AlfalfaGEDB | Msa0129630

M. sativa cultivar zhongmu-4 / Msa0129630

KEGG: -
GO: -
PFAM: PF14868.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129630	A0A396JSC8	92.062	1096	25	2	1	1096	1	1034	0.0	2021

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037710	Msa0129630	0.813637	2.313957e-51	-8.615850e-47
Msa0129630	Msa0414880	0.812161	4.872459e-51	-8.615850e-47
Msa0129630	Msa0502510	0.800081	1.703998e-48	-8.615850e-47
Msa0129630	Msa1078830	0.808073	3.704541e-50	-8.615850e-47
Msa0129630	Msa1207330	0.801407	9.136571e-49	-8.615850e-47
Msa0129630	Msa1331300	0.812133	4.941343e-51	-8.615850e-47
Msa0129630	Msa1412420	0.948553	7.509325e-107	-8.615850e-47
Msa0129630	Msa1427870	0.965188	2.784828e-124	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129630	MtrunA17_Chr1g0196651	92.062	1096	25	2	1	1096	1	1034	0.0	2021

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129630	AT1G04650.1	38.873	1083	560	10	12	1084	7	997	0.0	708
Msa0129630	AT1G04650.2	41.046	899	496	9	196	1084	21	895	0.0	654

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Find 184 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGAACAGAAGCTTG+AGG	0.694528	1_3:+59677545	Msa0129630:CDS
AAAATGGCGGAAGGAAACTC+CGG	0.586569	1_3:+59672429	None:intergenic
AAAGAAGTTCTCTAGTAAGA+AGG	0.520959	1_3:-59677982	None:intergenic
AAATAAAGGACCATTCTCTT+CGG	0.505358	1_3:+59678914	Msa0129630:CDS
AAATGCATCAGCAGTGATAG+CGG	0.641985	1_3:+59677464	Msa0129630:CDS
AACATCAATGACCGTGTGTG+CGG	0.598742	1_3:-59676923	None:intergenic
AACATTCCAGCCAGCTCACT+GGG	0.503043	1_3:+59675585	Msa0129630:CDS
AACTCTCACTCTTGGAGTCA+AGG	0.528872	1_3:+59674235	Msa0129630:CDS
AACTGCAAGCTCGACCTATT+GGG	0.397950	1_3:+59674109	Msa0129630:CDS
AACTGGAATGCCAAACAAAC+CGG	0.477551	1_3:-59678417	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCAGTGAACAGAATGAAA+AGG	-	chr1_3:59672544-59672563	None:intergenic	30.0%
AAAATGAAAGCAAAACGAAG+TGG	-	chr1_3:59672588-59672607	None:intergenic	30.0%
CAAGCTTAAATTTCCTAGAT+CGG	-	chr1_3:59672647-59672666	None:intergenic	30.0%
TTCAATATAATCGCATGTGT+CGG	-	chr1_3:59672947-59672966	None:intergenic	30.0%
AGAAACTCTAAATGTATGCT+TGG	+	chr1_3:59673183-59673202	Msa0129630:intron	30.0%
AAAACTTACATTTGACTCTG+AGG	-	chr1_3:59673218-59673237	None:intergenic	30.0%
CTAAATCAAGGTCTTAATCA+AGG	+	chr1_3:59673411-59673430	Msa0129630:intron	30.0%
CACACACAAATTACTAAACA+TGG	-	chr1_3:59673523-59673542	None:intergenic	30.0%
GCAAATAGACATCATATGAA+CGG	-	chr1_3:59673565-59673584	None:intergenic	30.0%
CTTAGAATGGTAATATTGCA+TGG	+	chr1_3:59673757-59673776	Msa0129630:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	59672432	59679886	59672432	ID=Msa0129630;Name=Msa0129630
chr1_3	mRNA	59672432	59679886	59672432	ID=Msa0129630-mRNA-1;Parent=Msa0129630;Name=Msa0129630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0.25\|0.11\|0.77\|1\|1\|9\|95\|1096
chr1_3	exon	59672432	59672494	59672432	ID=Msa0129630-mRNA-1:exon:19428;Parent=Msa0129630-mRNA-1
chr1_3	exon	59672616	59672744	59672616	ID=Msa0129630-mRNA-1:exon:19429;Parent=Msa0129630-mRNA-1
chr1_3	exon	59673476	59673510	59673476	ID=Msa0129630-mRNA-1:exon:19430;Parent=Msa0129630-mRNA-1
chr1_3	exon	59674073	59674256	59674073	ID=Msa0129630-mRNA-1:exon:19431;Parent=Msa0129630-mRNA-1
chr1_3	exon	59674355	59674444	59674355	ID=Msa0129630-mRNA-1:exon:19432;Parent=Msa0129630-mRNA-1
chr1_3	exon	59675523	59675606	59675523	ID=Msa0129630-mRNA-1:exon:19433;Parent=Msa0129630-mRNA-1
chr1_3	exon	59676223	59676372	59676223	ID=Msa0129630-mRNA-1:exon:19434;Parent=Msa0129630-mRNA-1
chr1_3	exon	59676889	59678480	59676889	ID=Msa0129630-mRNA-1:exon:19435;Parent=Msa0129630-mRNA-1
chr1_3	exon	59678828	59679886	59678828	ID=Msa0129630-mRNA-1:exon:19436;Parent=Msa0129630-mRNA-1
chr1_3	CDS	59672432	59672494	59672432	ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1
chr1_3	CDS	59672616	59672744	59672616	ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1
chr1_3	CDS	59673476	59673510	59673476	ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1
chr1_3	CDS	59674073	59674256	59674073	ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1
chr1_3	CDS	59674355	59674444	59674355	ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1
chr1_3	CDS	59675523	59675606	59675523	ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1
chr1_3	CDS	59676223	59676372	59676223	ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1
chr1_3	CDS	59676889	59678480	59676889	ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1
chr1_3	CDS	59678828	59679791	59678828	ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1
chr1_3	three_prime_UTR	59679792	59679886	59679792	ID=Msa0129630-mRNA-1:three_prime_utr;Parent=Msa0129630-mRNA-1

Gene Sequence

>Msa0129630

ATGGCGGAAGGAAACTCCGGCGCCGATATCCACCGTATACTCGCCGCCGTTAAATCCTCCGAGGTTGTTGAAGATCGTGTTCAATTATTCACCGATCTAGGAAATTTAAGCTTGAAAGAAGCTTCTGAATCCGATCATGCTTCCGTCATGAATTGCCTTGTAGTATCCTTTCTTCACTTCATCTTCTTCAATGCGCGTGATGCACACTCATCCAAGATGGTCGAGCTTACTCTACTACTTGTTTGCATTGTTGCTTCCACCTTAACTGCAAGCTCGACCTATTGGGAAACTTTCACATGTTTGGATGTTACCCAATGCATGCTAAACAGAAGTATTCTACAGGTCGCCTTAAAAAACATAGATTTTAACCTACCTAGCTGTTTACTGCAAACTCTCACTCTTGGAGTCAAGGCTAGTATATGGTCTGGCAAACATCTACAAATGACCCTGTTGTCGACAGAAGAATCTCAGGAAGATGAACACAGCTCTGCATTTTACCAGGAAATTTCCATTGATGATCATCTCAGTCTGTCGGTGAGTCTCCTTCCTTGGTTATGCTGTGCAACATTCCAGCCAGCTCACTGGCTTCTTTTGGAGATCCTAAGATTTTCAGCATCAGCTTTTTCGGCCTTGTTGAAATTCACCGATATTAGTAACAAGGAATTGATGGACAATGTTGAAATTTTCACTATAGAAGTGTTAAATCTAACTAAAGATTCTATATCTGAAGCCAAGAAAATTCAATCATTTGGATCAGAGATATTAAAGGCCGCACACACGGTCATTGATGTTGTTGTAAAGCTATGCAAGGTGCGTTCTGAATTAATAAACTGGGAGGCTTGTGATGAAAAACAGTCGAGGTTTGACAAACCTATTCATGTTGTCCATGCTATCAACATAACCAAATACACAATAGAAAAGCTGTCTCAAATTGGTGTTCTTGCTTCGAATGATGGTGGCAGTTTAGTCAATATTCTTAGTATCTCCTGGAAAGGTGTTGTTTCTTTGCTTCAAATTGGTGGGGGGCATCTTACAGAAGTGAATATAGCAAATATAGTGGTATCTTTGCTTGTATTAATAGCCGAGCCTTTGAAATGTGCTGCTGAGGTTTGGTCATCATCACTGAATGAAACTATTTCTGTAACTGAAGCTAAAAGGATATTTGTACCAGTGAAATTTTACCTGATCAATGCAGTTAAAATATGCTCACTGTATCCTCATCAGACCTACACAGTGTACAGGGAGATCACACACTGCATTCTCACTATCACTTCATTTTGGGTTTTAGCAAACAGTGAAAATCTTCTGAAAAATGCATCAGCAGTGATAGCGGAGCTATTGGAGGAAACAACCTTGGATTTGGTGTTGTCTTTGCTAATATCTGATAAACTAAAACTGGAACAGAAGCTTGAGGTAGTGGAATGGCTATTTGTTAATGAAGATTCTCATTCTGGCCTTGATTGTCCAACATTAGCTGCTTGTAACTTTACATTGGTTAACAAAATATTTTTAAGTAGCTGTGAAGACATAAGCCGATCAAGAGTACTAATACTTGGTCGAGTTGTTTTGTTTATTAACTTCCTTAAATATTCTCTCAAGCTTGATGAGGATATGAAAGTAGCGATTACTCAGAAGCTTAATTGGTTTTTGGATGTTTTAGTTGAGGAAGATGTATATTCTTGTATGCTTGTTTTGCAACTTCCATCATTATCTGGCTCTGGAAAAACAGCTGAACTGGTGTGGCAGCCTATGTTTACTCTCCTCTTGCAAGCATTCAAAACCTTCATGATTGTGATCTCTTCAAGTACAGCTTGGAGGGAGTTGCAGTCCTTCTTACTAGAGAACTTCTTTCATCCTCACTTCCTTTGTTTGGAGATTGTGATGCAATGCTGGTGCTTTGTACTGCAATATGCTGAAACACAAATGGCAAACAACATAATTAGCAAACTATGTTCATTACTTAAGCTGTTGGGATCCTCCGACTCAGTTTTCCTTCCTCATTCTTCTTTCAGGAAATTGACAAGATCATTTTGCTTGCTTCTTACCTGTTGTGAAAAATCAGTGGTTGAAGAGGTGTTTATGTCAATTGTTGGTGATCGGAGATCACACTTGTCACAAATTTTGTGTTTGGCTCTGTTCATTGAAGGGTTTTCGCTTGATTTGCTGTCTGATGAGTTGAGAAAAACTTTCATTCAAACAATTATATCTGATTATTTTGACTTCATCGACAACTTTAATGAAGCTTCATTGACGGCATGCTCCTCCGGTTTGTTTGGCATTCCAGTTTTTATTCTCTCTGCTTCTTTGCAATCTTCTTTGCAATCAATCAAGGAAAGACTACCTGAGATTGATGCAAGGGCCATAAAGTTTTTGGTTTCAATTAGTTCTAACTACAAAAGTACTGTTGACAAAGAAATAAAGGACCATTCTCTTCGGCTTTTTGGTGAAATTCTAGTGATCATTTCATATCTGGAACATCTATACAAATCGAATGATATTGAACAGGCCATAATACAGATTGAAAATATCTTTATCACTGAGCCTCCAGTCCTTTTGTACAAATGCAAACCACATTTGGCTCAGTTCCTCACTGGACTTGTTCACATGGAATTTTCAGAAAGTGATGATGGTGATGCAAAAAGTCGTGCTGCATGGGAATTATTTCACTTGATCTTGACAGAGCGGCACTGGGCATTCACACATTTAGCATTAACTGCATTTGGATATTTTGCTGCTAACACAACTTGCTGTCAGCTATGGAGATTTCTTCCACCGGATGCAGCACTTTCATATGATATAATTTCAGGAACAGAGACAACTAAGGAGAGATTTTATGCTGAGCTTAGAGAATTTCTTAATAAGCAAAATGCTCTTCTAACAGTTGCACCAAGTCCTGAACAGCTTGAGCTGCTACGACGAGAAGGTTTTATGCTAAAGCAGATGATCCATAACATTTCAGTCAATGCTGAAAGGAGAGATGGATGTGAGAGCATGGAAATTGATGACAAGAACCAATTAAATAGCATGGAAGTCGATGACATGAGCCAAACAAATAAAAAAAGGAAACTTCCAGCAGGAATTAGCAAAGGAGTGGAATTGCTGAAAAACGGTTTGAAGATTATTGGTGACGGTCTTTCAGAGTGGCAGCTTAATCAGTTTGAAACCAATGAACTGCATGTCAAGTATTCTGCTCAGTTTTCTCGACTTGAAGATGCAATTACTCACTTCGAGGAATTGGCTGGGAGTGGCGAGGTATGTTTGTCTCCTATTCAGAGCAATTTGCGAGGTTGA

Protein sequence

>Msa0129630

MAEGNSGADIHRILAAVKSSEVVEDRVQLFTDLGNLSLKEASESDHASVMNCLVVSFLHFIFFNARDAHSSKMVELTLLLVCIVASTLTASSTYWETFTCLDVTQCMLNRSILQVALKNIDFNLPSCLLQTLTLGVKASIWSGKHLQMTLLSTEESQEDEHSSAFYQEISIDDHLSLSVSLLPWLCCATFQPAHWLLLEILRFSASAFSALLKFTDISNKELMDNVEIFTIEVLNLTKDSISEAKKIQSFGSEILKAAHTVIDVVVKLCKVRSELINWEACDEKQSRFDKPIHVVHAINITKYTIEKLSQIGVLASNDGGSLVNILSISWKGVVSLLQIGGGHLTEVNIANIVVSLLVLIAEPLKCAAEVWSSSLNETISVTEAKRIFVPVKFYLINAVKICSLYPHQTYTVYREITHCILTITSFWVLANSENLLKNASAVIAELLEETTLDLVLSLLISDKLKLEQKLEVVEWLFVNEDSHSGLDCPTLAACNFTLVNKIFLSSCEDISRSRVLILGRVVLFINFLKYSLKLDEDMKVAITQKLNWFLDVLVEEDVYSCMLVLQLPSLSGSGKTAELVWQPMFTLLLQAFKTFMIVISSSTAWRELQSFLLENFFHPHFLCLEIVMQCWCFVLQYAETQMANNIISKLCSLLKLLGSSDSVFLPHSSFRKLTRSFCLLLTCCEKSVVEEVFMSIVGDRRSHLSQILCLALFIEGFSLDLLSDELRKTFIQTIISDYFDFIDNFNEASLTACSSGLFGIPVFILSASLQSSLQSIKERLPEIDARAIKFLVSISSNYKSTVDKEIKDHSLRLFGEILVIISYLEHLYKSNDIEQAIIQIENIFITEPPVLLYKCKPHLAQFLTGLVHMEFSESDDGDAKSRAAWELFHLILTERHWAFTHLALTAFGYFAANTTCCQLWRFLPPDAALSYDIISGTETTKERFYAELREFLNKQNALLTVAPSPEQLELLRREGFMLKQMIHNISVNAERRDGCESMEIDDKNQLNSMEVDDMSQTNKKRKLPAGISKGVELLKNGLKIIGDGLSEWQLNQFETNELHVKYSAQFSRLEDAITHFEELAGSGEVCLSPIQSNLRG*