Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412420 | A0A396JSC8 | 92.062 | 1096 | 25 | 2 | 1 | 1096 | 1 | 1034 | 0.0 | 2021 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037710 | Msa1412420 | 0.819855 | 9.325781e-53 | -8.615850e-47 |
| Msa1412420 | Msa1427870 | 0.990029 | 9.807091e-181 | -8.615850e-47 |
| Msa0129630 | Msa1412420 | 0.948553 | 7.509325e-107 | -8.615850e-47 |
| Msa1331300 | Msa1412420 | 0.813745 | 2.191370e-51 | -8.615850e-47 |
| Msa0414880 | Msa1412420 | 0.819930 | 8.964595e-53 | -8.615850e-47 |
| Msa1074900 | Msa1412420 | 0.806554 | 7.773355e-50 | -8.615850e-47 |
| Msa1078830 | Msa1412420 | 0.818999 | 1.462199e-52 | -8.615850e-47 |
| Msa1169660 | Msa1412420 | 0.815996 | 6.941134e-52 | -8.615850e-47 |
| Msa1207330 | Msa1412420 | 0.808391 | 3.169094e-50 | -8.615850e-47 |
| Msa0502510 | Msa1412420 | 0.810097 | 1.365445e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412420 | MtrunA17_Chr1g0196651 | 92.062 | 1096 | 25 | 2 | 1 | 1096 | 1 | 1034 | 0.0 | 2021 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412420 | AT1G04650.1 | 38.873 | 1083 | 560 | 10 | 12 | 1084 | 7 | 997 | 0.0 | 708 |
| Msa1412420 | AT1G04650.2 | 41.046 | 899 | 496 | 9 | 196 | 1084 | 21 | 895 | 0.0 | 654 |
Find 184 sgRNAs with CRISPR-Local
Find 2 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCCTCATTCTTCTTTC+AGG | 0.081998 | tig0023896:-39373 | Msa1412420:CDS |
| CAAGCTTGAGAGAATATTTA+AGG | 0.158566 | tig0023896:+39783 | None:intergenic |
| TTCTCACTATCACTTCATTT+TGG | 0.164804 | tig0023896:-40105 | Msa1412420:CDS |
| CGACTTCCATGCTATTTAAT+TGG | 0.194433 | tig0023896:+38005 | None:intergenic |
| GTTAATGAAGATTCTCATTC+TGG | 0.243809 | tig0023896:-39932 | Msa1412420:CDS |
| TTATGTTCTGCAGCTTCTTT+TGG | 0.246930 | tig0023896:-41307 | Msa1412420:intron |
| TCTAGTGATCATTTCATATC+TGG | 0.247729 | tig0023896:-38566 | Msa1412420:CDS |
| CGATTACTCAGAAGCTTAAT+TGG | 0.262276 | tig0023896:-39742 | Msa1412420:CDS |
| TCATCCTCACTTCCTTTGTT+TGG | 0.264775 | tig0023896:-39513 | Msa1412420:CDS |
| CAGCATTGACTGAAATGTTA+TGG | 0.283833 | tig0023896:+38071 | None:intergenic |
| TTGCAACTTCCATCATTATC+TGG | 0.286370 | tig0023896:-39671 | Msa1412420:CDS |
| CAATTCCTTGTTACTAATAT+CGG | 0.290844 | tig0023896:+41236 | None:intergenic |
| TTGGGAAACTTTCACATGTT+TGG | 0.293444 | tig0023896:-43390 | Msa1412420:CDS |
| CTTTCATATGATATAATTTC+AGG | 0.293788 | tig0023896:-38232 | Msa1412420:CDS |
| CATTTAGCATTAACTGCATT+TGG | 0.306514 | tig0023896:-38316 | Msa1412420:CDS |
| AATATCTGATAAACTAAAAC+TGG | 0.307618 | tig0023896:-39987 | Msa1412420:CDS |
| AAGCAGAAAATTCAATCATT+TGG | 0.307925 | tig0023896:-40634 | Msa1412420:intron |
| CGTAGCAGCTCAAGCTGTTC+AGG | 0.310698 | tig0023896:+38124 | None:intergenic |
| TGCGTTCTGAATTAATAAAC+TGG | 0.317909 | tig0023896:-40552 | Msa1412420:CDS |
| GGAGGAAACAACCTTGGATT+TGG | 0.320498 | tig0023896:-40023 | Msa1412420:CDS |
| GTTGTTTCTTTGCTTCAAAT+TGG | 0.328294 | tig0023896:-40367 | Msa1412420:CDS |
| TTTCTGTAACTGAAGCTAAA+AGG | 0.334035 | tig0023896:-40228 | Msa1412420:CDS |
| AAGCTGATGCTGAAAATCTT+AGG | 0.334216 | tig0023896:+41280 | None:intergenic |
| TAACTGCAAGCTCGACCTAT+TGG | 0.334725 | tig0023896:-43409 | Msa1412420:CDS |
| ATTTGGATCAGAGATATTAA+AGG | 0.341131 | tig0023896:-40617 | Msa1412420:CDS |
| AATTACTCACTTCGAGGAAT+TGG | 0.343356 | tig0023896:-37801 | Msa1412420:CDS |
| GCATGCTCCTCCGGTTTGTT+TGG | 0.344036 | tig0023896:-39110 | Msa1412420:CDS |
| CAAAGAAACAACACCTTTCC+AGG | 0.352316 | tig0023896:+40378 | None:intergenic |
| GTACAAATGCAAACCACATT+TGG | 0.371106 | tig0023896:-38461 | Msa1412420:CDS |
| TTTCTTTGCTTCAAATTGGT+GGG | 0.374180 | tig0023896:-40363 | Msa1412420:CDS |
| ATAGAAAAGCTGTCTCAAAT+TGG | 0.376969 | tig0023896:-40451 | Msa1412420:CDS |
| GAGATTCTTCTGTCGACAAC+AGG | 0.378557 | tig0023896:+43127 | None:intergenic |
| TACTGTTGACAAAGAAATAA+AGG | 0.379756 | tig0023896:-38617 | Msa1412420:CDS |
| ATTTAACGGCGGCGAGTATA+CGG | 0.383964 | tig0023896:+45053 | None:intergenic |
| GTTCAATTATTCACCGATCT+AGG | 0.386018 | tig0023896:-44886 | Msa1412420:CDS |
| GTGGTTTGCATTTGTACAAA+AGG | 0.397409 | tig0023896:+38467 | None:intergenic |
| AACTGCAAGCTCGACCTATT+GGG | 0.397950 | tig0023896:-43408 | Msa1412420:CDS |
| AGCAGTGATAGCGGAGCTAT+TGG | 0.398983 | tig0023896:-40044 | Msa1412420:CDS |
| TTGTTAATTAGGCTAGTATA+TGG | 0.402043 | tig0023896:-43173 | Msa1412420:intron |
| TGAAATGTGCTGCTGAGGTT+TGG | 0.402761 | tig0023896:-40273 | Msa1412420:CDS |
| TGATCTTGACAGAGCGGCAC+TGG | 0.406282 | tig0023896:-38348 | Msa1412420:CDS |
| ATAGGTCGAGCTTGCAGTTA+AGG | 0.406436 | tig0023896:+43412 | None:intergenic |
| TCATTGACGGCATGCTCCTC+CGG | 0.409903 | tig0023896:-39119 | Msa1412420:CDS |
| TACTTCTGTTTAGCATGCAT+TGG | 0.409935 | tig0023896:+43360 | None:intergenic |
| AGCTCAAGCTGTTCAGGACT+TGG | 0.411704 | tig0023896:+38130 | None:intergenic |
| TGTTTGGCTCTGTTCATTGA+AGG | 0.412535 | tig0023896:-39239 | Msa1412420:CDS |
| ATACTTGACATGCAGTTCAT+TGG | 0.417288 | tig0023896:+37853 | None:intergenic |
| TCAATATTCTTAGTATCTCC+TGG | 0.423343 | tig0023896:-40396 | Msa1412420:CDS |
| CTTTAATGAAGCTTCATTGA+CGG | 0.432701 | tig0023896:-39132 | Msa1412420:CDS |
| ATAGCATGGACAACATGAAT+AGG | 0.438166 | tig0023896:+40493 | None:intergenic |
| TATTAGTAACAAGGAATTGA+TGG | 0.445950 | tig0023896:-41232 | Msa1412420:CDS |
| GGAACAGAAGCTTGAGGTAG+TGG | 0.446616 | tig0023896:-39966 | Msa1412420:CDS |
| TTCTTTGCTTCAAATTGGTG+GGG | 0.449517 | tig0023896:-40362 | Msa1412420:CDS |
| TGTCGGTGAGTCTCCTTCCT+TGG | 0.455419 | tig0023896:-41966 | Msa1412420:CDS |
| ACTTCTGTTTAGCATGCATT+GGG | 0.455549 | tig0023896:+43361 | None:intergenic |
| CCTCGCAAATTGCTCTGAAT+AGG | 0.459283 | tig0023896:+37752 | None:intergenic |
| ATGGCCCTTGCATCAATCTC+AGG | 0.459700 | tig0023896:+38676 | None:intergenic |
| ATGTTCATTACTTAAGCTGT+TGG | 0.460578 | tig0023896:-39414 | Msa1412420:CDS |
| ACATGTGAAAGTTTCCCAAT+AGG | 0.460912 | tig0023896:+43394 | None:intergenic |
| ACTCCTTTGCTAATTCCTGC+TGG | 0.462429 | tig0023896:+37947 | None:intergenic |
| GGTGTTCTTGCTTCGAATGA+TGG | 0.465585 | tig0023896:-40430 | Msa1412420:CDS |
| ACTCACTTCGAGGAATTGGC+TGG | 0.466064 | tig0023896:-37797 | Msa1412420:CDS |
| TGTTCATTACTTAAGCTGTT+GGG | 0.467901 | tig0023896:-39413 | Msa1412420:CDS |
| CTTCCATCATTATCTGGCTC+TGG | 0.468283 | tig0023896:-39665 | Msa1412420:CDS |
| GAGAGATGGATGTGAGAGCA+TGG | 0.468330 | tig0023896:-38044 | Msa1412420:CDS |
| GTTTCTTTGCTTCAAATTGG+TGG | 0.468414 | tig0023896:-40364 | Msa1412420:CDS |
| CAAGCTTAAATTTCCTAGAT+CGG | 0.468630 | tig0023896:+44873 | None:intergenic |
| CGATCAAGAGTACTAATACT+TGG | 0.468752 | tig0023896:-39830 | Msa1412420:CDS |
| TCTTTGCTTCAAATTGGTGG+GGG | 0.472659 | tig0023896:-40361 | Msa1412420:CDS |
| GCAATATGCTGAAACACAAA+TGG | 0.474449 | tig0023896:-39459 | Msa1412420:CDS |
| AACTGGAATGCCAAACAAAC+CGG | 0.477551 | tig0023896:+39100 | None:intergenic |
| GAAGAAGATGAAGTGAAGAA+AGG | 0.478004 | tig0023896:+44798 | None:intergenic |
| TGGAGATTGTGATGCAATGC+TGG | 0.478103 | tig0023896:-39493 | Msa1412420:CDS |
| GCTCGCCTCGGAGGATTTAA+CGG | 0.480743 | tig0023896:+45039 | None:intergenic |
| CAACATTCCAGCCAGCTCAC+TGG | 0.482695 | tig0023896:-41933 | Msa1412420:CDS |
| CAAATCGAATGATATTGAAC+AGG | 0.484736 | tig0023896:-38533 | Msa1412420:CDS |
| TTACTGCAAACTCTCACTCT+TGG | 0.489075 | tig0023896:-43290 | Msa1412420:CDS |
| TTGCATTTGTACAAAAGGAC+TGG | 0.493090 | tig0023896:+38472 | None:intergenic |
| ATCTCACAGCTCGACCATCT+TGG | 0.494070 | tig0023896:+44022 | None:intergenic |
| GGCGAGTATACGGTGGATAT+CGG | 0.496864 | tig0023896:+45063 | None:intergenic |
| ACTATAAAACAAACATCAAA+GGG | 0.498557 | tig0023896:+37722 | None:intergenic |
| AACATTCCAGCCAGCTCACT+GGG | 0.503043 | tig0023896:-41932 | Msa1412420:intron |
| TACTATAAAACAAACATCAA+AGG | 0.505082 | tig0023896:+37721 | None:intergenic |
| AAATAAAGGACCATTCTCTT+CGG | 0.505358 | tig0023896:-38603 | Msa1412420:CDS |
| CTCTTCAAGTACAGCTTGGA+GGG | 0.511034 | tig0023896:-39567 | Msa1412420:CDS |
| GAGGTGTTTATGTCAATTGT+TGG | 0.511061 | tig0023896:-39293 | Msa1412420:CDS |
| TTCGAGGAATTGGCTGGGAG+TGG | 0.511953 | tig0023896:-37791 | Msa1412420:CDS |
| ATCAGACCTACACAGTGTAC+AGG | 0.514130 | tig0023896:-40144 | Msa1412420:CDS |
| CAGCTAATGTTGGACAATCA+AGG | 0.514656 | tig0023896:+39909 | None:intergenic |
| CAGACTGAGATGATCATCAA+TGG | 0.516467 | tig0023896:+41987 | None:intergenic |
| CTTTGCTTCAAATTGGTGGG+GGG | 0.516713 | tig0023896:-40360 | Msa1412420:CDS |
| TGATCTCTTCAAGTACAGCT+TGG | 0.518395 | tig0023896:-39571 | Msa1412420:CDS |
| TTGATCAGGTAAAATTTCAC+TGG | 0.518498 | tig0023896:+40196 | None:intergenic |
| CATTTGGCTCAGTTCCTCAC+TGG | 0.520913 | tig0023896:-38445 | Msa1412420:CDS |
| AAAGAAGTTCTCTAGTAAGA+AGG | 0.520959 | tig0023896:+39535 | None:intergenic |
| TTTGCAGTAAACAGCTAGGT+AGG | 0.522639 | tig0023896:+43303 | None:intergenic |
| GTTGTCGACAGAAGAATCTC+AGG | 0.522837 | tig0023896:-43124 | Msa1412420:CDS |
| CATCAACCCAGTGAGCTGGC+TGG | 0.523998 | tig0023896:+41926 | None:intergenic |
| TTTCCAGAGCCAGATAATGA+TGG | 0.524410 | tig0023896:+39662 | None:intergenic |
| AGTGAATATAGCAAATATAG+TGG | 0.524490 | tig0023896:-40326 | Msa1412420:CDS |
| ATTCATGACGGAAGCATGAT+CGG | 0.524988 | tig0023896:+44834 | None:intergenic |
| GCCTTTGAAATGTGCTGCTG+AGG | 0.526380 | tig0023896:-40278 | Msa1412420:CDS |
| ACACAACTTGCTGTCAGCTA+TGG | 0.527197 | tig0023896:-38279 | Msa1412420:CDS |
| AACTCTCACTCTTGGAGTCA+AGG | 0.528872 | tig0023896:-43282 | Msa1412420:intron |
| GCTAAACAGAAGTATTCTAC+AGG | 0.531874 | tig0023896:-43351 | Msa1412420:CDS |
| TCATATGAAAGTGCTGCATC+CGG | 0.537804 | tig0023896:+38244 | None:intergenic |
| GTTTGGCTCTGTTCATTGAA+GGG | 0.538387 | tig0023896:-39238 | Msa1412420:CDS |
| TGATCATCAACCCAGTGAGC+TGG | 0.538682 | tig0023896:+41922 | None:intergenic |
| AGCTGCTTGTAACTTTACAT+TGG | 0.538952 | tig0023896:-39891 | Msa1412420:CDS |
| AATTAGGCTAGTATATGGTC+TGG | 0.540868 | tig0023896:-43168 | Msa1412420:intron |
| CAAGAACCAATTAAATAGCA+TGG | 0.544781 | tig0023896:-38011 | Msa1412420:CDS |
| ATTTGGTTATGTTGATAGCA+TGG | 0.545431 | tig0023896:+40479 | None:intergenic |
| TCTCTTCAAGTACAGCTTGG+AGG | 0.545970 | tig0023896:-39568 | Msa1412420:CDS |
| GCTATTGGAGGAAACAACCT+TGG | 0.546923 | tig0023896:-40029 | Msa1412420:CDS |
| GTCAATGCTGAAAGGAGAGA+TGG | 0.547419 | tig0023896:-38058 | Msa1412420:CDS |
| CAAGTATTAGTACTCTTGAT+CGG | 0.548577 | tig0023896:+39831 | None:intergenic |
| TGAAGAGATCACAATCATGA+AGG | 0.554036 | tig0023896:+39583 | None:intergenic |
| TTATGTCAATTGTTGGTGAT+CGG | 0.555097 | tig0023896:-39286 | Msa1412420:CDS |
| AGATGCAATTACTCACTTCG+AGG | 0.557847 | tig0023896:-37807 | Msa1412420:CDS |
| AGCAGCACATTTCAAAGGCT+CGG | 0.559189 | tig0023896:+40282 | None:intergenic |
| AGTGATAGCGGAGCTATTGG+AGG | 0.566440 | tig0023896:-40041 | Msa1412420:CDS |
| GATCTTGACAGAGCGGCACT+GGG | 0.570474 | tig0023896:-38347 | Msa1412420:CDS |
| AGAGTTTGCAGTAAACAGCT+AGG | 0.572784 | tig0023896:+43299 | None:intergenic |
| CTTGAGCTGCTACGACGAGA+AGG | 0.578244 | tig0023896:-38115 | Msa1412420:CDS |
| TTCAGGAACAGAGACAACTA+AGG | 0.578649 | tig0023896:-38215 | Msa1412420:CDS |
| TCCTGAAAGAAGAATGAGGA+AGG | 0.578946 | tig0023896:+39372 | None:intergenic |
| AAGTTACAAGCAGCTAATGT+TGG | 0.581575 | tig0023896:+39899 | None:intergenic |
| ATTCTTAGTATCTCCTGGAA+AGG | 0.582974 | tig0023896:-40391 | Msa1412420:CDS |
| AAAATGGCGGAAGGAAACTC+CGG | 0.586569 | tig0023896:-45088 | Msa1412420:CDS |
| CATTTGTACAAAAGGACTGG+AGG | 0.590917 | tig0023896:+38475 | None:intergenic |
| AACATCAATGACCGTGTGTG+CGG | 0.598742 | tig0023896:+40594 | None:intergenic |
| GGTCGAGCTTGCAGTTAAGG+TGG | 0.598914 | tig0023896:+43415 | None:intergenic |
| CTCACTTCGAGGAATTGGCT+GGG | 0.601390 | tig0023896:-37796 | Msa1412420:CDS |
| ATATTCTCTCAAGCTTGATG+AGG | 0.602071 | tig0023896:-39777 | Msa1412420:CDS |
| ACTACCTGAGATTGATGCAA+GGG | 0.602615 | tig0023896:-38680 | Msa1412420:CDS |
| AGCAGGAATTAGCAAAGGAG+TGG | 0.605019 | tig0023896:-37945 | Msa1412420:CDS |
| CCTCACTGGACTTGTTCACA+TGG | 0.605363 | tig0023896:-38431 | Msa1412420:CDS |
| TTGCACAGCATAACCAAGGA+AGG | 0.606135 | tig0023896:+41953 | None:intergenic |
| ACCTCAGCAGCACATTTCAA+AGG | 0.607870 | tig0023896:+40277 | None:intergenic |
| ATCTCCAAACAAAGGAAGTG+AGG | 0.608558 | tig0023896:+39509 | None:intergenic |
| TCAGACCTACACAGTGTACA+GGG | 0.610865 | tig0023896:-40143 | Msa1412420:CDS |
| GCTATGGAGATTTCTTCCAC+CGG | 0.617902 | tig0023896:-38263 | Msa1412420:CDS |
| TGATGATCATCTCAGTCTGT+CGG | 0.618224 | tig0023896:-41983 | Msa1412420:CDS |
| GATATTAAAGGCCGCACACA+CGG | 0.619564 | tig0023896:-40605 | Msa1412420:CDS |
| ACATTTCAGTCAATGCTGAA+AGG | 0.623736 | tig0023896:-38066 | Msa1412420:CDS |
| TGATGCACACTCATCCAAGA+TGG | 0.625184 | tig0023896:-44036 | Msa1412420:CDS |
| AGATTCTATATCTGAAGCCA+AGG | 0.626301 | tig0023896:-41166 | Msa1412420:intron |
| GACTACCTGAGATTGATGCA+AGG | 0.626991 | tig0023896:-38681 | Msa1412420:CDS |
| GATCTCCCTGTACACTGTGT+AGG | 0.630525 | tig0023896:+40138 | None:intergenic |
| CAAAGACAACACCAAATCCA+AGG | 0.631055 | tig0023896:+40012 | None:intergenic |
| TATACGGTGGATATCGGCGC+CGG | 0.632910 | tig0023896:+45069 | None:intergenic |
| GCATCACAATCTCCAAACAA+AGG | 0.634537 | tig0023896:+39501 | None:intergenic |
| GGTTTGAAGATTATTGGTGA+CGG | 0.634783 | tig0023896:-37908 | Msa1412420:CDS |
| TATGAAAGTGCTGCATCCGG+TGG | 0.636471 | tig0023896:+38247 | None:intergenic |
| AGATTCTTCTGTCGACAACA+GGG | 0.636635 | tig0023896:+43128 | None:intergenic |
| ATGAGGAAGGAAAACTGAGT+CGG | 0.636841 | tig0023896:+39385 | None:intergenic |
| AATTTCCTGAAAGAAGAATG+AGG | 0.639283 | tig0023896:+39368 | None:intergenic |
| AAATGCATCAGCAGTGATAG+CGG | 0.641985 | tig0023896:-40053 | Msa1412420:CDS |
| CTTCCAGCAGGAATTAGCAA+AGG | 0.643071 | tig0023896:-37950 | Msa1412420:CDS |
| GTGAGGAACTGAGCCAAATG+TGG | 0.646782 | tig0023896:+38448 | None:intergenic |
| TACTACAAGGCAATTCATGA+CGG | 0.647298 | tig0023896:+44822 | None:intergenic |
| AGTGAAGAAAGGATACTACA+AGG | 0.649053 | tig0023896:+44809 | None:intergenic |
| AGGAAGGAAAACTGAGTCGG+AGG | 0.649594 | tig0023896:+39388 | None:intergenic |
| ATTCACCGATATTAGTAACA+AGG | 0.649686 | tig0023896:-41241 | Msa1412420:CDS |
| AGAAGCTTGAGGTAGTGGAA+TGG | 0.649896 | tig0023896:-39961 | Msa1412420:CDS |
| GCGTTCTGAATTAATAAACT+GGG | 0.651433 | tig0023896:-40551 | Msa1412420:CDS |
| TTCACTTGATCTTGACAGAG+CGG | 0.651465 | tig0023896:-38354 | Msa1412420:CDS |
| GTTCTTGCTTCGAATGATGG+TGG | 0.656126 | tig0023896:-40427 | Msa1412420:CDS |
| GGAATTGGCTGGGAGTGGCG+AGG | 0.656699 | tig0023896:-37786 | Msa1412420:CDS |
| TACACTGTGTAGGTCTGATG+AGG | 0.659409 | tig0023896:+40148 | None:intergenic |
| TTCTGAATTAATAAACTGGG+AGG | 0.670862 | tig0023896:-40548 | Msa1412420:CDS |
| CGCCTCGGAGGATTTAACGG+CGG | 0.688230 | tig0023896:+45042 | None:intergenic |
| TGTTGTTGTAAAGCTATGCA+AGG | 0.691450 | tig0023896:-40575 | Msa1412420:CDS |
| CGCCGCCGTTAAATCCTCCG+AGG | 0.692251 | tig0023896:-45044 | Msa1412420:intron |
| ATGGAAGTAGCTCGCCTCGG+AGG | 0.692977 | tig0023896:+45030 | None:intergenic |
| AAAACTGGAACAGAAGCTTG+AGG | 0.694528 | tig0023896:-39972 | Msa1412420:CDS |
| TTGGTGACGGTCTTTCAGAG+TGG | 0.702019 | tig0023896:-37895 | Msa1412420:CDS |
| TGCAAGAGGAGAGTAAACAT+AGG | 0.703321 | tig0023896:+39617 | None:intergenic |
| CCTATTCAGAGCAATTTGCG+AGG | 0.704560 | tig0023896:-37752 | Msa1412420:CDS |
| TGGAATGCCAAACAAACCGG+AGG | 0.710686 | tig0023896:+39103 | None:intergenic |
| AATGTTGCACAGCATAACCA+AGG | 0.715536 | tig0023896:+41949 | None:intergenic |
| TAACGGCGGCGAGTATACGG+TGG | 0.718018 | tig0023896:+45056 | None:intergenic |
| CCATGTGAACAAGTCCAGTG+AGG | 0.723530 | tig0023896:+38431 | None:intergenic |
| AATATCGGTGAATTTCAACA+AGG | 0.727967 | tig0023896:+41251 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GGCGAGTATACGGTGGATAT+CGG | + | tig0023896:37678-37697 | None:intergenic | 50.0% | |
| TATACGGTGGATATCGGCGC+CGG | + | tig0023896:37672-37691 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023896 | gene | 37653 | 45107 | 37653 | ID=Msa1412420;Name=Msa1412420 |
| tig0023896 | mRNA | 37653 | 45107 | 37653 | ID=Msa1412420-mRNA-1;Parent=Msa1412420;Name=Msa1412420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.25|0.11|0.77|1|1|9|95|1096 |
| tig0023896 | exon | 37653 | 38711 | 37653 | ID=Msa1412420-mRNA-1:exon:20634;Parent=Msa1412420-mRNA-1 |
| tig0023896 | exon | 39059 | 40650 | 39059 | ID=Msa1412420-mRNA-1:exon:20633;Parent=Msa1412420-mRNA-1 |
| tig0023896 | exon | 41167 | 41316 | 41167 | ID=Msa1412420-mRNA-1:exon:20632;Parent=Msa1412420-mRNA-1 |
| tig0023896 | exon | 41933 | 42016 | 41933 | ID=Msa1412420-mRNA-1:exon:20631;Parent=Msa1412420-mRNA-1 |
| tig0023896 | exon | 43095 | 43184 | 43095 | ID=Msa1412420-mRNA-1:exon:20630;Parent=Msa1412420-mRNA-1 |
| tig0023896 | exon | 43283 | 43466 | 43283 | ID=Msa1412420-mRNA-1:exon:20629;Parent=Msa1412420-mRNA-1 |
| tig0023896 | exon | 44029 | 44063 | 44029 | ID=Msa1412420-mRNA-1:exon:20628;Parent=Msa1412420-mRNA-1 |
| tig0023896 | exon | 44795 | 44923 | 44795 | ID=Msa1412420-mRNA-1:exon:20627;Parent=Msa1412420-mRNA-1 |
| tig0023896 | exon | 45045 | 45107 | 45045 | ID=Msa1412420-mRNA-1:exon:20626;Parent=Msa1412420-mRNA-1 |
| tig0023896 | CDS | 45045 | 45107 | 45045 | ID=Msa1412420-mRNA-1:cds;Parent=Msa1412420-mRNA-1 |
| tig0023896 | CDS | 44795 | 44923 | 44795 | ID=Msa1412420-mRNA-1:cds;Parent=Msa1412420-mRNA-1 |
| tig0023896 | CDS | 44029 | 44063 | 44029 | ID=Msa1412420-mRNA-1:cds;Parent=Msa1412420-mRNA-1 |
| tig0023896 | CDS | 43283 | 43466 | 43283 | ID=Msa1412420-mRNA-1:cds;Parent=Msa1412420-mRNA-1 |
| tig0023896 | CDS | 43095 | 43184 | 43095 | ID=Msa1412420-mRNA-1:cds;Parent=Msa1412420-mRNA-1 |
| tig0023896 | CDS | 41933 | 42016 | 41933 | ID=Msa1412420-mRNA-1:cds;Parent=Msa1412420-mRNA-1 |
| tig0023896 | CDS | 41167 | 41316 | 41167 | ID=Msa1412420-mRNA-1:cds;Parent=Msa1412420-mRNA-1 |
| tig0023896 | CDS | 39059 | 40650 | 39059 | ID=Msa1412420-mRNA-1:cds;Parent=Msa1412420-mRNA-1 |
| tig0023896 | CDS | 37748 | 38711 | 37748 | ID=Msa1412420-mRNA-1:cds;Parent=Msa1412420-mRNA-1 |
| tig0023896 | three_prime_UTR | 37653 | 37747 | 37653 | ID=Msa1412420-mRNA-1:three_prime_utr;Parent=Msa1412420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
