGTAGAGCGTTCA+TGG | + | chr1_4:60594284-60594303 | Msa0174820:exon | 50.0% |
| ! | ACGCAGTGTAGAGCGTTCAT+GGG | + | chr1_4:60594285-60594304 | Msa0174820:exon | 50.0% |
| !! | GATGGGTTCGGTGACGTACA+TGG | - | chr1_4:60590202-60590221 | None:intergenic | 55.0% |
| GGCAAAGGATGCAGCAGTAG+CGG | + | chr1_4:60590669-60590688 | Msa0174820:intron | 55.0% | |
| CTGAGAATGGAGCTGGAGGA+GGG | + | chr1_4:60590752-60590771 | Msa0174820:intron | 55.0% | |
| TGAGAATGGACGTGTGGAGG+TGG | + | chr1_4:60590812-60590831 | Msa0174820:intron | 55.0% | |
| AATGGACGTGTGGAGGTGGT+TGG | + | chr1_4:60590816-60590835 | Msa0174820:intron | 55.0% | |
| AGGTGGTTGGAAGAGGCAGA+TGG | + | chr1_4:60590829-60590848 | Msa0174820:intron | 55.0% | |
| GGTGGTTGGAAGAGGCAGAT+GGG | + | chr1_4:60590830-60590849 | Msa0174820:intron | 55.0% | |
| !! | AGTAGCAGGGATTTGGTGGC+AGG | + | chr1_4:60591327-60591346 | Msa0174820:intron | 55.0% |
| !! | GTAGCAGGGATTTGGTGGCA+GGG | + | chr1_4:60591328-60591347 | Msa0174820:intron | 55.0% |
| !!! | GGGATTTGGTGGCAGGGTTT+TGG | + | chr1_4:60591334-60591353 | Msa0174820:intron | 55.0% |
| ! | GAGCTTGCTCCCAGCCTTAA+CGG | - | chr1_4:60591424-60591443 | None:intergenic | 55.0% |
| ! | CAGTGGAAGTGAGATGGTGG+AGG | + | chr1_4:60591487-60591506 | Msa0174820:intron | 55.0% |
| TCAGCGTGCACAGAAACTGC+TGG | + | chr1_4:60592141-60592160 | Msa0174820:CDS | 55.0% | |
| GTGGCTACATTAAGGGACGG+AGG | - | chr1_4:60593653-60593672 | None:intergenic | 55.0% | |
| GTGCCTGAGAATGGAGCTGG+AGG | + | chr1_4:60590748-60590767 | Msa0174820:intron | 60.0% | |
| CCTCCTCCAGCTCCATTCTC+AGG | - | chr1_4:60590754-60590773 | None:intergenic | 60.0% | |
| CCTGAGAATGGAGCTGGAGG+AGG | + | chr1_4:60590751-60590770 | Msa0174820:intron | 60.0% | |
| CGTGTGGAGGTGGTTGGAAG+AGG | + | chr1_4:60590822-60590841 | Msa0174820:intron | 60.0% | |
| !! | CAGCTGCAAGGAGTACTGGG+AGG | + | chr1_4:60594206-60594225 | Msa0174820:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 60589876 | 60594634 | 60589876 | ID=Msa0174820;Name=Msa0174820 |
| chr1_4 | mRNA | 60589876 | 60594634 | 60589876 | ID=Msa0174820-mRNA-1;Parent=Msa0174820;Name=Msa0174820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=179|0.5|0.8|1|0.75|0.8|5|339|285 |
| chr1_4 | exon | 60589876 | 60590202 | 60589876 | ID=Msa0174820-mRNA-1:exon:19211;Parent=Msa0174820-mRNA-1 |
| chr1_4 | exon | 60592077 | 60592321 | 60592077 | ID=Msa0174820-mRNA-1:exon:19212;Parent=Msa0174820-mRNA-1 |
| chr1_4 | exon | 60592432 | 60592671 | 60592432 | ID=Msa0174820-mRNA-1:exon:19213;Parent=Msa0174820-mRNA-1 |
| chr1_4 | exon | 60593058 | 60593195 | 60593058 | ID=Msa0174820-mRNA-1:exon:19214;Parent=Msa0174820-mRNA-1 |
| chr1_4 | exon | 60594209 | 60594634 | 60594209 | ID=Msa0174820-mRNA-1:exon:19215;Parent=Msa0174820-mRNA-1 |
| chr1_4 | five_prime_UTR | 60589876 | 60590054 | 60589876 | ID=Msa0174820-mRNA-1:five_prime_utr;Parent=Msa0174820-mRNA-1 |
| chr1_4 | CDS | 60590055 | 60590202 | 60590055 | ID=Msa0174820-mRNA-1:cds;Parent=Msa0174820-mRNA-1 |
| chr1_4 | CDS | 60592077 | 60592321 | 60592077 | ID=Msa0174820-mRNA-1:cds;Parent=Msa0174820-mRNA-1 |
| chr1_4 | CDS | 60592432 | 60592671 | 60592432 | ID=Msa0174820-mRNA-1:cds;Parent=Msa0174820-mRNA-1 |
| chr1_4 | CDS | 60593058 | 60593195 | 60593058 | ID=Msa0174820-mRNA-1:cds;Parent=Msa0174820-mRNA-1 |
| chr1_4 | CDS | 60594209 | 60594295 | 60594209 | ID=Msa0174820-mRNA-1:cds;Parent=Msa0174820-mRNA-1 |
| chr1_4 | three_prime_UTR | 60594296 | 60594634 | 60594296 | ID=Msa0174820-mRNA-1:three_prime_utr;Parent=Msa0174820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
