Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129630 | A0A396JSC8 | 92.062 | 1096 | 25 | 2 | 1 | 1096 | 1 | 1034 | 0.0 | 2021 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037710 | Msa0129630 | 0.813637 | 2.313957e-51 | -8.615850e-47 |
| Msa0129630 | Msa0414880 | 0.812161 | 4.872459e-51 | -8.615850e-47 |
| Msa0129630 | Msa0502510 | 0.800081 | 1.703998e-48 | -8.615850e-47 |
| Msa0129630 | Msa1078830 | 0.808073 | 3.704541e-50 | -8.615850e-47 |
| Msa0129630 | Msa1207330 | 0.801407 | 9.136571e-49 | -8.615850e-47 |
| Msa0129630 | Msa1331300 | 0.812133 | 4.941343e-51 | -8.615850e-47 |
| Msa0129630 | Msa1412420 | 0.948553 | 7.509325e-107 | -8.615850e-47 |
| Msa0129630 | Msa1427870 | 0.965188 | 2.784828e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129630 | MtrunA17_Chr1g0196651 | 92.062 | 1096 | 25 | 2 | 1 | 1096 | 1 | 1034 | 0.0 | 2021 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129630 | AT1G04650.1 | 38.873 | 1083 | 560 | 10 | 12 | 1084 | 7 | 997 | 0.0 | 708 |
| Msa0129630 | AT1G04650.2 | 41.046 | 899 | 496 | 9 | 196 | 1084 | 21 | 895 | 0.0 | 654 |
Find 184 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCCTCATTCTTCTTTC+AGG | 0.081998 | 1_3:+59678144 | Msa0129630:CDS |
| CAAGCTTGAGAGAATATTTA+AGG | 0.158566 | 1_3:-59677734 | None:intergenic |
| TTCTCACTATCACTTCATTT+TGG | 0.164804 | 1_3:+59677412 | Msa0129630:CDS |
| CGACTTCCATGCTATTTAAT+TGG | 0.194433 | 1_3:-59679512 | None:intergenic |
| GTTAATGAAGATTCTCATTC+TGG | 0.243809 | 1_3:+59677585 | Msa0129630:CDS |
| TTATGTTCTGCAGCTTCTTT+TGG | 0.246930 | 1_3:+59676210 | Msa0129630:intron |
| TCTAGTGATCATTTCATATC+TGG | 0.247729 | 1_3:+59678951 | Msa0129630:CDS |
| CGATTACTCAGAAGCTTAAT+TGG | 0.262276 | 1_3:+59677775 | Msa0129630:CDS |
| TCATCCTCACTTCCTTTGTT+TGG | 0.264775 | 1_3:+59678004 | Msa0129630:CDS |
| CAGCATTGACTGAAATGTTA+TGG | 0.283833 | 1_3:-59679446 | None:intergenic |
| TTGCAACTTCCATCATTATC+TGG | 0.286370 | 1_3:+59677846 | Msa0129630:CDS |
| CAATTCCTTGTTACTAATAT+CGG | 0.290844 | 1_3:-59676281 | None:intergenic |
| TTGGGAAACTTTCACATGTT+TGG | 0.293444 | 1_3:+59674127 | Msa0129630:CDS |
| CTTTCATATGATATAATTTC+AGG | 0.293788 | 1_3:+59679285 | Msa0129630:CDS |
| CATTTAGCATTAACTGCATT+TGG | 0.306514 | 1_3:+59679201 | Msa0129630:CDS |
| AATATCTGATAAACTAAAAC+TGG | 0.307618 | 1_3:+59677530 | Msa0129630:CDS |
| AAGCAGAAAATTCAATCATT+TGG | 0.307925 | 1_3:+59676883 | Msa0129630:intron |
| CGTAGCAGCTCAAGCTGTTC+AGG | 0.310698 | 1_3:-59679393 | None:intergenic |
| TGCGTTCTGAATTAATAAAC+TGG | 0.317909 | 1_3:+59676965 | Msa0129630:CDS |
| GGAGGAAACAACCTTGGATT+TGG | 0.320498 | 1_3:+59677494 | Msa0129630:CDS |
| GTTGTTTCTTTGCTTCAAAT+TGG | 0.328294 | 1_3:+59677150 | Msa0129630:CDS |
| TTTCTGTAACTGAAGCTAAA+AGG | 0.334035 | 1_3:+59677289 | Msa0129630:CDS |
| AAGCTGATGCTGAAAATCTT+AGG | 0.334216 | 1_3:-59676237 | None:intergenic |
| TAACTGCAAGCTCGACCTAT+TGG | 0.334725 | 1_3:+59674108 | Msa0129630:CDS |
| ATTTGGATCAGAGATATTAA+AGG | 0.341131 | 1_3:+59676900 | Msa0129630:CDS |
| AATTACTCACTTCGAGGAAT+TGG | 0.343356 | 1_3:+59679716 | Msa0129630:CDS |
| GCATGCTCCTCCGGTTTGTT+TGG | 0.344036 | 1_3:+59678407 | Msa0129630:CDS |
| CAAAGAAACAACACCTTTCC+AGG | 0.352316 | 1_3:-59677139 | None:intergenic |
| GTACAAATGCAAACCACATT+TGG | 0.371106 | 1_3:+59679056 | Msa0129630:CDS |
| TTTCTTTGCTTCAAATTGGT+GGG | 0.374180 | 1_3:+59677154 | Msa0129630:CDS |
| ATAGAAAAGCTGTCTCAAAT+TGG | 0.376969 | 1_3:+59677066 | Msa0129630:CDS |
| GAGATTCTTCTGTCGACAAC+AGG | 0.378557 | 1_3:-59674390 | None:intergenic |
| TACTGTTGACAAAGAAATAA+AGG | 0.379756 | 1_3:+59678900 | Msa0129630:CDS |
| ATTTAACGGCGGCGAGTATA+CGG | 0.383964 | 1_3:-59672464 | None:intergenic |
| GTTCAATTATTCACCGATCT+AGG | 0.386018 | 1_3:+59672631 | Msa0129630:CDS |
| GTGGTTTGCATTTGTACAAA+AGG | 0.397409 | 1_3:-59679050 | None:intergenic |
| AACTGCAAGCTCGACCTATT+GGG | 0.397950 | 1_3:+59674109 | Msa0129630:CDS |
| AGCAGTGATAGCGGAGCTAT+TGG | 0.398983 | 1_3:+59677473 | Msa0129630:CDS |
| TTGTTAATTAGGCTAGTATA+TGG | 0.402043 | 1_3:+59674344 | Msa0129630:intron |
| TGAAATGTGCTGCTGAGGTT+TGG | 0.402761 | 1_3:+59677244 | Msa0129630:CDS |
| TGATCTTGACAGAGCGGCAC+TGG | 0.406282 | 1_3:+59679169 | Msa0129630:CDS |
| ATAGGTCGAGCTTGCAGTTA+AGG | 0.406436 | 1_3:-59674105 | None:intergenic |
| TCATTGACGGCATGCTCCTC+CGG | 0.409903 | 1_3:+59678398 | Msa0129630:CDS |
| TACTTCTGTTTAGCATGCAT+TGG | 0.409935 | 1_3:-59674157 | None:intergenic |
| AGCTCAAGCTGTTCAGGACT+TGG | 0.411704 | 1_3:-59679387 | None:intergenic |
| TGTTTGGCTCTGTTCATTGA+AGG | 0.412535 | 1_3:+59678278 | Msa0129630:CDS |
| ATACTTGACATGCAGTTCAT+TGG | 0.417288 | 1_3:-59679664 | None:intergenic |
| TCAATATTCTTAGTATCTCC+TGG | 0.423343 | 1_3:+59677121 | Msa0129630:CDS |
| CTTTAATGAAGCTTCATTGA+CGG | 0.432701 | 1_3:+59678385 | Msa0129630:CDS |
| ATAGCATGGACAACATGAAT+AGG | 0.438166 | 1_3:-59677024 | None:intergenic |
| TATTAGTAACAAGGAATTGA+TGG | 0.445950 | 1_3:+59676285 | Msa0129630:CDS |
| GGAACAGAAGCTTGAGGTAG+TGG | 0.446616 | 1_3:+59677551 | Msa0129630:CDS |
| TTCTTTGCTTCAAATTGGTG+GGG | 0.449517 | 1_3:+59677155 | Msa0129630:CDS |
| TGTCGGTGAGTCTCCTTCCT+TGG | 0.455419 | 1_3:+59675551 | Msa0129630:CDS |
| ACTTCTGTTTAGCATGCATT+GGG | 0.455549 | 1_3:-59674156 | None:intergenic |
| CCTCGCAAATTGCTCTGAAT+AGG | 0.459283 | 1_3:-59679765 | None:intergenic |
| ATGGCCCTTGCATCAATCTC+AGG | 0.459700 | 1_3:-59678841 | None:intergenic |
| ATGTTCATTACTTAAGCTGT+TGG | 0.460578 | 1_3:+59678103 | Msa0129630:CDS |
| ACATGTGAAAGTTTCCCAAT+AGG | 0.460912 | 1_3:-59674123 | None:intergenic |
| ACTCCTTTGCTAATTCCTGC+TGG | 0.462429 | 1_3:-59679570 | None:intergenic |
| GGTGTTCTTGCTTCGAATGA+TGG | 0.465585 | 1_3:+59677087 | Msa0129630:CDS |
| ACTCACTTCGAGGAATTGGC+TGG | 0.466064 | 1_3:+59679720 | Msa0129630:CDS |
| TGTTCATTACTTAAGCTGTT+GGG | 0.467901 | 1_3:+59678104 | Msa0129630:CDS |
| CTTCCATCATTATCTGGCTC+TGG | 0.468283 | 1_3:+59677852 | Msa0129630:CDS |
| GAGAGATGGATGTGAGAGCA+TGG | 0.468330 | 1_3:+59679473 | Msa0129630:CDS |
| GTTTCTTTGCTTCAAATTGG+TGG | 0.468414 | 1_3:+59677153 | Msa0129630:CDS |
| CAAGCTTAAATTTCCTAGAT+CGG | 0.468630 | 1_3:-59672644 | None:intergenic |
| CGATCAAGAGTACTAATACT+TGG | 0.468752 | 1_3:+59677687 | Msa0129630:CDS |
| TCTTTGCTTCAAATTGGTGG+GGG | 0.472659 | 1_3:+59677156 | Msa0129630:CDS |
| GCAATATGCTGAAACACAAA+TGG | 0.474449 | 1_3:+59678058 | Msa0129630:CDS |
| AACTGGAATGCCAAACAAAC+CGG | 0.477551 | 1_3:-59678417 | None:intergenic |
| GAAGAAGATGAAGTGAAGAA+AGG | 0.478004 | 1_3:-59672719 | None:intergenic |
| TGGAGATTGTGATGCAATGC+TGG | 0.478103 | 1_3:+59678024 | Msa0129630:CDS |
| GCTCGCCTCGGAGGATTTAA+CGG | 0.480743 | 1_3:-59672478 | None:intergenic |
| CAACATTCCAGCCAGCTCAC+TGG | 0.482695 | 1_3:+59675584 | Msa0129630:CDS |
| CAAATCGAATGATATTGAAC+AGG | 0.484736 | 1_3:+59678984 | Msa0129630:CDS |
| TTACTGCAAACTCTCACTCT+TGG | 0.489075 | 1_3:+59674227 | Msa0129630:CDS |
| TTGCATTTGTACAAAAGGAC+TGG | 0.493090 | 1_3:-59679045 | None:intergenic |
| ATCTCACAGCTCGACCATCT+TGG | 0.494070 | 1_3:-59673495 | None:intergenic |
| GGCGAGTATACGGTGGATAT+CGG | 0.496864 | 1_3:-59672454 | None:intergenic |
| ACTATAAAACAAACATCAAA+GGG | 0.498557 | 1_3:-59679795 | None:intergenic |
| AACATTCCAGCCAGCTCACT+GGG | 0.503043 | 1_3:+59675585 | Msa0129630:CDS |
| TACTATAAAACAAACATCAA+AGG | 0.505082 | 1_3:-59679796 | None:intergenic |
| AAATAAAGGACCATTCTCTT+CGG | 0.505358 | 1_3:+59678914 | Msa0129630:CDS |
| CTCTTCAAGTACAGCTTGGA+GGG | 0.511034 | 1_3:+59677950 | Msa0129630:CDS |
| GAGGTGTTTATGTCAATTGT+TGG | 0.511061 | 1_3:+59678224 | Msa0129630:CDS |
| TTCGAGGAATTGGCTGGGAG+TGG | 0.511953 | 1_3:+59679726 | Msa0129630:CDS |
| ATCAGACCTACACAGTGTAC+AGG | 0.514130 | 1_3:+59677373 | Msa0129630:CDS |
| CAGCTAATGTTGGACAATCA+AGG | 0.514656 | 1_3:-59677608 | None:intergenic |
| CAGACTGAGATGATCATCAA+TGG | 0.516467 | 1_3:-59675530 | None:intergenic |
| CTTTGCTTCAAATTGGTGGG+GGG | 0.516713 | 1_3:+59677157 | Msa0129630:CDS |
| TGATCTCTTCAAGTACAGCT+TGG | 0.518395 | 1_3:+59677946 | Msa0129630:CDS |
| TTGATCAGGTAAAATTTCAC+TGG | 0.518498 | 1_3:-59677321 | None:intergenic |
| CATTTGGCTCAGTTCCTCAC+TGG | 0.520913 | 1_3:+59679072 | Msa0129630:CDS |
| AAAGAAGTTCTCTAGTAAGA+AGG | 0.520959 | 1_3:-59677982 | None:intergenic |
| TTTGCAGTAAACAGCTAGGT+AGG | 0.522639 | 1_3:-59674214 | None:intergenic |
| GTTGTCGACAGAAGAATCTC+AGG | 0.522837 | 1_3:+59674393 | Msa0129630:CDS |
| CATCAACCCAGTGAGCTGGC+TGG | 0.523998 | 1_3:-59675591 | None:intergenic |
| TTTCCAGAGCCAGATAATGA+TGG | 0.524410 | 1_3:-59677855 | None:intergenic |
| AGTGAATATAGCAAATATAG+TGG | 0.524490 | 1_3:+59677191 | Msa0129630:CDS |
| ATTCATGACGGAAGCATGAT+CGG | 0.524988 | 1_3:-59672683 | None:intergenic |
| GCCTTTGAAATGTGCTGCTG+AGG | 0.526380 | 1_3:+59677239 | Msa0129630:CDS |
| ACACAACTTGCTGTCAGCTA+TGG | 0.527197 | 1_3:+59679238 | Msa0129630:CDS |
| AACTCTCACTCTTGGAGTCA+AGG | 0.528872 | 1_3:+59674235 | Msa0129630:CDS |
| GCTAAACAGAAGTATTCTAC+AGG | 0.531874 | 1_3:+59674166 | Msa0129630:CDS |
| TCATATGAAAGTGCTGCATC+CGG | 0.537804 | 1_3:-59679273 | None:intergenic |
| GTTTGGCTCTGTTCATTGAA+GGG | 0.538387 | 1_3:+59678279 | Msa0129630:CDS |
| TGATCATCAACCCAGTGAGC+TGG | 0.538682 | 1_3:-59675595 | None:intergenic |
| AGCTGCTTGTAACTTTACAT+TGG | 0.538952 | 1_3:+59677626 | Msa0129630:CDS |
| AATTAGGCTAGTATATGGTC+TGG | 0.540868 | 1_3:+59674349 | Msa0129630:intron |
| CAAGAACCAATTAAATAGCA+TGG | 0.544781 | 1_3:+59679506 | Msa0129630:CDS |
| ATTTGGTTATGTTGATAGCA+TGG | 0.545431 | 1_3:-59677038 | None:intergenic |
| TCTCTTCAAGTACAGCTTGG+AGG | 0.545970 | 1_3:+59677949 | Msa0129630:CDS |
| GCTATTGGAGGAAACAACCT+TGG | 0.546923 | 1_3:+59677488 | Msa0129630:CDS |
| GTCAATGCTGAAAGGAGAGA+TGG | 0.547419 | 1_3:+59679459 | Msa0129630:CDS |
| CAAGTATTAGTACTCTTGAT+CGG | 0.548577 | 1_3:-59677686 | None:intergenic |
| TGAAGAGATCACAATCATGA+AGG | 0.554036 | 1_3:-59677934 | None:intergenic |
| TTATGTCAATTGTTGGTGAT+CGG | 0.555097 | 1_3:+59678231 | Msa0129630:CDS |
| AGATGCAATTACTCACTTCG+AGG | 0.557847 | 1_3:+59679710 | Msa0129630:CDS |
| AGCAGCACATTTCAAAGGCT+CGG | 0.559189 | 1_3:-59677235 | None:intergenic |
| AGTGATAGCGGAGCTATTGG+AGG | 0.566440 | 1_3:+59677476 | Msa0129630:CDS |
| GATCTTGACAGAGCGGCACT+GGG | 0.570474 | 1_3:+59679170 | Msa0129630:CDS |
| AGAGTTTGCAGTAAACAGCT+AGG | 0.572784 | 1_3:-59674218 | None:intergenic |
| CTTGAGCTGCTACGACGAGA+AGG | 0.578244 | 1_3:+59679402 | Msa0129630:CDS |
| TTCAGGAACAGAGACAACTA+AGG | 0.578649 | 1_3:+59679302 | Msa0129630:CDS |
| TCCTGAAAGAAGAATGAGGA+AGG | 0.578946 | 1_3:-59678145 | None:intergenic |
| AAGTTACAAGCAGCTAATGT+TGG | 0.581575 | 1_3:-59677618 | None:intergenic |
| ATTCTTAGTATCTCCTGGAA+AGG | 0.582974 | 1_3:+59677126 | Msa0129630:CDS |
| AAAATGGCGGAAGGAAACTC+CGG | 0.586569 | 1_3:+59672429 | None:intergenic |
| CATTTGTACAAAAGGACTGG+AGG | 0.590917 | 1_3:-59679042 | None:intergenic |
| AACATCAATGACCGTGTGTG+CGG | 0.598742 | 1_3:-59676923 | None:intergenic |
| GGTCGAGCTTGCAGTTAAGG+TGG | 0.598914 | 1_3:-59674102 | None:intergenic |
| CTCACTTCGAGGAATTGGCT+GGG | 0.601390 | 1_3:+59679721 | Msa0129630:CDS |
| ATATTCTCTCAAGCTTGATG+AGG | 0.602071 | 1_3:+59677740 | Msa0129630:CDS |
| ACTACCTGAGATTGATGCAA+GGG | 0.602615 | 1_3:+59678837 | Msa0129630:CDS |
| AGCAGGAATTAGCAAAGGAG+TGG | 0.605019 | 1_3:+59679572 | Msa0129630:CDS |
| CCTCACTGGACTTGTTCACA+TGG | 0.605363 | 1_3:+59679086 | Msa0129630:CDS |
| TTGCACAGCATAACCAAGGA+AGG | 0.606135 | 1_3:-59675564 | None:intergenic |
| ACCTCAGCAGCACATTTCAA+AGG | 0.607870 | 1_3:-59677240 | None:intergenic |
| ATCTCCAAACAAAGGAAGTG+AGG | 0.608558 | 1_3:-59678008 | None:intergenic |
| TCAGACCTACACAGTGTACA+GGG | 0.610865 | 1_3:+59677374 | Msa0129630:CDS |
| GCTATGGAGATTTCTTCCAC+CGG | 0.617902 | 1_3:+59679254 | Msa0129630:CDS |
| TGATGATCATCTCAGTCTGT+CGG | 0.618224 | 1_3:+59675534 | Msa0129630:CDS |
| GATATTAAAGGCCGCACACA+CGG | 0.619564 | 1_3:+59676912 | Msa0129630:CDS |
| ACATTTCAGTCAATGCTGAA+AGG | 0.623736 | 1_3:+59679451 | Msa0129630:CDS |
| TGATGCACACTCATCCAAGA+TGG | 0.625184 | 1_3:+59673481 | Msa0129630:CDS |
| AGATTCTATATCTGAAGCCA+AGG | 0.626301 | 1_3:+59676351 | Msa0129630:CDS |
| GACTACCTGAGATTGATGCA+AGG | 0.626991 | 1_3:+59678836 | Msa0129630:CDS |
| GATCTCCCTGTACACTGTGT+AGG | 0.630525 | 1_3:-59677379 | None:intergenic |
| CAAAGACAACACCAAATCCA+AGG | 0.631055 | 1_3:-59677505 | None:intergenic |
| TATACGGTGGATATCGGCGC+CGG | 0.632910 | 1_3:-59672448 | None:intergenic |
| GCATCACAATCTCCAAACAA+AGG | 0.634537 | 1_3:-59678016 | None:intergenic |
| GGTTTGAAGATTATTGGTGA+CGG | 0.634783 | 1_3:+59679609 | Msa0129630:CDS |
| TATGAAAGTGCTGCATCCGG+TGG | 0.636471 | 1_3:-59679270 | None:intergenic |
| AGATTCTTCTGTCGACAACA+GGG | 0.636635 | 1_3:-59674389 | None:intergenic |
| ATGAGGAAGGAAAACTGAGT+CGG | 0.636841 | 1_3:-59678132 | None:intergenic |
| AATTTCCTGAAAGAAGAATG+AGG | 0.639283 | 1_3:-59678149 | None:intergenic |
| AAATGCATCAGCAGTGATAG+CGG | 0.641985 | 1_3:+59677464 | Msa0129630:CDS |
| CTTCCAGCAGGAATTAGCAA+AGG | 0.643071 | 1_3:+59679567 | Msa0129630:CDS |
| GTGAGGAACTGAGCCAAATG+TGG | 0.646782 | 1_3:-59679069 | None:intergenic |
| TACTACAAGGCAATTCATGA+CGG | 0.647298 | 1_3:-59672695 | None:intergenic |
| AGTGAAGAAAGGATACTACA+AGG | 0.649053 | 1_3:-59672708 | None:intergenic |
| AGGAAGGAAAACTGAGTCGG+AGG | 0.649594 | 1_3:-59678129 | None:intergenic |
| ATTCACCGATATTAGTAACA+AGG | 0.649686 | 1_3:+59676276 | Msa0129630:CDS |
| AGAAGCTTGAGGTAGTGGAA+TGG | 0.649896 | 1_3:+59677556 | Msa0129630:CDS |
| GCGTTCTGAATTAATAAACT+GGG | 0.651433 | 1_3:+59676966 | Msa0129630:CDS |
| TTCACTTGATCTTGACAGAG+CGG | 0.651465 | 1_3:+59679163 | Msa0129630:CDS |
| GTTCTTGCTTCGAATGATGG+TGG | 0.656126 | 1_3:+59677090 | Msa0129630:CDS |
| GGAATTGGCTGGGAGTGGCG+AGG | 0.656699 | 1_3:+59679731 | Msa0129630:CDS |
| TACACTGTGTAGGTCTGATG+AGG | 0.659409 | 1_3:-59677369 | None:intergenic |
| TTCTGAATTAATAAACTGGG+AGG | 0.670862 | 1_3:+59676969 | Msa0129630:CDS |
| CGCCTCGGAGGATTTAACGG+CGG | 0.688230 | 1_3:-59672475 | None:intergenic |
| TGTTGTTGTAAAGCTATGCA+AGG | 0.691450 | 1_3:+59676942 | Msa0129630:CDS |
| CGCCGCCGTTAAATCCTCCG+AGG | 0.692251 | 1_3:+59672473 | Msa0129630:CDS |
| ATGGAAGTAGCTCGCCTCGG+AGG | 0.692977 | 1_3:-59672487 | None:intergenic |
| AAAACTGGAACAGAAGCTTG+AGG | 0.694528 | 1_3:+59677545 | Msa0129630:CDS |
| TTGGTGACGGTCTTTCAGAG+TGG | 0.702019 | 1_3:+59679622 | Msa0129630:CDS |
| TGCAAGAGGAGAGTAAACAT+AGG | 0.703321 | 1_3:-59677900 | None:intergenic |
| CCTATTCAGAGCAATTTGCG+AGG | 0.704560 | 1_3:+59679765 | Msa0129630:CDS |
| TGGAATGCCAAACAAACCGG+AGG | 0.710686 | 1_3:-59678414 | None:intergenic |
| AATGTTGCACAGCATAACCA+AGG | 0.715536 | 1_3:-59675568 | None:intergenic |
| TAACGGCGGCGAGTATACGG+TGG | 0.718018 | 1_3:-59672461 | None:intergenic |
| CCATGTGAACAAGTCCAGTG+AGG | 0.723530 | 1_3:-59679086 | None:intergenic |
| AATATCGGTGAATTTCAACA+AGG | 0.727967 | 1_3:-59676266 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTATATATATAAAT+AGG | - | chr1_3:59678519-59678538 | None:intergenic | 0.0% |
| !!! | CTTTAAAGAAAATATAATAT+AGG | - | chr1_3:59675716-59675735 | None:intergenic | 10.0% |
| !!! | ACAATAAAATGAGTTTTATT+TGG | - | chr1_3:59673112-59673131 | None:intergenic | 15.0% |
| !!! | AAAGTACAAAATTAGTTTAA+AGG | - | chr1_3:59673140-59673159 | None:intergenic | 15.0% |
| !!! | TTTAAACTAATTTTGTACTT+TGG | + | chr1_3:59673139-59673158 | Msa0129630:intron | 15.0% |
| !! | AATTACTTACTAAATATGTT+CGG | - | chr1_3:59673251-59673270 | None:intergenic | 15.0% |
| !! | AATTGTAAATTTCTAAATCA+AGG | + | chr1_3:59673399-59673418 | Msa0129630:intron | 15.0% |
| !!! | TCTAAGATTTATATATTGAT+TGG | - | chr1_3:59673786-59673805 | None:intergenic | 15.0% |
| !!! | TTTGTTGTGTTTTTAAAAAA+CGG | + | chr1_3:59673812-59673831 | Msa0129630:intron | 15.0% |
| !!! | GTTAAAATCTATGTTTTTTA+AGG | - | chr1_3:59674195-59674214 | None:intergenic | 15.0% |
| !! | ATTACACAATATTGTTAATT+AGG | + | chr1_3:59674333-59674352 | Msa0129630:intron | 15.0% |
| !! | TTAATATTTGTATTATGACT+CGG | + | chr1_3:59675010-59675029 | Msa0129630:intron | 15.0% |
| !!! | ACATTGGTATAATTTAAAAT+GGG | - | chr1_3:59675079-59675098 | None:intergenic | 15.0% |
| !! | AACATTGGTATAATTTAAAA+TGG | - | chr1_3:59675080-59675099 | None:intergenic | 15.0% |
| !! | AAAAATGTCTCATAATATTT+GGG | + | chr1_3:59675791-59675810 | Msa0129630:intron | 15.0% |
| !!! | AGTTTTACTACAAATAATAA+TGG | + | chr1_3:59675913-59675932 | Msa0129630:intron | 15.0% |
| !! | AACATAAATATAAATGATTC+AGG | - | chr1_3:59676197-59676216 | None:intergenic | 15.0% |
| !! | ATGATAAATTTAAACATTCA+AGG | - | chr1_3:59676710-59676729 | None:intergenic | 15.0% |
| !! | TATAAATAGGCATATAATAA+TGG | - | chr1_3:59678506-59678525 | None:intergenic | 15.0% |
| !!! | GTCATTTTCTCAAAATTTTA+CGG | + | chr1_3:59672971-59672990 | Msa0129630:intron | 20.0% |
| !! | AGTACCATTGTTTAATAATT+CGG | - | chr1_3:59674038-59674057 | None:intergenic | 20.0% |
| !! | AAGAATATATATTCCTGAAA+AGG | - | chr1_3:59674302-59674321 | None:intergenic | 20.0% |
| !!! | AGGAGTTTTTTTTTTTTGAA+TGG | + | chr1_3:59674447-59674466 | Msa0129630:intron | 20.0% |
| !! | TACGTACATATACATATATA+TGG | + | chr1_3:59674544-59674563 | Msa0129630:intron | 20.0% |
| !! | ACGTACATATACATATATAT+GGG | + | chr1_3:59674545-59674564 | Msa0129630:intron | 20.0% |
| !! | TTATTTCAAATCACTAATCA+AGG | - | chr1_3:59674752-59674771 | None:intergenic | 20.0% |
| !!! | AAAAAAACACTTGTTGATTA+TGG | + | chr1_3:59674793-59674812 | Msa0129630:intron | 20.0% |
| !! | TCTATATGCTTTATGTATAT+AGG | + | chr1_3:59674889-59674908 | Msa0129630:intron | 20.0% |
| !! | GAAAAATGTCTCATAATATT+TGG | + | chr1_3:59675790-59675809 | Msa0129630:intron | 20.0% |
| !!! | CTCAGTAATTTAGAATATAT+TGG | + | chr1_3:59675820-59675839 | Msa0129630:intron | 20.0% |
| !! | ATATATTGGATTATCTCTTA+TGG | + | chr1_3:59675834-59675853 | Msa0129630:intron | 20.0% |
| !! | TATTATGTGTGAAGAAATAT+GGG | - | chr1_3:59675866-59675885 | None:intergenic | 20.0% |
| !! | ATATTATGTGTGAAGAAATA+TGG | - | chr1_3:59675867-59675886 | None:intergenic | 20.0% |
| !! | TTATTGTCATTATATGATCT+AGG | + | chr1_3:59676427-59676446 | Msa0129630:intron | 20.0% |
| !! | AGTGTAAATATGAAATGAAT+GGG | - | chr1_3:59676818-59676837 | None:intergenic | 20.0% |
| !! | AATATCTGATAAACTAAAAC+TGG | + | chr1_3:59677530-59677549 | Msa0129630:CDS | 20.0% |
| !! | AATTGAAACCAAAAACTTTA+TGG | - | chr1_3:59678863-59678882 | None:intergenic | 20.0% |
| !!! | GATATTTTCAATCTGTATTA+TGG | - | chr1_3:59679010-59679029 | None:intergenic | 20.0% |
| !! | CTTTCATATGATATAATTTC+AGG | + | chr1_3:59679285-59679304 | Msa0129630:CDS | 20.0% |
| !!! | GTTTCCTTTTTTTATTTGTT+TGG | - | chr1_3:59679548-59679567 | None:intergenic | 20.0% |
| !! | ACTATAAAACAAACATCAAA+GGG | - | chr1_3:59679798-59679817 | None:intergenic | 20.0% |
| !! | TACTATAAAACAAACATCAA+AGG | - | chr1_3:59679799-59679818 | None:intergenic | 20.0% |
| !!! | ATTAAATTTTACTGAACATC+TGG | - | chr1_3:59679867-59679886 | None:intergenic | 20.0% |
| ! | ATGTATAAACTAAACAGTCT+TGG | - | chr1_3:59673342-59673361 | None:intergenic | 25.0% |
| ! | TTATACTAAATAGCATATCG+CGG | - | chr1_3:59673885-59673904 | None:intergenic | 25.0% |
| ! | TATATATTCCTGAAAAGGTT+AGG | - | chr1_3:59674297-59674316 | None:intergenic | 25.0% |
| ! | TTGTTAATTAGGCTAGTATA+TGG | + | chr1_3:59674344-59674363 | Msa0129630:intron | 25.0% |
| ! | AAAAAAAAAAAACTCCTACC+TGG | - | chr1_3:59674444-59674463 | None:intergenic | 25.0% |
| ! | AGCAAGTTATAACTAAAAAG+TGG | + | chr1_3:59674604-59674623 | Msa0129630:intron | 25.0% |
| ! | AAAATGATTGAGAGTAAATG+TGG | - | chr1_3:59674716-59674735 | None:intergenic | 25.0% |
| !! | TTGGTATAATTTAAAATGGG+AGG | - | chr1_3:59675076-59675095 | None:intergenic | 25.0% |
| ! | TAGATAGATGAAAACAACAT+TGG | - | chr1_3:59675095-59675114 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGTCAGTTACAGA+GGG | - | chr1_3:59675276-59675295 | None:intergenic | 25.0% |
| !!! | ATTTTTAAAGTCAGTTACAG+AGG | - | chr1_3:59675277-59675296 | None:intergenic | 25.0% |
| !! | CTGTAACTGACTTTAAAAAT+AGG | + | chr1_3:59675277-59675296 | Msa0129630:intron | 25.0% |
| ! | ACTAATTCTTTAGTGTTTAG+AGG | + | chr1_3:59675333-59675352 | Msa0129630:intron | 25.0% |
| ! | ATGTCATGATTATTTATCCA+TGG | + | chr1_3:59675423-59675442 | Msa0129630:intron | 25.0% |
| ! | ATGTTTCCGTATTTATTATC+TGG | + | chr1_3:59675885-59675904 | Msa0129630:intron | 25.0% |
| ! | TACACTCCAGATAATAAATA+CGG | - | chr1_3:59675894-59675913 | None:intergenic | 25.0% |
| !! | AAATTGTTATTGACTGATTG+TGG | - | chr1_3:59675964-59675983 | None:intergenic | 25.0% |
| !! | TCATATTTGCTGAGATTATA+GGG | - | chr1_3:59676029-59676048 | None:intergenic | 25.0% |
| !! | TTCATATTTGCTGAGATTAT+AGG | - | chr1_3:59676030-59676049 | None:intergenic | 25.0% |
| ! | CAATTCCTTGTTACTAATAT+CGG | - | chr1_3:59676284-59676303 | None:intergenic | 25.0% |
| ! | TATTAGTAACAAGGAATTGA+TGG | + | chr1_3:59676285-59676304 | Msa0129630:CDS | 25.0% |
| ! | TAGAGATGATGTAATCAAAA+AGG | - | chr1_3:59676484-59676503 | None:intergenic | 25.0% |
| !!! | TTTTAGTATTTTTAGTCGTG+TGG | + | chr1_3:59676729-59676748 | Msa0129630:intron | 25.0% |
| ! | CAGTGTAAATATGAAATGAA+TGG | - | chr1_3:59676819-59676838 | None:intergenic | 25.0% |
| !! | AATGATTGAATTTTCTGCTT+AGG | - | chr1_3:59676883-59676902 | None:intergenic | 25.0% |
| ! | AAGCAGAAAATTCAATCATT+TGG | + | chr1_3:59676883-59676902 | Msa0129630:intron | 25.0% |
| ! | ATTTGGATCAGAGATATTAA+AGG | + | chr1_3:59676900-59676919 | Msa0129630:CDS | 25.0% |
| ! | AGTGAATATAGCAAATATAG+TGG | + | chr1_3:59677191-59677210 | Msa0129630:CDS | 25.0% |
| !!! | ATATTTTAACTGCATTGATC+AGG | - | chr1_3:59677338-59677357 | None:intergenic | 25.0% |
| ! | TGCAATCAATGTAAGTAATT+TGG | + | chr1_3:59678471-59678490 | Msa0129630:intron | 25.0% |
| ! | AGTGATCAACAGTAATTAAT+AGG | - | chr1_3:59678544-59678563 | None:intergenic | 25.0% |
| ! | AAAGTAAAACATATGCATGT+GGG | - | chr1_3:59678702-59678721 | None:intergenic | 25.0% |
| ! | AAAAGTAAAACATATGCATG+TGG | - | chr1_3:59678703-59678722 | None:intergenic | 25.0% |
| !! | ACATGCATATGTTTTACTTT+TGG | + | chr1_3:59678702-59678721 | Msa0129630:intron | 25.0% |
| !!! | ATATGTTTTACTTTTGGACT+TGG | + | chr1_3:59678708-59678727 | Msa0129630:intron | 25.0% |
| ! | TACTGTTGACAAAGAAATAA+AGG | + | chr1_3:59678900-59678919 | Msa0129630:CDS | 25.0% |
| ! | TGAGCCAAACAAATAAAAAA+AGG | + | chr1_3:59679541-59679560 | Msa0129630:CDS | 25.0% |
| ! | AAAAACGGTTTGAAGATTAT+TGG | + | chr1_3:59679603-59679622 | Msa0129630:CDS | 25.0% |
| AATCAGTGAACAGAATGAAA+AGG | - | chr1_3:59672544-59672563 | None:intergenic | 30.0% | |
| !! | TTCATTCTGTTCACTGATTT+AGG | + | chr1_3:59672545-59672564 | Msa0129630:intron | 30.0% |
| !! | TCATTCTGTTCACTGATTTA+GGG | + | chr1_3:59672546-59672565 | Msa0129630:intron | 30.0% |
| AAAATGAAAGCAAAACGAAG+TGG | - | chr1_3:59672588-59672607 | None:intergenic | 30.0% | |
| CAAGCTTAAATTTCCTAGAT+CGG | - | chr1_3:59672647-59672666 | None:intergenic | 30.0% | |
| TTCAATATAATCGCATGTGT+CGG | - | chr1_3:59672947-59672966 | None:intergenic | 30.0% | |
| AGAAACTCTAAATGTATGCT+TGG | + | chr1_3:59673183-59673202 | Msa0129630:intron | 30.0% | |
| AAAACTTACATTTGACTCTG+AGG | - | chr1_3:59673218-59673237 | None:intergenic | 30.0% | |
| ! | CAGAGTCAAATGTAAGTTTT+CGG | + | chr1_3:59673218-59673237 | Msa0129630:intron | 30.0% |
| CTAAATCAAGGTCTTAATCA+AGG | + | chr1_3:59673411-59673430 | Msa0129630:intron | 30.0% | |
| CACACACAAATTACTAAACA+TGG | - | chr1_3:59673523-59673542 | None:intergenic | 30.0% | |
| GCAAATAGACATCATATGAA+CGG | - | chr1_3:59673565-59673584 | None:intergenic | 30.0% | |
| ! | TCATAAATCAAGTCAAGTTG+TGG | - | chr1_3:59673596-59673615 | None:intergenic | 30.0% |
| CTTAGAATGGTAATATTGCA+TGG | + | chr1_3:59673757-59673776 | Msa0129630:intron | 30.0% | |
| TTGTGAAATAGATGCTATAG+CGG | + | chr1_3:59673909-59673928 | Msa0129630:intron | 30.0% | |
| ! | AATTTTGTCAATTGCAGAAG+TGG | - | chr1_3:59673989-59674008 | None:intergenic | 30.0% |
| ACTTCTGCAATTGACAAAAT+TGG | + | chr1_3:59673988-59674007 | Msa0129630:intron | 30.0% | |
| ! | AGTGCCGAATTATTAAACAA+TGG | + | chr1_3:59674031-59674050 | Msa0129630:intron | 30.0% |
| !! | AAGTAGTAGAGTACTGAAAT+AGG | - | chr1_3:59674066-59674085 | None:intergenic | 30.0% |
| ! | TTATATCTCCTAACCTTTTC+AGG | + | chr1_3:59674286-59674305 | Msa0129630:intron | 30.0% |
| TGTACGTATGTATGTATGTA+TGG | - | chr1_3:59674532-59674551 | None:intergenic | 30.0% | |
| TTTCAAATCACTAATCAAGG+AGG | - | chr1_3:59674749-59674768 | None:intergenic | 30.0% | |
| AAGATATCATATACCTTTGC+TGG | + | chr1_3:59674844-59674863 | Msa0129630:intron | 30.0% | |
| TACTACAAACAGTGCTTATT+TGG | + | chr1_3:59675300-59675319 | Msa0129630:intron | 30.0% | |
| !! | ATGTATACTAGCTTTAGCTT+GGG | - | chr1_3:59675386-59675405 | None:intergenic | 30.0% |
| !! | AATGTATACTAGCTTTAGCT+TGG | - | chr1_3:59675387-59675406 | None:intergenic | 30.0% |
| CATACACAGCAAGAAAATTT+AGG | - | chr1_3:59675491-59675510 | None:intergenic | 30.0% | |
| CTCAGCAAATATGAATAGAA+TGG | + | chr1_3:59676035-59676054 | Msa0129630:intron | 30.0% | |
| AAGAAAAGTTGTCAACACTT+TGG | - | chr1_3:59676062-59676081 | None:intergenic | 30.0% | |
| ! | TGTTGACAACTTTTCTTATG+TGG | + | chr1_3:59676065-59676084 | Msa0129630:intron | 30.0% |
| ! | GTTGACAACTTTTCTTATGT+GGG | + | chr1_3:59676066-59676085 | Msa0129630:intron | 30.0% |
| ! | ATTTTCAGCATCAGCTTTTT+CGG | + | chr1_3:59676243-59676262 | Msa0129630:CDS | 30.0% |
| AATATCGGTGAATTTCAACA+AGG | - | chr1_3:59676269-59676288 | None:intergenic | 30.0% | |
| ATTCACCGATATTAGTAACA+AGG | + | chr1_3:59676276-59676295 | Msa0129630:CDS | 30.0% | |
| CAGGAAGAAAAATATTACCT+TGG | - | chr1_3:59676371-59676390 | None:intergenic | 30.0% | |
| AATTGTCAAGTTTCATACAC+AGG | - | chr1_3:59676390-59676409 | None:intergenic | 30.0% | |
| TGTGTATGAAACTTGACAAT+TGG | + | chr1_3:59676389-59676408 | Msa0129630:intron | 30.0% | |
| TTAAATATCAAACCTGTCTG+TGG | + | chr1_3:59676558-59676577 | Msa0129630:intron | 30.0% | |
| TCAAAGGACTGATAAATCAT+TGG | - | chr1_3:59676638-59676657 | None:intergenic | 30.0% | |
| AATGATTTATCAGTCCTTTG+AGG | + | chr1_3:59676637-59676656 | Msa0129630:intron | 30.0% | |
| TAAACATTCAAGGACTACAT+TGG | - | chr1_3:59676700-59676719 | None:intergenic | 30.0% | |
| AATGGGAGAAATTTCATCAT+TGG | - | chr1_3:59676801-59676820 | None:intergenic | 30.0% | |
| ! | TGCGTTCTGAATTAATAAAC+TGG | + | chr1_3:59676965-59676984 | Msa0129630:CDS | 30.0% |
| ! | GCGTTCTGAATTAATAAACT+GGG | + | chr1_3:59676966-59676985 | Msa0129630:CDS | 30.0% |
| TTCTGAATTAATAAACTGGG+AGG | + | chr1_3:59676969-59676988 | Msa0129630:CDS | 30.0% | |
| !! | ATTTGGTTATGTTGATAGCA+TGG | - | chr1_3:59677041-59677060 | None:intergenic | 30.0% |
| ! | CAGCTTTTCTATTGTGTATT+TGG | - | chr1_3:59677058-59677077 | None:intergenic | 30.0% |
| ATAGAAAAGCTGTCTCAAAT+TGG | + | chr1_3:59677066-59677085 | Msa0129630:CDS | 30.0% | |
| TCAATATTCTTAGTATCTCC+TGG | + | chr1_3:59677121-59677140 | Msa0129630:CDS | 30.0% | |
| !! | GTTGTTTCTTTGCTTCAAAT+TGG | + | chr1_3:59677150-59677169 | Msa0129630:CDS | 30.0% |
| TTTCTTTGCTTCAAATTGGT+GGG | + | chr1_3:59677154-59677173 | Msa0129630:CDS | 30.0% | |
| TTTCTGTAACTGAAGCTAAA+AGG | + | chr1_3:59677289-59677308 | Msa0129630:CDS | 30.0% | |
| TTGATCAGGTAAAATTTCAC+TGG | - | chr1_3:59677324-59677343 | None:intergenic | 30.0% | |
| GTTAATGAAGATTCTCATTC+TGG | + | chr1_3:59677585-59677604 | Msa0129630:CDS | 30.0% | |
| CAAGTATTAGTACTCTTGAT+CGG | - | chr1_3:59677689-59677708 | None:intergenic | 30.0% | |
| CAAGCTTGAGAGAATATTTA+AGG | - | chr1_3:59677737-59677756 | None:intergenic | 30.0% | |
| !!! | TCAGAAGCTTAATTGGTTTT+TGG | + | chr1_3:59677782-59677801 | Msa0129630:CDS | 30.0% |
| !!! | GTTTTTGGATGTTTTAGTTG+AGG | + | chr1_3:59677797-59677816 | Msa0129630:CDS | 30.0% |
| AAAGAAGTTCTCTAGTAAGA+AGG | - | chr1_3:59677985-59678004 | None:intergenic | 30.0% | |
| ATGTTCATTACTTAAGCTGT+TGG | + | chr1_3:59678103-59678122 | Msa0129630:CDS | 30.0% | |
| TGTTCATTACTTAAGCTGTT+GGG | + | chr1_3:59678104-59678123 | Msa0129630:CDS | 30.0% | |
| AATTTCCTGAAAGAAGAATG+AGG | - | chr1_3:59678152-59678171 | None:intergenic | 30.0% | |
| !! | TTATGTCAATTGTTGGTGAT+CGG | + | chr1_3:59678231-59678250 | Msa0129630:CDS | 30.0% |
| ! | CTTGTCACAAATTTTGTGTT+TGG | + | chr1_3:59678262-59678281 | Msa0129630:CDS | 30.0% |
| CTTTAATGAAGCTTCATTGA+CGG | + | chr1_3:59678385-59678404 | Msa0129630:CDS | 30.0% | |
| TATCAAAGACTCCTAAATCT+TGG | + | chr1_3:59678648-59678667 | Msa0129630:intron | 30.0% | |
| ! | GATTTTTGCTTCCAAGATTT+AGG | - | chr1_3:59678662-59678681 | None:intergenic | 30.0% |
| TGGAATCAGAATGATAATTC+TGG | - | chr1_3:59678777-59678796 | None:intergenic | 30.0% | |
| AAATAAAGGACCATTCTCTT+CGG | + | chr1_3:59678914-59678933 | Msa0129630:CDS | 30.0% | |
| TCTAGTGATCATTTCATATC+TGG | + | chr1_3:59678951-59678970 | Msa0129630:CDS | 30.0% | |
| CAAATCGAATGATATTGAAC+AGG | + | chr1_3:59678984-59679003 | Msa0129630:CDS | 30.0% | |
| ! | GAATTTTCAGAAAGTGATGA+TGG | + | chr1_3:59679108-59679127 | Msa0129630:CDS | 30.0% |
| CATTTAGCATTAACTGCATT+TGG | + | chr1_3:59679201-59679220 | Msa0129630:CDS | 30.0% | |
| CAAGAACCAATTAAATAGCA+TGG | + | chr1_3:59679506-59679525 | Msa0129630:CDS | 30.0% | |
| CGAAAAATTGAAGCGAGAAA+TGG | - | chr1_3:59672509-59672528 | None:intergenic | 35.0% | |
| ! | TTTGCTTTCATTTTCGTTGC+AGG | + | chr1_3:59672594-59672613 | Msa0129630:intron | 35.0% |
| GTTCAATTATTCACCGATCT+AGG | + | chr1_3:59672631-59672650 | Msa0129630:CDS | 35.0% | |
| TACTACAAGGCAATTCATGA+CGG | - | chr1_3:59672698-59672717 | None:intergenic | 35.0% | |
| AGTGAAGAAAGGATACTACA+AGG | - | chr1_3:59672711-59672730 | None:intergenic | 35.0% | |
| GAAGAAGATGAAGTGAAGAA+AGG | - | chr1_3:59672722-59672741 | None:intergenic | 35.0% | |
| ! | AGTCAAATGTAAGTTTTCGG+CGG | + | chr1_3:59673221-59673240 | Msa0129630:intron | 35.0% |
| !! | AGCACAAATTTGTTAGCTGT+CGG | + | chr1_3:59673663-59673682 | Msa0129630:intron | 35.0% |
| !! | CTTACTTACTTCGGATTAGT+AGG | - | chr1_3:59673702-59673721 | None:intergenic | 35.0% |
| CTACTAATCCGAAGTAAGTA+AGG | + | chr1_3:59673700-59673719 | Msa0129630:intron | 35.0% | |
| ! | ACTATTGATGGTTGTCATCA+GGG | + | chr1_3:59673728-59673747 | Msa0129630:intron | 35.0% |
| ACATGTGAAAGTTTCCCAAT+AGG | - | chr1_3:59674126-59674145 | None:intergenic | 35.0% | |
| TTGGGAAACTTTCACATGTT+TGG | + | chr1_3:59674127-59674146 | Msa0129630:CDS | 35.0% | |
| ACTTCTGTTTAGCATGCATT+GGG | - | chr1_3:59674159-59674178 | None:intergenic | 35.0% | |
| TACTTCTGTTTAGCATGCAT+TGG | - | chr1_3:59674160-59674179 | None:intergenic | 35.0% | |
| !! | GCTAAACAGAAGTATTCTAC+AGG | + | chr1_3:59674166-59674185 | Msa0129630:CDS | 35.0% |
| AATTAGGCTAGTATATGGTC+TGG | + | chr1_3:59674349-59674368 | Msa0129630:intron | 35.0% | |
| GTGTGAATAAGAACTGTTCA+AGG | - | chr1_3:59674491-59674510 | None:intergenic | 35.0% | |
| ! | CACACACAAAAGCTTTTACT+TGG | + | chr1_3:59674506-59674525 | Msa0129630:intron | 35.0% |
| CTAAAAGACACCTTCATGAA+AGG | - | chr1_3:59674586-59674605 | None:intergenic | 35.0% | |
| TTGCTAAAAGACACCTTCAA+AGG | + | chr1_3:59674650-59674669 | Msa0129630:intron | 35.0% | |
| TGCTAAAAGACACCTTCAAA+GGG | + | chr1_3:59674651-59674670 | Msa0129630:intron | 35.0% | |
| CATTTACATTTGTCCAGCAA+AGG | - | chr1_3:59674860-59674879 | None:intergenic | 35.0% | |
| ! | AATTTAAAATGGGAGGCAAC+AGG | - | chr1_3:59675069-59675088 | None:intergenic | 35.0% |
| CGCTAATACTTATGAGTCAT+TGG | - | chr1_3:59675127-59675146 | None:intergenic | 35.0% | |
| ! | GCTTCAGCTTCAAATTTTTC+TGG | + | chr1_3:59675461-59675480 | Msa0129630:intron | 35.0% |
| AGACAACTCAGCAAATCAAT+AGG | - | chr1_3:59675623-59675642 | None:intergenic | 35.0% | |
| TTCGAAACATGAGTAATGCT+CGG | - | chr1_3:59675647-59675666 | None:intergenic | 35.0% | |
| GAAAGACAACTCAAGAATGT+TGG | - | chr1_3:59675675-59675694 | None:intergenic | 35.0% | |
| AATATAGGCTCCACAAAACA+TGG | - | chr1_3:59675701-59675720 | None:intergenic | 35.0% | |
| ! | ACAACTTTTCTTATGTGGGA+TGG | + | chr1_3:59676070-59676089 | Msa0129630:intron | 35.0% |
| !! | ATGTGGGATGGTTTGTTAAA+TGG | + | chr1_3:59676082-59676101 | Msa0129630:intron | 35.0% |
| TTGCAAAACTCTCAAATCAG+TGG | - | chr1_3:59676111-59676130 | None:intergenic | 35.0% | |
| !! | CTGATTTGAGAGTTTTGCAA+AGG | + | chr1_3:59676111-59676130 | Msa0129630:intron | 35.0% |
| ! | TTATGTTCTGCAGCTTCTTT+TGG | + | chr1_3:59676210-59676229 | Msa0129630:intron | 35.0% |
| AAGCTGATGCTGAAAATCTT+AGG | - | chr1_3:59676240-59676259 | None:intergenic | 35.0% | |
| ! | AGATTCTATATCTGAAGCCA+AGG | + | chr1_3:59676351-59676370 | Msa0129630:CDS | 35.0% |
| GTATGAAACTTGACAATTGG+AGG | + | chr1_3:59676392-59676411 | Msa0129630:intron | 35.0% | |
| GTCGTACACTTCAAATAATG+TGG | - | chr1_3:59676526-59676545 | None:intergenic | 35.0% | |
| CACAAGTCTCAAAATATCAG+CGG | - | chr1_3:59676665-59676684 | None:intergenic | 35.0% | |
| GTTCGATGATAGTTAATGCT+AGG | + | chr1_3:59676753-59676772 | Msa0129630:intron | 35.0% | |
| TGTTGTTGTAAAGCTATGCA+AGG | + | chr1_3:59676942-59676961 | Msa0129630:CDS | 35.0% | |
| ATAGCATGGACAACATGAAT+AGG | - | chr1_3:59677027-59677046 | None:intergenic | 35.0% | |
| ATTCTTAGTATCTCCTGGAA+AGG | + | chr1_3:59677126-59677145 | Msa0129630:CDS | 35.0% | |
| GTTTCTTTGCTTCAAATTGG+TGG | + | chr1_3:59677153-59677172 | Msa0129630:CDS | 35.0% | |
| TTCTTTGCTTCAAATTGGTG+GGG | + | chr1_3:59677155-59677174 | Msa0129630:CDS | 35.0% | |
| AAGTTACAAGCAGCTAATGT+TGG | - | chr1_3:59677621-59677640 | None:intergenic | 35.0% | |
| AGCTGCTTGTAACTTTACAT+TGG | + | chr1_3:59677626-59677645 | Msa0129630:CDS | 35.0% | |
| !! | CGATCAAGAGTACTAATACT+TGG | + | chr1_3:59677687-59677706 | Msa0129630:CDS | 35.0% |
| ATATTCTCTCAAGCTTGATG+AGG | + | chr1_3:59677740-59677759 | Msa0129630:CDS | 35.0% | |
| CGATTACTCAGAAGCTTAAT+TGG | + | chr1_3:59677775-59677794 | Msa0129630:CDS | 35.0% | |
| TTGCAACTTCCATCATTATC+TGG | + | chr1_3:59677846-59677865 | Msa0129630:CDS | 35.0% | |
| TGAAGAGATCACAATCATGA+AGG | - | chr1_3:59677937-59677956 | None:intergenic | 35.0% | |
| GCAATATGCTGAAACACAAA+TGG | + | chr1_3:59678058-59678077 | Msa0129630:CDS | 35.0% | |
| TACCTGTTGTGAAAAATCAG+TGG | + | chr1_3:59678196-59678215 | Msa0129630:CDS | 35.0% | |
| !!! | AACCACTGATTTTTCACAAC+AGG | - | chr1_3:59678201-59678220 | None:intergenic | 35.0% |
| TGAAAAATCAGTGGTTGAAG+AGG | + | chr1_3:59678205-59678224 | Msa0129630:CDS | 35.0% | |
| ! | GAGGTGTTTATGTCAATTGT+TGG | + | chr1_3:59678224-59678243 | Msa0129630:CDS | 35.0% |
| GAAGCAGAGAGAATAAAAAC+TGG | - | chr1_3:59678437-59678456 | None:intergenic | 35.0% | |
| GTGAAGGGATAAAAGAAATC+AGG | - | chr1_3:59678750-59678769 | None:intergenic | 35.0% | |
| !! | GATAATTCTGGTTCAGTGAA+GGG | - | chr1_3:59678765-59678784 | None:intergenic | 35.0% |
| !! | TGATAATTCTGGTTCAGTGA+AGG | - | chr1_3:59678766-59678785 | None:intergenic | 35.0% |
| AAATGGGAACACTATTCGTA+AGG | - | chr1_3:59678801-59678820 | None:intergenic | 35.0% | |
| CTTTCCTTGCTGCATAAAAT+GGG | - | chr1_3:59678817-59678836 | None:intergenic | 35.0% | |
| TCTTTCCTTGCTGCATAAAA+TGG | - | chr1_3:59678818-59678837 | None:intergenic | 35.0% | |
| TTGCATTTGTACAAAAGGAC+TGG | - | chr1_3:59679048-59679067 | None:intergenic | 35.0% | |
| ! | GTGGTTTGCATTTGTACAAA+AGG | - | chr1_3:59679053-59679072 | None:intergenic | 35.0% |
| GTACAAATGCAAACCACATT+TGG | + | chr1_3:59679056-59679075 | Msa0129630:CDS | 35.0% | |
| !! | CAGCATTGACTGAAATGTTA+TGG | - | chr1_3:59679449-59679468 | None:intergenic | 35.0% |
| ACATTTCAGTCAATGCTGAA+AGG | + | chr1_3:59679451-59679470 | Msa0129630:CDS | 35.0% | |
| ! | CGACTTCCATGCTATTTAAT+TGG | - | chr1_3:59679515-59679534 | None:intergenic | 35.0% |
| AAAAAAAGGAAACTTCCAGC+AGG | + | chr1_3:59679555-59679574 | Msa0129630:CDS | 35.0% | |
| GGTTTGAAGATTATTGGTGA+CGG | + | chr1_3:59679609-59679628 | Msa0129630:CDS | 35.0% | |
| ATACTTGACATGCAGTTCAT+TGG | - | chr1_3:59679667-59679686 | None:intergenic | 35.0% | |
| AATTACTCACTTCGAGGAAT+TGG | + | chr1_3:59679716-59679735 | Msa0129630:CDS | 35.0% | |
| ! | ATTCATGACGGAAGCATGAT+CGG | - | chr1_3:59672686-59672705 | None:intergenic | 40.0% |
| AAGTATGAAGCCTTGACATG+TGG | - | chr1_3:59673001-59673020 | None:intergenic | 40.0% | |
| TACACGTGCATGCACAAATT+CGG | - | chr1_3:59673455-59673474 | None:intergenic | 40.0% | |
| !! | CTTACTTCGGATTAGTAGGA+AGG | - | chr1_3:59673698-59673717 | None:intergenic | 40.0% |
| AGTGTCAGCCTTACTTACTT+CGG | - | chr1_3:59673711-59673730 | None:intergenic | 40.0% | |
| AGTAAGGCTGACACTATTGA+TGG | + | chr1_3:59673716-59673735 | Msa0129630:intron | 40.0% | |
| ! | CACTATTGATGGTTGTCATC+AGG | + | chr1_3:59673727-59673746 | Msa0129630:intron | 40.0% |
| TTTGCAGTAAACAGCTAGGT+AGG | - | chr1_3:59674217-59674236 | None:intergenic | 40.0% | |
| AGAGTTTGCAGTAAACAGCT+AGG | - | chr1_3:59674221-59674240 | None:intergenic | 40.0% | |
| TTACTGCAAACTCTCACTCT+TGG | + | chr1_3:59674227-59674246 | Msa0129630:CDS | 40.0% | |
| AGATTCTTCTGTCGACAACA+GGG | - | chr1_3:59674392-59674411 | None:intergenic | 40.0% | |
| CTAGAAGACACCTTTCATGA+AGG | + | chr1_3:59674573-59674592 | Msa0129630:intron | 40.0% | |
| AAGTGGATAATCACACCTTG+TGG | + | chr1_3:59674621-59674640 | Msa0129630:intron | 40.0% | |
| ! | TTTTAGCAATCCACACCACA+AGG | - | chr1_3:59674639-59674658 | None:intergenic | 40.0% |
| TCAGTACTGCAATATGCTCA+AGG | + | chr1_3:59674982-59675001 | Msa0129630:intron | 40.0% | |
| GTTAGCGTTTAAGTGAGTGA+AGG | - | chr1_3:59675248-59675267 | None:intergenic | 40.0% | |
| GCTGTGTATGATTTCTTGCT+AGG | + | chr1_3:59675501-59675520 | Msa0129630:intron | 40.0% | |
| CAGACTGAGATGATCATCAA+TGG | - | chr1_3:59675533-59675552 | None:intergenic | 40.0% | |
| TGATGATCATCTCAGTCTGT+CGG | + | chr1_3:59675534-59675553 | Msa0129630:CDS | 40.0% | |
| AATGTTGCACAGCATAACCA+AGG | - | chr1_3:59675571-59675590 | None:intergenic | 40.0% | |
| !! | GTCTTTCTAGCCATGTTTTG+TGG | + | chr1_3:59675688-59675707 | Msa0129630:intron | 40.0% |
| GCTTAAAGCTTCAGCTTGAA+CGG | + | chr1_3:59675751-59675770 | Msa0129630:intron | 40.0% | |
| !! | TGGGATGGTTTGTTAAATGG+TGG | + | chr1_3:59676085-59676104 | Msa0129630:intron | 40.0% |
| ! | GAGTTTTGCAAAGGTCATTC+AGG | + | chr1_3:59676120-59676139 | Msa0129630:intron | 40.0% |
| AAATATCAGCGGTACCTCAA+AGG | - | chr1_3:59676654-59676673 | None:intergenic | 40.0% | |
| !!! | CGCTGATATTTTGAGACTTG+TGG | + | chr1_3:59676663-59676682 | Msa0129630:intron | 40.0% |
| !!! | TTTTGAGACTTGTGGTCTTC+CGG | + | chr1_3:59676671-59676690 | Msa0129630:intron | 40.0% |
| ! | TTTGTATGTGTCGCTAAGCA+TGG | + | chr1_3:59676845-59676864 | Msa0129630:intron | 40.0% |
| CTTGTGATGAAAAACAGTCG+AGG | + | chr1_3:59676992-59677011 | Msa0129630:CDS | 40.0% | |
| CAAAGAAACAACACCTTTCC+AGG | - | chr1_3:59677142-59677161 | None:intergenic | 40.0% | |
| TCTTTGCTTCAAATTGGTGG+GGG | + | chr1_3:59677156-59677175 | Msa0129630:CDS | 40.0% | |
| AAATGCATCAGCAGTGATAG+CGG | + | chr1_3:59677464-59677483 | Msa0129630:CDS | 40.0% | |
| CAAAGACAACACCAAATCCA+AGG | - | chr1_3:59677508-59677527 | None:intergenic | 40.0% | |
| AAAACTGGAACAGAAGCTTG+AGG | + | chr1_3:59677545-59677564 | Msa0129630:CDS | 40.0% | |
| CAGCTAATGTTGGACAATCA+AGG | - | chr1_3:59677611-59677630 | None:intergenic | 40.0% | |
| TTTCCAGAGCCAGATAATGA+TGG | - | chr1_3:59677858-59677877 | None:intergenic | 40.0% | |
| TGCAAGAGGAGAGTAAACAT+AGG | - | chr1_3:59677903-59677922 | None:intergenic | 40.0% | |
| !!! | AGGTTTTGAATGCTTGCAAG+AGG | - | chr1_3:59677917-59677936 | None:intergenic | 40.0% |
| TGATCTCTTCAAGTACAGCT+TGG | + | chr1_3:59677946-59677965 | Msa0129630:CDS | 40.0% | |
| TCATCCTCACTTCCTTTGTT+TGG | + | chr1_3:59678004-59678023 | Msa0129630:CDS | 40.0% | |
| ATCTCCAAACAAAGGAAGTG+AGG | - | chr1_3:59678011-59678030 | None:intergenic | 40.0% | |
| GCATCACAATCTCCAAACAA+AGG | - | chr1_3:59678019-59678038 | None:intergenic | 40.0% | |
| ATGAGGAAGGAAAACTGAGT+CGG | - | chr1_3:59678135-59678154 | None:intergenic | 40.0% | |
| TCCTTCCTCATTCTTCTTTC+AGG | + | chr1_3:59678144-59678163 | Msa0129630:CDS | 40.0% | |
| TCCTGAAAGAAGAATGAGGA+AGG | - | chr1_3:59678148-59678167 | None:intergenic | 40.0% | |
| !! | TGTTTGGCTCTGTTCATTGA+AGG | + | chr1_3:59678278-59678297 | Msa0129630:CDS | 40.0% |
| !! | GTTTGGCTCTGTTCATTGAA+GGG | + | chr1_3:59678279-59678298 | Msa0129630:CDS | 40.0% |
| AACTGGAATGCCAAACAAAC+CGG | - | chr1_3:59678420-59678439 | None:intergenic | 40.0% | |
| ! | TGTTCCCATTTTATGCAGCA+AGG | + | chr1_3:59678810-59678829 | Msa0129630:intron | 40.0% |
| ACTACCTGAGATTGATGCAA+GGG | + | chr1_3:59678837-59678856 | Msa0129630:CDS | 40.0% | |
| ! | TGCAAGGGCCATAAAGTTTT+TGG | + | chr1_3:59678852-59678871 | Msa0129630:CDS | 40.0% |
| CATTTGTACAAAAGGACTGG+AGG | - | chr1_3:59679045-59679064 | None:intergenic | 40.0% | |
| TTCACTTGATCTTGACAGAG+CGG | + | chr1_3:59679163-59679182 | Msa0129630:CDS | 40.0% | |
| !! | TCATATGAAAGTGCTGCATC+CGG | - | chr1_3:59679276-59679295 | None:intergenic | 40.0% |
| TTCAGGAACAGAGACAACTA+AGG | + | chr1_3:59679302-59679321 | Msa0129630:CDS | 40.0% | |
| GGAGTGGAATTGCTGAAAAA+CGG | + | chr1_3:59679588-59679607 | Msa0129630:CDS | 40.0% | |
| AGATGCAATTACTCACTTCG+AGG | + | chr1_3:59679710-59679729 | Msa0129630:CDS | 40.0% | |
| ATTTAACGGCGGCGAGTATA+CGG | - | chr1_3:59672467-59672486 | None:intergenic | 45.0% | |
| ! | ATAATCGCATGTGTCGGTGT+CGG | - | chr1_3:59672941-59672960 | None:intergenic | 45.0% |
| TTACGGATGTCCACATGTCA+AGG | + | chr1_3:59672988-59673007 | Msa0129630:intron | 45.0% | |
| GTGCATGCACAAATTCGGAA+AGG | - | chr1_3:59673450-59673469 | None:intergenic | 45.0% | |
| GAATTTGTGCATGCACGTGT+AGG | + | chr1_3:59673454-59673473 | Msa0129630:intron | 45.0% | |
| TGATGCACACTCATCCAAGA+TGG | + | chr1_3:59673481-59673500 | Msa0129630:CDS | 45.0% | |
| CCAAATTCCACTACGCAAGA+CGG | - | chr1_3:59673951-59673970 | None:intergenic | 45.0% | |
| ATAGGTCGAGCTTGCAGTTA+AGG | - | chr1_3:59674108-59674127 | None:intergenic | 45.0% | |
| TAACTGCAAGCTCGACCTAT+TGG | + | chr1_3:59674108-59674127 | Msa0129630:CDS | 45.0% | |
| AACTGCAAGCTCGACCTATT+GGG | + | chr1_3:59674109-59674128 | Msa0129630:CDS | 45.0% | |
| AACTCTCACTCTTGGAGTCA+AGG | + | chr1_3:59674235-59674254 | Msa0129630:CDS | 45.0% | |
| GAGATTCTTCTGTCGACAAC+AGG | - | chr1_3:59674393-59674412 | None:intergenic | 45.0% | |
| GTTGTCGACAGAAGAATCTC+AGG | + | chr1_3:59674393-59674412 | Msa0129630:CDS | 45.0% | |
| ! | ACACAGCTCTGCATTTTACC+AGG | + | chr1_3:59674423-59674442 | Msa0129630:CDS | 45.0% |
| ! | AGCTCTGCATTTTACCAGGT+AGG | + | chr1_3:59674427-59674446 | Msa0129630:intron | 45.0% |
| GATAATCACACCTTGTGGTG+TGG | + | chr1_3:59674626-59674645 | Msa0129630:intron | 45.0% | |
| TGCTAGAAGACACCCTTTGA+AGG | - | chr1_3:59674666-59674685 | None:intergenic | 45.0% | |
| AGCGTGCAAACTCAGAGAAA+AGG | + | chr1_3:59675143-59675162 | Msa0129630:intron | 45.0% | |
| GCGTGCAAACTCAGAGAAAA+GGG | + | chr1_3:59675144-59675163 | Msa0129630:intron | 45.0% | |
| GCGTTTAAGTGAGTGAAGGT+TGG | - | chr1_3:59675244-59675263 | None:intergenic | 45.0% | |
| TTGCACAGCATAACCAAGGA+AGG | - | chr1_3:59675567-59675586 | None:intergenic | 45.0% | |
| TCAGGAATCTGCGTGTTTGT+TGG | + | chr1_3:59676138-59676157 | Msa0129630:intron | 45.0% | |
| CAGGAATCTGCGTGTTTGTT+GGG | + | chr1_3:59676139-59676158 | Msa0129630:intron | 45.0% | |
| TCAGTCATGTATCCACAGAC+AGG | - | chr1_3:59676573-59676592 | None:intergenic | 45.0% | |
| TCTGTGGATACATGACTGAG+TGG | + | chr1_3:59676574-59676593 | Msa0129630:intron | 45.0% | |
| ! | TTTGAGACTTGTGGTCTTCC+GGG | + | chr1_3:59676672-59676691 | Msa0129630:intron | 45.0% |
| TCAAGGACTACATTGGAACC+CGG | - | chr1_3:59676693-59676712 | None:intergenic | 45.0% | |
| GATATTAAAGGCCGCACACA+CGG | + | chr1_3:59676912-59676931 | Msa0129630:CDS | 45.0% | |
| AACATCAATGACCGTGTGTG+CGG | - | chr1_3:59676926-59676945 | None:intergenic | 45.0% | |
| GGTGTTCTTGCTTCGAATGA+TGG | + | chr1_3:59677087-59677106 | Msa0129630:CDS | 45.0% | |
| GTTCTTGCTTCGAATGATGG+TGG | + | chr1_3:59677090-59677109 | Msa0129630:CDS | 45.0% | |
| CTTTGCTTCAAATTGGTGGG+GGG | + | chr1_3:59677157-59677176 | Msa0129630:CDS | 45.0% | |
| AGCAGCACATTTCAAAGGCT+CGG | - | chr1_3:59677238-59677257 | None:intergenic | 45.0% | |
| ACCTCAGCAGCACATTTCAA+AGG | - | chr1_3:59677243-59677262 | None:intergenic | 45.0% | |
| ! | TGAAATGTGCTGCTGAGGTT+TGG | + | chr1_3:59677244-59677263 | Msa0129630:CDS | 45.0% |
| TACACTGTGTAGGTCTGATG+AGG | - | chr1_3:59677372-59677391 | None:intergenic | 45.0% | |
| ATCAGACCTACACAGTGTAC+AGG | + | chr1_3:59677373-59677392 | Msa0129630:CDS | 45.0% | |
| TCAGACCTACACAGTGTACA+GGG | + | chr1_3:59677374-59677393 | Msa0129630:CDS | 45.0% | |
| GCTATTGGAGGAAACAACCT+TGG | + | chr1_3:59677488-59677507 | Msa0129630:CDS | 45.0% | |
| GGAGGAAACAACCTTGGATT+TGG | + | chr1_3:59677494-59677513 | Msa0129630:CDS | 45.0% | |
| !! | AGAAGCTTGAGGTAGTGGAA+TGG | + | chr1_3:59677556-59677575 | Msa0129630:CDS | 45.0% |
| ! | CTTCCATCATTATCTGGCTC+TGG | + | chr1_3:59677852-59677871 | Msa0129630:CDS | 45.0% |
| ! | CTCTGGAAAAACAGCTGAAC+TGG | + | chr1_3:59677869-59677888 | Msa0129630:CDS | 45.0% |
| GAAAAACAGCTGAACTGGTG+TGG | + | chr1_3:59677874-59677893 | Msa0129630:CDS | 45.0% | |
| TCTCTTCAAGTACAGCTTGG+AGG | + | chr1_3:59677949-59677968 | Msa0129630:CDS | 45.0% | |
| CTCTTCAAGTACAGCTTGGA+GGG | + | chr1_3:59677950-59677969 | Msa0129630:CDS | 45.0% | |
| TGGAGATTGTGATGCAATGC+TGG | + | chr1_3:59678024-59678043 | Msa0129630:CDS | 45.0% | |
| GGGAACACTATTCGTAAGGT+TGG | - | chr1_3:59678797-59678816 | None:intergenic | 45.0% | |
| GACTACCTGAGATTGATGCA+AGG | + | chr1_3:59678836-59678855 | Msa0129630:CDS | 45.0% | |
| ! | GACCATTCTCTTCGGCTTTT+TGG | + | chr1_3:59678922-59678941 | Msa0129630:CDS | 45.0% |
| CACCAAAAAGCCGAAGAGAA+TGG | - | chr1_3:59678927-59678946 | None:intergenic | 45.0% | |
| ATGCAAAAAGTCGTGCTGCA+TGG | + | chr1_3:59679133-59679152 | Msa0129630:CDS | 45.0% | |
| TGCAAAAAGTCGTGCTGCAT+GGG | + | chr1_3:59679134-59679153 | Msa0129630:CDS | 45.0% | |
| !! | ACACAACTTGCTGTCAGCTA+TGG | + | chr1_3:59679238-59679257 | Msa0129630:CDS | 45.0% |
| GCTATGGAGATTTCTTCCAC+CGG | + | chr1_3:59679254-59679273 | Msa0129630:CDS | 45.0% | |
| GTCAATGCTGAAAGGAGAGA+TGG | + | chr1_3:59679459-59679478 | Msa0129630:CDS | 45.0% | |
| CTTCCAGCAGGAATTAGCAA+AGG | + | chr1_3:59679567-59679586 | Msa0129630:CDS | 45.0% | |
| ACTCCTTTGCTAATTCCTGC+TGG | - | chr1_3:59679573-59679592 | None:intergenic | 45.0% | |
| AGCAGGAATTAGCAAAGGAG+TGG | + | chr1_3:59679572-59679591 | Msa0129630:CDS | 45.0% | |
| ! | CCTCGCAAATTGCTCTGAAT+AGG | - | chr1_3:59679768-59679787 | None:intergenic | 45.0% |
| CCTATTCAGAGCAATTTGCG+AGG | + | chr1_3:59679765-59679784 | Msa0129630:CDS | 45.0% | |
| !! | TACAAAAAATAAAAATAATA+GGG | - | chr1_3:59674945-59674964 | None:intergenic | 5.0% |
| !! | ATACAAAAAATAAAAATAAT+AGG | - | chr1_3:59674946-59674965 | None:intergenic | 5.0% |
| GGCGAGTATACGGTGGATAT+CGG | - | chr1_3:59672457-59672476 | None:intergenic | 50.0% | |
| GAAATGGAAGTAGCTCGCCT+CGG | - | chr1_3:59672493-59672512 | None:intergenic | 50.0% | |
| CTCGCTGCTTAGTCAACTTG+TGG | + | chr1_3:59672880-59672899 | Msa0129630:intron | 50.0% | |
| ! | TTCTGAGCAAAAGCGTGTCC+CGG | + | chr1_3:59672912-59672931 | Msa0129630:intron | 50.0% |
| ATCTCACAGCTCGACCATCT+TGG | - | chr1_3:59673498-59673517 | None:intergenic | 50.0% | |
| ATCAGGGCTCAGGCTTAGAA+TGG | + | chr1_3:59673744-59673763 | Msa0129630:intron | 50.0% | |
| AAACGGCTCTGTAGCACTCT+TGG | + | chr1_3:59673829-59673848 | Msa0129630:intron | 50.0% | |
| ! | CCGTCTTGCGTAGTGGAATT+TGG | + | chr1_3:59673948-59673967 | Msa0129630:intron | 50.0% |
| AACATTCCAGCCAGCTCACT+GGG | + | chr1_3:59675585-59675604 | Msa0129630:CDS | 50.0% | |
| TGATCATCAACCCAGTGAGC+TGG | - | chr1_3:59675598-59675617 | None:intergenic | 50.0% | |
| GTGGATACATGACTGAGTGG+AGG | + | chr1_3:59676577-59676596 | Msa0129630:intron | 50.0% | |
| !! | GCCTTTGAAATGTGCTGCTG+AGG | + | chr1_3:59677239-59677258 | Msa0129630:CDS | 50.0% |
| GATCTCCCTGTACACTGTGT+AGG | - | chr1_3:59677382-59677401 | None:intergenic | 50.0% | |
| !! | AGCAGTGATAGCGGAGCTAT+TGG | + | chr1_3:59677473-59677492 | Msa0129630:CDS | 50.0% |
| !! | AGTGATAGCGGAGCTATTGG+AGG | + | chr1_3:59677476-59677495 | Msa0129630:CDS | 50.0% |
| GGAACAGAAGCTTGAGGTAG+TGG | + | chr1_3:59677551-59677570 | Msa0129630:CDS | 50.0% | |
| AGGAAGGAAAACTGAGTCGG+AGG | - | chr1_3:59678132-59678151 | None:intergenic | 50.0% | |
| TGGAATGCCAAACAAACCGG+AGG | - | chr1_3:59678417-59678436 | None:intergenic | 50.0% | |
| ATGGCCCTTGCATCAATCTC+AGG | - | chr1_3:59678844-59678863 | None:intergenic | 50.0% | |
| GTGAGGAACTGAGCCAAATG+TGG | - | chr1_3:59679072-59679091 | None:intergenic | 50.0% | |
| ! | CATTTGGCTCAGTTCCTCAC+TGG | + | chr1_3:59679072-59679091 | Msa0129630:CDS | 50.0% |
| CCATGTGAACAAGTCCAGTG+AGG | - | chr1_3:59679089-59679108 | None:intergenic | 50.0% | |
| ! | CCTCACTGGACTTGTTCACA+TGG | + | chr1_3:59679086-59679105 | Msa0129630:CDS | 50.0% |
| !! | TATGAAAGTGCTGCATCCGG+TGG | - | chr1_3:59679273-59679292 | None:intergenic | 50.0% |
| AGCTCAAGCTGTTCAGGACT+TGG | - | chr1_3:59679390-59679409 | None:intergenic | 50.0% | |
| GAGAGATGGATGTGAGAGCA+TGG | + | chr1_3:59679473-59679492 | Msa0129630:CDS | 50.0% | |
| !! | TTGGTGACGGTCTTTCAGAG+TGG | + | chr1_3:59679622-59679641 | Msa0129630:CDS | 50.0% |
| ACTCACTTCGAGGAATTGGC+TGG | + | chr1_3:59679720-59679739 | Msa0129630:CDS | 50.0% | |
| CTCACTTCGAGGAATTGGCT+GGG | + | chr1_3:59679721-59679740 | Msa0129630:CDS | 50.0% | |
| TATACGGTGGATATCGGCGC+CGG | - | chr1_3:59672451-59672470 | None:intergenic | 55.0% | |
| GCTCGCCTCGGAGGATTTAA+CGG | - | chr1_3:59672481-59672500 | None:intergenic | 55.0% | |
| GATGGTTGTCATCAGGGCTC+AGG | + | chr1_3:59673734-59673753 | Msa0129630:intron | 55.0% | |
| GCAAGACGGCAACAGTGTCA+TGG | - | chr1_3:59673937-59673956 | None:intergenic | 55.0% | |
| ACTGTTGCCGTCTTGCGTAG+TGG | + | chr1_3:59673941-59673960 | Msa0129630:intron | 55.0% | |
| GGTCGAGCTTGCAGTTAAGG+TGG | - | chr1_3:59674105-59674124 | None:intergenic | 55.0% | |
| GCTGACGTGCATTACGACCA+TGG | - | chr1_3:59675443-59675462 | None:intergenic | 55.0% | |
| TGTCGGTGAGTCTCCTTCCT+TGG | + | chr1_3:59675551-59675570 | Msa0129630:CDS | 55.0% | |
| CAACATTCCAGCCAGCTCAC+TGG | + | chr1_3:59675584-59675603 | Msa0129630:CDS | 55.0% | |
| TCATTGACGGCATGCTCCTC+CGG | + | chr1_3:59678398-59678417 | Msa0129630:CDS | 55.0% | |
| ! | GCATGCTCCTCCGGTTTGTT+TGG | + | chr1_3:59678407-59678426 | Msa0129630:CDS | 55.0% |
| TGATCTTGACAGAGCGGCAC+TGG | + | chr1_3:59679169-59679188 | Msa0129630:CDS | 55.0% | |
| GATCTTGACAGAGCGGCACT+GGG | + | chr1_3:59679170-59679189 | Msa0129630:CDS | 55.0% | |
| CGTAGCAGCTCAAGCTGTTC+AGG | - | chr1_3:59679396-59679415 | None:intergenic | 55.0% | |
| CTTGAGCTGCTACGACGAGA+AGG | + | chr1_3:59679402-59679421 | Msa0129630:CDS | 55.0% | |
| TTCGAGGAATTGGCTGGGAG+TGG | + | chr1_3:59679726-59679745 | Msa0129630:CDS | 55.0% | |
| TAACGGCGGCGAGTATACGG+TGG | - | chr1_3:59672464-59672483 | None:intergenic | 60.0% | |
| CGCCTCGGAGGATTTAACGG+CGG | - | chr1_3:59672478-59672497 | None:intergenic | 60.0% | |
| ATGGAAGTAGCTCGCCTCGG+AGG | - | chr1_3:59672490-59672509 | None:intergenic | 60.0% | |
| !! | ATGTGTCGGTGTCGGACACC+GGG | - | chr1_3:59672933-59672952 | None:intergenic | 60.0% |
| !! | CATGTGTCGGTGTCGGACAC+CGG | - | chr1_3:59672934-59672953 | None:intergenic | 60.0% |
| CATCAACCCAGTGAGCTGGC+TGG | - | chr1_3:59675594-59675613 | None:intergenic | 60.0% | |
| CGCCGCCGTTAAATCCTCCG+AGG | + | chr1_3:59672473-59672492 | Msa0129630:CDS | 65.0% | |
| GGAATTGGCTGGGAGTGGCG+AGG | + | chr1_3:59679731-59679750 | Msa0129630:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59672432 | 59679886 | 59672432 | ID=Msa0129630;Name=Msa0129630 |
| chr1_3 | mRNA | 59672432 | 59679886 | 59672432 | ID=Msa0129630-mRNA-1;Parent=Msa0129630;Name=Msa0129630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.25|0.11|0.77|1|1|9|95|1096 |
| chr1_3 | exon | 59672432 | 59672494 | 59672432 | ID=Msa0129630-mRNA-1:exon:19428;Parent=Msa0129630-mRNA-1 |
| chr1_3 | exon | 59672616 | 59672744 | 59672616 | ID=Msa0129630-mRNA-1:exon:19429;Parent=Msa0129630-mRNA-1 |
| chr1_3 | exon | 59673476 | 59673510 | 59673476 | ID=Msa0129630-mRNA-1:exon:19430;Parent=Msa0129630-mRNA-1 |
| chr1_3 | exon | 59674073 | 59674256 | 59674073 | ID=Msa0129630-mRNA-1:exon:19431;Parent=Msa0129630-mRNA-1 |
| chr1_3 | exon | 59674355 | 59674444 | 59674355 | ID=Msa0129630-mRNA-1:exon:19432;Parent=Msa0129630-mRNA-1 |
| chr1_3 | exon | 59675523 | 59675606 | 59675523 | ID=Msa0129630-mRNA-1:exon:19433;Parent=Msa0129630-mRNA-1 |
| chr1_3 | exon | 59676223 | 59676372 | 59676223 | ID=Msa0129630-mRNA-1:exon:19434;Parent=Msa0129630-mRNA-1 |
| chr1_3 | exon | 59676889 | 59678480 | 59676889 | ID=Msa0129630-mRNA-1:exon:19435;Parent=Msa0129630-mRNA-1 |
| chr1_3 | exon | 59678828 | 59679886 | 59678828 | ID=Msa0129630-mRNA-1:exon:19436;Parent=Msa0129630-mRNA-1 |
| chr1_3 | CDS | 59672432 | 59672494 | 59672432 | ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1 |
| chr1_3 | CDS | 59672616 | 59672744 | 59672616 | ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1 |
| chr1_3 | CDS | 59673476 | 59673510 | 59673476 | ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1 |
| chr1_3 | CDS | 59674073 | 59674256 | 59674073 | ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1 |
| chr1_3 | CDS | 59674355 | 59674444 | 59674355 | ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1 |
| chr1_3 | CDS | 59675523 | 59675606 | 59675523 | ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1 |
| chr1_3 | CDS | 59676223 | 59676372 | 59676223 | ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1 |
| chr1_3 | CDS | 59676889 | 59678480 | 59676889 | ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1 |
| chr1_3 | CDS | 59678828 | 59679791 | 59678828 | ID=Msa0129630-mRNA-1:cds;Parent=Msa0129630-mRNA-1 |
| chr1_3 | three_prime_UTR | 59679792 | 59679886 | 59679792 | ID=Msa0129630-mRNA-1:three_prime_utr;Parent=Msa0129630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
