Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427870 | RHN81216.1 | 92.062 | 1096 | 25 | 2 | 1 | 1096 | 1 | 1034 | 0.0 | 2021 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427870 | A0A396JSC8 | 92.062 | 1096 | 25 | 2 | 1 | 1096 | 1 | 1034 | 0.0 | 2021 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037710 | Msa1427870 | 0.814292 | 1.659762e-51 | -8.615850e-47 |
| Msa1412420 | Msa1427870 | 0.990029 | 9.807091e-181 | -8.615850e-47 |
| Msa1427870 | Msa1429070 | 0.802045 | 6.758888e-49 | -8.615850e-47 |
| Msa0709440 | Msa1427870 | 0.801334 | 9.456435e-49 | -8.615850e-47 |
| Msa0129630 | Msa1427870 | 0.965188 | 2.784828e-124 | -8.615850e-47 |
| Msa1331300 | Msa1427870 | 0.821659 | 3.590009e-53 | -8.615850e-47 |
| Msa0414880 | Msa1427870 | 0.825385 | 4.825205e-54 | -8.615850e-47 |
| Msa0481890 | Msa1427870 | 0.801189 | 1.012704e-48 | -8.615850e-47 |
| Msa1074900 | Msa1427870 | 0.815663 | 8.236243e-52 | -8.615850e-47 |
| Msa1078830 | Msa1427870 | 0.823079 | 1.680062e-53 | -8.615850e-47 |
| Msa1169660 | Msa1427870 | 0.818083 | 2.358563e-52 | -8.615850e-47 |
| Msa1171290 | Msa1427870 | 0.804484 | 2.112779e-49 | -8.615850e-47 |
| Msa1207330 | Msa1427870 | 0.813188 | 2.904213e-51 | -8.615850e-47 |
| Msa0502510 | Msa1427870 | 0.819948 | 8.881931e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427870 | MtrunA17_Chr1g0196651 | 92.062 | 1096 | 25 | 2 | 1 | 1096 | 1 | 1034 | 0.0 | 2021 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427870 | AT1G04650.1 | 38.873 | 1083 | 560 | 10 | 12 | 1084 | 7 | 997 | 0.0 | 708 |
| Msa1427870 | AT1G04650.2 | 41.046 | 899 | 496 | 9 | 196 | 1084 | 21 | 895 | 0.0 | 654 |
Find 184 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCCTCATTCTTCTTTC+AGG | 0.081998 | tig0026227:-15177 | Msa1427870:CDS |
| CAAGCTTGAGAGAATATTTA+AGG | 0.158566 | tig0026227:+15587 | None:intergenic |
| TTCTCACTATCACTTCATTT+TGG | 0.164804 | tig0026227:-15909 | Msa1427870:CDS |
| CGACTTCCATGCTATTTAAT+TGG | 0.194433 | tig0026227:+13809 | None:intergenic |
| GTTAATGAAGATTCTCATTC+TGG | 0.243809 | tig0026227:-15736 | Msa1427870:CDS |
| TTATGTTCTGCAGCTTCTTT+TGG | 0.246930 | tig0026227:-17111 | Msa1427870:intron |
| TCTAGTGATCATTTCATATC+TGG | 0.247729 | tig0026227:-14370 | Msa1427870:CDS |
| CGATTACTCAGAAGCTTAAT+TGG | 0.262276 | tig0026227:-15546 | Msa1427870:CDS |
| TCATCCTCACTTCCTTTGTT+TGG | 0.264775 | tig0026227:-15317 | Msa1427870:CDS |
| CAGCATTGACTGAAATGTTA+TGG | 0.283833 | tig0026227:+13875 | None:intergenic |
| TTGCAACTTCCATCATTATC+TGG | 0.286370 | tig0026227:-15475 | Msa1427870:CDS |
| CAATTCCTTGTTACTAATAT+CGG | 0.290844 | tig0026227:+17040 | None:intergenic |
| TTGGGAAACTTTCACATGTT+TGG | 0.293444 | tig0026227:-19191 | Msa1427870:CDS |
| CTTTCATATGATATAATTTC+AGG | 0.293788 | tig0026227:-14036 | Msa1427870:CDS |
| CATTTAGCATTAACTGCATT+TGG | 0.306514 | tig0026227:-14120 | Msa1427870:CDS |
| AATATCTGATAAACTAAAAC+TGG | 0.307618 | tig0026227:-15791 | Msa1427870:CDS |
| AAGCAGAAAATTCAATCATT+TGG | 0.307925 | tig0026227:-16438 | Msa1427870:intron |
| CGTAGCAGCTCAAGCTGTTC+AGG | 0.310698 | tig0026227:+13928 | None:intergenic |
| TGCGTTCTGAATTAATAAAC+TGG | 0.317909 | tig0026227:-16356 | Msa1427870:CDS |
| GGAGGAAACAACCTTGGATT+TGG | 0.320498 | tig0026227:-15827 | Msa1427870:CDS |
| GTTGTTTCTTTGCTTCAAAT+TGG | 0.328294 | tig0026227:-16171 | Msa1427870:CDS |
| TTTCTGTAACTGAAGCTAAA+AGG | 0.334035 | tig0026227:-16032 | Msa1427870:CDS |
| AAGCTGATGCTGAAAATCTT+AGG | 0.334216 | tig0026227:+17084 | None:intergenic |
| TAACTGCAAGCTCGACCTAT+TGG | 0.334725 | tig0026227:-19210 | Msa1427870:CDS |
| ATTTGGATCAGAGATATTAA+AGG | 0.341131 | tig0026227:-16421 | Msa1427870:CDS |
| AATTACTCACTTCGAGGAAT+TGG | 0.343356 | tig0026227:-13605 | Msa1427870:CDS |
| GCATGCTCCTCCGGTTTGTT+TGG | 0.344036 | tig0026227:-14914 | Msa1427870:CDS |
| CAAAGAAACAACACCTTTCC+AGG | 0.352316 | tig0026227:+16182 | None:intergenic |
| GTACAAATGCAAACCACATT+TGG | 0.371106 | tig0026227:-14265 | Msa1427870:CDS |
| TTTCTTTGCTTCAAATTGGT+GGG | 0.374180 | tig0026227:-16167 | Msa1427870:CDS |
| ATAGAAAAGCTGTCTCAAAT+TGG | 0.376969 | tig0026227:-16255 | Msa1427870:CDS |
| GAGATTCTTCTGTCGACAAC+AGG | 0.378557 | tig0026227:+18928 | None:intergenic |
| TACTGTTGACAAAGAAATAA+AGG | 0.379756 | tig0026227:-14421 | Msa1427870:CDS |
| ATTTAACGGCGGCGAGTATA+CGG | 0.383964 | tig0026227:+20854 | None:intergenic |
| GTTCAATTATTCACCGATCT+AGG | 0.386018 | tig0026227:-20687 | Msa1427870:CDS |
| GTGGTTTGCATTTGTACAAA+AGG | 0.397409 | tig0026227:+14271 | None:intergenic |
| AACTGCAAGCTCGACCTATT+GGG | 0.397950 | tig0026227:-19209 | Msa1427870:CDS |
| AGCAGTGATAGCGGAGCTAT+TGG | 0.398983 | tig0026227:-15848 | Msa1427870:CDS |
| TTGTTAATTAGGCTAGTATA+TGG | 0.402043 | tig0026227:-18974 | Msa1427870:intron |
| TGAAATGTGCTGCTGAGGTT+TGG | 0.402761 | tig0026227:-16077 | Msa1427870:CDS |
| TGATCTTGACAGAGCGGCAC+TGG | 0.406282 | tig0026227:-14152 | Msa1427870:CDS |
| ATAGGTCGAGCTTGCAGTTA+AGG | 0.406436 | tig0026227:+19213 | None:intergenic |
| TCATTGACGGCATGCTCCTC+CGG | 0.409903 | tig0026227:-14923 | Msa1427870:CDS |
| TACTTCTGTTTAGCATGCAT+TGG | 0.409935 | tig0026227:+19161 | None:intergenic |
| AGCTCAAGCTGTTCAGGACT+TGG | 0.411704 | tig0026227:+13934 | None:intergenic |
| TGTTTGGCTCTGTTCATTGA+AGG | 0.412535 | tig0026227:-15043 | Msa1427870:CDS |
| ATACTTGACATGCAGTTCAT+TGG | 0.417288 | tig0026227:+13657 | None:intergenic |
| TCAATATTCTTAGTATCTCC+TGG | 0.423343 | tig0026227:-16200 | Msa1427870:CDS |
| CTTTAATGAAGCTTCATTGA+CGG | 0.432701 | tig0026227:-14936 | Msa1427870:CDS |
| ATAGCATGGACAACATGAAT+AGG | 0.438166 | tig0026227:+16297 | None:intergenic |
| TATTAGTAACAAGGAATTGA+TGG | 0.445950 | tig0026227:-17036 | Msa1427870:CDS |
| GGAACAGAAGCTTGAGGTAG+TGG | 0.446616 | tig0026227:-15770 | Msa1427870:CDS |
| TTCTTTGCTTCAAATTGGTG+GGG | 0.449517 | tig0026227:-16166 | Msa1427870:CDS |
| TGTCGGTGAGTCTCCTTCCT+TGG | 0.455419 | tig0026227:-17770 | Msa1427870:CDS |
| ACTTCTGTTTAGCATGCATT+GGG | 0.455549 | tig0026227:+19162 | None:intergenic |
| CCTCGCAAATTGCTCTGAAT+AGG | 0.459283 | tig0026227:+13556 | None:intergenic |
| ATGGCCCTTGCATCAATCTC+AGG | 0.459700 | tig0026227:+14480 | None:intergenic |
| ATGTTCATTACTTAAGCTGT+TGG | 0.460578 | tig0026227:-15218 | Msa1427870:CDS |
| ACATGTGAAAGTTTCCCAAT+AGG | 0.460912 | tig0026227:+19195 | None:intergenic |
| ACTCCTTTGCTAATTCCTGC+TGG | 0.462429 | tig0026227:+13751 | None:intergenic |
| GGTGTTCTTGCTTCGAATGA+TGG | 0.465585 | tig0026227:-16234 | Msa1427870:CDS |
| ACTCACTTCGAGGAATTGGC+TGG | 0.466064 | tig0026227:-13601 | Msa1427870:CDS |
| TGTTCATTACTTAAGCTGTT+GGG | 0.467901 | tig0026227:-15217 | Msa1427870:CDS |
| CTTCCATCATTATCTGGCTC+TGG | 0.468283 | tig0026227:-15469 | Msa1427870:CDS |
| GAGAGATGGATGTGAGAGCA+TGG | 0.468330 | tig0026227:-13848 | Msa1427870:CDS |
| GTTTCTTTGCTTCAAATTGG+TGG | 0.468414 | tig0026227:-16168 | Msa1427870:CDS |
| CAAGCTTAAATTTCCTAGAT+CGG | 0.468630 | tig0026227:+20674 | None:intergenic |
| CGATCAAGAGTACTAATACT+TGG | 0.468752 | tig0026227:-15634 | Msa1427870:CDS |
| TCTTTGCTTCAAATTGGTGG+GGG | 0.472659 | tig0026227:-16165 | Msa1427870:CDS |
| GCAATATGCTGAAACACAAA+TGG | 0.474449 | tig0026227:-15263 | Msa1427870:CDS |
| AACTGGAATGCCAAACAAAC+CGG | 0.477551 | tig0026227:+14904 | None:intergenic |
| GAAGAAGATGAAGTGAAGAA+AGG | 0.478004 | tig0026227:+20599 | None:intergenic |
| TGGAGATTGTGATGCAATGC+TGG | 0.478103 | tig0026227:-15297 | Msa1427870:CDS |
| GCTCGCCTCGGAGGATTTAA+CGG | 0.480743 | tig0026227:+20840 | None:intergenic |
| CAACATTCCAGCCAGCTCAC+TGG | 0.482695 | tig0026227:-17737 | Msa1427870:CDS |
| CAAATCGAATGATATTGAAC+AGG | 0.484736 | tig0026227:-14337 | Msa1427870:CDS |
| TTACTGCAAACTCTCACTCT+TGG | 0.489075 | tig0026227:-19091 | Msa1427870:CDS |
| TTGCATTTGTACAAAAGGAC+TGG | 0.493090 | tig0026227:+14276 | None:intergenic |
| ATCTCACAGCTCGACCATCT+TGG | 0.494070 | tig0026227:+19823 | None:intergenic |
| GGCGAGTATACGGTGGATAT+CGG | 0.496864 | tig0026227:+20864 | None:intergenic |
| ACTATAAAACAAACATCAAA+GGG | 0.498557 | tig0026227:+13526 | None:intergenic |
| AACATTCCAGCCAGCTCACT+GGG | 0.503043 | tig0026227:-17736 | Msa1427870:intron |
| TACTATAAAACAAACATCAA+AGG | 0.505082 | tig0026227:+13525 | None:intergenic |
| AAATAAAGGACCATTCTCTT+CGG | 0.505358 | tig0026227:-14407 | Msa1427870:CDS |
| CTCTTCAAGTACAGCTTGGA+GGG | 0.511034 | tig0026227:-15371 | Msa1427870:CDS |
| GAGGTGTTTATGTCAATTGT+TGG | 0.511061 | tig0026227:-15097 | Msa1427870:CDS |
| TTCGAGGAATTGGCTGGGAG+TGG | 0.511953 | tig0026227:-13595 | Msa1427870:CDS |
| ATCAGACCTACACAGTGTAC+AGG | 0.514130 | tig0026227:-15948 | Msa1427870:CDS |
| CAGCTAATGTTGGACAATCA+AGG | 0.514656 | tig0026227:+15713 | None:intergenic |
| CAGACTGAGATGATCATCAA+TGG | 0.516467 | tig0026227:+17791 | None:intergenic |
| CTTTGCTTCAAATTGGTGGG+GGG | 0.516713 | tig0026227:-16164 | Msa1427870:CDS |
| TGATCTCTTCAAGTACAGCT+TGG | 0.518395 | tig0026227:-15375 | Msa1427870:CDS |
| TTGATCAGGTAAAATTTCAC+TGG | 0.518498 | tig0026227:+16000 | None:intergenic |
| CATTTGGCTCAGTTCCTCAC+TGG | 0.520913 | tig0026227:-14249 | Msa1427870:CDS |
| AAAGAAGTTCTCTAGTAAGA+AGG | 0.520959 | tig0026227:+15339 | None:intergenic |
| TTTGCAGTAAACAGCTAGGT+AGG | 0.522639 | tig0026227:+19104 | None:intergenic |
| GTTGTCGACAGAAGAATCTC+AGG | 0.522837 | tig0026227:-18925 | Msa1427870:CDS |
| CATCAACCCAGTGAGCTGGC+TGG | 0.523998 | tig0026227:+17730 | None:intergenic |
| TTTCCAGAGCCAGATAATGA+TGG | 0.524410 | tig0026227:+15466 | None:intergenic |
| AGTGAATATAGCAAATATAG+TGG | 0.524490 | tig0026227:-16130 | Msa1427870:CDS |
| ATTCATGACGGAAGCATGAT+CGG | 0.524988 | tig0026227:+20635 | None:intergenic |
| GCCTTTGAAATGTGCTGCTG+AGG | 0.526380 | tig0026227:-16082 | Msa1427870:CDS |
| ACACAACTTGCTGTCAGCTA+TGG | 0.527197 | tig0026227:-14083 | Msa1427870:CDS |
| AACTCTCACTCTTGGAGTCA+AGG | 0.528872 | tig0026227:-19083 | Msa1427870:intron |
| GCTAAACAGAAGTATTCTAC+AGG | 0.531874 | tig0026227:-19152 | Msa1427870:CDS |
| TCATATGAAAGTGCTGCATC+CGG | 0.537804 | tig0026227:+14048 | None:intergenic |
| GTTTGGCTCTGTTCATTGAA+GGG | 0.538387 | tig0026227:-15042 | Msa1427870:CDS |
| TGATCATCAACCCAGTGAGC+TGG | 0.538682 | tig0026227:+17726 | None:intergenic |
| AGCTGCTTGTAACTTTACAT+TGG | 0.538952 | tig0026227:-15695 | Msa1427870:CDS |
| AATTAGGCTAGTATATGGTC+TGG | 0.540868 | tig0026227:-18969 | Msa1427870:intron |
| CAAGAACCAATTAAATAGCA+TGG | 0.544781 | tig0026227:-13815 | Msa1427870:CDS |
| ATTTGGTTATGTTGATAGCA+TGG | 0.545431 | tig0026227:+16283 | None:intergenic |
| TCTCTTCAAGTACAGCTTGG+AGG | 0.545970 | tig0026227:-15372 | Msa1427870:CDS |
| GCTATTGGAGGAAACAACCT+TGG | 0.546923 | tig0026227:-15833 | Msa1427870:CDS |
| GTCAATGCTGAAAGGAGAGA+TGG | 0.547419 | tig0026227:-13862 | Msa1427870:CDS |
| CAAGTATTAGTACTCTTGAT+CGG | 0.548577 | tig0026227:+15635 | None:intergenic |
| TGAAGAGATCACAATCATGA+AGG | 0.554036 | tig0026227:+15387 | None:intergenic |
| TTATGTCAATTGTTGGTGAT+CGG | 0.555097 | tig0026227:-15090 | Msa1427870:CDS |
| AGATGCAATTACTCACTTCG+AGG | 0.557847 | tig0026227:-13611 | Msa1427870:CDS |
| AGCAGCACATTTCAAAGGCT+CGG | 0.559189 | tig0026227:+16086 | None:intergenic |
| AGTGATAGCGGAGCTATTGG+AGG | 0.566440 | tig0026227:-15845 | Msa1427870:CDS |
| GATCTTGACAGAGCGGCACT+GGG | 0.570474 | tig0026227:-14151 | Msa1427870:CDS |
| AGAGTTTGCAGTAAACAGCT+AGG | 0.572784 | tig0026227:+19100 | None:intergenic |
| CTTGAGCTGCTACGACGAGA+AGG | 0.578244 | tig0026227:-13919 | Msa1427870:CDS |
| TTCAGGAACAGAGACAACTA+AGG | 0.578649 | tig0026227:-14019 | Msa1427870:CDS |
| TCCTGAAAGAAGAATGAGGA+AGG | 0.578946 | tig0026227:+15176 | None:intergenic |
| AAGTTACAAGCAGCTAATGT+TGG | 0.581575 | tig0026227:+15703 | None:intergenic |
| ATTCTTAGTATCTCCTGGAA+AGG | 0.582974 | tig0026227:-16195 | Msa1427870:CDS |
| AAAATGGCGGAAGGAAACTC+CGG | 0.586569 | tig0026227:-20889 | Msa1427870:CDS |
| CATTTGTACAAAAGGACTGG+AGG | 0.590917 | tig0026227:+14279 | None:intergenic |
| AACATCAATGACCGTGTGTG+CGG | 0.598742 | tig0026227:+16398 | None:intergenic |
| GGTCGAGCTTGCAGTTAAGG+TGG | 0.598914 | tig0026227:+19216 | None:intergenic |
| CTCACTTCGAGGAATTGGCT+GGG | 0.601390 | tig0026227:-13600 | Msa1427870:CDS |
| ATATTCTCTCAAGCTTGATG+AGG | 0.602071 | tig0026227:-15581 | Msa1427870:CDS |
| ACTACCTGAGATTGATGCAA+GGG | 0.602615 | tig0026227:-14484 | Msa1427870:CDS |
| AGCAGGAATTAGCAAAGGAG+TGG | 0.605019 | tig0026227:-13749 | Msa1427870:CDS |
| CCTCACTGGACTTGTTCACA+TGG | 0.605363 | tig0026227:-14235 | Msa1427870:CDS |
| TTGCACAGCATAACCAAGGA+AGG | 0.606135 | tig0026227:+17757 | None:intergenic |
| ACCTCAGCAGCACATTTCAA+AGG | 0.607870 | tig0026227:+16081 | None:intergenic |
| ATCTCCAAACAAAGGAAGTG+AGG | 0.608558 | tig0026227:+15313 | None:intergenic |
| TCAGACCTACACAGTGTACA+GGG | 0.610865 | tig0026227:-15947 | Msa1427870:CDS |
| GCTATGGAGATTTCTTCCAC+CGG | 0.617902 | tig0026227:-14067 | Msa1427870:CDS |
| TGATGATCATCTCAGTCTGT+CGG | 0.618224 | tig0026227:-17787 | Msa1427870:CDS |
| GATATTAAAGGCCGCACACA+CGG | 0.619564 | tig0026227:-16409 | Msa1427870:CDS |
| ACATTTCAGTCAATGCTGAA+AGG | 0.623736 | tig0026227:-13870 | Msa1427870:CDS |
| TGATGCACACTCATCCAAGA+TGG | 0.625184 | tig0026227:-19837 | Msa1427870:CDS |
| AGATTCTATATCTGAAGCCA+AGG | 0.626301 | tig0026227:-16970 | Msa1427870:intron |
| GACTACCTGAGATTGATGCA+AGG | 0.626991 | tig0026227:-14485 | Msa1427870:CDS |
| GATCTCCCTGTACACTGTGT+AGG | 0.630525 | tig0026227:+15942 | None:intergenic |
| CAAAGACAACACCAAATCCA+AGG | 0.631055 | tig0026227:+15816 | None:intergenic |
| TATACGGTGGATATCGGCGC+CGG | 0.632910 | tig0026227:+20870 | None:intergenic |
| GCATCACAATCTCCAAACAA+AGG | 0.634537 | tig0026227:+15305 | None:intergenic |
| GGTTTGAAGATTATTGGTGA+CGG | 0.634783 | tig0026227:-13712 | Msa1427870:CDS |
| TATGAAAGTGCTGCATCCGG+TGG | 0.636471 | tig0026227:+14051 | None:intergenic |
| AGATTCTTCTGTCGACAACA+GGG | 0.636635 | tig0026227:+18929 | None:intergenic |
| ATGAGGAAGGAAAACTGAGT+CGG | 0.636841 | tig0026227:+15189 | None:intergenic |
| AATTTCCTGAAAGAAGAATG+AGG | 0.639283 | tig0026227:+15172 | None:intergenic |
| AAATGCATCAGCAGTGATAG+CGG | 0.641985 | tig0026227:-15857 | Msa1427870:CDS |
| CTTCCAGCAGGAATTAGCAA+AGG | 0.643071 | tig0026227:-13754 | Msa1427870:CDS |
| GTGAGGAACTGAGCCAAATG+TGG | 0.646782 | tig0026227:+14252 | None:intergenic |
| TACTACAAGGCAATTCATGA+CGG | 0.647298 | tig0026227:+20623 | None:intergenic |
| AGTGAAGAAAGGATACTACA+AGG | 0.649053 | tig0026227:+20610 | None:intergenic |
| AGGAAGGAAAACTGAGTCGG+AGG | 0.649594 | tig0026227:+15192 | None:intergenic |
| ATTCACCGATATTAGTAACA+AGG | 0.649686 | tig0026227:-17045 | Msa1427870:CDS |
| AGAAGCTTGAGGTAGTGGAA+TGG | 0.649896 | tig0026227:-15765 | Msa1427870:CDS |
| GCGTTCTGAATTAATAAACT+GGG | 0.651433 | tig0026227:-16355 | Msa1427870:CDS |
| TTCACTTGATCTTGACAGAG+CGG | 0.651465 | tig0026227:-14158 | Msa1427870:CDS |
| GTTCTTGCTTCGAATGATGG+TGG | 0.656126 | tig0026227:-16231 | Msa1427870:CDS |
| GGAATTGGCTGGGAGTGGCG+AGG | 0.656699 | tig0026227:-13590 | Msa1427870:CDS |
| TACACTGTGTAGGTCTGATG+AGG | 0.659409 | tig0026227:+15952 | None:intergenic |
| TTCTGAATTAATAAACTGGG+AGG | 0.670862 | tig0026227:-16352 | Msa1427870:CDS |
| CGCCTCGGAGGATTTAACGG+CGG | 0.688230 | tig0026227:+20843 | None:intergenic |
| TGTTGTTGTAAAGCTATGCA+AGG | 0.691450 | tig0026227:-16379 | Msa1427870:CDS |
| CGCCGCCGTTAAATCCTCCG+AGG | 0.692251 | tig0026227:-20845 | Msa1427870:intron |
| ATGGAAGTAGCTCGCCTCGG+AGG | 0.692977 | tig0026227:+20831 | None:intergenic |
| AAAACTGGAACAGAAGCTTG+AGG | 0.694528 | tig0026227:-15776 | Msa1427870:CDS |
| TTGGTGACGGTCTTTCAGAG+TGG | 0.702019 | tig0026227:-13699 | Msa1427870:CDS |
| TGCAAGAGGAGAGTAAACAT+AGG | 0.703321 | tig0026227:+15421 | None:intergenic |
| CCTATTCAGAGCAATTTGCG+AGG | 0.704560 | tig0026227:-13556 | Msa1427870:CDS |
| TGGAATGCCAAACAAACCGG+AGG | 0.710686 | tig0026227:+14907 | None:intergenic |
| AATGTTGCACAGCATAACCA+AGG | 0.715536 | tig0026227:+17753 | None:intergenic |
| TAACGGCGGCGAGTATACGG+TGG | 0.718018 | tig0026227:+20857 | None:intergenic |
| CCATGTGAACAAGTCCAGTG+AGG | 0.723530 | tig0026227:+14235 | None:intergenic |
| AATATCGGTGAATTTCAACA+AGG | 0.727967 | tig0026227:+17055 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTATATATATAAAT+AGG | + | tig0026227:19541-19560 | None:intergenic | 0.0% |
| !!! | CTTTAAAGAAAATATAATAT+AGG | + | tig0026227:16738-16757 | None:intergenic | 10.0% |
| !!! | ACAATAAAATGAGTTTTATT+TGG | + | tig0026227:14137-14156 | None:intergenic | 15.0% |
| !!! | AAAGTACAAAATTAGTTTAA+AGG | + | tig0026227:14165-14184 | None:intergenic | 15.0% |
| !!! | TTTAAACTAATTTTGTACTT+TGG | - | tig0026227:14164-14183 | Msa1427870:CDS | 15.0% |
| !! | AATTACTTACTAAATATGTT+CGG | + | tig0026227:14276-14295 | None:intergenic | 15.0% |
| !! | AATTGTAAATTTCTAAATCA+AGG | - | tig0026227:14424-14443 | Msa1427870:CDS | 15.0% |
| !!! | TCTAAGATTTATATATTGAT+TGG | + | tig0026227:14811-14830 | None:intergenic | 15.0% |
| !!! | TTTGTTGTGTTTTTAAAAAA+CGG | - | tig0026227:14837-14856 | Msa1427870:intron | 15.0% |
| !!! | GTTAAAATCTATGTTTTTTA+AGG | + | tig0026227:15220-15239 | None:intergenic | 15.0% |
| !! | ATTACACAATATTGTTAATT+AGG | - | tig0026227:15358-15377 | Msa1427870:CDS | 15.0% |
| !! | TTAATATTTGTATTATGACT+CGG | - | tig0026227:16033-16052 | Msa1427870:CDS | 15.0% |
| !!! | ACATTGGTATAATTTAAAAT+GGG | + | tig0026227:16102-16121 | None:intergenic | 15.0% |
| !! | AACATTGGTATAATTTAAAA+TGG | + | tig0026227:16103-16122 | None:intergenic | 15.0% |
| !! | AAAAATGTCTCATAATATTT+GGG | - | tig0026227:16813-16832 | Msa1427870:intron | 15.0% |
| !!! | AGTTTTACTACAAATAATAA+TGG | - | tig0026227:16935-16954 | Msa1427870:intron | 15.0% |
| !! | AACATAAATATAAATGATTC+AGG | + | tig0026227:17219-17238 | None:intergenic | 15.0% |
| !! | ATGATAAATTTAAACATTCA+AGG | + | tig0026227:17732-17751 | None:intergenic | 15.0% |
| !! | TATAAATAGGCATATAATAA+TGG | + | tig0026227:19528-19547 | None:intergenic | 15.0% |
| !!! | GTCATTTTCTCAAAATTTTA+CGG | - | tig0026227:13996-14015 | Msa1427870:CDS | 20.0% |
| !! | AGTACCATTGTTTAATAATT+CGG | + | tig0026227:15063-15082 | None:intergenic | 20.0% |
| !! | AAGAATATATATTCCTGAAA+AGG | + | tig0026227:15327-15346 | None:intergenic | 20.0% |
| !!! | AGGAGTTTTTTTTTTTTGAA+TGG | - | tig0026227:15472-15491 | Msa1427870:CDS | 20.0% |
| !! | TACGTACATATACATATATA+TGG | - | tig0026227:15569-15588 | Msa1427870:CDS | 20.0% |
| !! | ACGTACATATACATATATAT+GGG | - | tig0026227:15570-15589 | Msa1427870:CDS | 20.0% |
| !! | TTATTTCAAATCACTAATCA+AGG | + | tig0026227:15775-15794 | None:intergenic | 20.0% |
| !!! | AAAAAAACACTTGTTGATTA+TGG | - | tig0026227:15816-15835 | Msa1427870:CDS | 20.0% |
| !! | TCTATATGCTTTATGTATAT+AGG | - | tig0026227:15912-15931 | Msa1427870:CDS | 20.0% |
| !! | GAAAAATGTCTCATAATATT+TGG | - | tig0026227:16812-16831 | Msa1427870:intron | 20.0% |
| !!! | CTCAGTAATTTAGAATATAT+TGG | - | tig0026227:16842-16861 | Msa1427870:intron | 20.0% |
| !! | ATATATTGGATTATCTCTTA+TGG | - | tig0026227:16856-16875 | Msa1427870:intron | 20.0% |
| !! | TATTATGTGTGAAGAAATAT+GGG | + | tig0026227:16888-16907 | None:intergenic | 20.0% |
| !! | ATATTATGTGTGAAGAAATA+TGG | + | tig0026227:16889-16908 | None:intergenic | 20.0% |
| !! | TTATTGTCATTATATGATCT+AGG | - | tig0026227:17449-17468 | Msa1427870:intron | 20.0% |
| !! | AGTGTAAATATGAAATGAAT+GGG | + | tig0026227:17840-17859 | None:intergenic | 20.0% |
| !! | AATATCTGATAAACTAAAAC+TGG | - | tig0026227:18552-18571 | Msa1427870:intron | 20.0% |
| !! | AATTGAAACCAAAAACTTTA+TGG | + | tig0026227:19885-19904 | None:intergenic | 20.0% |
| !!! | GATATTTTCAATCTGTATTA+TGG | + | tig0026227:20032-20051 | None:intergenic | 20.0% |
| !! | CTTTCATATGATATAATTTC+AGG | - | tig0026227:20307-20326 | Msa1427870:intron | 20.0% |
| !!! | GTTTCCTTTTTTTATTTGTT+TGG | + | tig0026227:20570-20589 | None:intergenic | 20.0% |
| !! | ACTATAAAACAAACATCAAA+GGG | + | tig0026227:20820-20839 | None:intergenic | 20.0% |
| !! | TACTATAAAACAAACATCAA+AGG | + | tig0026227:20821-20840 | None:intergenic | 20.0% |
| !!! | ATTAAATTTTACTGAACATC+TGG | + | tig0026227:20889-20908 | None:intergenic | 20.0% |
| ! | ATGTATAAACTAAACAGTCT+TGG | + | tig0026227:14367-14386 | None:intergenic | 25.0% |
| ! | TTATACTAAATAGCATATCG+CGG | + | tig0026227:14910-14929 | None:intergenic | 25.0% |
| ! | TATATATTCCTGAAAAGGTT+AGG | + | tig0026227:15322-15341 | None:intergenic | 25.0% |
| ! | TTGTTAATTAGGCTAGTATA+TGG | - | tig0026227:15369-15388 | Msa1427870:CDS | 25.0% |
| ! | AAAAAAAAAAAACTCCTACC+TGG | + | tig0026227:15469-15488 | None:intergenic | 25.0% |
| ! | AGCAAGTTATAACTAAAAAG+TGG | - | tig0026227:15627-15646 | Msa1427870:CDS | 25.0% |
| ! | AAAATGATTGAGAGTAAATG+TGG | + | tig0026227:15739-15758 | None:intergenic | 25.0% |
| !! | TTGGTATAATTTAAAATGGG+AGG | + | tig0026227:16099-16118 | None:intergenic | 25.0% |
| ! | TAGATAGATGAAAACAACAT+TGG | + | tig0026227:16118-16137 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGTCAGTTACAGA+GGG | + | tig0026227:16299-16318 | None:intergenic | 25.0% |
| !!! | ATTTTTAAAGTCAGTTACAG+AGG | + | tig0026227:16300-16319 | None:intergenic | 25.0% |
| !! | CTGTAACTGACTTTAAAAAT+AGG | - | tig0026227:16300-16319 | Msa1427870:CDS | 25.0% |
| ! | ACTAATTCTTTAGTGTTTAG+AGG | - | tig0026227:16356-16375 | Msa1427870:CDS | 25.0% |
| ! | ATGTCATGATTATTTATCCA+TGG | - | tig0026227:16446-16465 | Msa1427870:intron | 25.0% |
| ! | ATGTTTCCGTATTTATTATC+TGG | - | tig0026227:16907-16926 | Msa1427870:intron | 25.0% |
| ! | TACACTCCAGATAATAAATA+CGG | + | tig0026227:16916-16935 | None:intergenic | 25.0% |
| !! | AAATTGTTATTGACTGATTG+TGG | + | tig0026227:16986-17005 | None:intergenic | 25.0% |
| !! | TCATATTTGCTGAGATTATA+GGG | + | tig0026227:17051-17070 | None:intergenic | 25.0% |
| !! | TTCATATTTGCTGAGATTAT+AGG | + | tig0026227:17052-17071 | None:intergenic | 25.0% |
| ! | CAATTCCTTGTTACTAATAT+CGG | + | tig0026227:17306-17325 | None:intergenic | 25.0% |
| ! | TATTAGTAACAAGGAATTGA+TGG | - | tig0026227:17307-17326 | Msa1427870:intron | 25.0% |
| ! | TAGAGATGATGTAATCAAAA+AGG | + | tig0026227:17506-17525 | None:intergenic | 25.0% |
| !!! | TTTTAGTATTTTTAGTCGTG+TGG | - | tig0026227:17751-17770 | Msa1427870:CDS | 25.0% |
| ! | CAGTGTAAATATGAAATGAA+TGG | + | tig0026227:17841-17860 | None:intergenic | 25.0% |
| !! | AATGATTGAATTTTCTGCTT+AGG | + | tig0026227:17905-17924 | None:intergenic | 25.0% |
| ! | AAGCAGAAAATTCAATCATT+TGG | - | tig0026227:17905-17924 | Msa1427870:intron | 25.0% |
| ! | ATTTGGATCAGAGATATTAA+AGG | - | tig0026227:17922-17941 | Msa1427870:intron | 25.0% |
| ! | AGTGAATATAGCAAATATAG+TGG | - | tig0026227:18213-18232 | Msa1427870:intron | 25.0% |
| !!! | ATATTTTAACTGCATTGATC+AGG | + | tig0026227:18360-18379 | None:intergenic | 25.0% |
| ! | TGCAATCAATGTAAGTAATT+TGG | - | tig0026227:19493-19512 | Msa1427870:intron | 25.0% |
| ! | AGTGATCAACAGTAATTAAT+AGG | + | tig0026227:19566-19585 | None:intergenic | 25.0% |
| ! | AAAGTAAAACATATGCATGT+GGG | + | tig0026227:19724-19743 | None:intergenic | 25.0% |
| ! | AAAAGTAAAACATATGCATG+TGG | + | tig0026227:19725-19744 | None:intergenic | 25.0% |
| !! | ACATGCATATGTTTTACTTT+TGG | - | tig0026227:19724-19743 | Msa1427870:intron | 25.0% |
| !!! | ATATGTTTTACTTTTGGACT+TGG | - | tig0026227:19730-19749 | Msa1427870:intron | 25.0% |
| ! | TACTGTTGACAAAGAAATAA+AGG | - | tig0026227:19922-19941 | Msa1427870:intron | 25.0% |
| ! | TGAGCCAAACAAATAAAAAA+AGG | - | tig0026227:20563-20582 | Msa1427870:intron | 25.0% |
| ! | AAAAACGGTTTGAAGATTAT+TGG | - | tig0026227:20625-20644 | Msa1427870:CDS | 25.0% |
| AATCAGTGAACAGAATGAAA+AGG | + | tig0026227:13569-13588 | None:intergenic | 30.0% | |
| !! | TTCATTCTGTTCACTGATTT+AGG | - | tig0026227:13570-13589 | Msa1427870:CDS | 30.0% |
| !! | TCATTCTGTTCACTGATTTA+GGG | - | tig0026227:13571-13590 | Msa1427870:CDS | 30.0% |
| AAAATGAAAGCAAAACGAAG+TGG | + | tig0026227:13613-13632 | None:intergenic | 30.0% | |
| CAAGCTTAAATTTCCTAGAT+CGG | + | tig0026227:13672-13691 | None:intergenic | 30.0% | |
| TTCAATATAATCGCATGTGT+CGG | + | tig0026227:13972-13991 | None:intergenic | 30.0% | |
| AGAAACTCTAAATGTATGCT+TGG | - | tig0026227:14208-14227 | Msa1427870:CDS | 30.0% | |
| AAAACTTACATTTGACTCTG+AGG | + | tig0026227:14243-14262 | None:intergenic | 30.0% | |
| ! | CAGAGTCAAATGTAAGTTTT+CGG | - | tig0026227:14243-14262 | Msa1427870:CDS | 30.0% |
| CTAAATCAAGGTCTTAATCA+AGG | - | tig0026227:14436-14455 | Msa1427870:CDS | 30.0% | |
| CACACACAAATTACTAAACA+TGG | + | tig0026227:14548-14567 | None:intergenic | 30.0% | |
| GCAAATAGACATCATATGAA+CGG | + | tig0026227:14590-14609 | None:intergenic | 30.0% | |
| ! | TCATAAATCAAGTCAAGTTG+TGG | + | tig0026227:14621-14640 | None:intergenic | 30.0% |
| CTTAGAATGGTAATATTGCA+TGG | - | tig0026227:14782-14801 | Msa1427870:intron | 30.0% | |
| TTGTGAAATAGATGCTATAG+CGG | - | tig0026227:14934-14953 | Msa1427870:CDS | 30.0% | |
| ! | AATTTTGTCAATTGCAGAAG+TGG | + | tig0026227:15014-15033 | None:intergenic | 30.0% |
| ACTTCTGCAATTGACAAAAT+TGG | - | tig0026227:15013-15032 | Msa1427870:CDS | 30.0% | |
| ! | AGTGCCGAATTATTAAACAA+TGG | - | tig0026227:15056-15075 | Msa1427870:CDS | 30.0% |
| !! | AAGTAGTAGAGTACTGAAAT+AGG | + | tig0026227:15091-15110 | None:intergenic | 30.0% |
| ! | TTATATCTCCTAACCTTTTC+AGG | - | tig0026227:15311-15330 | Msa1427870:CDS | 30.0% |
| TGTACGTATGTATGTATGTA+TGG | + | tig0026227:15557-15576 | None:intergenic | 30.0% | |
| TTTCAAATCACTAATCAAGG+AGG | + | tig0026227:15772-15791 | None:intergenic | 30.0% | |
| AAGATATCATATACCTTTGC+TGG | - | tig0026227:15867-15886 | Msa1427870:CDS | 30.0% | |
| TACTACAAACAGTGCTTATT+TGG | - | tig0026227:16323-16342 | Msa1427870:CDS | 30.0% | |
| !! | ATGTATACTAGCTTTAGCTT+GGG | + | tig0026227:16409-16428 | None:intergenic | 30.0% |
| !! | AATGTATACTAGCTTTAGCT+TGG | + | tig0026227:16410-16429 | None:intergenic | 30.0% |
| CATACACAGCAAGAAAATTT+AGG | + | tig0026227:16513-16532 | None:intergenic | 30.0% | |
| CTCAGCAAATATGAATAGAA+TGG | - | tig0026227:17057-17076 | Msa1427870:CDS | 30.0% | |
| AAGAAAAGTTGTCAACACTT+TGG | + | tig0026227:17084-17103 | None:intergenic | 30.0% | |
| ! | TGTTGACAACTTTTCTTATG+TGG | - | tig0026227:17087-17106 | Msa1427870:CDS | 30.0% |
| ! | GTTGACAACTTTTCTTATGT+GGG | - | tig0026227:17088-17107 | Msa1427870:CDS | 30.0% |
| ! | ATTTTCAGCATCAGCTTTTT+CGG | - | tig0026227:17265-17284 | Msa1427870:intron | 30.0% |
| AATATCGGTGAATTTCAACA+AGG | + | tig0026227:17291-17310 | None:intergenic | 30.0% | |
| ATTCACCGATATTAGTAACA+AGG | - | tig0026227:17298-17317 | Msa1427870:intron | 30.0% | |
| CAGGAAGAAAAATATTACCT+TGG | + | tig0026227:17393-17412 | None:intergenic | 30.0% | |
| AATTGTCAAGTTTCATACAC+AGG | + | tig0026227:17412-17431 | None:intergenic | 30.0% | |
| TGTGTATGAAACTTGACAAT+TGG | - | tig0026227:17411-17430 | Msa1427870:intron | 30.0% | |
| TTAAATATCAAACCTGTCTG+TGG | - | tig0026227:17580-17599 | Msa1427870:intron | 30.0% | |
| TCAAAGGACTGATAAATCAT+TGG | + | tig0026227:17660-17679 | None:intergenic | 30.0% | |
| AATGATTTATCAGTCCTTTG+AGG | - | tig0026227:17659-17678 | Msa1427870:intron | 30.0% | |
| TAAACATTCAAGGACTACAT+TGG | + | tig0026227:17722-17741 | None:intergenic | 30.0% | |
| AATGGGAGAAATTTCATCAT+TGG | + | tig0026227:17823-17842 | None:intergenic | 30.0% | |
| ! | TGCGTTCTGAATTAATAAAC+TGG | - | tig0026227:17987-18006 | Msa1427870:intron | 30.0% |
| ! | GCGTTCTGAATTAATAAACT+GGG | - | tig0026227:17988-18007 | Msa1427870:intron | 30.0% |
| TTCTGAATTAATAAACTGGG+AGG | - | tig0026227:17991-18010 | Msa1427870:intron | 30.0% | |
| !! | ATTTGGTTATGTTGATAGCA+TGG | + | tig0026227:18063-18082 | None:intergenic | 30.0% |
| ! | CAGCTTTTCTATTGTGTATT+TGG | + | tig0026227:18080-18099 | None:intergenic | 30.0% |
| ATAGAAAAGCTGTCTCAAAT+TGG | - | tig0026227:18088-18107 | Msa1427870:intron | 30.0% | |
| TCAATATTCTTAGTATCTCC+TGG | - | tig0026227:18143-18162 | Msa1427870:intron | 30.0% | |
| !! | GTTGTTTCTTTGCTTCAAAT+TGG | - | tig0026227:18172-18191 | Msa1427870:intron | 30.0% |
| TTTCTTTGCTTCAAATTGGT+GGG | - | tig0026227:18176-18195 | Msa1427870:intron | 30.0% | |
| TTTCTGTAACTGAAGCTAAA+AGG | - | tig0026227:18311-18330 | Msa1427870:intron | 30.0% | |
| TTGATCAGGTAAAATTTCAC+TGG | + | tig0026227:18346-18365 | None:intergenic | 30.0% | |
| GTTAATGAAGATTCTCATTC+TGG | - | tig0026227:18607-18626 | Msa1427870:intron | 30.0% | |
| CAAGTATTAGTACTCTTGAT+CGG | + | tig0026227:18711-18730 | None:intergenic | 30.0% | |
| CAAGCTTGAGAGAATATTTA+AGG | + | tig0026227:18759-18778 | None:intergenic | 30.0% | |
| !!! | TCAGAAGCTTAATTGGTTTT+TGG | - | tig0026227:18804-18823 | Msa1427870:intron | 30.0% |
| !!! | GTTTTTGGATGTTTTAGTTG+AGG | - | tig0026227:18819-18838 | Msa1427870:intron | 30.0% |
| AAAGAAGTTCTCTAGTAAGA+AGG | + | tig0026227:19007-19026 | None:intergenic | 30.0% | |
| ATGTTCATTACTTAAGCTGT+TGG | - | tig0026227:19125-19144 | Msa1427870:CDS | 30.0% | |
| TGTTCATTACTTAAGCTGTT+GGG | - | tig0026227:19126-19145 | Msa1427870:CDS | 30.0% | |
| AATTTCCTGAAAGAAGAATG+AGG | + | tig0026227:19174-19193 | None:intergenic | 30.0% | |
| !! | TTATGTCAATTGTTGGTGAT+CGG | - | tig0026227:19253-19272 | Msa1427870:intron | 30.0% |
| ! | CTTGTCACAAATTTTGTGTT+TGG | - | tig0026227:19284-19303 | Msa1427870:intron | 30.0% |
| CTTTAATGAAGCTTCATTGA+CGG | - | tig0026227:19407-19426 | Msa1427870:intron | 30.0% | |
| TATCAAAGACTCCTAAATCT+TGG | - | tig0026227:19670-19689 | Msa1427870:intron | 30.0% | |
| ! | GATTTTTGCTTCCAAGATTT+AGG | + | tig0026227:19684-19703 | None:intergenic | 30.0% |
| TGGAATCAGAATGATAATTC+TGG | + | tig0026227:19799-19818 | None:intergenic | 30.0% | |
| AAATAAAGGACCATTCTCTT+CGG | - | tig0026227:19936-19955 | Msa1427870:intron | 30.0% | |
| TCTAGTGATCATTTCATATC+TGG | - | tig0026227:19973-19992 | Msa1427870:intron | 30.0% | |
| CAAATCGAATGATATTGAAC+AGG | - | tig0026227:20006-20025 | Msa1427870:intron | 30.0% | |
| ! | GAATTTTCAGAAAGTGATGA+TGG | - | tig0026227:20130-20149 | Msa1427870:intron | 30.0% |
| CATTTAGCATTAACTGCATT+TGG | - | tig0026227:20223-20242 | Msa1427870:intron | 30.0% | |
| CAAGAACCAATTAAATAGCA+TGG | - | tig0026227:20528-20547 | Msa1427870:intron | 30.0% | |
| CGAAAAATTGAAGCGAGAAA+TGG | + | tig0026227:13534-13553 | None:intergenic | 35.0% | |
| ! | TTTGCTTTCATTTTCGTTGC+AGG | - | tig0026227:13619-13638 | Msa1427870:CDS | 35.0% |
| GTTCAATTATTCACCGATCT+AGG | - | tig0026227:13656-13675 | Msa1427870:CDS | 35.0% | |
| TACTACAAGGCAATTCATGA+CGG | + | tig0026227:13723-13742 | None:intergenic | 35.0% | |
| AGTGAAGAAAGGATACTACA+AGG | + | tig0026227:13736-13755 | None:intergenic | 35.0% | |
| GAAGAAGATGAAGTGAAGAA+AGG | + | tig0026227:13747-13766 | None:intergenic | 35.0% | |
| ! | AGTCAAATGTAAGTTTTCGG+CGG | - | tig0026227:14246-14265 | Msa1427870:CDS | 35.0% |
| !! | AGCACAAATTTGTTAGCTGT+CGG | - | tig0026227:14688-14707 | Msa1427870:intron | 35.0% |
| !! | CTTACTTACTTCGGATTAGT+AGG | + | tig0026227:14727-14746 | None:intergenic | 35.0% |
| CTACTAATCCGAAGTAAGTA+AGG | - | tig0026227:14725-14744 | Msa1427870:intron | 35.0% | |
| ! | ACTATTGATGGTTGTCATCA+GGG | - | tig0026227:14753-14772 | Msa1427870:intron | 35.0% |
| ACATGTGAAAGTTTCCCAAT+AGG | + | tig0026227:15151-15170 | None:intergenic | 35.0% | |
| TTGGGAAACTTTCACATGTT+TGG | - | tig0026227:15152-15171 | Msa1427870:CDS | 35.0% | |
| ACTTCTGTTTAGCATGCATT+GGG | + | tig0026227:15184-15203 | None:intergenic | 35.0% | |
| TACTTCTGTTTAGCATGCAT+TGG | + | tig0026227:15185-15204 | None:intergenic | 35.0% | |
| !! | GCTAAACAGAAGTATTCTAC+AGG | - | tig0026227:15191-15210 | Msa1427870:CDS | 35.0% |
| AATTAGGCTAGTATATGGTC+TGG | - | tig0026227:15374-15393 | Msa1427870:CDS | 35.0% | |
| GTGTGAATAAGAACTGTTCA+AGG | + | tig0026227:15516-15535 | None:intergenic | 35.0% | |
| ! | CACACACAAAAGCTTTTACT+TGG | - | tig0026227:15531-15550 | Msa1427870:CDS | 35.0% |
| CTAAAAGACACCTTCATGAA+AGG | + | tig0026227:15609-15628 | None:intergenic | 35.0% | |
| TTGCTAAAAGACACCTTCAA+AGG | - | tig0026227:15673-15692 | Msa1427870:CDS | 35.0% | |
| TGCTAAAAGACACCTTCAAA+GGG | - | tig0026227:15674-15693 | Msa1427870:CDS | 35.0% | |
| CATTTACATTTGTCCAGCAA+AGG | + | tig0026227:15883-15902 | None:intergenic | 35.0% | |
| ! | AATTTAAAATGGGAGGCAAC+AGG | + | tig0026227:16092-16111 | None:intergenic | 35.0% |
| CGCTAATACTTATGAGTCAT+TGG | + | tig0026227:16150-16169 | None:intergenic | 35.0% | |
| ! | AGCTTCAGCTTCAAATTTTC+TGG | - | tig0026227:16483-16502 | Msa1427870:intron | 35.0% |
| AGACAACTCAGCAAATCAAT+AGG | + | tig0026227:16645-16664 | None:intergenic | 35.0% | |
| TTCGAAACATGAGTAATGCT+CGG | + | tig0026227:16669-16688 | None:intergenic | 35.0% | |
| GAAAGACAACTCAAGAATGT+TGG | + | tig0026227:16697-16716 | None:intergenic | 35.0% | |
| AATATAGGCTCCACAAAACA+TGG | + | tig0026227:16723-16742 | None:intergenic | 35.0% | |
| ! | ACAACTTTTCTTATGTGGGA+TGG | - | tig0026227:17092-17111 | Msa1427870:CDS | 35.0% |
| !! | ATGTGGGATGGTTTGTTAAA+TGG | - | tig0026227:17104-17123 | Msa1427870:intron | 35.0% |
| TTGCAAAACTCTCAAATCAG+TGG | + | tig0026227:17133-17152 | None:intergenic | 35.0% | |
| !! | CTGATTTGAGAGTTTTGCAA+AGG | - | tig0026227:17133-17152 | Msa1427870:intron | 35.0% |
| ! | TTATGTTCTGCAGCTTCTTT+TGG | - | tig0026227:17232-17251 | Msa1427870:intron | 35.0% |
| AAGCTGATGCTGAAAATCTT+AGG | + | tig0026227:17262-17281 | None:intergenic | 35.0% | |
| ! | AGATTCTATATCTGAAGCCA+AGG | - | tig0026227:17373-17392 | Msa1427870:intron | 35.0% |
| GTATGAAACTTGACAATTGG+AGG | - | tig0026227:17414-17433 | Msa1427870:intron | 35.0% | |
| GTCGTACACTTCAAATAATG+TGG | + | tig0026227:17548-17567 | None:intergenic | 35.0% | |
| CACAAGTCTCAAAATATCAG+CGG | + | tig0026227:17687-17706 | None:intergenic | 35.0% | |
| GTTCGATGATAGTTAATGCT+AGG | - | tig0026227:17775-17794 | Msa1427870:CDS | 35.0% | |
| TGTTGTTGTAAAGCTATGCA+AGG | - | tig0026227:17964-17983 | Msa1427870:intron | 35.0% | |
| ATAGCATGGACAACATGAAT+AGG | + | tig0026227:18049-18068 | None:intergenic | 35.0% | |
| ATTCTTAGTATCTCCTGGAA+AGG | - | tig0026227:18148-18167 | Msa1427870:intron | 35.0% | |
| GTTTCTTTGCTTCAAATTGG+TGG | - | tig0026227:18175-18194 | Msa1427870:intron | 35.0% | |
| TTCTTTGCTTCAAATTGGTG+GGG | - | tig0026227:18177-18196 | Msa1427870:intron | 35.0% | |
| AAGTTACAAGCAGCTAATGT+TGG | + | tig0026227:18643-18662 | None:intergenic | 35.0% | |
| AGCTGCTTGTAACTTTACAT+TGG | - | tig0026227:18648-18667 | Msa1427870:intron | 35.0% | |
| !! | CGATCAAGAGTACTAATACT+TGG | - | tig0026227:18709-18728 | Msa1427870:intron | 35.0% |
| ATATTCTCTCAAGCTTGATG+AGG | - | tig0026227:18762-18781 | Msa1427870:intron | 35.0% | |
| CGATTACTCAGAAGCTTAAT+TGG | - | tig0026227:18797-18816 | Msa1427870:intron | 35.0% | |
| TTGCAACTTCCATCATTATC+TGG | - | tig0026227:18868-18887 | Msa1427870:intron | 35.0% | |
| TGAAGAGATCACAATCATGA+AGG | + | tig0026227:18959-18978 | None:intergenic | 35.0% | |
| GCAATATGCTGAAACACAAA+TGG | - | tig0026227:19080-19099 | Msa1427870:intron | 35.0% | |
| TACCTGTTGTGAAAAATCAG+TGG | - | tig0026227:19218-19237 | Msa1427870:CDS | 35.0% | |
| !!! | AACCACTGATTTTTCACAAC+AGG | + | tig0026227:19223-19242 | None:intergenic | 35.0% |
| TGAAAAATCAGTGGTTGAAG+AGG | - | tig0026227:19227-19246 | Msa1427870:CDS | 35.0% | |
| ! | GAGGTGTTTATGTCAATTGT+TGG | - | tig0026227:19246-19265 | Msa1427870:CDS | 35.0% |
| GAAGCAGAGAGAATAAAAAC+TGG | + | tig0026227:19459-19478 | None:intergenic | 35.0% | |
| GTGAAGGGATAAAAGAAATC+AGG | + | tig0026227:19772-19791 | None:intergenic | 35.0% | |
| !! | GATAATTCTGGTTCAGTGAA+GGG | + | tig0026227:19787-19806 | None:intergenic | 35.0% |
| !! | TGATAATTCTGGTTCAGTGA+AGG | + | tig0026227:19788-19807 | None:intergenic | 35.0% |
| AAATGGGAACACTATTCGTA+AGG | + | tig0026227:19823-19842 | None:intergenic | 35.0% | |
| CTTTCCTTGCTGCATAAAAT+GGG | + | tig0026227:19839-19858 | None:intergenic | 35.0% | |
| TCTTTCCTTGCTGCATAAAA+TGG | + | tig0026227:19840-19859 | None:intergenic | 35.0% | |
| TTGCATTTGTACAAAAGGAC+TGG | + | tig0026227:20070-20089 | None:intergenic | 35.0% | |
| ! | GTGGTTTGCATTTGTACAAA+AGG | + | tig0026227:20075-20094 | None:intergenic | 35.0% |
| GTACAAATGCAAACCACATT+TGG | - | tig0026227:20078-20097 | Msa1427870:intron | 35.0% | |
| !! | CAGCATTGACTGAAATGTTA+TGG | + | tig0026227:20471-20490 | None:intergenic | 35.0% |
| ACATTTCAGTCAATGCTGAA+AGG | - | tig0026227:20473-20492 | Msa1427870:intron | 35.0% | |
| ! | CGACTTCCATGCTATTTAAT+TGG | + | tig0026227:20537-20556 | None:intergenic | 35.0% |
| AAAAAAAGGAAACTTCCAGC+AGG | - | tig0026227:20577-20596 | Msa1427870:intron | 35.0% | |
| GGTTTGAAGATTATTGGTGA+CGG | - | tig0026227:20631-20650 | Msa1427870:CDS | 35.0% | |
| ATACTTGACATGCAGTTCAT+TGG | + | tig0026227:20689-20708 | None:intergenic | 35.0% | |
| AATTACTCACTTCGAGGAAT+TGG | - | tig0026227:20738-20757 | Msa1427870:intron | 35.0% | |
| ! | ATTCATGACGGAAGCATGAT+CGG | + | tig0026227:13711-13730 | None:intergenic | 40.0% |
| AAGTATGAAGCCTTGACATG+TGG | + | tig0026227:14026-14045 | None:intergenic | 40.0% | |
| TACACGTGCATGCACAAATT+CGG | + | tig0026227:14480-14499 | None:intergenic | 40.0% | |
| !! | CTTACTTCGGATTAGTAGGA+AGG | + | tig0026227:14723-14742 | None:intergenic | 40.0% |
| AGTGTCAGCCTTACTTACTT+CGG | + | tig0026227:14736-14755 | None:intergenic | 40.0% | |
| AGTAAGGCTGACACTATTGA+TGG | - | tig0026227:14741-14760 | Msa1427870:intron | 40.0% | |
| ! | CACTATTGATGGTTGTCATC+AGG | - | tig0026227:14752-14771 | Msa1427870:intron | 40.0% |
| TTTGCAGTAAACAGCTAGGT+AGG | + | tig0026227:15242-15261 | None:intergenic | 40.0% | |
| AGAGTTTGCAGTAAACAGCT+AGG | + | tig0026227:15246-15265 | None:intergenic | 40.0% | |
| TTACTGCAAACTCTCACTCT+TGG | - | tig0026227:15252-15271 | Msa1427870:CDS | 40.0% | |
| AGATTCTTCTGTCGACAACA+GGG | + | tig0026227:15417-15436 | None:intergenic | 40.0% | |
| TGCTAGAAGACCTTTCATGA+AGG | - | tig0026227:15596-15615 | Msa1427870:CDS | 40.0% | |
| AAGTGGATAATCACACCTTG+TGG | - | tig0026227:15644-15663 | Msa1427870:CDS | 40.0% | |
| ! | TTTTAGCAATCCACACCACA+AGG | + | tig0026227:15662-15681 | None:intergenic | 40.0% |
| TCAGTACTGCAATATGCTCA+AGG | - | tig0026227:16005-16024 | Msa1427870:CDS | 40.0% | |
| GTTAGCGTTTAAGTGAGTGA+AGG | + | tig0026227:16271-16290 | None:intergenic | 40.0% | |
| GCTGTGTATGATTTCTTGCT+AGG | - | tig0026227:16523-16542 | Msa1427870:intron | 40.0% | |
| CAGACTGAGATGATCATCAA+TGG | + | tig0026227:16555-16574 | None:intergenic | 40.0% | |
| TGATGATCATCTCAGTCTGT+CGG | - | tig0026227:16556-16575 | Msa1427870:intron | 40.0% | |
| AATGTTGCACAGCATAACCA+AGG | + | tig0026227:16593-16612 | None:intergenic | 40.0% | |
| !! | GTCTTTCTAGCCATGTTTTG+TGG | - | tig0026227:16710-16729 | Msa1427870:intron | 40.0% |
| GCTTAAAGCTTCAGCTTGAA+CGG | - | tig0026227:16773-16792 | Msa1427870:intron | 40.0% | |
| !! | TGGGATGGTTTGTTAAATGG+TGG | - | tig0026227:17107-17126 | Msa1427870:intron | 40.0% |
| ! | GAGTTTTGCAAAGGTCATTC+AGG | - | tig0026227:17142-17161 | Msa1427870:intron | 40.0% |
| AAATATCAGCGGTACCTCAA+AGG | + | tig0026227:17676-17695 | None:intergenic | 40.0% | |
| !!! | CGCTGATATTTTGAGACTTG+TGG | - | tig0026227:17685-17704 | Msa1427870:intron | 40.0% |
| !!! | TTTTGAGACTTGTGGTCTTC+CGG | - | tig0026227:17693-17712 | Msa1427870:intron | 40.0% |
| ! | TTTGTATGTGTCGCTAAGCA+TGG | - | tig0026227:17867-17886 | Msa1427870:intron | 40.0% |
| CTTGTGATGAAAAACAGTCG+AGG | - | tig0026227:18014-18033 | Msa1427870:intron | 40.0% | |
| CAAAGAAACAACACCTTTCC+AGG | + | tig0026227:18164-18183 | None:intergenic | 40.0% | |
| TCTTTGCTTCAAATTGGTGG+GGG | - | tig0026227:18178-18197 | Msa1427870:intron | 40.0% | |
| AAATGCATCAGCAGTGATAG+CGG | - | tig0026227:18486-18505 | Msa1427870:intron | 40.0% | |
| CAAAGACAACACCAAATCCA+AGG | + | tig0026227:18530-18549 | None:intergenic | 40.0% | |
| AAAACTGGAACAGAAGCTTG+AGG | - | tig0026227:18567-18586 | Msa1427870:intron | 40.0% | |
| CAGCTAATGTTGGACAATCA+AGG | + | tig0026227:18633-18652 | None:intergenic | 40.0% | |
| TTTCCAGAGCCAGATAATGA+TGG | + | tig0026227:18880-18899 | None:intergenic | 40.0% | |
| TGCAAGAGGAGAGTAAACAT+AGG | + | tig0026227:18925-18944 | None:intergenic | 40.0% | |
| !!! | AGGTTTTGAATGCTTGCAAG+AGG | + | tig0026227:18939-18958 | None:intergenic | 40.0% |
| TGATCTCTTCAAGTACAGCT+TGG | - | tig0026227:18968-18987 | Msa1427870:intron | 40.0% | |
| TCATCCTCACTTCCTTTGTT+TGG | - | tig0026227:19026-19045 | Msa1427870:intron | 40.0% | |
| ATCTCCAAACAAAGGAAGTG+AGG | + | tig0026227:19033-19052 | None:intergenic | 40.0% | |
| GCATCACAATCTCCAAACAA+AGG | + | tig0026227:19041-19060 | None:intergenic | 40.0% | |
| ATGAGGAAGGAAAACTGAGT+CGG | + | tig0026227:19157-19176 | None:intergenic | 40.0% | |
| TCCTTCCTCATTCTTCTTTC+AGG | - | tig0026227:19166-19185 | Msa1427870:CDS | 40.0% | |
| TCCTGAAAGAAGAATGAGGA+AGG | + | tig0026227:19170-19189 | None:intergenic | 40.0% | |
| !! | TGTTTGGCTCTGTTCATTGA+AGG | - | tig0026227:19300-19319 | Msa1427870:intron | 40.0% |
| !! | GTTTGGCTCTGTTCATTGAA+GGG | - | tig0026227:19301-19320 | Msa1427870:intron | 40.0% |
| AACTGGAATGCCAAACAAAC+CGG | + | tig0026227:19442-19461 | None:intergenic | 40.0% | |
| ! | TGTTCCCATTTTATGCAGCA+AGG | - | tig0026227:19832-19851 | Msa1427870:CDS | 40.0% |
| ACTACCTGAGATTGATGCAA+GGG | - | tig0026227:19859-19878 | Msa1427870:intron | 40.0% | |
| ! | TGCAAGGGCCATAAAGTTTT+TGG | - | tig0026227:19874-19893 | Msa1427870:intron | 40.0% |
| CATTTGTACAAAAGGACTGG+AGG | + | tig0026227:20067-20086 | None:intergenic | 40.0% | |
| TTCACTTGATCTTGACAGAG+CGG | - | tig0026227:20185-20204 | Msa1427870:intron | 40.0% | |
| !! | TCATATGAAAGTGCTGCATC+CGG | + | tig0026227:20298-20317 | None:intergenic | 40.0% |
| TTCAGGAACAGAGACAACTA+AGG | - | tig0026227:20324-20343 | Msa1427870:intron | 40.0% | |
| GGAGTGGAATTGCTGAAAAA+CGG | - | tig0026227:20610-20629 | Msa1427870:CDS | 40.0% | |
| AGATGCAATTACTCACTTCG+AGG | - | tig0026227:20732-20751 | Msa1427870:intron | 40.0% | |
| ATTTAACGGCGGCGAGTATA+CGG | + | tig0026227:13492-13511 | None:intergenic | 45.0% | |
| ! | ATAATCGCATGTGTCGGTGT+CGG | + | tig0026227:13966-13985 | None:intergenic | 45.0% |
| TTACGGATGTCCACATGTCA+AGG | - | tig0026227:14013-14032 | Msa1427870:CDS | 45.0% | |
| GTGCATGCACAAATTCGGAA+AGG | + | tig0026227:14475-14494 | None:intergenic | 45.0% | |
| GAATTTGTGCATGCACGTGT+AGG | - | tig0026227:14479-14498 | Msa1427870:CDS | 45.0% | |
| TGATGCACACTCATCCAAGA+TGG | - | tig0026227:14506-14525 | Msa1427870:intron | 45.0% | |
| CCAAATTCCACTACGCAAGA+CGG | + | tig0026227:14976-14995 | None:intergenic | 45.0% | |
| ATAGGTCGAGCTTGCAGTTA+AGG | + | tig0026227:15133-15152 | None:intergenic | 45.0% | |
| TAACTGCAAGCTCGACCTAT+TGG | - | tig0026227:15133-15152 | Msa1427870:CDS | 45.0% | |
| AACTGCAAGCTCGACCTATT+GGG | - | tig0026227:15134-15153 | Msa1427870:CDS | 45.0% | |
| AACTCTCACTCTTGGAGTCA+AGG | - | tig0026227:15260-15279 | Msa1427870:CDS | 45.0% | |
| GAGATTCTTCTGTCGACAAC+AGG | + | tig0026227:15418-15437 | None:intergenic | 45.0% | |
| GTTGTCGACAGAAGAATCTC+AGG | - | tig0026227:15418-15437 | Msa1427870:CDS | 45.0% | |
| ! | ACACAGCTCTGCATTTTACC+AGG | - | tig0026227:15448-15467 | Msa1427870:CDS | 45.0% |
| ! | AGCTCTGCATTTTACCAGGT+AGG | - | tig0026227:15452-15471 | Msa1427870:CDS | 45.0% |
| GATAATCACACCTTGTGGTG+TGG | - | tig0026227:15649-15668 | Msa1427870:CDS | 45.0% | |
| TGCTAGAAGACACCCTTTGA+AGG | + | tig0026227:15689-15708 | None:intergenic | 45.0% | |
| AGCGTGCAAACTCAGAGAAA+AGG | - | tig0026227:16166-16185 | Msa1427870:CDS | 45.0% | |
| GCGTGCAAACTCAGAGAAAA+GGG | - | tig0026227:16167-16186 | Msa1427870:CDS | 45.0% | |
| GCGTTTAAGTGAGTGAAGGT+TGG | + | tig0026227:16267-16286 | None:intergenic | 45.0% | |
| TTGCACAGCATAACCAAGGA+AGG | + | tig0026227:16589-16608 | None:intergenic | 45.0% | |
| TCAGGAATCTGCGTGTTTGT+TGG | - | tig0026227:17160-17179 | Msa1427870:intron | 45.0% | |
| CAGGAATCTGCGTGTTTGTT+GGG | - | tig0026227:17161-17180 | Msa1427870:intron | 45.0% | |
| TCAGTCATGTATCCACAGAC+AGG | + | tig0026227:17595-17614 | None:intergenic | 45.0% | |
| TCTGTGGATACATGACTGAG+TGG | - | tig0026227:17596-17615 | Msa1427870:intron | 45.0% | |
| ! | TTTGAGACTTGTGGTCTTCC+GGG | - | tig0026227:17694-17713 | Msa1427870:intron | 45.0% |
| TCAAGGACTACATTGGAACC+CGG | + | tig0026227:17715-17734 | None:intergenic | 45.0% | |
| GATATTAAAGGCCGCACACA+CGG | - | tig0026227:17934-17953 | Msa1427870:intron | 45.0% | |
| AACATCAATGACCGTGTGTG+CGG | + | tig0026227:17948-17967 | None:intergenic | 45.0% | |
| GGTGTTCTTGCTTCGAATGA+TGG | - | tig0026227:18109-18128 | Msa1427870:intron | 45.0% | |
| GTTCTTGCTTCGAATGATGG+TGG | - | tig0026227:18112-18131 | Msa1427870:intron | 45.0% | |
| CTTTGCTTCAAATTGGTGGG+GGG | - | tig0026227:18179-18198 | Msa1427870:intron | 45.0% | |
| AGCAGCACATTTCAAAGGCT+CGG | + | tig0026227:18260-18279 | None:intergenic | 45.0% | |
| ACCTCAGCAGCACATTTCAA+AGG | + | tig0026227:18265-18284 | None:intergenic | 45.0% | |
| ! | TGAAATGTGCTGCTGAGGTT+TGG | - | tig0026227:18266-18285 | Msa1427870:intron | 45.0% |
| TACACTGTGTAGGTCTGATG+AGG | + | tig0026227:18394-18413 | None:intergenic | 45.0% | |
| ATCAGACCTACACAGTGTAC+AGG | - | tig0026227:18395-18414 | Msa1427870:intron | 45.0% | |
| TCAGACCTACACAGTGTACA+GGG | - | tig0026227:18396-18415 | Msa1427870:intron | 45.0% | |
| GCTATTGGAGGAAACAACCT+TGG | - | tig0026227:18510-18529 | Msa1427870:intron | 45.0% | |
| GGAGGAAACAACCTTGGATT+TGG | - | tig0026227:18516-18535 | Msa1427870:intron | 45.0% | |
| !! | AGAAGCTTGAGGTAGTGGAA+TGG | - | tig0026227:18578-18597 | Msa1427870:intron | 45.0% |
| ! | CTTCCATCATTATCTGGCTC+TGG | - | tig0026227:18874-18893 | Msa1427870:intron | 45.0% |
| ! | CTCTGGAAAAACAGCTGAAC+TGG | - | tig0026227:18891-18910 | Msa1427870:intron | 45.0% |
| GAAAAACAGCTGAACTGGTG+TGG | - | tig0026227:18896-18915 | Msa1427870:CDS | 45.0% | |
| TCTCTTCAAGTACAGCTTGG+AGG | - | tig0026227:18971-18990 | Msa1427870:intron | 45.0% | |
| CTCTTCAAGTACAGCTTGGA+GGG | - | tig0026227:18972-18991 | Msa1427870:intron | 45.0% | |
| TGGAGATTGTGATGCAATGC+TGG | - | tig0026227:19046-19065 | Msa1427870:intron | 45.0% | |
| GGGAACACTATTCGTAAGGT+TGG | + | tig0026227:19819-19838 | None:intergenic | 45.0% | |
| GACTACCTGAGATTGATGCA+AGG | - | tig0026227:19858-19877 | Msa1427870:intron | 45.0% | |
| ! | GACCATTCTCTTCGGCTTTT+TGG | - | tig0026227:19944-19963 | Msa1427870:intron | 45.0% |
| CACCAAAAAGCCGAAGAGAA+TGG | + | tig0026227:19949-19968 | None:intergenic | 45.0% | |
| ATGCAAAAAGTCGTGCTGCA+TGG | - | tig0026227:20155-20174 | Msa1427870:intron | 45.0% | |
| TGCAAAAAGTCGTGCTGCAT+GGG | - | tig0026227:20156-20175 | Msa1427870:intron | 45.0% | |
| !! | ACACAACTTGCTGTCAGCTA+TGG | - | tig0026227:20260-20279 | Msa1427870:intron | 45.0% |
| GCTATGGAGATTTCTTCCAC+CGG | - | tig0026227:20276-20295 | Msa1427870:intron | 45.0% | |
| GTCAATGCTGAAAGGAGAGA+TGG | - | tig0026227:20481-20500 | Msa1427870:intron | 45.0% | |
| CTTCCAGCAGGAATTAGCAA+AGG | - | tig0026227:20589-20608 | Msa1427870:intron | 45.0% | |
| ACTCCTTTGCTAATTCCTGC+TGG | + | tig0026227:20595-20614 | None:intergenic | 45.0% | |
| AGCAGGAATTAGCAAAGGAG+TGG | - | tig0026227:20594-20613 | Msa1427870:intron | 45.0% | |
| ! | CCTCGCAAATTGCTCTGAAT+AGG | + | tig0026227:20790-20809 | None:intergenic | 45.0% |
| CCTATTCAGAGCAATTTGCG+AGG | - | tig0026227:20787-20806 | Msa1427870:intron | 45.0% | |
| !! | TACAAAAAATAAAAATAATA+GGG | + | tig0026227:15968-15987 | None:intergenic | 5.0% |
| !! | ATACAAAAAATAAAAATAAT+AGG | + | tig0026227:15969-15988 | None:intergenic | 5.0% |
| GGCGAGTATACGGTGGATAT+CGG | + | tig0026227:13482-13501 | None:intergenic | 50.0% | |
| GAAATGGAAGTAGCTCGCCT+CGG | + | tig0026227:13518-13537 | None:intergenic | 50.0% | |
| CTCGCTGCTTAGTCAACTTG+TGG | - | tig0026227:13905-13924 | Msa1427870:CDS | 50.0% | |
| ! | TTCTGAGCAAAAGCGTGTCC+CGG | - | tig0026227:13937-13956 | Msa1427870:CDS | 50.0% |
| ATCTCACAGCTCGACCATCT+TGG | + | tig0026227:14523-14542 | None:intergenic | 50.0% | |
| ATCAGGGCTCAGGCTTAGAA+TGG | - | tig0026227:14769-14788 | Msa1427870:intron | 50.0% | |
| AAACGGCTCTGTAGCACTCT+TGG | - | tig0026227:14854-14873 | Msa1427870:intron | 50.0% | |
| ! | CCGTCTTGCGTAGTGGAATT+TGG | - | tig0026227:14973-14992 | Msa1427870:CDS | 50.0% |
| AACATTCCAGCCAGCTCACT+GGG | - | tig0026227:16607-16626 | Msa1427870:intron | 50.0% | |
| TGATCATCAACCCAGTGAGC+TGG | + | tig0026227:16620-16639 | None:intergenic | 50.0% | |
| GTGGATACATGACTGAGTGG+AGG | - | tig0026227:17599-17618 | Msa1427870:intron | 50.0% | |
| !! | GCCTTTGAAATGTGCTGCTG+AGG | - | tig0026227:18261-18280 | Msa1427870:intron | 50.0% |
| GATCTCCCTGTACACTGTGT+AGG | + | tig0026227:18404-18423 | None:intergenic | 50.0% | |
| !! | AGCAGTGATAGCGGAGCTAT+TGG | - | tig0026227:18495-18514 | Msa1427870:intron | 50.0% |
| !! | AGTGATAGCGGAGCTATTGG+AGG | - | tig0026227:18498-18517 | Msa1427870:intron | 50.0% |
| GGAACAGAAGCTTGAGGTAG+TGG | - | tig0026227:18573-18592 | Msa1427870:intron | 50.0% | |
| AGGAAGGAAAACTGAGTCGG+AGG | + | tig0026227:19154-19173 | None:intergenic | 50.0% | |
| TGGAATGCCAAACAAACCGG+AGG | + | tig0026227:19439-19458 | None:intergenic | 50.0% | |
| ATGGCCCTTGCATCAATCTC+AGG | + | tig0026227:19866-19885 | None:intergenic | 50.0% | |
| GTGAGGAACTGAGCCAAATG+TGG | + | tig0026227:20094-20113 | None:intergenic | 50.0% | |
| ! | CATTTGGCTCAGTTCCTCAC+TGG | - | tig0026227:20094-20113 | Msa1427870:intron | 50.0% |
| CCATGTGAACAAGTCCAGTG+AGG | + | tig0026227:20111-20130 | None:intergenic | 50.0% | |
| ! | CCTCACTGGACTTGTTCACA+TGG | - | tig0026227:20108-20127 | Msa1427870:intron | 50.0% |
| !! | TATGAAAGTGCTGCATCCGG+TGG | + | tig0026227:20295-20314 | None:intergenic | 50.0% |
| AGCTCAAGCTGTTCAGGACT+TGG | + | tig0026227:20412-20431 | None:intergenic | 50.0% | |
| GAGAGATGGATGTGAGAGCA+TGG | - | tig0026227:20495-20514 | Msa1427870:intron | 50.0% | |
| !! | TTGGTGACGGTCTTTCAGAG+TGG | - | tig0026227:20644-20663 | Msa1427870:CDS | 50.0% |
| ACTCACTTCGAGGAATTGGC+TGG | - | tig0026227:20742-20761 | Msa1427870:intron | 50.0% | |
| CTCACTTCGAGGAATTGGCT+GGG | - | tig0026227:20743-20762 | Msa1427870:intron | 50.0% | |
| TATACGGTGGATATCGGCGC+CGG | + | tig0026227:13476-13495 | None:intergenic | 55.0% | |
| GCTCGCCTCGGAGGATTTAA+CGG | + | tig0026227:13506-13525 | None:intergenic | 55.0% | |
| GATGGTTGTCATCAGGGCTC+AGG | - | tig0026227:14759-14778 | Msa1427870:intron | 55.0% | |
| GCAAGACGGCAACAGTGTCA+TGG | + | tig0026227:14962-14981 | None:intergenic | 55.0% | |
| ACTGTTGCCGTCTTGCGTAG+TGG | - | tig0026227:14966-14985 | Msa1427870:CDS | 55.0% | |
| GGTCGAGCTTGCAGTTAAGG+TGG | + | tig0026227:15130-15149 | None:intergenic | 55.0% | |
| GCTGACGTGCATTACGACCA+TGG | + | tig0026227:16466-16485 | None:intergenic | 55.0% | |
| TGTCGGTGAGTCTCCTTCCT+TGG | - | tig0026227:16573-16592 | Msa1427870:intron | 55.0% | |
| CAACATTCCAGCCAGCTCAC+TGG | - | tig0026227:16606-16625 | Msa1427870:intron | 55.0% | |
| TCATTGACGGCATGCTCCTC+CGG | - | tig0026227:19420-19439 | Msa1427870:intron | 55.0% | |
| ! | GCATGCTCCTCCGGTTTGTT+TGG | - | tig0026227:19429-19448 | Msa1427870:intron | 55.0% |
| TGATCTTGACAGAGCGGCAC+TGG | - | tig0026227:20191-20210 | Msa1427870:intron | 55.0% | |
| GATCTTGACAGAGCGGCACT+GGG | - | tig0026227:20192-20211 | Msa1427870:intron | 55.0% | |
| CGTAGCAGCTCAAGCTGTTC+AGG | + | tig0026227:20418-20437 | None:intergenic | 55.0% | |
| CTTGAGCTGCTACGACGAGA+AGG | - | tig0026227:20424-20443 | Msa1427870:intron | 55.0% | |
| TTCGAGGAATTGGCTGGGAG+TGG | - | tig0026227:20748-20767 | Msa1427870:intron | 55.0% | |
| TAACGGCGGCGAGTATACGG+TGG | + | tig0026227:13489-13508 | None:intergenic | 60.0% | |
| CGCCTCGGAGGATTTAACGG+CGG | + | tig0026227:13503-13522 | None:intergenic | 60.0% | |
| ATGGAAGTAGCTCGCCTCGG+AGG | + | tig0026227:13515-13534 | None:intergenic | 60.0% | |
| !! | ATGTGTCGGTGTCGGACACC+GGG | + | tig0026227:13958-13977 | None:intergenic | 60.0% |
| !! | CATGTGTCGGTGTCGGACAC+CGG | + | tig0026227:13959-13978 | None:intergenic | 60.0% |
| CATCAACCCAGTGAGCTGGC+TGG | + | tig0026227:16616-16635 | None:intergenic | 60.0% | |
| CGCCGCCGTTAAATCCTCCG+AGG | - | tig0026227:13498-13517 | Msa1427870:three_prime_UTR | 65.0% | |
| GGAATTGGCTGGGAGTGGCG+AGG | - | tig0026227:20753-20772 | Msa1427870:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026227 | gene | 13457 | 20908 | 13457 | ID=Msa1427870;Name=Msa1427870 |
| tig0026227 | mRNA | 13457 | 20908 | 13457 | ID=Msa1427870-mRNA-1;Parent=Msa1427870;Name=Msa1427870-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.25|0.11|0.77|1|1|9|95|1096 |
| tig0026227 | exon | 13457 | 14515 | 13457 | ID=Msa1427870-mRNA-1:exon:5701;Parent=Msa1427870-mRNA-1 |
| tig0026227 | exon | 14863 | 16454 | 14863 | ID=Msa1427870-mRNA-1:exon:5700;Parent=Msa1427870-mRNA-1 |
| tig0026227 | exon | 16971 | 17120 | 16971 | ID=Msa1427870-mRNA-1:exon:5699;Parent=Msa1427870-mRNA-1 |
| tig0026227 | exon | 17737 | 17820 | 17737 | ID=Msa1427870-mRNA-1:exon:5698;Parent=Msa1427870-mRNA-1 |
| tig0026227 | exon | 18896 | 18985 | 18896 | ID=Msa1427870-mRNA-1:exon:5697;Parent=Msa1427870-mRNA-1 |
| tig0026227 | exon | 19084 | 19267 | 19084 | ID=Msa1427870-mRNA-1:exon:5696;Parent=Msa1427870-mRNA-1 |
| tig0026227 | exon | 19830 | 19864 | 19830 | ID=Msa1427870-mRNA-1:exon:5695;Parent=Msa1427870-mRNA-1 |
| tig0026227 | exon | 20596 | 20724 | 20596 | ID=Msa1427870-mRNA-1:exon:5694;Parent=Msa1427870-mRNA-1 |
| tig0026227 | exon | 20846 | 20908 | 20846 | ID=Msa1427870-mRNA-1:exon:5693;Parent=Msa1427870-mRNA-1 |
| tig0026227 | CDS | 20846 | 20908 | 20846 | ID=Msa1427870-mRNA-1:cds;Parent=Msa1427870-mRNA-1 |
| tig0026227 | CDS | 20596 | 20724 | 20596 | ID=Msa1427870-mRNA-1:cds;Parent=Msa1427870-mRNA-1 |
| tig0026227 | CDS | 19830 | 19864 | 19830 | ID=Msa1427870-mRNA-1:cds;Parent=Msa1427870-mRNA-1 |
| tig0026227 | CDS | 19084 | 19267 | 19084 | ID=Msa1427870-mRNA-1:cds;Parent=Msa1427870-mRNA-1 |
| tig0026227 | CDS | 18896 | 18985 | 18896 | ID=Msa1427870-mRNA-1:cds;Parent=Msa1427870-mRNA-1 |
| tig0026227 | CDS | 17737 | 17820 | 17737 | ID=Msa1427870-mRNA-1:cds;Parent=Msa1427870-mRNA-1 |
| tig0026227 | CDS | 16971 | 17120 | 16971 | ID=Msa1427870-mRNA-1:cds;Parent=Msa1427870-mRNA-1 |
| tig0026227 | CDS | 14863 | 16454 | 14863 | ID=Msa1427870-mRNA-1:cds;Parent=Msa1427870-mRNA-1 |
| tig0026227 | CDS | 13552 | 14515 | 13552 | ID=Msa1427870-mRNA-1:cds;Parent=Msa1427870-mRNA-1 |
| tig0026227 | three_prime_UTR | 13457 | 13551 | 13457 | ID=Msa1427870-mRNA-1:three_prime_utr;Parent=Msa1427870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
