Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128980 | XP_003591544.1 | 94.424 | 269 | 9 | 2 | 1 | 264 | 1 | 268 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128980 | sp|Q9SRX9|BAH1_ARATH | 63.194 | 288 | 81 | 6 | 1 | 264 | 1 | 287 | 1.78e-121 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128980 | G7IF76 | 94.424 | 269 | 9 | 2 | 1 | 264 | 1 | 268 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082230 | Msa0128980 | 0.854874 | 9.202625e-62 | -8.615850e-47 |
| Msa0082420 | Msa0128980 | 0.816934 | 4.280508e-52 | -8.615850e-47 |
| Msa0128800 | Msa0128980 | 0.936192 | 2.570642e-97 | -8.615850e-47 |
| Msa0128980 | Msa0174100 | 0.829743 | 4.339179e-55 | -8.615850e-47 |
| Msa0128980 | Msa0174820 | 0.950205 | 2.662806e-108 | -8.615850e-47 |
| Msa0128980 | Msa0588590 | 0.810245 | 1.268541e-50 | -8.615850e-47 |
| Msa0128980 | Msa0588620 | 0.807541 | 4.806251e-50 | -8.615850e-47 |
| Msa0128980 | Msa0708600 | 0.806402 | 8.369140e-50 | -8.615850e-47 |
| Msa0128980 | Msa1031460 | 0.825923 | 3.596962e-54 | -8.615850e-47 |
| Msa0128980 | Msa1070540 | 0.823009 | 1.744114e-53 | -8.615850e-47 |
| Msa0128980 | Msa1079720 | -0.801952 | 7.063872e-49 | -8.615850e-47 |
| Msa0128980 | Msa1101240 | 0.822470 | 2.328428e-53 | -8.615850e-47 |
| Msa0128980 | Msa1370810 | 0.825651 | 4.172979e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128980 | MtrunA17_Chr1g0195671 | 94.424 | 269 | 9 | 2 | 1 | 264 | 1 | 268 | 0.0 | 518 |
| Msa0128980 | MtrunA17_Chr7g0269281 | 81.679 | 262 | 43 | 1 | 1 | 257 | 1 | 262 | 4.33e-150 | 422 |
| Msa0128980 | MtrunA17_Chr7g0268131 | 40.727 | 275 | 143 | 5 | 1 | 257 | 1 | 273 | 1.58e-63 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128980 | AT1G02860.2 | 63.194 | 288 | 81 | 6 | 1 | 264 | 1 | 287 | 1.18e-122 | 354 |
| Msa0128980 | AT1G02860.1 | 63.194 | 288 | 81 | 6 | 1 | 264 | 1 | 287 | 1.81e-122 | 353 |
| Msa0128980 | AT1G02860.3 | 61.277 | 235 | 67 | 5 | 1 | 211 | 1 | 235 | 1.27e-91 | 271 |
| Msa0128980 | AT2G38920.2 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 4.75e-56 | 184 |
| Msa0128980 | AT2G38920.5 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 5.09e-56 | 184 |
| Msa0128980 | AT2G38920.1 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 5.09e-56 | 184 |
| Msa0128980 | AT2G38920.6 | 43.721 | 215 | 115 | 2 | 48 | 257 | 68 | 281 | 5.09e-56 | 184 |
| Msa0128980 | AT2G38920.4 | 37.870 | 169 | 99 | 2 | 48 | 211 | 68 | 235 | 1.05e-31 | 118 |
| Msa0128980 | AT2G38920.3 | 35.625 | 160 | 97 | 2 | 48 | 202 | 68 | 226 | 4.75e-26 | 103 |
Find 88 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGCTGTCTCACATTTA+AGG | 0.203509 | 1_3:+58822311 | Msa0128980:CDS |
| GCCTTTACTTTGATCGATTC+TGG | 0.234863 | 1_3:-58824165 | None:intergenic |
| GGATATGGGGTTATGGGGTT+TGG | 0.245457 | 1_3:-58819665 | None:intergenic |
| CTGGAACGACATCTTGCTTC+TGG | 0.289645 | 1_3:+58821899 | Msa0128980:CDS |
| TGGCATTACATATCAATCTA+AGG | 0.297202 | 1_3:+58822247 | Msa0128980:CDS |
| TGAACAAGGAAGAAAGGATA+TGG | 0.299635 | 1_3:-58819680 | None:intergenic |
| GATATGGGGTTATGGGGTTT+GGG | 0.301671 | 1_3:-58819664 | None:intergenic |
| GAATTTCCTTGTGCATAGTC+TGG | 0.333742 | 1_3:-58822197 | None:intergenic |
| TTCCTTGCTATGTTCATGTT+AGG | 0.340036 | 1_3:-58824287 | None:intergenic |
| ATTGAGAAGGGAAGGGAAAA+AGG | 0.353205 | 1_3:-58821828 | None:intergenic |
| TACTATTGTTGATGGGCTTA+AGG | 0.357492 | 1_3:+58822874 | Msa0128980:CDS |
| CAATGAAATGTCAGAAATAG+TGG | 0.363110 | 1_3:+58821847 | Msa0128980:CDS |
| ATTTGAGATAGATATGATTA+CGG | 0.383384 | 1_3:+58819620 | Msa0128980:five_prime_UTR |
| TGGCCACAAGTCAGAGAAAC+TGG | 0.385626 | 1_3:-58822812 | None:intergenic |
| TTTACAGCTGCAAGGAGTAC+TGG | 0.387587 | 1_3:+58823938 | Msa0128980:intron |
| TCAACATGAGAATGTACTTT+CGG | 0.395088 | 1_3:-58821925 | None:intergenic |
| GAAGAAAGGATATGGGGTTA+TGG | 0.398847 | 1_3:-58819672 | None:intergenic |
| GCATCTGTTACTATTGTTGA+TGG | 0.400772 | 1_3:+58822866 | Msa0128980:CDS |
| TCTGACTTGCTCTATATGTT+TGG | 0.403804 | 1_3:+58822389 | Msa0128980:CDS |
| TTTGAGATAGATATGATTAC+GGG | 0.408098 | 1_3:+58819621 | Msa0128980:five_prime_UTR |
| TGTTGAAAGGAAAATCAAAA+AGG | 0.412750 | 1_3:+58821942 | Msa0128980:CDS |
| AAGAAAGGATATGGGGTTAT+GGG | 0.417081 | 1_3:-58819671 | None:intergenic |
| AACGCAGTGTAGAGCGTTCA+TGG | 0.417759 | 1_3:+58824020 | Msa0128980:exon |
| GAAGTTCTGCAAGACCTATC+AGG | 0.420448 | 1_3:+58819798 | Msa0128980:CDS |
| CAAACCTCACTTGGGTTCAA+TGG | 0.439730 | 1_3:+58824060 | Msa0128980:three_prime_UTR |
| GACGTACATGGGCATTGATC+AGG | 0.450499 | 1_3:-58819928 | None:intergenic |
| AGCTTCTTGAATCCAACTAC+AGG | 0.454546 | 1_3:-58819853 | None:intergenic |
| TCAAGCAAGCAAAGGAGCAC+TGG | 0.456757 | 1_3:+58823995 | Msa0128980:CDS |
| CAGAAGAAGCTCCCTGTAGT+TGG | 0.458661 | 1_3:+58819841 | Msa0128980:CDS |
| CATCTGTTACTATTGTTGAT+GGG | 0.462476 | 1_3:+58822867 | Msa0128980:CDS |
| AGGAAATTCTTCAGAGTCCC+TGG | 0.466281 | 1_3:+58822211 | Msa0128980:CDS |
| ACCAGAATCGATCAAAGTAA+AGG | 0.467205 | 1_3:+58824164 | Msa0128980:three_prime_UTR |
| GAACAAGGAAGAAAGGATAT+GGG | 0.472657 | 1_3:-58819679 | None:intergenic |
| TGCCATCAGCTCAATAAGCC+AGG | 0.477293 | 1_3:-58822229 | None:intergenic |
| GATCCAGTTTCTCTGACTTG+TGG | 0.486686 | 1_3:+58822809 | Msa0128980:CDS |
| GACATTTCATTGAGAAGGGA+AGG | 0.489540 | 1_3:-58821836 | None:intergenic |
| TTTCTGACATTTCATTGAGA+AGG | 0.491436 | 1_3:-58821841 | None:intergenic |
| ATTGATCAGGACAAGGTTTG+TGG | 0.494079 | 1_3:-58819915 | None:intergenic |
| AATTTCCTTGTGCATAGTCT+GGG | 0.496401 | 1_3:-58822196 | None:intergenic |
| CTCAAATCCTCCTTGCTCTA+CGG | 0.500049 | 1_3:-58819604 | None:intergenic |
| GCTGGATAATGCATTCTCTC+TGG | 0.501749 | 1_3:-58824260 | None:intergenic |
| ACTTTGGCATCTGTACCTAA+AGG | 0.502566 | 1_3:+58824193 | Msa0128980:three_prime_UTR |
| GTAGAGAAGCAAACCTCACT+TGG | 0.508655 | 1_3:+58824051 | Msa0128980:three_prime_UTR |
| CATACTACTTTAATTCATGA+AGG | 0.511669 | 1_3:+58821968 | Msa0128980:CDS |
| ATAATATGAACAAGGAAGAA+AGG | 0.517064 | 1_3:-58819686 | None:intergenic |
| TCAGGAATACATGCGAGCTC+AGG | 0.526255 | 1_3:+58819816 | Msa0128980:CDS |
| AATACTAAAGAAATACGATA+AGG | 0.526973 | 1_3:+58822039 | Msa0128980:CDS |
| TTCTGACATTTCATTGAGAA+GGG | 0.527417 | 1_3:-58821840 | None:intergenic |
| TTACAGCTGCAAGGAGTACT+GGG | 0.534094 | 1_3:+58823939 | Msa0128980:intron |
| GGCATTACATATCAATCTAA+GGG | 0.535814 | 1_3:+58822248 | Msa0128980:CDS |
| AAGGCAACCACATTATTCAA+TGG | 0.537425 | 1_3:+58822291 | Msa0128980:CDS |
| TCCCTGGCTTATTGAGCTGA+TGG | 0.545974 | 1_3:+58822227 | Msa0128980:CDS |
| CTGGGAGGAAAGACTTCAGA+TGG | 0.554408 | 1_3:+58823957 | Msa0128980:CDS |
| TCAGCGTGCACAGAAACTGC+TGG | 0.555825 | 1_3:+58821880 | Msa0128980:CDS |
| CACAACTGTAGCAGAATATG+TGG | 0.556209 | 1_3:-58822832 | None:intergenic |
| AGCTCGCATGTATTCCTGAT+AGG | 0.561249 | 1_3:-58819812 | None:intergenic |
| CAAGCAAGCAAAGGAGCACT+GGG | 0.568388 | 1_3:+58823996 | Msa0128980:CDS |
| TCAATATGTTTACAGCTGCA+AGG | 0.570008 | 1_3:+58823930 | Msa0128980:intron |
| TGCTGTCTCACATTTAAGGA+TGG | 0.573316 | 1_3:+58822315 | Msa0128980:CDS |
| ATCCTAACATGAACATAGCA+AGG | 0.577270 | 1_3:+58824285 | Msa0128980:three_prime_UTR |
| TCAGATGGAAAGAGTAGAGA+GGG | 0.577968 | 1_3:+58823972 | Msa0128980:CDS |
| AAGTACATTCTCATGTTGAA+AGG | 0.578077 | 1_3:+58821929 | Msa0128980:CDS |
| GGGAAACTAAAGACAAGTCA+AGG | 0.583655 | 1_3:+58822268 | Msa0128980:CDS |
| AATGAAATGTCAGAAATAGT+GGG | 0.585835 | 1_3:+58821848 | Msa0128980:CDS |
| ATGTTCATGTTAGGATACGC+TGG | 0.591043 | 1_3:-58824278 | None:intergenic |
| ACGCAGTGTAGAGCGTTCAT+GGG | 0.593633 | 1_3:+58824021 | Msa0128980:exon |
| GCCATCAGCTCAATAAGCCA+GGG | 0.598446 | 1_3:-58822228 | None:intergenic |
| CATGGGCATTGATCAGGACA+AGG | 0.604815 | 1_3:-58819922 | None:intergenic |
| AGAGAGGGTCAAGCAAGCAA+AGG | 0.606390 | 1_3:+58823987 | Msa0128980:CDS |
| TAGCTTACCTCTCGGCACAT+AGG | 0.606824 | 1_3:-58822920 | None:intergenic |
| ACATTTCATTGAGAAGGGAA+GGG | 0.609739 | 1_3:-58821835 | None:intergenic |
| AAGAGCTCACAAGCAAGTGA+TGG | 0.610123 | 1_3:-58822342 | None:intergenic |
| AACTAAAGACAAGTCAAGGA+AGG | 0.614374 | 1_3:+58822272 | Msa0128980:CDS |
| AGAAAGGATATGGGGTTATG+GGG | 0.615262 | 1_3:-58819670 | None:intergenic |
| AACAAGGAAGAAAGGATATG+GGG | 0.622519 | 1_3:-58819678 | None:intergenic |
| TTAACATGTTCCGTAGAGCA+AGG | 0.627155 | 1_3:+58819594 | None:intergenic |
| AGAGAAAGAGAAACAGCGCA+CGG | 0.627878 | 1_3:-58819715 | None:intergenic |
| TACACCATTGAACCCAAGTG+AGG | 0.633884 | 1_3:-58824064 | None:intergenic |
| TAGAGAAGCAAACCTCACTT+GGG | 0.636136 | 1_3:+58824052 | Msa0128980:three_prime_UTR |
| TTCAGATGGAAAGAGTAGAG+AGG | 0.639549 | 1_3:+58823971 | Msa0128980:CDS |
| GCTTCTTGAATCCAACTACA+GGG | 0.643810 | 1_3:-58819852 | None:intergenic |
| GGAAGTGAATAATATGAACA+AGG | 0.680477 | 1_3:-58819694 | None:intergenic |
| ACAAGCCCAGACTATGCACA+AGG | 0.690000 | 1_3:+58822191 | Msa0128980:CDS |
| ACAGCATCCATTGAATAATG+TGG | 0.696194 | 1_3:-58822298 | None:intergenic |
| TTGAGATAGATATGATTACG+GGG | 0.701396 | 1_3:+58819622 | Msa0128980:five_prime_UTR |
| ACATGTTCCGTAGAGCAAGG+AGG | 0.718284 | 1_3:+58819597 | None:intergenic |
| AAAATGTCCTATGTGCCGAG+AGG | 0.727589 | 1_3:+58822913 | Msa0128980:CDS |
| CAGCTGCAAGGAGTACTGGG+AGG | 0.743316 | 1_3:+58823942 | Msa0128980:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAATCGAAATGAT+GGG | - | chr1_3:58819960-58819979 | None:intergenic | 15.0% |
| !! | AAAATAATTAATCGAAATGA+TGG | - | chr1_3:58819961-58819980 | None:intergenic | 15.0% |
| !! | TCAAACATTTGAAAATAATT+CGG | - | chr1_3:58820026-58820045 | None:intergenic | 15.0% |
| !!! | ATTAACTATTATCAATTTTG+TGG | + | chr1_3:58820335-58820354 | Msa0128980:intron | 15.0% |
| !!! | TTAACTATTATCAATTTTGT+GGG | + | chr1_3:58820336-58820355 | Msa0128980:intron | 15.0% |
| !!! | TTCAATTGATAATTTTAATC+TGG | + | chr1_3:58822760-58822779 | Msa0128980:intron | 15.0% |
| !!! | TAATTCAATTCATTTGTTAA+TGG | - | chr1_3:58823800-58823819 | None:intergenic | 15.0% |
| !! | ATTGAATTAAAATAAAGAGA+TGG | + | chr1_3:58823811-58823830 | Msa0128980:intron | 15.0% |
| !! | GTAAACATATTGAAATTATA+AGG | - | chr1_3:58823923-58823942 | None:intergenic | 15.0% |
| !!! | ATTTGAGATAGATATGATTA+CGG | + | chr1_3:58819620-58819639 | Msa0128980:five_prime_UTR | 20.0% |
| !! | GATGAATAAAAATTGAATGA+AGG | - | chr1_3:58820095-58820114 | None:intergenic | 20.0% |
| !! | AAATTCATGAACTAAATTGA+TGG | - | chr1_3:58820201-58820220 | None:intergenic | 20.0% |
| !! | TAGGAGTTTGATTAATATTA+AGG | - | chr1_3:58820227-58820246 | None:intergenic | 20.0% |
| !!! | TTTAATTTGAGAGTTCATTT+AGG | - | chr1_3:58820246-58820265 | None:intergenic | 20.0% |
| !!! | TAACTATTATCAATTTTGTG+GGG | + | chr1_3:58820337-58820356 | Msa0128980:intron | 20.0% |
| !! | ATAATAAATTGATGAAGTGT+TGG | - | chr1_3:58820651-58820670 | None:intergenic | 20.0% |
| !! | ATATAATTATGGTGTGAAAT+TGG | + | chr1_3:58820962-58820981 | Msa0128980:intron | 20.0% |
| !!! | GATATTTCAATTGTATTGAT+TGG | + | chr1_3:58821416-58821435 | Msa0128980:intron | 20.0% |
| !! | TATAAGAATTAAGAGTTTGT+AGG | + | chr1_3:58821652-58821671 | Msa0128980:intron | 20.0% |
| !!! | TATAATGATGTCATTTTCTT+TGG | + | chr1_3:58821705-58821724 | Msa0128980:intron | 20.0% |
| !!! | ATAATGATGTCATTTTCTTT+GGG | + | chr1_3:58821706-58821725 | Msa0128980:intron | 20.0% |
| !! | AATACTAAAGAAATACGATA+AGG | + | chr1_3:58822039-58822058 | Msa0128980:CDS | 20.0% |
| !!! | TGAGTAAATATAGTTTTTTG+TGG | - | chr1_3:58822565-58822584 | None:intergenic | 20.0% |
| !! | AAAAGAAAAGAAAAAAGTGA+AGG | - | chr1_3:58822740-58822759 | None:intergenic | 20.0% |
| !! | TTTCAATGGTAAAAATTAAC+AGG | - | chr1_3:58823155-58823174 | None:intergenic | 20.0% |
| !!! | GTCTTTATTTATAGTGAAAA+AGG | - | chr1_3:58823325-58823344 | None:intergenic | 20.0% |
| !!! | TTTTCACTATAAATAAAGAC+TGG | + | chr1_3:58823325-58823344 | Msa0128980:intron | 20.0% |
| !! | TTTCACTATAAATAAAGACT+GGG | + | chr1_3:58823326-58823345 | Msa0128980:intron | 20.0% |
| !! | TTTCTTAAGAAATGTGAAAA+AGG | - | chr1_3:58823420-58823439 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | - | chr1_3:58823496-58823515 | None:intergenic | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | chr1_3:58823621-58823640 | Msa0128980:intron | 20.0% |
| !! | TAATTTATACTGTTTATGAC+AGG | + | chr1_3:58823699-58823718 | Msa0128980:intron | 20.0% |
| !!! | GAAGAATTGAATATTTTGTT+AGG | + | chr1_3:58823751-58823770 | Msa0128980:intron | 20.0% |
| !!! | TGAATATTTTGTTAGGAAAA+AGG | + | chr1_3:58823758-58823777 | Msa0128980:intron | 20.0% |
| !! | TTTGAGATAGATATGATTAC+GGG | + | chr1_3:58819621-58819640 | Msa0128980:five_prime_UTR | 25.0% |
| ! | ATAATATGAACAAGGAAGAA+AGG | - | chr1_3:58819689-58819708 | None:intergenic | 25.0% |
| !!! | CTCTCATTAGTCATTTTTAT+TGG | + | chr1_3:58820114-58820133 | Msa0128980:intron | 25.0% |
| !! | CTCAAATTACTCCTTTTAAT+CGG | + | chr1_3:58820277-58820296 | Msa0128980:intron | 25.0% |
| ! | TAGTTAATTATATGTCCTTC+AGG | - | chr1_3:58820323-58820342 | None:intergenic | 25.0% |
| ! | CTTGTTTAAGAATATGAGAA+TGG | + | chr1_3:58820538-58820557 | Msa0128980:intron | 25.0% |
| ! | CAATTTATTATTCTTTGCTC+AGG | + | chr1_3:58820660-58820679 | Msa0128980:intron | 25.0% |
| !! | TAATTTTGTATGCTTGTGTA+TGG | + | chr1_3:58820868-58820887 | Msa0128980:intron | 25.0% |
| ! | TATGGAAAATTTGCAAAGTA+AGG | + | chr1_3:58820886-58820905 | Msa0128980:intron | 25.0% |
| ! | TGGTGGAAAACATATAATTA+TGG | + | chr1_3:58820951-58820970 | Msa0128980:intron | 25.0% |
| ! | ATAGGTAATGCTTAATGAAA+AGG | + | chr1_3:58821315-58821334 | Msa0128980:intron | 25.0% |
| ! | TAGGTAATGCTTAATGAAAA+GGG | + | chr1_3:58821316-58821335 | Msa0128980:intron | 25.0% |
| !!! | AGAATTGTTTTTGAAGGAAT+TGG | + | chr1_3:58821365-58821384 | Msa0128980:intron | 25.0% |
| !!! | GAATTGTTTTTGAAGGAATT+GGG | + | chr1_3:58821366-58821385 | Msa0128980:intron | 25.0% |
| !!! | TTCAATTGTATTGATTGGAT+TGG | + | chr1_3:58821421-58821440 | Msa0128980:intron | 25.0% |
| ! | TTCTTATAATAGACTACAAG+CGG | - | chr1_3:58821640-58821659 | None:intergenic | 25.0% |
| ! | AATGAAATGTCAGAAATAGT+GGG | + | chr1_3:58821848-58821867 | Msa0128980:CDS | 25.0% |
| ! | TGTTGAAAGGAAAATCAAAA+AGG | + | chr1_3:58821942-58821961 | Msa0128980:CDS | 25.0% |
| ! | CATACTACTTTAATTCATGA+AGG | + | chr1_3:58821968-58821987 | Msa0128980:CDS | 25.0% |
| !! | TTTCTTTTGCATGCTAATTT+TGG | + | chr1_3:58822080-58822099 | Msa0128980:intron | 25.0% |
| ! | AGATTCATTATTCTAAGCAA+GGG | + | chr1_3:58822154-58822173 | Msa0128980:intron | 25.0% |
| !! | CAGATCAATATCAATTTTGA+TGG | - | chr1_3:58822373-58822392 | None:intergenic | 25.0% |
| ! | TTGTATTGAAATTGTAAACC+AGG | + | chr1_3:58822524-58822543 | Msa0128980:intron | 25.0% |
| ! | ATAGTTTCAAATATGTGACA+TGG | + | chr1_3:58822601-58822620 | Msa0128980:intron | 25.0% |
| ! | GGAAAATATTGAACAACATA+AGG | - | chr1_3:58822650-58822669 | None:intergenic | 25.0% |
| !! | TCAATATTTTCCTAACCAAT+TGG | + | chr1_3:58822658-58822677 | Msa0128980:intron | 25.0% |
| !! | AGAAAAGTATACTGATAATG+TGG | - | chr1_3:58822691-58822710 | None:intergenic | 25.0% |
| ! | AGAAGTTATTGATGTAAGAA+TGG | - | chr1_3:58822979-58822998 | None:intergenic | 25.0% |
| ! | AAGAAGATCTTAAGTTTCAA+TGG | - | chr1_3:58823169-58823188 | None:intergenic | 25.0% |
| !!! | CAGAACTGTTTACTTATTTT+AGG | + | chr1_3:58823263-58823282 | Msa0128980:intron | 25.0% |
| ! | TTCACTATAAATAAAGACTG+GGG | + | chr1_3:58823327-58823346 | Msa0128980:intron | 25.0% |
| ! | ACAAGATAGTAGTGTTAATT+AGG | + | chr1_3:58823537-58823556 | Msa0128980:intron | 25.0% |
| ! | CAAGATAGTAGTGTTAATTA+GGG | + | chr1_3:58823538-58823557 | Msa0128980:intron | 25.0% |
| ! | AAGATAGTAGTGTTAATTAG+GGG | + | chr1_3:58823539-58823558 | Msa0128980:intron | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+AGG | + | chr1_3:58823586-58823605 | Msa0128980:intron | 25.0% |
| ! | GCATCTAGTAATTTGAAAAA+GGG | + | chr1_3:58823587-58823606 | Msa0128980:intron | 25.0% |
| ! | TTGAAAAAGGGTTTACATTT+AGG | + | chr1_3:58823599-58823618 | Msa0128980:intron | 25.0% |
| ! | TGAAAAAGGGTTTACATTTA+GGG | + | chr1_3:58823600-58823619 | Msa0128980:intron | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr1_3:58823620-58823639 | Msa0128980:intron | 25.0% |
| ! | AATATAACACCACAATTAAG+AGG | - | chr1_3:58823868-58823887 | None:intergenic | 25.0% |
| ! | AAATTATAAGGTAAGACACT+TGG | - | chr1_3:58823911-58823930 | None:intergenic | 25.0% |
| !! | AAAGTAAAGGCTTTTTACTT+TGG | + | chr1_3:58824177-58824196 | Msa0128980:three_prime_UTR | 25.0% |
| ! | ATACACTAGCCAAAAATAAA+TGG | - | chr1_3:58824219-58824238 | None:intergenic | 25.0% |
| TTGAGATAGATATGATTACG+GGG | + | chr1_3:58819622-58819641 | Msa0128980:five_prime_UTR | 30.0% | |
| GGAAGTGAATAATATGAACA+AGG | - | chr1_3:58819697-58819716 | None:intergenic | 30.0% | |
| TAAAAACATCAGAGAGAAAG+AGG | - | chr1_3:58819769-58819788 | None:intergenic | 30.0% | |
| !! | ATTAATCGAAATGATGGGTT+TGG | - | chr1_3:58819955-58819974 | None:intergenic | 30.0% |
| ATATATTCACGATCCAATTC+AGG | + | chr1_3:58820067-58820086 | Msa0128980:intron | 30.0% | |
| AAGACTAATGTCCGATTAAA+AGG | - | chr1_3:58820291-58820310 | None:intergenic | 30.0% | |
| AGTCTTAAAATTTGTCCTGA+AGG | + | chr1_3:58820305-58820324 | Msa0128980:intron | 30.0% | |
| ! | TATTATCAATTTTGTGGGGA+GGG | + | chr1_3:58820341-58820360 | Msa0128980:intron | 30.0% |
| ACATATTAAACTGCTCACTA+AGG | - | chr1_3:58820373-58820392 | None:intergenic | 30.0% | |
| TATGTTATTCACTAGTACTG+TGG | + | chr1_3:58820388-58820407 | Msa0128980:intron | 30.0% | |
| TTTATTATTCTTTGCTCAGG+AGG | + | chr1_3:58820663-58820682 | Msa0128980:intron | 30.0% | |
| !!! | TGTCGATGGTTGTTTTAAAA+TGG | + | chr1_3:58820745-58820764 | Msa0128980:intron | 30.0% |
| !!! | ATGGTTGTTTTAAAATGGCT+GGG | + | chr1_3:58820750-58820769 | Msa0128980:intron | 30.0% |
| AAAATTTGCAAAGTAAGGCA+TGG | + | chr1_3:58820891-58820910 | Msa0128980:intron | 30.0% | |
| TTGGTTAGATGGTAAGATTA+AGG | + | chr1_3:58820981-58821000 | Msa0128980:intron | 30.0% | |
| TGGTTAGATGGTAAGATTAA+GGG | + | chr1_3:58820982-58821001 | Msa0128980:intron | 30.0% | |
| ATGGTAAGATTAAGGGATTT+GGG | + | chr1_3:58820989-58821008 | Msa0128980:intron | 30.0% | |
| !! | ATTGGTTTGATAAACATGCA+TGG | + | chr1_3:58821268-58821287 | Msa0128980:intron | 30.0% |
| ATCAGAACTTCAGAAGAAAA+TGG | + | chr1_3:58821291-58821310 | Msa0128980:intron | 30.0% | |
| ACTTCAGAAGAAAATGGTAT+AGG | + | chr1_3:58821297-58821316 | Msa0128980:intron | 30.0% | |
| !!! | AGCAGAAGAATTGTTTTTGA+AGG | + | chr1_3:58821359-58821378 | Msa0128980:intron | 30.0% |
| !! | ACTGTTAAGTGCTATTTAGA+CGG | + | chr1_3:58821393-58821412 | Msa0128980:intron | 30.0% |
| !! | ATTGTAGAATTTGTTGCACA+AGG | + | chr1_3:58821477-58821496 | Msa0128980:intron | 30.0% |
| ACTTCACTAATTAACTCTGA+TGG | - | chr1_3:58821517-58821536 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTGGGTACAGATT+GGG | + | chr1_3:58821717-58821736 | Msa0128980:intron | 30.0% |
| ! | ATTACACTATGTTAGCTTAG+AGG | - | chr1_3:58821784-58821803 | None:intergenic | 30.0% |
| !! | TTATTTTATTCAGTGTGCGA+TGG | + | chr1_3:58821803-58821822 | Msa0128980:intron | 30.0% |
| ! | TATTTTATTCAGTGTGCGAT+GGG | + | chr1_3:58821804-58821823 | Msa0128980:intron | 30.0% |
| TTCTGACATTTCATTGAGAA+GGG | - | chr1_3:58821843-58821862 | None:intergenic | 30.0% | |
| TTTCTGACATTTCATTGAGA+AGG | - | chr1_3:58821844-58821863 | None:intergenic | 30.0% | |
| CAATGAAATGTCAGAAATAG+TGG | + | chr1_3:58821847-58821866 | Msa0128980:CDS | 30.0% | |
| TCAACATGAGAATGTACTTT+CGG | - | chr1_3:58821928-58821947 | None:intergenic | 30.0% | |
| AAGTACATTCTCATGTTGAA+AGG | + | chr1_3:58821929-58821948 | Msa0128980:CDS | 30.0% | |
| CAGATTCATTATTCTAAGCA+AGG | + | chr1_3:58822153-58822172 | Msa0128980:intron | 30.0% | |
| TGGCATTACATATCAATCTA+AGG | + | chr1_3:58822247-58822266 | Msa0128980:CDS | 30.0% | |
| GGCATTACATATCAATCTAA+GGG | + | chr1_3:58822248-58822267 | Msa0128980:CDS | 30.0% | |
| ! | TTTGTACATGACTCTCATTT+TGG | + | chr1_3:58822451-58822470 | Msa0128980:intron | 30.0% |
| ! | TTTTGTGGAACCATAAAACT+AGG | - | chr1_3:58822550-58822569 | None:intergenic | 30.0% |
| CATCTGTTACTATTGTTGAT+GGG | + | chr1_3:58822867-58822886 | Msa0128980:CDS | 30.0% | |
| AAAATTAACAGGCCTAACAA+AGG | - | chr1_3:58823144-58823163 | None:intergenic | 30.0% | |
| GAAGCTAAACAATTACAGAA+GGG | - | chr1_3:58823207-58823226 | None:intergenic | 30.0% | |
| AGAAGCTAAACAATTACAGA+AGG | - | chr1_3:58823208-58823227 | None:intergenic | 30.0% | |
| ! | TTCTGTAATTGTTTAGCTTC+TGG | + | chr1_3:58823207-58823226 | Msa0128980:intron | 30.0% |
| GCTGAATAAGTATAATTGAG+CGG | + | chr1_3:58823295-58823314 | Msa0128980:intron | 30.0% | |
| AGAAATGTGAAAAAGGCAAT+GGG | - | chr1_3:58823413-58823432 | None:intergenic | 30.0% | |
| AAGAAATGTGAAAAAGGCAA+TGG | - | chr1_3:58823414-58823433 | None:intergenic | 30.0% | |
| ! | TGTTAATTAGGGGTATGTTT+AGG | + | chr1_3:58823549-58823568 | Msa0128980:intron | 30.0% |
| ! | CATTTTCACAAGATTGTTGA+AGG | + | chr1_3:58824132-58824151 | Msa0128980:three_prime_UTR | 30.0% |
| !! | ACCTAAAGGCCATTTATTTT+TGG | + | chr1_3:58824207-58824226 | Msa0128980:three_prime_UTR | 30.0% |
| AAGAAAGGATATGGGGTTAT+GGG | - | chr1_3:58819674-58819693 | None:intergenic | 35.0% | |
| AACAAGGAAGAAAGGATATG+GGG | - | chr1_3:58819681-58819700 | None:intergenic | 35.0% | |
| GAACAAGGAAGAAAGGATAT+GGG | - | chr1_3:58819682-58819701 | None:intergenic | 35.0% | |
| TGAACAAGGAAGAAAGGATA+TGG | - | chr1_3:58819683-58819702 | None:intergenic | 35.0% | |
| TTGAATGAAGGAACCTGAAT+TGG | - | chr1_3:58820083-58820102 | None:intergenic | 35.0% | |
| TTTGACACGTGATTCATGAT+TGG | + | chr1_3:58820143-58820162 | Msa0128980:intron | 35.0% | |
| ! | CTATTATCAATTTTGTGGGG+AGG | + | chr1_3:58820340-58820359 | Msa0128980:intron | 35.0% |
| ! | ATTATCAATTTTGTGGGGAG+GGG | + | chr1_3:58820342-58820361 | Msa0128980:intron | 35.0% |
| ! | GTTGGTAAATGATAACCTCT+TGG | - | chr1_3:58820633-58820652 | None:intergenic | 35.0% |
| TTGAGTACTCGAAATTGTCA+AGG | + | chr1_3:58820721-58820740 | Msa0128980:intron | 35.0% | |
| TGAGTACTCGAAATTGTCAA+GGG | + | chr1_3:58820722-58820741 | Msa0128980:intron | 35.0% | |
| !!! | GATGGTTGTTTTAAAATGGC+TGG | + | chr1_3:58820749-58820768 | Msa0128980:intron | 35.0% |
| AAATGATCGCTGCTGTTATT+TGG | - | chr1_3:58820792-58820811 | None:intergenic | 35.0% | |
| !! | GTGGAGTGTTTTGTAATAAG+AGG | + | chr1_3:58820913-58820932 | Msa0128980:intron | 35.0% |
| ! | GAGTGTTTTGTAATAAGAGG+AGG | + | chr1_3:58820916-58820935 | Msa0128980:intron | 35.0% |
| ATGGTGTGAAATTGGTTAGA+TGG | + | chr1_3:58820970-58820989 | Msa0128980:intron | 35.0% | |
| GATGGTAAGATTAAGGGATT+TGG | + | chr1_3:58820988-58821007 | Msa0128980:intron | 35.0% | |
| CAGTGAATTTGAAAACCACT+GGG | - | chr1_3:58821025-58821044 | None:intergenic | 35.0% | |
| AGAAAATAGTAGCAGGGATT+TGG | + | chr1_3:58821060-58821079 | Msa0128980:intron | 35.0% | |
| TTTCTGCATAACAGTCATAC+TGG | + | chr1_3:58821099-58821118 | Msa0128980:intron | 35.0% | |
| !! | TACTGGTATGCTTGATTTGT+AGG | + | chr1_3:58821116-58821135 | Msa0128980:intron | 35.0% |
| !! | ACTGGTATGCTTGATTTGTA+GGG | + | chr1_3:58821117-58821136 | Msa0128980:intron | 35.0% |
| GTTATGAAGCTATACCGTTA+AGG | + | chr1_3:58821146-58821165 | Msa0128980:intron | 35.0% | |
| ! | TGAGTGTTACTCGTCTTAAT+TGG | + | chr1_3:58821250-58821269 | Msa0128980:intron | 35.0% |
| !! | CTGTTAAGTGCTATTTAGAC+GGG | + | chr1_3:58821394-58821413 | Msa0128980:intron | 35.0% |
| TCACTAATTAACTCTGATGG+AGG | - | chr1_3:58821514-58821533 | None:intergenic | 35.0% | |
| ATTTAGTCACTGAAGCTGAA+GGG | - | chr1_3:58821610-58821629 | None:intergenic | 35.0% | |
| AATTTAGTCACTGAAGCTGA+AGG | - | chr1_3:58821611-58821630 | None:intergenic | 35.0% | |
| ! | CATTTTCTTTGGGTACAGAT+TGG | + | chr1_3:58821716-58821735 | Msa0128980:intron | 35.0% |
| ! | TTTTCTTTGGGTACAGATTG+GGG | + | chr1_3:58821718-58821737 | Msa0128980:intron | 35.0% |
| ! | TATGTTAGCTTAGAGGTAGT+GGG | - | chr1_3:58821777-58821796 | None:intergenic | 35.0% |
| ACATTTCATTGAGAAGGGAA+GGG | - | chr1_3:58821838-58821857 | None:intergenic | 35.0% | |
| AATTTCCTTGTGCATAGTCT+GGG | - | chr1_3:58822199-58822218 | None:intergenic | 35.0% | |
| AACTAAAGACAAGTCAAGGA+AGG | + | chr1_3:58822272-58822291 | Msa0128980:CDS | 35.0% | |
| AAGGCAACCACATTATTCAA+TGG | + | chr1_3:58822291-58822310 | Msa0128980:CDS | 35.0% | |
| ACAGCATCCATTGAATAATG+TGG | - | chr1_3:58822301-58822320 | None:intergenic | 35.0% | |
| !! | TCTGACTTGCTCTATATGTT+TGG | + | chr1_3:58822389-58822408 | Msa0128980:CDS | 35.0% |
| TTGAACAACATAAGGAGATC+TGG | - | chr1_3:58822642-58822661 | None:intergenic | 35.0% | |
| !! | GTGAAAGTGTCTCTCTTATA+AGG | + | chr1_3:58822713-58822732 | Msa0128980:intron | 35.0% |
| GCATCTGTTACTATTGTTGA+TGG | + | chr1_3:58822866-58822885 | Msa0128980:CDS | 35.0% | |
| !! | TACTATTGTTGATGGGCTTA+AGG | + | chr1_3:58822874-58822893 | Msa0128980:CDS | 35.0% |
| TAATGAGATCCTACTGCATA+TGG | - | chr1_3:58822946-58822965 | None:intergenic | 35.0% | |
| TCAAATGGGTGCTTAGATAT+AGG | + | chr1_3:58823635-58823654 | Msa0128980:intron | 35.0% | |
| CAAATGGGTGCTTAGATATA+GGG | + | chr1_3:58823636-58823655 | Msa0128980:intron | 35.0% | |
| TTATACTGTTTATGACAGGC+AGG | + | chr1_3:58823703-58823722 | Msa0128980:intron | 35.0% | |
| GATCGAAAACAGACTCTAAA+TGG | - | chr1_3:58823846-58823865 | None:intergenic | 35.0% | |
| ! | GTTTTCGATCCTCTTAATTG+TGG | + | chr1_3:58823856-58823875 | Msa0128980:intron | 35.0% |
| TCAATATGTTTACAGCTGCA+AGG | + | chr1_3:58823930-58823949 | Msa0128980:intron | 35.0% | |
| ACCAGAATCGATCAAAGTAA+AGG | + | chr1_3:58824164-58824183 | Msa0128980:three_prime_UTR | 35.0% | |
| GCCAAAAATAAATGGCCTTT+AGG | - | chr1_3:58824211-58824230 | None:intergenic | 35.0% | |
| ATCCTAACATGAACATAGCA+AGG | + | chr1_3:58824285-58824304 | Msa0128980:three_prime_UTR | 35.0% | |
| ! | TTCCTTGCTATGTTCATGTT+AGG | - | chr1_3:58824290-58824309 | None:intergenic | 35.0% |
| ! | ATCATACATGTTTTGTCCTG+TGG | - | chr1_3:58824316-58824335 | None:intergenic | 35.0% |
| AGAAAGGATATGGGGTTATG+GGG | - | chr1_3:58819673-58819692 | None:intergenic | 40.0% | |
| GAAGAAAGGATATGGGGTTA+TGG | - | chr1_3:58819675-58819694 | None:intergenic | 40.0% | |
| GCTTCTTGAATCCAACTACA+GGG | - | chr1_3:58819855-58819874 | None:intergenic | 40.0% | |
| AGCTTCTTGAATCCAACTAC+AGG | - | chr1_3:58819856-58819875 | None:intergenic | 40.0% | |
| ATTGATCAGGACAAGGTTTG+TGG | - | chr1_3:58819918-58819937 | None:intergenic | 40.0% | |
| ! | TTATCAATTTTGTGGGGAGG+GGG | + | chr1_3:58820343-58820362 | Msa0128980:intron | 40.0% |
| ATTCACTAGTACTGTGGCAA+AGG | + | chr1_3:58820394-58820413 | Msa0128980:intron | 40.0% | |
| ATGTGTACAAGATGCATGGA+GGG | + | chr1_3:58820432-58820451 | Msa0128980:intron | 40.0% | |
| TTCTCAGGCACATACAAGTA+AGG | - | chr1_3:58820479-58820498 | None:intergenic | 40.0% | |
| TACTTGTATGTGCCTGAGAA+TGG | + | chr1_3:58820479-58820498 | Msa0128980:intron | 40.0% | |
| AGAATATGAGAATGGACGTG+TGG | + | chr1_3:58820546-58820565 | Msa0128980:intron | 40.0% | |
| AGGCAGTGTATAAGGAGATA+TGG | + | chr1_3:58820606-58820625 | Msa0128980:intron | 40.0% | |
| GGCAGTGTATAAGGAGATAT+GGG | + | chr1_3:58820607-58820626 | Msa0128980:intron | 40.0% | |
| GATCATTTCACTCTGATTGC+AGG | + | chr1_3:58820804-58820823 | Msa0128980:intron | 40.0% | |
| !! | TGATTGCAGGACTGTTTTGA+GGG | + | chr1_3:58820817-58820836 | Msa0128980:intron | 40.0% |
| ATTTGCAAAGTAAGGCATGG+TGG | + | chr1_3:58820894-58820913 | Msa0128980:intron | 40.0% | |
| ! | AGAGGAGGATGTAATTTTCG+TGG | + | chr1_3:58820931-58820950 | Msa0128980:intron | 40.0% |
| GCAGTGAATTTGAAAACCAC+TGG | - | chr1_3:58821026-58821045 | None:intergenic | 40.0% | |
| TTCAAATTCACTGCTATGCC+TGG | + | chr1_3:58821032-58821051 | Msa0128980:intron | 40.0% | |
| TCAAATTCACTGCTATGCCT+GGG | + | chr1_3:58821033-58821052 | Msa0128980:intron | 40.0% | |
| GGCTTGAGAAAATAGTAGCA+GGG | + | chr1_3:58821054-58821073 | Msa0128980:intron | 40.0% | |
| AAATAGTAGCAGGGATTTGG+TGG | + | chr1_3:58821063-58821082 | Msa0128980:intron | 40.0% | |
| !! | CTGGTATGCTTGATTTGTAG+GGG | + | chr1_3:58821118-58821137 | Msa0128980:intron | 40.0% |
| TTTCTTTGGGTACAGATTGG+GGG | + | chr1_3:58821719-58821738 | Msa0128980:intron | 40.0% | |
| ! | CTATGTTAGCTTAGAGGTAG+TGG | - | chr1_3:58821778-58821797 | None:intergenic | 40.0% |
| ATTGAGAAGGGAAGGGAAAA+AGG | - | chr1_3:58821831-58821850 | None:intergenic | 40.0% | |
| GACATTTCATTGAGAAGGGA+AGG | - | chr1_3:58821839-58821858 | None:intergenic | 40.0% | |
| GAATTTCCTTGTGCATAGTC+TGG | - | chr1_3:58822200-58822219 | None:intergenic | 40.0% | |
| GGGAAACTAAAGACAAGTCA+AGG | + | chr1_3:58822268-58822287 | Msa0128980:CDS | 40.0% | |
| TGGATGCTGTCTCACATTTA+AGG | + | chr1_3:58822311-58822330 | Msa0128980:CDS | 40.0% | |
| TGCTGTCTCACATTTAAGGA+TGG | + | chr1_3:58822315-58822334 | Msa0128980:CDS | 40.0% | |
| !!! | GTAAACCAGGCCTAGTTTTA+TGG | + | chr1_3:58822537-58822556 | Msa0128980:intron | 40.0% |
| CACAACTGTAGCAGAATATG+TGG | - | chr1_3:58822835-58822854 | None:intergenic | 40.0% | |
| TTGAAAGACCAGTTGAGCTT+AGG | - | chr1_3:58823089-58823108 | None:intergenic | 40.0% | |
| AAATTTGCCCGACCTTTGTT+AGG | + | chr1_3:58823129-58823148 | Msa0128980:intron | 40.0% | |
| TTAACAGGCCTAACAAAGGT+CGG | - | chr1_3:58823140-58823159 | None:intergenic | 40.0% | |
| AGACTGGGGATGTTAAGAAT+TGG | + | chr1_3:58823341-58823360 | Msa0128980:intron | 40.0% | |
| AATGTGAAAAAGGCAATGGG+TGG | - | chr1_3:58823410-58823429 | None:intergenic | 40.0% | |
| !! | TTATGAAGGTGCTGTACACT+TGG | + | chr1_3:58823729-58823748 | Msa0128980:intron | 40.0% |
| TTCAGATGGAAAGAGTAGAG+AGG | + | chr1_3:58823971-58823990 | Msa0128980:CDS | 40.0% | |
| TCAGATGGAAAGAGTAGAGA+GGG | + | chr1_3:58823972-58823991 | Msa0128980:CDS | 40.0% | |
| TAGAGAAGCAAACCTCACTT+GGG | + | chr1_3:58824052-58824071 | Msa0128980:three_prime_UTR | 40.0% | |
| ! | GCCTTTACTTTGATCGATTC+TGG | - | chr1_3:58824168-58824187 | None:intergenic | 40.0% |
| ACTTTGGCATCTGTACCTAA+AGG | + | chr1_3:58824193-58824212 | Msa0128980:three_prime_UTR | 40.0% | |
| ATGTTCATGTTAGGATACGC+TGG | - | chr1_3:58824281-58824300 | None:intergenic | 40.0% | |
| ACATAGCAAGGAAAAACCAC+AGG | + | chr1_3:58824297-58824316 | Msa0128980:three_prime_UTR | 40.0% | |
| GATATGGGGTTATGGGGTTT+GGG | - | chr1_3:58819667-58819686 | None:intergenic | 45.0% | |
| AGAGAAAGAGAAACAGCGCA+CGG | - | chr1_3:58819718-58819737 | None:intergenic | 45.0% | |
| GAAGTTCTGCAAGACCTATC+AGG | + | chr1_3:58819798-58819817 | Msa0128980:CDS | 45.0% | |
| AGCTCGCATGTATTCCTGAT+AGG | - | chr1_3:58819815-58819834 | None:intergenic | 45.0% | |
| !! | ATGGGTTTGGTGACGTACAT+GGG | - | chr1_3:58819942-58819961 | None:intergenic | 45.0% |
| GATGTGTACAAGATGCATGG+AGG | + | chr1_3:58820431-58820450 | Msa0128980:intron | 45.0% | |
| GAGGAGGGAGTCATTTCATT+TGG | + | chr1_3:58820507-58820526 | Msa0128980:intron | 45.0% | |
| ATATGAGAATGGACGTGTGG+AGG | + | chr1_3:58820549-58820568 | Msa0128980:intron | 45.0% | |
| AGATGGGATCTACTCTGTGA+AGG | + | chr1_3:58820586-58820605 | Msa0128980:intron | 45.0% | |
| CTCTGTGAAGGCAGTGTATA+AGG | + | chr1_3:58820598-58820617 | Msa0128980:intron | 45.0% | |
| ATAAGGAGATATGGGCCAAG+AGG | + | chr1_3:58820615-58820634 | Msa0128980:intron | 45.0% | |
| !! | GAAATTGTCAAGGGTGTCGA+TGG | + | chr1_3:58820731-58820750 | Msa0128980:intron | 45.0% |
| ! | GCTGCTGTTATTTGGTAGCA+CGG | - | chr1_3:58820784-58820803 | None:intergenic | 45.0% |
| ! | CTGATTGCAGGACTGTTTTG+AGG | + | chr1_3:58820816-58820835 | Msa0128980:intron | 45.0% |
| ! | GGAGGATGTAATTTTCGTGG+TGG | + | chr1_3:58820934-58820953 | Msa0128980:intron | 45.0% |
| ! | GCTACTATTTTCTCAAGCCC+AGG | - | chr1_3:58821053-58821072 | None:intergenic | 45.0% |
| GGGCTTGAGAAAATAGTAGC+AGG | + | chr1_3:58821053-58821072 | Msa0128980:intron | 45.0% | |
| TGAAGCTATACCGTTAAGGC+TGG | + | chr1_3:58821150-58821169 | Msa0128980:intron | 45.0% | |
| GAAGCTATACCGTTAAGGCT+GGG | + | chr1_3:58821151-58821170 | Msa0128980:intron | 45.0% | |
| TTCGACCTGTCTACGAAAAC+TGG | - | chr1_3:58821190-58821209 | None:intergenic | 45.0% | |
| AGGAAATTCTTCAGAGTCCC+TGG | + | chr1_3:58822211-58822230 | Msa0128980:CDS | 45.0% | |
| AAGAGCTCACAAGCAAGTGA+TGG | - | chr1_3:58822345-58822364 | None:intergenic | 45.0% | |
| TGGAACCATAAAACTAGGCC+TGG | - | chr1_3:58822545-58822564 | None:intergenic | 45.0% | |
| TAATGTGGAACTGCGCCAAT+TGG | - | chr1_3:58822676-58822695 | None:intergenic | 45.0% | |
| !! | TAATCTGGCTCTTCCATGAC+AGG | + | chr1_3:58822775-58822794 | Msa0128980:intron | 45.0% |
| TCAAACACTGTGTCCTGTCA+TGG | - | chr1_3:58822791-58822810 | None:intergenic | 45.0% | |
| ! | GATCCAGTTTCTCTGACTTG+TGG | + | chr1_3:58822809-58822828 | Msa0128980:CDS | 45.0% |
| AAAATGTCCTATGTGCCGAG+AGG | + | chr1_3:58822913-58822932 | Msa0128980:CDS | 45.0% | |
| GCATATGGTAGCTTACCTCT+CGG | - | chr1_3:58822931-58822950 | None:intergenic | 45.0% | |
| GGTAAGCTACCATATGCAGT+AGG | + | chr1_3:58822934-58822953 | Msa0128980:intron | 45.0% | |
| GCAGTAGGATCTCATTAGAG+TGG | + | chr1_3:58822949-58822968 | Msa0128980:intron | 45.0% | |
| TAACAGGCCTAACAAAGGTC+GGG | - | chr1_3:58823139-58823158 | None:intergenic | 45.0% | |
| GCAATGGGTGGCTACATTAA+GGG | - | chr1_3:58823398-58823417 | None:intergenic | 45.0% | |
| TGGGTGCTTAGATATAGGGA+CGG | + | chr1_3:58823640-58823659 | Msa0128980:intron | 45.0% | |
| TGCTTAGATATAGGGACGGA+GGG | + | chr1_3:58823644-58823663 | Msa0128980:intron | 45.0% | |
| TGACAGGCAGGAGTTTATGA+AGG | + | chr1_3:58823715-58823734 | Msa0128980:intron | 45.0% | |
| ! | TTTACAGCTGCAAGGAGTAC+TGG | + | chr1_3:58823938-58823957 | Msa0128980:intron | 45.0% |
| !! | TTACAGCTGCAAGGAGTACT+GGG | + | chr1_3:58823939-58823958 | Msa0128980:intron | 45.0% |
| GTAGAGAAGCAAACCTCACT+TGG | + | chr1_3:58824051-58824070 | Msa0128980:three_prime_UTR | 45.0% | |
| CAAACCTCACTTGGGTTCAA+TGG | + | chr1_3:58824060-58824079 | Msa0128980:three_prime_UTR | 45.0% | |
| TACACCATTGAACCCAAGTG+AGG | - | chr1_3:58824067-58824086 | None:intergenic | 45.0% | |
| GCTGGATAATGCATTCTCTC+TGG | - | chr1_3:58824263-58824282 | None:intergenic | 45.0% | |
| !!! | ATTATTTTGTTTTAATTTTA+CGG | + | chr1_3:58819973-58819992 | Msa0128980:intron | 5.0% |
| GGATATGGGGTTATGGGGTT+TGG | - | chr1_3:58819668-58819687 | None:intergenic | 50.0% | |
| TCAGGAATACATGCGAGCTC+AGG | + | chr1_3:58819816-58819835 | Msa0128980:CDS | 50.0% | |
| CAGAAGAAGCTCCCTGTAGT+TGG | + | chr1_3:58819841-58819860 | Msa0128980:CDS | 50.0% | |
| !! | CATGGGCATTGATCAGGACA+AGG | - | chr1_3:58819925-58819944 | None:intergenic | 50.0% |
| !! | GACGTACATGGGCATTGATC+AGG | - | chr1_3:58819931-58819950 | None:intergenic | 50.0% |
| !! | GATGGGTTTGGTGACGTACA+TGG | - | chr1_3:58819943-58819962 | None:intergenic | 50.0% |
| GCGGATGTGTACAAGATGCA+TGG | + | chr1_3:58820428-58820447 | Msa0128980:intron | 50.0% | |
| TATGTGCCTGAGAATGGAGC+TGG | + | chr1_3:58820485-58820504 | Msa0128980:intron | 50.0% | |
| TTGGGTATGACATCTCCCAG+TGG | + | chr1_3:58821007-58821026 | Msa0128980:intron | 50.0% | |
| !! | TGCTTGATTTGTAGGGGCTG+CGG | + | chr1_3:58821124-58821143 | Msa0128980:intron | 50.0% |
| ! | CGTTGCCAGTTTTCGTAGAC+AGG | + | chr1_3:58821182-58821201 | Msa0128980:intron | 50.0% |
| TTCGTAGACAGGTCGAACCT+TGG | + | chr1_3:58821193-58821212 | Msa0128980:intron | 50.0% | |
| ACAGGTCGAACCTTGGTTTC+TGG | + | chr1_3:58821200-58821219 | Msa0128980:intron | 50.0% | |
| !! | ACCTTGGTTTCTGGCATCAG+TGG | + | chr1_3:58821209-58821228 | Msa0128980:intron | 50.0% |
| TCCACTGATGCCAGAAACCA+AGG | - | chr1_3:58821213-58821232 | None:intergenic | 50.0% | |
| TGGCATCAGTGGAAGTGAGA+TGG | + | chr1_3:58821220-58821239 | Msa0128980:intron | 50.0% | |
| CATCAGTGGAAGTGAGATGG+TGG | + | chr1_3:58821223-58821242 | Msa0128980:intron | 50.0% | |
| !! | AGTGGAAGTGAGATGGTGGA+GGG | + | chr1_3:58821227-58821246 | Msa0128980:intron | 50.0% |
| ! | AGCTGAAGGGTCGGTCATTT+TGG | - | chr1_3:58821597-58821616 | None:intergenic | 50.0% |
| AGTCACTGAAGCTGAAGGGT+CGG | - | chr1_3:58821606-58821625 | None:intergenic | 50.0% | |
| CTGGAACGACATCTTGCTTC+TGG | + | chr1_3:58821899-58821918 | Msa0128980:CDS | 50.0% | |
| ACAAGCCCAGACTATGCACA+AGG | + | chr1_3:58822191-58822210 | Msa0128980:CDS | 50.0% | |
| TCCCTGGCTTATTGAGCTGA+TGG | + | chr1_3:58822227-58822246 | Msa0128980:CDS | 50.0% | |
| GCCATCAGCTCAATAAGCCA+GGG | - | chr1_3:58822231-58822250 | None:intergenic | 50.0% | |
| TGCCATCAGCTCAATAAGCC+AGG | - | chr1_3:58822232-58822251 | None:intergenic | 50.0% | |
| TGGAACTGCGCCAATTGGTT+AGG | - | chr1_3:58822671-58822690 | None:intergenic | 50.0% | |
| TGGCCACAAGTCAGAGAAAC+TGG | - | chr1_3:58822815-58822834 | None:intergenic | 50.0% | |
| TAGCTTACCTCTCGGCACAT+AGG | - | chr1_3:58822923-58822942 | None:intergenic | 50.0% | |
| TGTGCATCAGACCAAGAACC+AGG | + | chr1_3:58823056-58823075 | Msa0128980:intron | 50.0% | |
| ! | TAGGACAGGATCCTGGTTCT+TGG | - | chr1_3:58823070-58823089 | None:intergenic | 50.0% |
| TTGAGCTTAGGACAGGATCC+TGG | - | chr1_3:58823077-58823096 | None:intergenic | 50.0% | |
| GATCCTGTCCTAAGCTCAAC+TGG | + | chr1_3:58823078-58823097 | Msa0128980:intron | 50.0% | |
| AGACCAGTTGAGCTTAGGAC+AGG | - | chr1_3:58823084-58823103 | None:intergenic | 50.0% | |
| AAGGGACGGAGGGAGTAATA+AGG | - | chr1_3:58823380-58823399 | None:intergenic | 50.0% | |
| TGGCTACATTAAGGGACGGA+GGG | - | chr1_3:58823390-58823409 | None:intergenic | 50.0% | |
| TGGGTGGCTACATTAAGGGA+CGG | - | chr1_3:58823394-58823413 | None:intergenic | 50.0% | |
| GGCAATGGGTGGCTACATTA+AGG | - | chr1_3:58823399-58823418 | None:intergenic | 50.0% | |
| GTGCTTAGATATAGGGACGG+AGG | + | chr1_3:58823643-58823662 | Msa0128980:intron | 50.0% | |
| CTGGGAGGAAAGACTTCAGA+TGG | + | chr1_3:58823957-58823976 | Msa0128980:CDS | 50.0% | |
| AGAGAGGGTCAAGCAAGCAA+AGG | + | chr1_3:58823987-58824006 | Msa0128980:CDS | 50.0% | |
| ! | TCAAGCAAGCAAAGGAGCAC+TGG | + | chr1_3:58823995-58824014 | Msa0128980:CDS | 50.0% |
| !! | CAAGCAAGCAAAGGAGCACT+GGG | + | chr1_3:58823996-58824015 | Msa0128980:CDS | 50.0% |
| ! | AACGCAGTGTAGAGCGTTCA+TGG | + | chr1_3:58824020-58824039 | Msa0128980:exon | 50.0% |
| ! | ACGCAGTGTAGAGCGTTCAT+GGG | + | chr1_3:58824021-58824040 | Msa0128980:exon | 50.0% |
| GGCAAAGGATGCAGCAGTAG+CGG | + | chr1_3:58820409-58820428 | Msa0128980:intron | 55.0% | |
| CTGAGAATGGAGCTGGAGGA+GGG | + | chr1_3:58820492-58820511 | Msa0128980:intron | 55.0% | |
| TGAGAATGGACGTGTGGAGG+TGG | + | chr1_3:58820552-58820571 | Msa0128980:intron | 55.0% | |
| AATGGACGTGTGGAGGTGGT+TGG | + | chr1_3:58820556-58820575 | Msa0128980:intron | 55.0% | |
| AGGTGGTTGGAAGAGGCAGA+TGG | + | chr1_3:58820569-58820588 | Msa0128980:intron | 55.0% | |
| GGTGGTTGGAAGAGGCAGAT+GGG | + | chr1_3:58820570-58820589 | Msa0128980:intron | 55.0% | |
| !! | AGTAGCAGGGATTTGGTGGC+AGG | + | chr1_3:58821067-58821086 | Msa0128980:intron | 55.0% |
| !! | GTAGCAGGGATTTGGTGGCA+GGG | + | chr1_3:58821068-58821087 | Msa0128980:intron | 55.0% |
| !! | AGGGATTTGGTGGCAGGGTT+TGG | + | chr1_3:58821073-58821092 | Msa0128980:intron | 55.0% |
| ! | GAGCTTGCTCCCAGCCTTAA+CGG | - | chr1_3:58821163-58821182 | None:intergenic | 55.0% |
| ! | CAGTGGAAGTGAGATGGTGG+AGG | + | chr1_3:58821226-58821245 | Msa0128980:intron | 55.0% |
| TCAGCGTGCACAGAAACTGC+TGG | + | chr1_3:58821880-58821899 | Msa0128980:CDS | 55.0% | |
| GTGGCTACATTAAGGGACGG+AGG | - | chr1_3:58823391-58823410 | None:intergenic | 55.0% | |
| GTGCCTGAGAATGGAGCTGG+AGG | + | chr1_3:58820488-58820507 | Msa0128980:intron | 60.0% | |
| CCTCCTCCAGCTCCATTCTC+AGG | - | chr1_3:58820494-58820513 | None:intergenic | 60.0% | |
| CCTGAGAATGGAGCTGGAGG+AGG | + | chr1_3:58820491-58820510 | Msa0128980:intron | 60.0% | |
| CGTGTGGAGGTGGTTGGAAG+AGG | + | chr1_3:58820562-58820581 | Msa0128980:intron | 60.0% | |
| !! | CAGCTGCAAGGAGTACTGGG+AGG | + | chr1_3:58823942-58823961 | Msa0128980:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58819605 | 58824370 | 58819605 | ID=Msa0128980;Name=Msa0128980 |
| chr1_3 | mRNA | 58819605 | 58824370 | 58819605 | ID=Msa0128980-mRNA-1;Parent=Msa0128980;Name=Msa0128980-mRNA-1;_AED=0.10;_eAED=0.10;_QI=191|0.5|0.8|1|0.5|0.8|5|339|285 |
| chr1_3 | exon | 58819605 | 58819943 | 58819605 | ID=Msa0128980-mRNA-1:exon:18975;Parent=Msa0128980-mRNA-1 |
| chr1_3 | exon | 58821816 | 58822060 | 58821816 | ID=Msa0128980-mRNA-1:exon:18976;Parent=Msa0128980-mRNA-1 |
| chr1_3 | exon | 58822171 | 58822410 | 58822171 | ID=Msa0128980-mRNA-1:exon:18977;Parent=Msa0128980-mRNA-1 |
| chr1_3 | exon | 58822797 | 58822934 | 58822797 | ID=Msa0128980-mRNA-1:exon:18978;Parent=Msa0128980-mRNA-1 |
| chr1_3 | exon | 58823945 | 58824370 | 58823945 | ID=Msa0128980-mRNA-1:exon:18979;Parent=Msa0128980-mRNA-1 |
| chr1_3 | five_prime_UTR | 58819605 | 58819795 | 58819605 | ID=Msa0128980-mRNA-1:five_prime_utr;Parent=Msa0128980-mRNA-1 |
| chr1_3 | CDS | 58819796 | 58819943 | 58819796 | ID=Msa0128980-mRNA-1:cds;Parent=Msa0128980-mRNA-1 |
| chr1_3 | CDS | 58821816 | 58822060 | 58821816 | ID=Msa0128980-mRNA-1:cds;Parent=Msa0128980-mRNA-1 |
| chr1_3 | CDS | 58822171 | 58822410 | 58822171 | ID=Msa0128980-mRNA-1:cds;Parent=Msa0128980-mRNA-1 |
| chr1_3 | CDS | 58822797 | 58822934 | 58822797 | ID=Msa0128980-mRNA-1:cds;Parent=Msa0128980-mRNA-1 |
| chr1_3 | CDS | 58823945 | 58824031 | 58823945 | ID=Msa0128980-mRNA-1:cds;Parent=Msa0128980-mRNA-1 |
| chr1_3 | three_prime_UTR | 58824032 | 58824370 | 58824032 | ID=Msa0128980-mRNA-1:three_prime_utr;Parent=Msa0128980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
