AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578890 MtrunA17_Chr4g0043931 91.334 577 20 4 151 717 98 654 0.0 1031
Msa0578890 MtrunA17_Chr4g0043951 72.349 481 120 3 127 605 76 545 0.0 676
Msa0578890 MtrunA17_Chr2g0331951 61.939 557 195 6 151 703 103 646 0.0 676
Msa0578890 MtrunA17_Chr4g0004261 60.791 556 203 5 151 703 110 653 0.0 668
Msa0578890 MtrunA17_Chr1g0185231 53.596 584 252 7 130 708 80 649 0.0 578
Msa0578890 MtrunA17_Chr7g0260181 54.321 567 235 6 151 708 98 649 0.0 572
Msa0578890 MtrunA17_Chr5g0425251 50.543 552 259 5 152 700 111 651 0.0 559
Msa0578890 MtrunA17_Chr3g0115481 49.642 558 256 7 152 700 114 655 0.0 531
Msa0578890 MtrunA17_Chr2g0278931 50.365 548 257 6 152 696 116 651 1.47e-175 517
Msa0578890 MtrunA17_Chr6g0485191 42.200 609 321 10 114 709 99 689 3.42e-162 484
Msa0578890 MtrunA17_Chr3g0124381 44.384 552 290 6 152 698 112 651 6.77e-156 466
Msa0578890 MtrunA17_Chr5g0425241 44.604 556 297 7 152 702 104 653 4.32e-155 464
Msa0578890 MtrunA17_Chr3g0115461 43.863 554 296 7 152 698 109 654 2.59e-150 452
Msa0578890 MtrunA17_Chr3g0124371 40.463 561 310 10 155 702 110 659 6.86e-132 404
Msa0578890 MtrunA17_Chr1g0173031 55.340 309 67 4 151 459 107 344 6.81e-97 303
Msa0578890 MtrunA17_Chr7g0222631 34.915 527 318 11 152 673 108 614 4.33e-92 301
Msa0578890 MtrunA17_Chr4g0043981 83.871 186 27 1 1 183 1 186 4.50e-80 275
Msa0578890 MtrunA17_Chr4g0043981 40.299 134 76 4 21 150 475 608 6.22e-18 88.6
Msa0578890 MtrunA17_Chr4g0043961 66.265 83 25 2 627 707 1 82 8.74e-25 99.0
Msa0578890 MtrunA17_Chr4g0037431 36.090 133 80 3 25 152 54 186 4.20e-20 95.1
Msa0578890 MtrunA17_Chr4g0061971 35.542 166 95 6 15 169 23 187 1.61e-19 93.2
Msa0578890 MtrunA17_Chr8g0368541 36.879 141 81 4 37 169 42 182 3.10e-18 88.2
Msa0578890 MtrunA17_Chr5g0421461 39.706 68 40 1 30 96 9 76 7.62e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578890 AT1G23090.1 75.091 550 123 4 151 697 84 622 0.0 811
Msa0578890 AT1G23090.2 73.054 501 121 4 200 697 1 490 0.0 717
Msa0578890 AT1G23090.3 73.054 501 121 4 200 697 1 490 0.0 717
Msa0578890 AT1G23090.4 73.054 501 121 4 200 697 1 490 0.0 717
Msa0578890 AT3G15990.1 63.908 568 166 7 151 703 107 650 0.0 687
Msa0578890 AT3G51895.2 52.224 607 262 9 122 715 108 699 0.0 597
Msa0578890 AT3G51895.1 52.224 607 262 9 122 715 63 654 0.0 597
Msa0578890 AT4G08620.1 49.462 558 266 6 152 705 104 649 1.27e-177 522
Msa0578890 AT4G02700.1 51.049 572 257 6 131 695 71 626 3.00e-175 516
Msa0578890 AT1G22150.1 49.009 555 269 5 152 703 112 655 3.12e-171 506
Msa0578890 AT1G22150.3 49.009 555 269 5 152 703 112 655 3.12e-171 506
Msa0578890 AT1G22150.4 49.009 555 269 5 152 703 112 655 3.12e-171 506
Msa0578890 AT1G78000.2 46.812 596 289 8 122 703 71 652 3.95e-168 498
Msa0578890 AT1G78000.1 46.812 596 289 8 122 703 71 652 3.95e-168 498
Msa0578890 AT1G78000.3 46.812 596 289 8 122 703 71 652 3.95e-168 498
Msa0578890 AT1G78000.5 47.247 563 266 7 113 657 56 605 2.65e-162 482
Msa0578890 AT5G19600.1 43.373 581 289 7 127 695 70 622 2.45e-159 475
Msa0578890 AT5G10180.1 46.898 548 273 7 152 693 134 669 2.06e-156 469
Msa0578890 AT1G22150.2 50.207 482 229 3 152 632 112 583 1.35e-155 464
Msa0578890 AT1G78000.4 47.584 538 251 7 113 632 56 580 2.38e-154 461
Msa0578890 AT1G77990.1 44.283 551 285 7 152 693 126 663 4.08e-153 460
Msa0578890 AT1G78000.7 49.123 456 219 4 179 632 1 445 1.12e-139 418
Msa0578890 AT1G78000.6 48.961 433 199 4 122 544 71 491 6.92e-120 369
Msa0578890 AT3G12520.2 34.228 596 333 16 124 693 48 610 2.53e-96 312
Msa0578890 AT3G12520.1 34.228 596 333 16 124 693 64 626 4.38e-96 312
Msa0578890 AT5G13550.1 32.730 608 360 16 124 711 77 655 2.05e-90 297
Msa0578890 AT3G12520.3 34.469 499 283 11 124 605 64 535 7.32e-86 281
Msa0578890 AT2G01460.2 51.899 237 103 5 1 230 1 233 2.24e-44 172
Msa0578890 AT2G01460.2 40.678 118 66 1 30 143 495 612 1.29e-16 84.7
Msa0578890 AT2G01460.1 51.899 237 103 5 1 230 1 233 3.12e-44 171
Msa0578890 AT2G01460.1 40.678 118 66 1 30 143 495 612 1.26e-16 85.1
Msa0578890 AT2G01460.3 51.899 237 103 5 1 230 1 233 3.34e-44 171
Msa0578890 AT2G01460.3 40.678 118 66 1 30 143 481 598 1.34e-16 84.7
Msa0578890 AT1G26190.2 36.986 146 84 4 32 169 37 182 7.65e-20 94.0
Msa0578890 AT1G26190.3 37.500 144 80 5 32 166 37 179 1.01e-19 93.6
Msa0578890 AT1G26190.4 37.500 144 80 5 32 166 37 179 1.08e-19 93.6
Msa0578890 AT1G26190.6 37.500 144 80 5 32 166 37 179 1.40e-19 94.0
Msa0578890 AT1G26190.1 37.500 144 80 5 32 166 37 179 1.51e-19 94.0
Msa0578890 AT1G73980.1 38.028 142 78 5 37 169 42 182 2.87e-18 89.7
Msa0578890 AT1G73980.3 38.028 142 78 5 37 169 42 182 2.87e-18 89.7
Msa0578890 AT1G73980.2 38.028 142 78 5 37 169 42 182 2.87e-18 89.7

Find 154 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTGGAATTTCAGATTT+TGG 0.112441 4_1:-83551905 None:intergenic
GTTCTGGATTCTATAGATTT+TGG 0.196109 4_1:+83553295 Msa0578890:CDS
CCACTTATTTATGCTGTTCT+TGG 0.200280 4_1:+83554582 Msa0578890:CDS
TTATCCAAAGCAATCTTAAT+TGG 0.209529 4_1:+83554894 Msa0578890:CDS
TGAGGAAACCAAAGCTATTC+TGG 0.221724 4_1:+83558443 Msa0578890:CDS
TGATCATGGATATTATTTAT+TGG 0.240963 4_1:+83552980 Msa0578890:CDS
CCAAGAACTCCGAGAGAAAA+AGG 0.280978 4_1:+83553013 Msa0578890:CDS
CTGCAACAGCAAGGCCTAAC+TGG 0.284427 4_1:-83559560 None:intergenic
GAAGAAGAAGGTGGGGAAAC+TGG 0.286986 4_1:+83551844 None:intergenic
TGGAATATGTTGAAATTTCA+TGG 0.294784 4_1:+83558723 Msa0578890:CDS
CAACAACTTAAGAGCTTACT+TGG 0.304881 4_1:+83554951 Msa0578890:CDS
AGCAATCTTAATTGGATTCA+TGG 0.313090 4_1:+83554902 Msa0578890:CDS
AAGCTTCACTAGGAATTCTA+AGG 0.315034 4_1:+83554751 Msa0578890:CDS
GTGATGTTAACCGCTTTCTT+TGG 0.327317 4_1:+83559519 Msa0578890:CDS
GTATGCTTACACGCAGAAAA+TGG 0.335759 4_1:-83555523 None:intergenic
TCCCCGCTGCCTGCCACATT+TGG 0.336834 4_1:+83559472 Msa0578890:CDS
GGAACAATGGCATAAGAAAA+AGG 0.348636 4_1:-83559386 None:intergenic
TACCACTTCTGATTCCTTTG+TGG 0.351265 4_1:-83552046 None:intergenic
AAAATTATGAGTGCTTCATC+TGG 0.353337 4_1:+83553965 Msa0578890:CDS
CTTCTTCCGTCTTGGTTGAC+TGG 0.362920 4_1:-83560674 None:intergenic
AAGGAATAAATCCTTCTTCA+TGG 0.363775 4_1:+83558703 Msa0578890:CDS
CTGATTCCTTTGTGGTGTGA+TGG 0.364489 4_1:-83552038 None:intergenic
GCAAATCTTCCTCCAATTGT+TGG 0.366664 4_1:+83554457 Msa0578890:CDS
AGGAAGGACATTTGCAGCTC+TGG 0.374925 4_1:+83558970 Msa0578890:CDS
AATAAAGAAATGATGGCAAT+TGG 0.378840 4_1:+83559013 Msa0578890:CDS
GAATCCAATTAAGATTGCTT+TGG 0.382130 4_1:-83554898 None:intergenic
ACACATTACCTGACATTTCC+AGG 0.383701 4_1:-83560063 None:intergenic
ATAGAAATCTTCATCAATAC+AGG 0.385942 4_1:+83559786 Msa0578890:CDS
TGGAAAACAGAACTCATAAC+AGG 0.395270 4_1:-83555008 None:intergenic
TGGAGGAAGATTTGCAAGCT+TGG 0.399551 4_1:-83554449 None:intergenic
CTTGGTCTAGTCGTGAAAAC+TGG 0.401338 4_1:+83558753 Msa0578890:CDS
AGTAATCGCGTCCACCTTCA+TGG 0.401456 4_1:-83552114 None:intergenic
AGTGATGGGAATTTGCTTCT+TGG 0.405363 4_1:+83555365 Msa0578890:CDS
ATTGCGCCCAATACAACATT+AGG 0.408565 4_1:-83559417 None:intergenic
TACACACCTAATGTTGTATT+GGG 0.409395 4_1:+83559411 Msa0578890:CDS
ATACACACCTAATGTTGTAT+TGG 0.411358 4_1:+83559410 Msa0578890:CDS
TGATTCCTTTGTGGTGTGAT+GGG 0.416230 4_1:-83552037 None:intergenic
CTTGACAGTTGGAGAGGCTG+TGG 0.416310 4_1:+83560626 Msa0578890:CDS
GCAGAGACCCAGAATAGCTT+TGG 0.416415 4_1:-83558451 None:intergenic
TTCAACATATTCCATGAAGA+AGG 0.416613 4_1:-83558714 None:intergenic
ATTGGTGGTCCGAGCGGTTC+TGG 0.417162 4_1:+83553056 Msa0578890:CDS
GTAGTGTTGATCGGAGAAAA+TGG 0.421759 4_1:+83552066 Msa0578890:exon
TAAAAGCAACAATGGAAAAG+AGG 0.421997 4_1:+83560403 Msa0578890:CDS
TTCCAAATGTGGCAGGCAGC+GGG 0.422579 4_1:-83559474 None:intergenic
TGGTTGTACTGTTATATCAA+TGG 0.423986 4_1:+83553240 Msa0578890:CDS
CTTGTTACAGTTGGCATTGG+TGG 0.427797 4_1:+83553041 Msa0578890:CDS
GCAATCAAGGCTCAAAATCA+TGG 0.431453 4_1:+83558520 Msa0578890:CDS
AGTTGATGAAGGGAACGTTC+TGG 0.433864 4_1:+83553279 Msa0578890:CDS
AAGCTATTCTGGGTCTCTGC+TGG 0.437220 4_1:+83558454 Msa0578890:CDS
TATCAGCAAAAGAGACGTAT+TGG 0.443826 4_1:+83553935 Msa0578890:CDS
ATAAAGAAATGATGGCAATT+GGG 0.445514 4_1:+83559014 Msa0578890:CDS
GCTAGTTGAAGAAACAGAAC+AGG 0.445796 4_1:-83554696 None:intergenic
AGAAGAGGAAGATAACATAA+AGG 0.445883 4_1:+83560015 Msa0578890:CDS
CACTTACATAGTCCAACAAT+TGG 0.446401 4_1:-83554469 None:intergenic
ACAAGTGAAGCAATAGAAAC+AGG 0.450000 4_1:-83554630 None:intergenic
GTGATGTTTGCAAAATTGAT+AGG 0.450588 4_1:-83559854 None:intergenic
ATCGATGAAGAAGAAGTTGA+AGG 0.452553 4_1:-83552148 None:intergenic
ACTTCCTGCTATGTAACAAC+AGG 0.458112 4_1:+83559061 Msa0578890:CDS
GAGGAAACCAAAGCTATTCT+GGG 0.459759 4_1:+83558444 Msa0578890:CDS
GGCCTTGTTACAGTTGGCAT+TGG 0.462314 4_1:+83553038 Msa0578890:CDS
TGAGATTCCACTTGTGTCAA+TGG 0.462450 4_1:-83560367 None:intergenic
AAGGCCTAAAACAGTAATGA+TGG 0.462741 4_1:+83559739 Msa0578890:CDS
ATCATAGTCACAGCAGTGAT+TGG 0.463581 4_1:+83559438 Msa0578890:CDS
ATACAACATTAGGTGTGTAT+TGG 0.467671 4_1:-83559407 None:intergenic
TGCGATTAGGATTTGACAAA+AGG 0.468921 4_1:+83553884 Msa0578890:intron
ATCTTAATTGGATTCATGGC+TGG 0.470414 4_1:+83554906 Msa0578890:CDS
TCCTTTGTGGTGTGATGGGA+TGG 0.472147 4_1:-83552033 None:intergenic
TGTATGTGCTTCTTCCGTCT+TGG 0.473979 4_1:-83560682 None:intergenic
GTCTATCTTCCAAATGTGGC+AGG 0.478726 4_1:-83559481 None:intergenic
GAGATTATGACACACATAAG+AGG 0.480206 4_1:-83558481 None:intergenic
CTCTTGAAGCTTAACAGAAA+AGG 0.488259 4_1:+83553204 Msa0578890:intron
CTTCCAAATGTGGCAGGCAG+CGG 0.488725 4_1:-83559475 None:intergenic
GTGTGGAGTGTGATGTGAAA+TGG 0.491237 4_1:-83551995 None:intergenic
ATCATTTAAACTGTAAAGTG+TGG 0.492622 4_1:-83560792 None:intergenic
CCTCTCCAACTGTCAAGAAA+AGG 0.505332 4_1:-83560620 None:intergenic
TATTGTGATGGAGTTGATGA+AGG 0.509581 4_1:+83553268 Msa0578890:CDS
GGATACTCCTGCAAATTACA+AGG 0.513068 4_1:+83559720 Msa0578890:CDS
GGATGGAAATAAAGAAATGA+TGG 0.515894 4_1:+83559006 Msa0578890:CDS
AAAAGCAACAATGGAAAAGA+GGG 0.517204 4_1:+83560404 Msa0578890:CDS
CAAGGAGTTAAAAGCAACAA+TGG 0.517597 4_1:+83560395 Msa0578890:CDS
ATGCTCAAAATAAGAAAGCC+TGG 0.523631 4_1:-83559824 None:intergenic
TCAATCTCTTCCTCTTCATG+TGG 0.528226 4_1:+83552174 Msa0578890:CDS
AAATTATGAGTGCTTCATCT+GGG 0.529239 4_1:+83553966 Msa0578890:CDS
TAGATTGGAAAATTGCATGA+AGG 0.530054 4_1:+83558684 Msa0578890:intron
TGATTATTTACATACACTCT+CGG 0.531979 4_1:+83560924 Msa0578890:three_prime_UTR
AAGAAGAAGGTGGGGAAACT+GGG 0.532432 4_1:+83551845 None:intergenic
AAATTTCATGGAAGTCACCT+TGG 0.533094 4_1:+83558735 Msa0578890:CDS
AGGCCTAAAACAGTAATGAT+GGG 0.534416 4_1:+83559740 Msa0578890:CDS
GGAAGGACATTTGCAGCTCT+GGG 0.536167 4_1:+83558971 Msa0578890:CDS
AACCTCAAGATTCTTGATCA+AGG 0.542496 4_1:-83553320 None:intergenic
AAGGATGGCCTTGTTACAGT+TGG 0.543374 4_1:+83553032 Msa0578890:CDS
TATATATATACCACATGAAG+AGG 0.544201 4_1:-83552184 None:intergenic
GGTCTATTTCAAGCTTCACT+AGG 0.546560 4_1:+83554741 Msa0578890:CDS
GTGAAAACTGGCATTATCAC+TGG 0.547543 4_1:+83558765 Msa0578890:CDS
TGCTGTTCTTGGAAGCTCAA+GGG 0.550006 4_1:+83554593 Msa0578890:CDS
AGAACCTGTTGTTACATAGC+AGG 0.550167 4_1:-83559065 None:intergenic
GTCATGGCAAACAATAGTGA+TGG 0.551750 4_1:+83555350 Msa0578890:CDS
TTTCTATATATGTCTGTCCC+TGG 0.552220 4_1:-83559770 None:intergenic
CTGGGAAACTACAAAGTGGA+TGG 0.553696 4_1:+83558989 Msa0578890:CDS
CCAAGAACAGCATAAATAAG+TGG 0.556426 4_1:-83554582 None:intergenic
TCAGCTGTTAATAACAATGC+AGG 0.561538 4_1:+83559309 Msa0578890:CDS
TACCTTGATCAAGAATCTTG+AGG 0.564195 4_1:+83553318 Msa0578890:CDS
AACAGAACAGGTTCTGCTGA+AGG 0.564338 4_1:-83554684 None:intergenic
ACATCACATATCTCAATGAC+AGG 0.566479 4_1:+83559870 Msa0578890:CDS
AAACAGGAAGGTATTGCAGT+AGG 0.569633 4_1:+83558950 Msa0578890:intron
ATGCTGTTCTTGGAAGCTCA+AGG 0.570962 4_1:+83554592 Msa0578890:CDS
ATTTGTCTATCTTCCAAATG+TGG 0.574245 4_1:-83559485 None:intergenic
CACCAATGCCAACTGTAACA+AGG 0.584166 4_1:-83553040 None:intergenic
ATTGGGTGTATGAATGTGGT+TGG 0.586439 4_1:+83559031 Msa0578890:CDS
TTACATAGTCCAACAATTGG+AGG 0.587072 4_1:-83554466 None:intergenic
GTAATGATGGGGAATATACC+AGG 0.587250 4_1:+83559752 Msa0578890:CDS
TCAGAAGTGGTAGTGTTGAT+CGG 0.587671 4_1:+83552057 Msa0578890:five_prime_UTR
TGTATTCTGACAGCTTGTGT+TGG 0.588408 4_1:+83560524 Msa0578890:intron
GTGAGCGCCATTGACACAAG+TGG 0.593369 4_1:+83560360 Msa0578890:CDS
GTGTGATGGGATGGTGAGAG+AGG 0.596005 4_1:-83552024 None:intergenic
CGAGCGGTTCTGGTAAAACA+AGG 0.596339 4_1:+83553066 Msa0578890:CDS
ATAAATGCATGCAGAGCATG+AGG 0.596892 4_1:+83558425 Msa0578890:intron
TCAATGGAGAATTATTGTGA+TGG 0.599697 4_1:+83553256 Msa0578890:CDS
CTTGATATTAATCAGTAATG+TGG 0.600180 4_1:-83560711 None:intergenic
GGCAATTGGGTGTATGAATG+TGG 0.608184 4_1:+83559027 Msa0578890:CDS
TCATGGCAAACAATAGTGAT+GGG 0.609552 4_1:+83555351 Msa0578890:CDS
TGTTACATAGCAGGAAGTGA+AGG 0.613521 4_1:-83559056 None:intergenic
TATGAGTGCTTCATCTGGGG+TGG 0.613933 4_1:+83553970 Msa0578890:CDS
TTAGGTGTGTATTGGAACAA+TGG 0.616093 4_1:-83559399 None:intergenic
AGGAAGGTATTGCAGTAGGA+AGG 0.616887 4_1:+83558954 Msa0578890:intron
ACGATGGATTGAAGAAGAAG+AGG 0.617925 4_1:+83560000 Msa0578890:CDS
AGGGAAGCTACAAGAATACC+AGG 0.627065 4_1:+83559806 Msa0578890:CDS
GGCCTAAAACAGTAATGATG+GGG 0.628045 4_1:+83559741 Msa0578890:CDS
GGTGAGAGAGGAATCTTGTG+TGG 0.629356 4_1:-83552012 None:intergenic
GAGTGTCACCATCACTGTCA+CGG 0.630556 4_1:-83559364 None:intergenic
TATTGTGAAACTTACAGTGA+GGG 0.630959 4_1:-83558796 None:intergenic
CACCACAAAGGAATCAGAAG+TGG 0.634876 4_1:+83552044 Msa0578890:five_prime_UTR
ATCATATTAGGACGCTACGA+TGG 0.635788 4_1:+83559984 Msa0578890:intron
TTGAAGCTTAACAGAAAAGG+TGG 0.639240 4_1:+83553207 Msa0578890:intron
GAAGAGCCAGTCAACCAAGA+CGG 0.642630 4_1:+83560668 Msa0578890:CDS
AGAAAGCGGTTAACATCACA+AGG 0.644103 4_1:-83559515 None:intergenic
ATTGTGATGGAGTTGATGAA+GGG 0.645394 4_1:+83553269 Msa0578890:CDS
ATGAACTCACTGCAACAGCA+AGG 0.645871 4_1:-83559569 None:intergenic
ATTATGAACAAAATCTTGTG+AGG 0.646128 4_1:-83560863 None:intergenic
TAGAAATCTTCATCAATACA+GGG 0.647002 4_1:+83559787 Msa0578890:CDS
AATTATGAGTGCTTCATCTG+GGG 0.647410 4_1:+83553967 Msa0578890:CDS
AGGCAGCGGGGATATCAATG+AGG 0.648129 4_1:-83559461 None:intergenic
AGTAATGTCCGTGACAGTGA+TGG 0.653422 4_1:+83559356 Msa0578890:CDS
AGCTCAAGGGATCTAGCAGT+AGG 0.655950 4_1:+83554606 Msa0578890:CDS
AGAACAGCATAAATAAGTGG+AGG 0.660588 4_1:-83554579 None:intergenic
TCCAAATGTGGCAGGCAGCG+GGG 0.664752 4_1:-83559473 None:intergenic
GTTGGCATTGGTGGTCCGAG+CGG 0.667345 4_1:+83553050 Msa0578890:CDS
ACCATCCCATCACACCACAA+AGG 0.678386 4_1:+83552032 Msa0578890:five_prime_UTR
GTTGGTGAATCCTCTTGCCG+AGG 0.678987 4_1:+83560542 Msa0578890:CDS
AAAGCAACAATGGAAAAGAG+GGG 0.696537 4_1:+83560405 Msa0578890:CDS
TTACACGCAGAAAATGGACA+AGG 0.697957 4_1:-83555517 None:intergenic
TACACGCAGAAAATGGACAA+GGG 0.710332 4_1:-83555516 None:intergenic
TAATGATGGGGAATATACCA+GGG 0.716136 4_1:+83559753 Msa0578890:CDS
AGCTCTGGGAAACTACAAAG+TGG 0.725432 4_1:+83558985 Msa0578890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTAATTATATATATT+TGG - chr4_1:83551923-83551942 None:intergenic 0.0%
!! AAATATATATAATTATTAAA+TGG + chr4_1:83556919-83556938 Msa0578890:intron 0.0%
!!! ATTAAAGGTATAAATTTAAA+GGG - chr4_1:83553452-83553471 None:intergenic 10.0%
!!! AATTAAAGGTATAAATTTAA+AGG - chr4_1:83553453-83553472 None:intergenic 10.0%
!!! AAATTTATACCTTTAATTTT+TGG + chr4_1:83553455-83553474 Msa0578890:intron 10.0%
!! AAAAATAATGAATAAAATGA+AGG - chr4_1:83556486-83556505 None:intergenic 10.0%
!!! ATTCATTATTTTTTTTACAT+TGG + chr4_1:83556493-83556512 Msa0578890:intron 10.0%
!! AAAAAAATGATTATATTAAG+AGG + chr4_1:83556836-83556855 Msa0578890:intron 10.0%
!!! TATAATATGCATTTTTTTTA+TGG + chr4_1:83556946-83556965 Msa0578890:intron 10.0%
!!! ATAATATGCATTTTTTTTAT+GGG + chr4_1:83556947-83556966 Msa0578890:intron 10.0%
!!! TTTAAAAAAAGTTATGATTT+TGG + chr4_1:83557070-83557089 Msa0578890:intron 10.0%
!! TCAAAGAATAATATTATATA+GGG - chr4_1:83557097-83557116 None:intergenic 10.0%
!! ATCAAAGAATAATATTATAT+AGG - chr4_1:83557098-83557117 None:intergenic 10.0%
!!! ATTAAGAAAAAAATAGATTT+TGG + chr4_1:83557395-83557414 Msa0578890:intron 10.0%
!!! AATATTTTCTCATAATAAAA+AGG - chr4_1:83557821-83557840 None:intergenic 10.0%
!!! TAACTTTTTTTACTTAATAA+GGG - chr4_1:83558027-83558046 None:intergenic 10.0%
!!! TTAACTTTTTTTACTTAATA+AGG - chr4_1:83558028-83558047 None:intergenic 10.0%
!!! AATACAATTTACTTTTTTTG+TGG - chr4_1:83551967-83551986 None:intergenic 15.0%
!!! TTTTTTTCTTCAAATTTTAC+AGG - chr4_1:83552507-83552526 None:intergenic 15.0%
!! AGCTAAAAATATGAATAAAA+TGG + chr4_1:83552797-83552816 Msa0578890:intron 15.0%
!!! TGTCTATGTATTTATTATTT+TGG + chr4_1:83553106-83553125 Msa0578890:intron 15.0%
!!! ATGTATTTATTATTTTGGTT+TGG + chr4_1:83553111-83553130 Msa0578890:intron 15.0%
!! TTAACTTATTATGTACTTAT+AGG + chr4_1:83553769-83553788 Msa0578890:intron 15.0%
!! ATTAGTACTAATTAATTAAG+AGG - chr4_1:83554350-83554369 None:intergenic 15.0%
!!! AATTATGTAACTTGTTTATT+AGG + chr4_1:83554414-83554433 Msa0578890:intron 15.0%
!!! ATTATGTAACTTGTTTATTA+GGG + chr4_1:83554415-83554434 Msa0578890:intron 15.0%
!!! TTTATCACCATTTTATATAT+TGG - chr4_1:83555570-83555589 None:intergenic 15.0%
!! AATATATAAAATGGTGATAA+AGG + chr4_1:83555569-83555588 Msa0578890:intron 15.0%
!! TTATAAGTAAATGTTATGAT+AGG + chr4_1:83555936-83555955 Msa0578890:intron 15.0%
!!! AACAATTTTTTTTAGTTTAG+AGG + chr4_1:83556225-83556244 Msa0578890:intron 15.0%
!!! ACAATTTTTTTTAGTTTAGA+GGG + chr4_1:83556226-83556245 Msa0578890:intron 15.0%
!! AATATAATAAAAATTCGTCT+TGG - chr4_1:83556696-83556715 None:intergenic 15.0%
!!! TTTGAAGTTTTTTTTTTTGA+AGG + chr4_1:83556714-83556733 Msa0578890:intron 15.0%
!!! ACCATATAATATTTTTTCAA+TGG + chr4_1:83556867-83556886 Msa0578890:intron 15.0%
!! TCCATTGAAAAAATATTATA+TGG - chr4_1:83556871-83556890 None:intergenic 15.0%
!!! ATGTTTTTGAAAGTTTTTAT+TGG + chr4_1:83556895-83556914 Msa0578890:intron 15.0%
!! GAATGTACATTTATTATTAT+GGG + chr4_1:83556969-83556988 Msa0578890:intron 15.0%
!!! TAGGTAAAAAAAAATCATTT+TGG + chr4_1:83557199-83557218 Msa0578890:intron 15.0%
!!! AAATGATTTTTTTAGCAAAA+TGG + chr4_1:83557455-83557474 Msa0578890:intron 15.0%
!! AATTGATGGAATAAAAAAAT+CGG + chr4_1:83557777-83557796 Msa0578890:intron 15.0%
!! AGAAATAATAATTAATCTCA+TGG - chr4_1:83558646-83558665 None:intergenic 15.0%
!! TTAAAAAAAAAAAAACAGGA+AGG + chr4_1:83558938-83558957 Msa0578890:intron 15.0%
!!! TATTTGGAATTTCAGATTTT+GGG - chr4_1:83551907-83551926 None:intergenic 20.0%
!!! ATATTTGGAATTTCAGATTT+TGG - chr4_1:83551908-83551927 None:intergenic 20.0%
!!! TTTATATTTTGTAGATAGAG+TGG + chr4_1:83552680-83552699 Msa0578890:intron 20.0%
!!! TGTTCATGTAAATTGAATTT+TGG + chr4_1:83552709-83552728 Msa0578890:intron 20.0%
!!! AGTAGTATTGCTAATTATTT+TGG + chr4_1:83552826-83552845 Msa0578890:intron 20.0%
!!! TATATATTTTGTAGATAGAG+TGG + chr4_1:83552854-83552873 Msa0578890:intron 20.0%
!!! ATATATTTTGTAGATAGAGT+GGG + chr4_1:83552855-83552874 Msa0578890:intron 20.0%
!! TGATCATGGATATTATTTAT+TGG + chr4_1:83552980-83552999 Msa0578890:CDS 20.0%
!! AAAAATTAAGAGAAAAACCA+AGG - chr4_1:83553170-83553189 None:intergenic 20.0%
!!! TCGAGTTTTATAAGTTATAT+TGG + chr4_1:83553483-83553502 Msa0578890:intron 20.0%
!! GCATAAAAAAGTTATTATCA+TGG - chr4_1:83553554-83553573 None:intergenic 20.0%
!!! AATAACTTTTTTATGCGTAA+CGG + chr4_1:83553558-83553577 Msa0578890:intron 20.0%
!! AAATGATATGTAAGATTAGA+AGG + chr4_1:83553658-83553677 Msa0578890:intron 20.0%
!! AATGATATGTAAGATTAGAA+GGG + chr4_1:83553659-83553678 Msa0578890:intron 20.0%
!! TGAATAAGTTAAGTTCAAAA+GGG - chr4_1:83554395-83554414 None:intergenic 20.0%
!! TTGAATAAGTTAAGTTCAAA+AGG - chr4_1:83554396-83554415 None:intergenic 20.0%
!!! ATACCTTTTTTAGAACATAT+GGG - chr4_1:83554815-83554834 None:intergenic 20.0%
!!! TATACCTTTTTTAGAACATA+TGG - chr4_1:83554816-83554835 None:intergenic 20.0%
!!! TGTTATTTATTAATGATTGC+AGG + chr4_1:83554850-83554869 Msa0578890:intron 20.0%
!!! TTACATTGGTCAAATTTTTA+AGG + chr4_1:83556507-83556526 Msa0578890:intron 20.0%
!! GGAATGTACATTTATTATTA+TGG + chr4_1:83556968-83556987 Msa0578890:intron 20.0%
!!! GTAAAAAAAAATCATTTTGG+AGG + chr4_1:83557202-83557221 Msa0578890:intron 20.0%
!!! TCTATTTTTTTCTTAATGCA+AGG - chr4_1:83557392-83557411 None:intergenic 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG + chr4_1:83557428-83557447 Msa0578890:intron 20.0%
!! AAAAAAAATCCAAAACAAAC+AGG + chr4_1:83557553-83557572 Msa0578890:intron 20.0%
!!! ACATACAATCGTTTTTTTTA+AGG + chr4_1:83557623-83557642 Msa0578890:intron 20.0%
!!! TGTGATTCTTTTTTCTTTTT+TGG - chr4_1:83557673-83557692 None:intergenic 20.0%
!! CATTATCAAAACACAAAAAA+AGG - chr4_1:83557719-83557738 None:intergenic 20.0%
!!! CTTTTTTTGTGTTTTGATAA+TGG + chr4_1:83557717-83557736 Msa0578890:intron 20.0%
!! TAAGTAATTTATCGAATTGA+TGG + chr4_1:83557763-83557782 Msa0578890:intron 20.0%
!! CTTTAATCAATAAGACTATT+AGG - chr4_1:83557896-83557915 None:intergenic 20.0%
!!! CTAATAGTCTTATTGATTAA+AGG + chr4_1:83557894-83557913 Msa0578890:intron 20.0%
!! CTAAGATTTCAAAAAGAAAA+TGG - chr4_1:83557928-83557947 None:intergenic 20.0%
!!! CATTTTCTTTTTGAAATCTT+AGG + chr4_1:83557926-83557945 Msa0578890:intron 20.0%
!!! AATTTTAAGATGCAAATCTT+TGG - chr4_1:83558177-83558196 None:intergenic 20.0%
!!! GAACTTATGAATTTTAAGTT+TGG - chr4_1:83558224-83558243 None:intergenic 20.0%
!! AAATATATCAGATACCTATT+GGG - chr4_1:83558278-83558297 None:intergenic 20.0%
!! AAAATATATCAGATACCTAT+TGG - chr4_1:83558279-83558298 None:intergenic 20.0%
!! TGAAATTCATAGTTTAAATG+AGG - chr4_1:83559274-83559293 None:intergenic 20.0%
!! TCATTTAAACTATGAATTTC+AGG + chr4_1:83559273-83559292 Msa0578890:intron 20.0%
!!! TAGTATTGACATATCATATT+AGG + chr4_1:83559972-83559991 Msa0578890:intron 20.0%
!! CAAATAAATATGATGTAAGA+GGG - chr4_1:83560328-83560347 None:intergenic 20.0%
!! TCAAATAAATATGATGTAAG+AGG - chr4_1:83560329-83560348 None:intergenic 20.0%
!!! GATTTAAGACATATCTATTA+AGG - chr4_1:83560484-83560503 None:intergenic 20.0%
!!! CAATTTACTTTTTTTGTGGT+TGG - chr4_1:83551963-83551982 None:intergenic 25.0%
! TATATATATACCACATGAAG+AGG - chr4_1:83552187-83552206 None:intergenic 25.0%
!! TCCTTCATTTCTTCAATTTT+AGG + chr4_1:83552329-83552348 Msa0578890:intron 25.0%
!! CCTTCATTTCTTCAATTTTA+GGG + chr4_1:83552330-83552349 Msa0578890:intron 25.0%
!!! TGTGTGTGTTTATTTTTCAT+AGG - chr4_1:83552471-83552490 None:intergenic 25.0%
!! GAGAGTGATGTTAATTATTT+TGG + chr4_1:83552652-83552671 Msa0578890:intron 25.0%
!! TATATTTTGTAGATAGAGTG+GGG + chr4_1:83552682-83552701 Msa0578890:intron 25.0%
!!! TTATTATTTTGGTTTGGATG+TGG + chr4_1:83553117-83553136 Msa0578890:intron 25.0%
!!! TTAATTTTTTCTCTGTTTCG+TGG + chr4_1:83553181-83553200 Msa0578890:intron 25.0%
! ATAACTTATAAAACTCGAGA+AGG - chr4_1:83553481-83553500 None:intergenic 25.0%
!! AGTTATTATCATGGCTTTTT+GGG - chr4_1:83553545-83553564 None:intergenic 25.0%
!! AAGTTATTATCATGGCTTTT+TGG - chr4_1:83553546-83553565 None:intergenic 25.0%
!!! ATAACTTTTTTATGCGTAAC+GGG + chr4_1:83553559-83553578 Msa0578890:intron 25.0%
!! CTTACATATCATTTTCTCTT+GGG - chr4_1:83553652-83553671 None:intergenic 25.0%
!! TCTTACATATCATTTTCTCT+TGG - chr4_1:83553653-83553672 None:intergenic 25.0%
! ACTTATTATGTACTTATAGG+CGG + chr4_1:83553772-83553791 Msa0578890:intron 25.0%
!!! ATTTTTTCCCTATTCTTCAA+TGG + chr4_1:83554229-83554248 Msa0578890:intron 25.0%
!!! TTTTTTCCCTATTCTTCAAT+GGG + chr4_1:83554230-83554249 Msa0578890:intron 25.0%
!!! TTTCCCATATGTTCTAAAAA+AGG + chr4_1:83554809-83554828 Msa0578890:intron 25.0%
! TTATCCAAAGCAATCTTAAT+TGG + chr4_1:83554894-83554913 Msa0578890:CDS 25.0%
!! AATTAACCTCATGTATGTTT+TGG - chr4_1:83555031-83555050 None:intergenic 25.0%
! GACAATGCATAATATATACA+AGG + chr4_1:83555166-83555185 Msa0578890:intron 25.0%
!! ATTTTCTTTCTACAATCTCA+TGG + chr4_1:83555493-83555512 Msa0578890:CDS 25.0%
!! TGATAAAGGTATATAGTTTC+AGG + chr4_1:83555583-83555602 Msa0578890:intron 25.0%
! TGCACAAATAATAAAACACA+TGG + chr4_1:83555606-83555625 Msa0578890:intron 25.0%
! TGGGAAAAGAATAAAATCAT+AGG - chr4_1:83555712-83555731 None:intergenic 25.0%
! AAATAGAGAAAGAAACACTT+GGG - chr4_1:83555731-83555750 None:intergenic 25.0%
! AAAATAGAGAAAGAAACACT+TGG - chr4_1:83555732-83555751 None:intergenic 25.0%
! TTATGTAGTAAAAGTCGAAA+CGG - chr4_1:83555882-83555901 None:intergenic 25.0%
!!! TGTTTTTACACATCATACAA+AGG - chr4_1:83556101-83556120 None:intergenic 25.0%
!! TTATTATTATGGGTGAGTTT+TGG + chr4_1:83556979-83556998 Msa0578890:intron 25.0%
!! TTAATTACTCGAGAGATTTT+GGG - chr4_1:83557579-83557598 None:intergenic 25.0%
!! TTTAATTACTCGAGAGATTT+TGG - chr4_1:83557580-83557599 None:intergenic 25.0%
! AAAAGAATCACATGCATTAT+TGG + chr4_1:83557681-83557700 Msa0578890:intron 25.0%
!!! TTTCTTTTTGAAATCTTAGG+TGG + chr4_1:83557929-83557948 Msa0578890:intron 25.0%
! AAGTAAAAAAAGTTAACACG+AGG + chr4_1:83558032-83558051 Msa0578890:intron 25.0%
!! AGATACGTTTTGCAAATTTT+GGG + chr4_1:83558092-83558111 Msa0578890:intron 25.0%
! CAACTTTATGTCTAAGAAAT+TGG - chr4_1:83558135-83558154 None:intergenic 25.0%
!!! TATTGATTTTAGCATGCAAT+TGG - chr4_1:83558251-83558270 None:intergenic 25.0%
! TATATATACAACAACTTCTC+TGG + chr4_1:83558354-83558373 Msa0578890:intron 25.0%
! TGGAATATGTTGAAATTTCA+TGG + chr4_1:83558723-83558742 Msa0578890:CDS 25.0%
!! ATTTTCCCTCTCATTATTTT+TGG + chr4_1:83558821-83558840 Msa0578890:intron 25.0%
!!! TGCATAGTAGGTTTTATAAA+TGG + chr4_1:83558890-83558909 Msa0578890:intron 25.0%
!!! GGTTTTATAAATGGCAAAAA+TGG + chr4_1:83558899-83558918 Msa0578890:intron 25.0%
! AATAAAGAAATGATGGCAAT+TGG + chr4_1:83559013-83559032 Msa0578890:CDS 25.0%
! ATAAAGAAATGATGGCAATT+GGG + chr4_1:83559014-83559033 Msa0578890:CDS 25.0%
! GTTTGTCACATAAATTCAAA+AGG + chr4_1:83559089-83559108 Msa0578890:intron 25.0%
! ATAGAAATCTTCATCAATAC+AGG + chr4_1:83559786-83559805 Msa0578890:CDS 25.0%
! TAGAAATCTTCATCAATACA+GGG + chr4_1:83559787-83559806 Msa0578890:CDS 25.0%
!!! TATTTTTGATACAGCAAATG+TGG + chr4_1:83560085-83560104 Msa0578890:intron 25.0%
! CTTGATATTAATCAGTAATG+TGG - chr4_1:83560714-83560733 None:intergenic 25.0%
! ATCATTTAAACTGTAAAGTG+TGG - chr4_1:83560795-83560814 None:intergenic 25.0%
! ATTATGAACAAAATCTTGTG+AGG - chr4_1:83560866-83560885 None:intergenic 25.0%
!! TCACAAGATTTTGTTCATAA+TGG + chr4_1:83560865-83560884 Msa0578890:three_prime_UTR 25.0%
! TGATTATTTACATACACTCT+CGG + chr4_1:83560924-83560943 Msa0578890:three_prime_UTR 25.0%
AGAATGATCGAATACGAAAA+CGG - chr4_1:83552242-83552261 None:intergenic 30.0%
CCCTAAAATTGAAGAAATGA+AGG - chr4_1:83552333-83552352 None:intergenic 30.0%
!! GGGCTCGAATTTAATTTTAT+AGG + chr4_1:83552350-83552369 Msa0578890:intron 30.0%
TATAACTATCTCAGATTCCA+TGG - chr4_1:83552929-83552948 None:intergenic 30.0%
!! ACAAGGTAAGGTATTGATAT+TGG + chr4_1:83553083-83553102 Msa0578890:intron 30.0%
TGGTTGTACTGTTATATCAA+TGG + chr4_1:83553240-83553259 Msa0578890:CDS 30.0%
TCAATGGAGAATTATTGTGA+TGG + chr4_1:83553256-83553275 Msa0578890:CDS 30.0%
!! GTTCTGGATTCTATAGATTT+TGG + chr4_1:83553295-83553314 Msa0578890:CDS 30.0%
GCTTGTAAAAATCATATCAC+AGG - chr4_1:83553618-83553637 None:intergenic 30.0%
! TTTTGCTGATAATCAAACTC+TGG - chr4_1:83553926-83553945 None:intergenic 30.0%
AAAATTATGAGTGCTTCATC+TGG + chr4_1:83553965-83553984 Msa0578890:CDS 30.0%
AAATTATGAGTGCTTCATCT+GGG + chr4_1:83553966-83553985 Msa0578890:CDS 30.0%
TGAGCTAATTATACTTTCGA+AGG + chr4_1:83553998-83554017 Msa0578890:intron 30.0%
! CTTTTAACACCATTTGTTTC+AGG + chr4_1:83554046-83554065 Msa0578890:intron 30.0%
CAACTATTACCTGAAACAAA+TGG - chr4_1:83554058-83554077 None:intergenic 30.0%
! TTTTTCCCTATTCTTCAATG+GGG + chr4_1:83554231-83554250 Msa0578890:intron 30.0%
CAAGGTCAGATTTAAAGATT+TGG - chr4_1:83554272-83554291 None:intergenic 30.0%
! TTTAAATCTGACCTTGTTTC+TGG + chr4_1:83554276-83554295 Msa0578890:intron 30.0%
ATAGAATTTGACAAACCTGT+GGG - chr4_1:83554326-83554345 None:intergenic 30.0%
ATAAGTTAAGTTCAAAAGGG+TGG - chr4_1:83554392-83554411 None:intergenic 30.0%
!! TCTATTGCTTCACTTGTTTT+AGG + chr4_1:83554636-83554655 Msa0578890:CDS 30.0%
TTGAAATAGACCAGCAAAAA+AGG - chr4_1:83554733-83554752 None:intergenic 30.0%
TTTATTAATGATTGCAGGCT+AGG + chr4_1:83554855-83554874 Msa0578890:intron 30.0%
GAATCCAATTAAGATTGCTT+TGG - chr4_1:83554901-83554920 None:intergenic 30.0%
AGCAATCTTAATTGGATTCA+TGG + chr4_1:83554902-83554921 Msa0578890:CDS 30.0%
! TGTTTTCCAAAACATACATG+AGG + chr4_1:83555022-83555041 Msa0578890:intron 30.0%
TATTTGTGTTTAGTGTAGCA+TGG - chr4_1:83555114-83555133 None:intergenic 30.0%
!!! GTATTTGTGTTTTTTTTCCG+AGG - chr4_1:83555205-83555224 None:intergenic 30.0%
GATCAACTCTATGTTACAAA+TGG - chr4_1:83555253-83555272 None:intergenic 30.0%
!!! TTATGTGTTTTTTTGTGCAG+TGG + chr4_1:83555328-83555347 Msa0578890:intron 30.0%
! AAGCATACCCTTTAAGAAAT+AGG + chr4_1:83555538-83555557 Msa0578890:intron 30.0%
! TACCCTTTAAGAAATAGGAA+AGG + chr4_1:83555543-83555562 Msa0578890:intron 30.0%
! ACCCTTTAAGAAATAGGAAA+GGG + chr4_1:83555544-83555563 Msa0578890:intron 30.0%
GAAAGGGCCAATATATAAAA+TGG + chr4_1:83555560-83555579 Msa0578890:intron 30.0%
GAATAAAATCATAGGACAAG+CGG - chr4_1:83555704-83555723 None:intergenic 30.0%
GATTTGTATAGCATGAATAC+GGG - chr4_1:83555809-83555828 None:intergenic 30.0%
CGATTTGTATAGCATGAATA+CGG - chr4_1:83555810-83555829 None:intergenic 30.0%
!! TTGACCGTTTTTAAGAACTA+TGG + chr4_1:83556390-83556409 Msa0578890:intron 30.0%
!! TGACCGTTTTTAAGAACTAT+GGG + chr4_1:83556391-83556410 Msa0578890:intron 30.0%
GAAGTTATACTCTAGATTCA+AGG + chr4_1:83556747-83556766 Msa0578890:intron 30.0%
!! GTGAGTTTTGGTATTTGTTT+TGG + chr4_1:83556991-83557010 Msa0578890:intron 30.0%
CCTACCATTAAATAGATCTA+GGG - chr4_1:83557183-83557202 None:intergenic 30.0%
ACCTACCATTAAATAGATCT+AGG - chr4_1:83557184-83557203 None:intergenic 30.0%
AAACACAAAAAAAGGTCATG+TGG - chr4_1:83557711-83557730 None:intergenic 30.0%
! CAGATACGTTTTGCAAATTT+TGG + chr4_1:83558091-83558110 Msa0578890:intron 30.0%
AAAATCAATACACACCCAAT+AGG + chr4_1:83558261-83558280 Msa0578890:intron 30.0%
GTTGTATATATATGTGTGCA+AGG - chr4_1:83558346-83558365 None:intergenic 30.0%
TTGAGAAGCAAATAATGAGT+TGG - chr4_1:83558576-83558595 None:intergenic 30.0%
!! ATTATTTCTGTCTTCTGATG+TGG + chr4_1:83558657-83558676 Msa0578890:intron 30.0%
! TTCATGCAATTTTCCAATCT+AGG - chr4_1:83558685-83558704 None:intergenic 30.0%
TAGATTGGAAAATTGCATGA+AGG + chr4_1:83558684-83558703 Msa0578890:intron 30.0%
AAGGAATAAATCCTTCTTCA+TGG + chr4_1:83558703-83558722 Msa0578890:CDS 30.0%
TTCAACATATTCCATGAAGA+AGG - chr4_1:83558717-83558736 None:intergenic 30.0%
TATTGTGAAACTTACAGTGA+GGG - chr4_1:83558799-83558818 None:intergenic 30.0%
ATATTGTGAAACTTACAGTG+AGG - chr4_1:83558800-83558819 None:intergenic 30.0%
GGATGGAAATAAAGAAATGA+TGG + chr4_1:83559006-83559025 Msa0578890:CDS 30.0%
ATACAACATTAGGTGTGTAT+TGG - chr4_1:83559410-83559429 None:intergenic 30.0%
ATACACACCTAATGTTGTAT+TGG + chr4_1:83559410-83559429 Msa0578890:CDS 30.0%
TACACACCTAATGTTGTATT+GGG + chr4_1:83559411-83559430 Msa0578890:CDS 30.0%
ATTTGTCTATCTTCCAAATG+TGG - chr4_1:83559488-83559507 None:intergenic 30.0%
CACAAAATATGATGTTCACA+AGG - chr4_1:83559613-83559632 None:intergenic 30.0%
! AGGTTGGATTATCAACTTTT+AGG + chr4_1:83559699-83559718 Msa0578890:intron 30.0%
GTGATGTTTGCAAAATTGAT+AGG - chr4_1:83559857-83559876 None:intergenic 30.0%
ACTAACTAGTTAAGTAACAG+AGG - chr4_1:83559956-83559975 None:intergenic 30.0%
AGAAGAGGAAGATAACATAA+AGG + chr4_1:83560015-83560034 Msa0578890:CDS 30.0%
AATAAGCTCAAAACATCCAT+AGG - chr4_1:83560248-83560267 None:intergenic 30.0%
TAAAAGCAACAATGGAAAAG+AGG + chr4_1:83560403-83560422 Msa0578890:CDS 30.0%
AAAAGCAACAATGGAAAAGA+GGG + chr4_1:83560404-83560423 Msa0578890:CDS 30.0%
ATCGATGAAGAAGAAGTTGA+AGG - chr4_1:83552151-83552170 None:intergenic 35.0%
GCTATAATTAGCAACACTTG+AGG - chr4_1:83552780-83552799 None:intergenic 35.0%
! TGAACTTTTGCGTGCTTAAT+TGG + chr4_1:83552897-83552916 Msa0578890:intron 35.0%
! ATTGTGCAGTCTTTTGATCA+TGG + chr4_1:83552966-83552985 Msa0578890:intron 35.0%
CTCTTGAAGCTTAACAGAAA+AGG + chr4_1:83553204-83553223 Msa0578890:intron 35.0%
TTGAAGCTTAACAGAAAAGG+TGG + chr4_1:83553207-83553226 Msa0578890:intron 35.0%
!! TATTGTGATGGAGTTGATGA+AGG + chr4_1:83553268-83553287 Msa0578890:CDS 35.0%
!! ATTGTGATGGAGTTGATGAA+GGG + chr4_1:83553269-83553288 Msa0578890:CDS 35.0%
TACCTTGATCAAGAATCTTG+AGG + chr4_1:83553318-83553337 Msa0578890:CDS 35.0%
AACCTCAAGATTCTTGATCA+AGG - chr4_1:83553323-83553342 None:intergenic 35.0%
AGACCTCTTCTTAATTACCA+CGG + chr4_1:83553387-83553406 Msa0578890:intron 35.0%
AAACCGTGGTAATTAAGAAG+AGG - chr4_1:83553393-83553412 None:intergenic 35.0%
TCGAGAAGGCCAAAAATTAA+AGG - chr4_1:83553467-83553486 None:intergenic 35.0%
GCAAATGTCAATGAAATCGT+AGG + chr4_1:83553505-83553524 Msa0578890:intron 35.0%
TGATTTATCATGTAGACTCC+TGG + chr4_1:83553694-83553713 Msa0578890:intron 35.0%
!! ACTCCTGGTGAATTGATTTT+TGG + chr4_1:83553709-83553728 Msa0578890:intron 35.0%
!!! GATTTTTGGCTGTTTTCTCT+TGG + chr4_1:83553723-83553742 Msa0578890:intron 35.0%
TGCGATTAGGATTTGACAAA+AGG + chr4_1:83553884-83553903 Msa0578890:intron 35.0%
TATCAGCAAAAGAGACGTAT+TGG + chr4_1:83553935-83553954 Msa0578890:CDS 35.0%
AATTATGAGTGCTTCATCTG+GGG + chr4_1:83553967-83553986 Msa0578890:CDS 35.0%
!!! CCTAAGACTAGTCTTTTTTG+AGG - chr4_1:83554201-83554220 None:intergenic 35.0%
!! CCTCAAAAAAGACTAGTCTT+AGG + chr4_1:83554198-83554217 Msa0578890:intron 35.0%
TAGAACCCCATTGAAGAATA+GGG - chr4_1:83554239-83554258 None:intergenic 35.0%
TTAGAACCCCATTGAAGAAT+AGG - chr4_1:83554240-83554259 None:intergenic 35.0%
CAATAGTAAGACCAGAAACA+AGG - chr4_1:83554290-83554309 None:intergenic 35.0%
CATAGAATTTGACAAACCTG+TGG - chr4_1:83554327-83554346 None:intergenic 35.0%
TTACATAGTCCAACAATTGG+AGG - chr4_1:83554469-83554488 None:intergenic 35.0%
CACTTACATAGTCCAACAAT+TGG - chr4_1:83554472-83554491 None:intergenic 35.0%
AGAACAGCATAAATAAGTGG+AGG - chr4_1:83554582-83554601 None:intergenic 35.0%
CCAAGAACAGCATAAATAAG+TGG - chr4_1:83554585-83554604 None:intergenic 35.0%
CCACTTATTTATGCTGTTCT+TGG + chr4_1:83554582-83554601 Msa0578890:CDS 35.0%
ACAAGTGAAGCAATAGAAAC+AGG - chr4_1:83554633-83554652 None:intergenic 35.0%
!!! CTTACTTCAACCTTTTTTGC+TGG + chr4_1:83554720-83554739 Msa0578890:CDS 35.0%
AAGCTTCACTAGGAATTCTA+AGG + chr4_1:83554751-83554770 Msa0578890:CDS 35.0%
ATCTTAATTGGATTCATGGC+TGG + chr4_1:83554906-83554925 Msa0578890:CDS 35.0%
CAACAACTTAAGAGCTTACT+TGG + chr4_1:83554951-83554970 Msa0578890:CDS 35.0%
TGGAAAACAGAACTCATAAC+AGG - chr4_1:83555011-83555030 None:intergenic 35.0%
AGCATGGCACATATGTATAA+GGG - chr4_1:83555098-83555117 None:intergenic 35.0%
TAGCATGGCACATATGTATA+AGG - chr4_1:83555099-83555118 None:intergenic 35.0%
! TGAATTTAGCTCAGTTGGTA+AGG + chr4_1:83555144-83555163 Msa0578890:intron 35.0%
ATTATGAATGTGTCAGTGTG+TGG - chr4_1:83555229-83555248 None:intergenic 35.0%
TCATGGCAAACAATAGTGAT+GGG + chr4_1:83555351-83555370 Msa0578890:CDS 35.0%
! GCCCTTTCCTATTTCTTAAA+GGG - chr4_1:83555548-83555567 None:intergenic 35.0%
AGTAAAAGTCGAAACGGAAA+TGG - chr4_1:83555876-83555895 None:intergenic 35.0%
! TCACATGAGAGTATGTTTAG+AGG + chr4_1:83556270-83556289 Msa0578890:intron 35.0%
! CACATGAGAGTATGTTTAGA+GGG + chr4_1:83556271-83556290 Msa0578890:intron 35.0%
GAGTATATCAGTCAAAAACG+AGG + chr4_1:83556323-83556342 Msa0578890:intron 35.0%
ATATCAGTCAAAAACGAGGT+TGG + chr4_1:83556327-83556346 Msa0578890:intron 35.0%
CGTTAATTGCTCTGTCAAAA+TGG + chr4_1:83556366-83556385 Msa0578890:intron 35.0%
CAGCCCATAGTTCTTAAAAA+CGG - chr4_1:83556397-83556416 None:intergenic 35.0%
!!! AAAGCTAAAATCGCCGATTT+TGG + chr4_1:83557156-83557175 Msa0578890:intron 35.0%
ATAGATCTAGGGACCAAAAT+CGG - chr4_1:83557172-83557191 None:intergenic 35.0%
TGGTCCCTAGATCTATTTAA+TGG + chr4_1:83557176-83557195 Msa0578890:intron 35.0%
CCCTAGATCTATTTAATGGT+AGG + chr4_1:83557180-83557199 Msa0578890:intron 35.0%
TGTGTCTTGCAAATGTCATA+AGG - chr4_1:83557743-83557762 None:intergenic 35.0%
ATAGTAGCTAGAATTTCACC+CGG + chr4_1:83557986-83558005 Msa0578890:intron 35.0%
GAGATTATGACACACATAAG+AGG - chr4_1:83558484-83558503 None:intergenic 35.0%
! TCTTCTGTGTTTTGCAATCA+AGG + chr4_1:83558507-83558526 Msa0578890:CDS 35.0%
AAATTTCATGGAAGTCACCT+TGG + chr4_1:83558735-83558754 Msa0578890:CDS 35.0%
CGCTTCCAAAAATAATGAGA+GGG - chr4_1:83558829-83558848 None:intergenic 35.0%
GATATTTATGCGTGCATAGT+AGG + chr4_1:83558878-83558897 Msa0578890:intron 35.0%
!! GTCAAATACACTAGTCTTCT+CGG - chr4_1:83559226-83559245 None:intergenic 35.0%
AGACTAGTGTATTTGACTCA+TGG + chr4_1:83559229-83559248 Msa0578890:intron 35.0%
TCAGCTGTTAATAACAATGC+AGG + chr4_1:83559309-83559328 Msa0578890:CDS 35.0%
GGAACAATGGCATAAGAAAA+AGG - chr4_1:83559389-83559408 None:intergenic 35.0%
TTAGGTGTGTATTGGAACAA+TGG - chr4_1:83559402-83559421 None:intergenic 35.0%
AAAAACGACTCCAAAGAAAG+CGG - chr4_1:83559532-83559551 None:intergenic 35.0%
! GTTTTTATCTCAGTCCAGTT+AGG + chr4_1:83559546-83559565 Msa0578890:CDS 35.0%
GTCATCTCTTGTCAATCAAA+AGG - chr4_1:83559666-83559685 None:intergenic 35.0%
AGATGACAATGCTATTGATC+AGG + chr4_1:83559679-83559698 Msa0578890:intron 35.0%
!! TTTTAGGCCTTGTAATTTGC+AGG - chr4_1:83559730-83559749 None:intergenic 35.0%
AAGGCCTAAAACAGTAATGA+TGG + chr4_1:83559739-83559758 Msa0578890:CDS 35.0%
AGGCCTAAAACAGTAATGAT+GGG + chr4_1:83559740-83559759 Msa0578890:CDS 35.0%
! TTCCCCATCATTACTGTTTT+AGG - chr4_1:83559746-83559765 None:intergenic 35.0%
! TAATGATGGGGAATATACCA+GGG + chr4_1:83559753-83559772 Msa0578890:CDS 35.0%
TTTCTATATATGTCTGTCCC+TGG - chr4_1:83559773-83559792 None:intergenic 35.0%
ATGCTCAAAATAAGAAAGCC+TGG - chr4_1:83559827-83559846 None:intergenic 35.0%
ACATCACATATCTCAATGAC+AGG + chr4_1:83559870-83559889 Msa0578890:CDS 35.0%
! ACTCTTCTAAGTGTTATTGC+TGG + chr4_1:83560212-83560231 Msa0578890:intron 35.0%
! TCTAAGTGTTATTGCTGGAA+TGG + chr4_1:83560217-83560236 Msa0578890:intron 35.0%
!! AAGTGGAATCTCACTTTTCA+AGG + chr4_1:83560377-83560396 Msa0578890:CDS 35.0%
CAAGGAGTTAAAAGCAACAA+TGG + chr4_1:83560395-83560414 Msa0578890:CDS 35.0%
AAAGCAACAATGGAAAAGAG+GGG + chr4_1:83560405-83560424 Msa0578890:CDS 35.0%
! TTTCAGCTTTTCTATGACCT+CGG - chr4_1:83560562-83560581 None:intergenic 35.0%
TGATTCCTTTGTGGTGTGAT+GGG - chr4_1:83552040-83552059 None:intergenic 40.0%
TACCACTTCTGATTCCTTTG+TGG - chr4_1:83552049-83552068 None:intergenic 40.0%
!! TCAGAAGTGGTAGTGTTGAT+CGG + chr4_1:83552057-83552076 Msa0578890:five_prime_UTR 40.0%
!! GTAGTGTTGATCGGAGAAAA+TGG + chr4_1:83552066-83552085 Msa0578890:exon 40.0%
TCAATCTCTTCCTCTTCATG+TGG + chr4_1:83552174-83552193 Msa0578890:CDS 40.0%
!! ATTTTACAGGTGTCACGTGT+AGG - chr4_1:83552494-83552513 None:intergenic 40.0%
ATGCTTTCCATCAGAAACGT+CGG + chr4_1:83552574-83552593 Msa0578890:intron 40.0%
CACTTAAGTGTTACAGTGCT+AGG + chr4_1:83552734-83552753 Msa0578890:intron 40.0%
! TTTTGCGTGCTTAATTGGCA+TGG + chr4_1:83552902-83552921 Msa0578890:intron 40.0%
! GGTTCTGGTAAAACAAGGTA+AGG + chr4_1:83553071-83553090 Msa0578890:intron 40.0%
!! GGATGTGGTTTGTTGAAGAA+AGG + chr4_1:83553132-83553151 Msa0578890:intron 40.0%
! GAAAAGGTGGCATCTGTTTT+TGG + chr4_1:83553220-83553239 Msa0578890:CDS 40.0%
CGGGATTGTTAATTACTCGT+TGG + chr4_1:83553578-83553597 Msa0578890:intron 40.0%
TATCACAGGATCCAAGAAGA+CGG - chr4_1:83553604-83553623 None:intergenic 40.0%
CAGCCAAAAATCAATTCACC+AGG - chr4_1:83553715-83553734 None:intergenic 40.0%
AATTTGACAAACCTGTGGGA+TGG - chr4_1:83554322-83554341 None:intergenic 40.0%
GCAAATCTTCCTCCAATTGT+TGG + chr4_1:83554457-83554476 Msa0578890:CDS 40.0%
GCTAGTTGAAGAAACAGAAC+AGG - chr4_1:83554699-83554718 None:intergenic 40.0%
GGTCTATTTCAAGCTTCACT+AGG + chr4_1:83554741-83554760 Msa0578890:CDS 40.0%
! TCTCGTGAATTTAGCTCAGT+TGG + chr4_1:83555139-83555158 Msa0578890:intron 40.0%
AAGGTTCAGAGTTCAAACCT+CGG + chr4_1:83555185-83555204 Msa0578890:intron 40.0%
!!! GTTTTTTTGTGCAGTGGTCA+TGG + chr4_1:83555334-83555353 Msa0578890:intron 40.0%
GTCATGGCAAACAATAGTGA+TGG + chr4_1:83555350-83555369 Msa0578890:CDS 40.0%
! AGTGATGGGAATTTGCTTCT+TGG + chr4_1:83555365-83555384 Msa0578890:CDS 40.0%
TACACGCAGAAAATGGACAA+GGG - chr4_1:83555519-83555538 None:intergenic 40.0%
TTACACGCAGAAAATGGACA+AGG - chr4_1:83555520-83555539 None:intergenic 40.0%
GTATGCTTACACGCAGAAAA+TGG - chr4_1:83555526-83555545 None:intergenic 40.0%
! GGCCCTTTCCTATTTCTTAA+AGG - chr4_1:83555549-83555568 None:intergenic 40.0%
!! AAAACGAGGTTGGCTTGATT+TGG + chr4_1:83556337-83556356 Msa0578890:intron 40.0%
!! CGTTTTTAAGAACTATGGGC+TGG + chr4_1:83556395-83556414 Msa0578890:intron 40.0%
CTGGTTCAAGTCAAGTTTCA+AGG + chr4_1:83556414-83556433 Msa0578890:intron 40.0%
GTTCAAGTCAAGTTTCAAGG+TGG + chr4_1:83556417-83556436 Msa0578890:intron 40.0%
!! TCATTTTGGAGGTCAGACAA+AGG + chr4_1:83557213-83557232 Msa0578890:intron 40.0%
! GATTTTGGGCCTGTTTGTTT+TGG - chr4_1:83557565-83557584 None:intergenic 40.0%
ATAAATGCATGCAGAGCATG+AGG + chr4_1:83558425-83558444 Msa0578890:intron 40.0%
TGAGGAAACCAAAGCTATTC+TGG + chr4_1:83558443-83558462 Msa0578890:CDS 40.0%
GAGGAAACCAAAGCTATTCT+GGG + chr4_1:83558444-83558463 Msa0578890:CDS 40.0%
GCAATCAAGGCTCAAAATCA+TGG + chr4_1:83558520-83558539 Msa0578890:CDS 40.0%
TTCTGATGTGGTTCCTAGAT+TGG + chr4_1:83558669-83558688 Msa0578890:intron 40.0%
GTGAAAACTGGCATTATCAC+TGG + chr4_1:83558765-83558784 Msa0578890:CDS 40.0%
GCGCTTCCAAAAATAATGAG+AGG - chr4_1:83558830-83558849 None:intergenic 40.0%
!! AAACAGGAAGGTATTGCAGT+AGG + chr4_1:83558950-83558969 Msa0578890:intron 40.0%
ATTGGGTGTATGAATGTGGT+TGG + chr4_1:83559031-83559050 Msa0578890:CDS 40.0%
TGTTACATAGCAGGAAGTGA+AGG - chr4_1:83559059-83559078 None:intergenic 40.0%
ACTTCCTGCTATGTAACAAC+AGG + chr4_1:83559061-83559080 Msa0578890:CDS 40.0%
AGAACCTGTTGTTACATAGC+AGG - chr4_1:83559068-83559087 None:intergenic 40.0%
ATTGCGCCCAATACAACATT+AGG - chr4_1:83559420-83559439 None:intergenic 40.0%
ATCATAGTCACAGCAGTGAT+TGG + chr4_1:83559438-83559457 Msa0578890:CDS 40.0%
AGAAAGCGGTTAACATCACA+AGG - chr4_1:83559518-83559537 None:intergenic 40.0%
GTGATGTTAACCGCTTTCTT+TGG + chr4_1:83559519-83559538 Msa0578890:CDS 40.0%
GACAATGCTATTGATCAGGT+TGG + chr4_1:83559683-83559702 Msa0578890:intron 40.0%
GGATACTCCTGCAAATTACA+AGG + chr4_1:83559720-83559739 Msa0578890:CDS 40.0%
GGCCTAAAACAGTAATGATG+GGG + chr4_1:83559741-83559760 Msa0578890:CDS 40.0%
! GTAATGATGGGGAATATACC+AGG + chr4_1:83559752-83559771 Msa0578890:CDS 40.0%
ATCATATTAGGACGCTACGA+TGG + chr4_1:83559984-83560003 Msa0578890:intron 40.0%
!! ACGATGGATTGAAGAAGAAG+AGG + chr4_1:83560000-83560019 Msa0578890:CDS 40.0%
! ACACTCAAGCCTTCGATTTT+TGG + chr4_1:83560039-83560058 Msa0578890:CDS 40.0%
TTTCCAGGACCAAAAATCGA+AGG - chr4_1:83560051-83560070 None:intergenic 40.0%
!! TTTTTGGTCCTGGAAATGTC+AGG + chr4_1:83560055-83560074 Msa0578890:CDS 40.0%
ACACATTACCTGACATTTCC+AGG - chr4_1:83560066-83560085 None:intergenic 40.0%
! AAGTGTTATTGCTGGAATGG+TGG + chr4_1:83560220-83560239 Msa0578890:intron 40.0%
TGAGATTCCACTTGTGTCAA+TGG - chr4_1:83560370-83560389 None:intergenic 40.0%
TGTATTCTGACAGCTTGTGT+TGG + chr4_1:83560524-83560543 Msa0578890:intron 40.0%
! GACAACCTTTTCTTGACAGT+TGG + chr4_1:83560615-83560634 Msa0578890:CDS 40.0%
GTGTGGAGTGTGATGTGAAA+TGG - chr4_1:83551998-83552017 None:intergenic 45.0%
CTGATTCCTTTGTGGTGTGA+TGG - chr4_1:83552041-83552060 None:intergenic 45.0%
CACCACAAAGGAATCAGAAG+TGG + chr4_1:83552044-83552063 Msa0578890:five_prime_UTR 45.0%
! GTTCAGCGTGTTTTCCATGA+AGG + chr4_1:83552100-83552119 Msa0578890:CDS 45.0%
GATATCACATGTGTCCGTGT+CGG + chr4_1:83552542-83552561 Msa0578890:intron 45.0%
TGCTTAATTGGCATGGTCCA+TGG + chr4_1:83552909-83552928 Msa0578890:intron 45.0%
! CCTTTTTCTCTCGGAGTTCT+TGG - chr4_1:83553016-83553035 None:intergenic 45.0%
CCAAGAACTCCGAGAGAAAA+AGG + chr4_1:83553013-83553032 Msa0578890:CDS 45.0%
GAACTCCGAGAGAAAAAGGA+TGG + chr4_1:83553017-83553036 Msa0578890:CDS 45.0%
! CAAGGCCATCCTTTTTCTCT+CGG - chr4_1:83553025-83553044 None:intergenic 45.0%
!! AAGGATGGCCTTGTTACAGT+TGG + chr4_1:83553032-83553051 Msa0578890:CDS 45.0%
CACCAATGCCAACTGTAACA+AGG - chr4_1:83553043-83553062 None:intergenic 45.0%
! CTTGTTACAGTTGGCATTGG+TGG + chr4_1:83553041-83553060 Msa0578890:CDS 45.0%
!!! CTTGTTTTACCAGAACCGCT+CGG - chr4_1:83553068-83553087 None:intergenic 45.0%
! AAAGGTGTGTGTTGTTGCCT+TGG + chr4_1:83553150-83553169 Msa0578890:intron 45.0%
!! AGTTGATGAAGGGAACGTTC+TGG + chr4_1:83553279-83553298 Msa0578890:CDS 45.0%
TGTGCGTTCATCAGTTTCCA+AGG + chr4_1:83553412-83553431 Msa0578890:intron 45.0%
!! GGGTTAGTCATTATCAGCCT+TGG - chr4_1:83553432-83553451 None:intergenic 45.0%
!! CTTATAGGCGGACTAGTGTA+TGG + chr4_1:83553784-83553803 Msa0578890:intron 45.0%
CTGTCTTCTATGCTGCGATT+AGG + chr4_1:83553871-83553890 Msa0578890:intron 45.0%
TGGAGGAAGATTTGCAAGCT+TGG - chr4_1:83554452-83554471 None:intergenic 45.0%
ATGCTGTTCTTGGAAGCTCA+AGG + chr4_1:83554592-83554611 Msa0578890:CDS 45.0%
TGCTGTTCTTGGAAGCTCAA+GGG + chr4_1:83554593-83554612 Msa0578890:CDS 45.0%
AACAGAACAGGTTCTGCTGA+AGG - chr4_1:83554687-83554706 None:intergenic 45.0%
TGACACAGTTTGATCAACCC+TGG + chr4_1:83555650-83555669 Msa0578890:intron 45.0%
GACACAGTTTGATCAACCCT+GGG + chr4_1:83555651-83555670 Msa0578890:intron 45.0%
! AGGACAAGCGGTTTGAGTTT+GGG - chr4_1:83555692-83555711 None:intergenic 45.0%
! TAGGACAAGCGGTTTGAGTT+TGG - chr4_1:83555693-83555712 None:intergenic 45.0%
GTATAGCATGAATACGGGCA+TGG - chr4_1:83555804-83555823 None:intergenic 45.0%
AGGGATTGAAGTTCGAACTC+CGG - chr4_1:83558008-83558027 None:intergenic 45.0%
! CAGTTTTCACGACTAGACCA+AGG - chr4_1:83558755-83558774 None:intergenic 45.0%
CTTGGTCTAGTCGTGAAAAC+TGG + chr4_1:83558753-83558772 Msa0578890:CDS 45.0%
!! AGGAAGGTATTGCAGTAGGA+AGG + chr4_1:83558954-83558973 Msa0578890:intron 45.0%
!! AGCTCTGGGAAACTACAAAG+TGG + chr4_1:83558985-83559004 Msa0578890:CDS 45.0%
CTGGGAAACTACAAAGTGGA+TGG + chr4_1:83558989-83559008 Msa0578890:CDS 45.0%
GGCAATTGGGTGTATGAATG+TGG + chr4_1:83559027-83559046 Msa0578890:CDS 45.0%
AGTAATGTCCGTGACAGTGA+TGG + chr4_1:83559356-83559375 Msa0578890:CDS 45.0%
GTCTATCTTCCAAATGTGGC+AGG - chr4_1:83559484-83559503 None:intergenic 45.0%
ATGAACTCACTGCAACAGCA+AGG - chr4_1:83559572-83559591 None:intergenic 45.0%
AGGGAAGCTACAAGAATACC+AGG + chr4_1:83559806-83559825 Msa0578890:CDS 45.0%
!!! AAGCCTTCGATTTTTGGTCC+TGG + chr4_1:83560045-83560064 Msa0578890:CDS 45.0%
!! AATGGAAAAGAGGGGTGTTG+AGG + chr4_1:83560413-83560432 Msa0578890:intron 45.0%
! TTTTCTATGACCTCGGCAAG+AGG - chr4_1:83560555-83560574 None:intergenic 45.0%
CCTCTCCAACTGTCAAGAAA+AGG - chr4_1:83560623-83560642 None:intergenic 45.0%
! CCTTTTCTTGACAGTTGGAG+AGG + chr4_1:83560620-83560639 Msa0578890:CDS 45.0%
TGTATGTGCTTCTTCCGTCT+TGG - chr4_1:83560685-83560704 None:intergenic 45.0%
!!! ATAACTTTTTATTATTATTT+TGG + chr4_1:83556073-83556092 Msa0578890:intron 5.0%
!! TTAAAAATAAAAAAAAAGAT+AGG - chr4_1:83556787-83556806 None:intergenic 5.0%
!!! CTTTTTTTTTATTTTTAAAA+AGG + chr4_1:83556789-83556808 Msa0578890:intron 5.0%
!! TTTATTAAAAAAAAAAAAAC+AGG + chr4_1:83558934-83558953 Msa0578890:intron 5.0%
GGTGAGAGAGGAATCTTGTG+TGG - chr4_1:83552015-83552034 None:intergenic 50.0%
ACCATCCCATCACACCACAA+AGG + chr4_1:83552032-83552051 Msa0578890:five_prime_UTR 50.0%
! TCCTTTGTGGTGTGATGGGA+TGG - chr4_1:83552036-83552055 None:intergenic 50.0%
! CAGCGTGTTTTCCATGAAGG+TGG + chr4_1:83552103-83552122 Msa0578890:CDS 50.0%
AGTAATCGCGTCCACCTTCA+TGG - chr4_1:83552117-83552136 None:intergenic 50.0%
AGCATGTCCAATCTCCGACA+CGG - chr4_1:83552559-83552578 None:intergenic 50.0%
!! TACAGCACCGACGTTTCTGA+TGG - chr4_1:83552584-83552603 None:intergenic 50.0%
!! GGCCTTGTTACAGTTGGCAT+TGG + chr4_1:83553038-83553057 Msa0578890:CDS 50.0%
! CGAGCGGTTCTGGTAAAACA+AGG + chr4_1:83553066-83553085 Msa0578890:CDS 50.0%
ACTGATGAACGCACAAACCG+TGG - chr4_1:83553407-83553426 None:intergenic 50.0%
TTACTCGTTGGCCGTCTTCT+TGG + chr4_1:83553590-83553609 Msa0578890:intron 50.0%
TATGAGTGCTTCATCTGGGG+TGG + chr4_1:83553970-83553989 Msa0578890:CDS 50.0%
AGCTCAAGGGATCTAGCAGT+AGG + chr4_1:83554606-83554625 Msa0578890:CDS 50.0%
! TGTGTCAGTGTGTAGCTCTG+AGG - chr4_1:83555637-83555656 None:intergenic 50.0%
GTCAGTGAATGAACGTCCCA+GGG - chr4_1:83555670-83555689 None:intergenic 50.0%
GTCACTGTCTATGTCGTGTC+TGG + chr4_1:83555775-83555794 Msa0578890:intron 50.0%
GGGATTGAAGTTCGAACTCC+GGG - chr4_1:83558007-83558026 None:intergenic 50.0%
CTTCTCTGGCACAGAGTACA+TGG + chr4_1:83558368-83558387 Msa0578890:intron 50.0%
GCAGAGACCCAGAATAGCTT+TGG - chr4_1:83558454-83558473 None:intergenic 50.0%
AAGCTATTCTGGGTCTCTGC+TGG + chr4_1:83558454-83558473 Msa0578890:CDS 50.0%
AGGAAGGACATTTGCAGCTC+TGG + chr4_1:83558970-83558989 Msa0578890:CDS 50.0%
GGAAGGACATTTGCAGCTCT+GGG + chr4_1:83558971-83558990 Msa0578890:CDS 50.0%
GAGTGTCACCATCACTGTCA+CGG - chr4_1:83559367-83559386 None:intergenic 50.0%
!! AAAAGAGGGGTGTTGAGGCA+AGG + chr4_1:83560418-83560437 Msa0578890:intron 50.0%
GAAGAGCCAGTCAACCAAGA+CGG + chr4_1:83560668-83560687 Msa0578890:CDS 50.0%
CTTCTTCCGTCTTGGTTGAC+TGG - chr4_1:83560677-83560696 None:intergenic 50.0%
! GTGTGATGGGATGGTGAGAG+AGG - chr4_1:83552027-83552046 None:intergenic 55.0%
CATGTGTCCGTGTCGGAGAT+TGG + chr4_1:83552549-83552568 Msa0578890:intron 55.0%
! CACTTGAGGTGCTTGCTCAG+TGG - chr4_1:83552766-83552785 None:intergenic 55.0%
! TGCTAGCTTAGCCATCCCAC+AGG + chr4_1:83554308-83554327 Msa0578890:intron 55.0%
GGTCAGTGAATGAACGTCCC+AGG - chr4_1:83555671-83555690 None:intergenic 55.0%
! TGAGTTGGAGACGAGAGCAG+TGG - chr4_1:83558561-83558580 None:intergenic 55.0%
AGGCAGCGGGGATATCAATG+AGG - chr4_1:83559464-83559483 None:intergenic 55.0%
TTCCAAATGTGGCAGGCAGC+GGG - chr4_1:83559477-83559496 None:intergenic 55.0%
CTTCCAAATGTGGCAGGCAG+CGG - chr4_1:83559478-83559497 None:intergenic 55.0%
CTGCAACAGCAAGGCCTAAC+TGG - chr4_1:83559563-83559582 None:intergenic 55.0%
TGCTGGAATGGTGGCACCTA+TGG + chr4_1:83560229-83560248 Msa0578890:intron 55.0%
GTGAGCGCCATTGACACAAG+TGG + chr4_1:83560360-83560379 Msa0578890:CDS 55.0%
! GTTGGTGAATCCTCTTGCCG+AGG + chr4_1:83560542-83560561 Msa0578890:CDS 55.0%
CTTGACAGTTGGAGAGGCTG+TGG + chr4_1:83560626-83560645 Msa0578890:CDS 55.0%
!! GTTGGCATTGGTGGTCCGAG+CGG + chr4_1:83553050-83553069 Msa0578890:CDS 60.0%
! ATTGGTGGTCCGAGCGGTTC+TGG + chr4_1:83553056-83553075 Msa0578890:CDS 60.0%
TCCAAATGTGGCAGGCAGCG+GGG - chr4_1:83559476-83559495 None:intergenic 60.0%
TCCCCGCTGCCTGCCACATT+TGG + chr4_1:83559472-83559491 Msa0578890:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83551856 83561044 83551856 ID=Msa0578890;Name=Msa0578890
chr4_1 mRNA 83551856 83561044 83551856 ID=Msa0578890-mRNA-1;Parent=Msa0578890;Name=Msa0578890-mRNA-1;_AED=0.32;_eAED=0.32;_QI=229|0.68|0.76|1|1|1|17|322|717
chr4_1 exon 83551856 83552195 83551856 ID=Msa0578890-mRNA-1:exon:30434;Parent=Msa0578890-mRNA-1
chr4_1 exon 83552975 83553087 83552975 ID=Msa0578890-mRNA-1:exon:30435;Parent=Msa0578890-mRNA-1
chr4_1 exon 83553213 83553339 83553213 ID=Msa0578890-mRNA-1:exon:30436;Parent=Msa0578890-mRNA-1
chr4_1 exon 83553893 83553991 83553893 ID=Msa0578890-mRNA-1:exon:30437;Parent=Msa0578890-mRNA-1
chr4_1 exon 83554436 83554484 83554436 ID=Msa0578890-mRNA-1:exon:30438;Parent=Msa0578890-mRNA-1
chr4_1 exon 83554565 83554772 83554565 ID=Msa0578890-mRNA-1:exon:30439;Parent=Msa0578890-mRNA-1
chr4_1 exon 83554872 83555017 83554872 ID=Msa0578890-mRNA-1:exon:30440;Parent=Msa0578890-mRNA-1
chr4_1 exon 83555348 83555413 83555348 ID=Msa0578890-mRNA-1:exon:30441;Parent=Msa0578890-mRNA-1
chr4_1 exon 83555477 83555535 83555477 ID=Msa0578890-mRNA-1:exon:30442;Parent=Msa0578890-mRNA-1
chr4_1 exon 83558439 83558552 83558439 ID=Msa0578890-mRNA-1:exon:30443;Parent=Msa0578890-mRNA-1
chr4_1 exon 83558687 83558803 83558687 ID=Msa0578890-mRNA-1:exon:30444;Parent=Msa0578890-mRNA-1
chr4_1 exon 83558956 83559082 83558956 ID=Msa0578890-mRNA-1:exon:30445;Parent=Msa0578890-mRNA-1
chr4_1 exon 83559295 83559581 83559295 ID=Msa0578890-mRNA-1:exon:30446;Parent=Msa0578890-mRNA-1
chr4_1 exon 83559701 83559891 83559701 ID=Msa0578890-mRNA-1:exon:30447;Parent=Msa0578890-mRNA-1
chr4_1 exon 83559994 83560076 83559994 ID=Msa0578890-mRNA-1:exon:30448;Parent=Msa0578890-mRNA-1
chr4_1 exon 83560358 83560428 83560358 ID=Msa0578890-mRNA-1:exon:30449;Parent=Msa0578890-mRNA-1
chr4_1 exon 83560537 83561044 83560537 ID=Msa0578890-mRNA-1:exon:30450;Parent=Msa0578890-mRNA-1
chr4_1 five_prime_UTR 83551856 83552084 83551856 ID=Msa0578890-mRNA-1:five_prime_utr;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83552085 83552195 83552085 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83552975 83553087 83552975 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83553213 83553339 83553213 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83553893 83553991 83553893 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83554436 83554484 83554436 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83554565 83554772 83554565 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83554872 83555017 83554872 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83555348 83555413 83555348 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83555477 83555535 83555477 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83558439 83558552 83558439 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83558687 83558803 83558687 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83558956 83559082 83558956 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83559295 83559581 83559295 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83559701 83559891 83559701 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83559994 83560076 83559994 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83560358 83560428 83560358 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 CDS 83560537 83560722 83560537 ID=Msa0578890-mRNA-1:cds;Parent=Msa0578890-mRNA-1
chr4_1 three_prime_UTR 83560723 83561044 83560723 ID=Msa0578890-mRNA-1:three_prime_utr;Parent=Msa0578890-mRNA-1
Gene Sequence

>Msa0578890

ATGGATGATGAAGTTGTTCAGCGTGTTTTCCATGAAGGTGGACGCGATTACTTTCAACAACAACCTTCAACTTCTTCTTCATCGATTCTTCAATCTCTTCCTCTTCATGTGTCTTTTGATCATGGATATTATTTATTGGTGAAATCTATCCAAGAACTCCGAGAGAAAAAGGATGGCCTTGTTACAGTTGGCATTGGTGGTCCGAGCGGTTCTGGTAAAACAAGCTTAACAGAAAAGGTGGCATCTGTTTTTGGTTGTACTGTTATATCAATGGAGAATTATTGTGATGGAGTTGATGAAGGGAACGTTCTGGATTCTATAGATTTTGGTACCTTGATCAAGAATCTTGAGGATTTGACAAAAGGCGATGATACTTTAATTCCAGAGTTTGATTATCAGCAAAAGAGACGTATTGGATATAAAAAAATTATGAGTGCTTCATCTGGGGTGGGAATTAGTTATGCCAAGCTTGCAAATCTTCCTCCAATTGTTGGACTATATTCTAGTTTTGTTCCTCCACTTATTTATGCTGTTCTTGGAAGCTCAAGGGATCTAGCAGTAGGACCTGTTTCTATTGCTTCACTTGTTTTAGGATCTATGCTTAGACAAGAAGTGTCTCCTTCAGCAGAACCTGTTCTGTTTCTTCAACTAGCTCTTACTTCAACCTTTTTTGCTGGTCTATTTCAAGCTTCACTAGGAATTCTAAGGCTAGGATTTATCATTGATTTTTTATCCAAAGCAATCTTAATTGGATTCATGGCTGGAGCTGCTATAATTGTGTCTTTGCAACAACTTAAGAGCTTACTTGGAATCACACATTTCACTCAACAAATGAGTCTTGTTCCTGTTATGATGGTCATGGCAAACAATAGTGATGGGAATTTGCTTCTTGGTGCTACTACTAATAGCAAGACACGTTTTACTAGAATAGTAGAATTTTCTTTCTACAATCTCATGGCCCTTGTCCATTTTCTGCGTAGCATGAGGAAACCAAAGCTATTCTGGGTCTCTGCTGGAGCTCCTCTTATGTGTGTCATAATCTCTACTCTTCTGTGTTTTGCAATCAAGGCTCAAAATCATGGCATCAGTTTAATTGGAAAATTGCATGAAGGAATAAATCCTTCTTCATGGAATATGTTGAAATTTCATGGAAGTCACCTTGGTCTAGTCGTGAAAACTGGCATTATCACTGGCATTTTGTCCCTCACTGAAGGTATTGCAGTAGGAAGGACATTTGCAGCTCTGGGAAACTACAAAGTGGATGGAAATAAAGAAATGATGGCAATTGGGTGTATGAATGTGGTTGGATCCTTCACTTCCTGCTATGTAACAACAGGTGCTTTCTCTCGTTCAGCTGTTAATAACAATGCAGGAGCAAAAACAGCAGCTTCGAATATAGTAATGTCCGTGACAGTGATGGTGACACTCCTTTTTCTTATGCCATTGTTCCAATACACACCTAATGTTGTATTGGGCGCAATCATAGTCACAGCAGTGATTGGCCTCATTGATATCCCCGCTGCCTGCCACATTTGGAAGATAGACAAATTCGACTTCCTTGTGATGTTAACCGCTTTCTTTGGAGTCGTTTTTATCTCAGTCCAGTTAGGCCTTGCTGTTGCAGTTGGATTATCAACTTTTAGGATACTCCTGCAAATTACAAGGCCTAAAACAGTAATGATGGGGAATATACCAGGGACAGACATATATAGAAATCTTCATCAATACAGGGAAGCTACAAGAATACCAGGCTTTCTTATTTTGAGCATTGAAGCTCCTATCAATTTTGCAAACATCACATATCTCAATGACAGGACGCTACGATGGATTGAAGAAGAAGAGGAAGATAACATAAAGGAACACTCAAGCCTTCGATTTTTGGTCCTGGAAATGTCAGCTGTGAGCGCCATTGACACAAGTGGAATCTCACTTTTCAAGGAGTTAAAAGCAACAATGGAAAAGAGGGGTCTTGTGTTGGTGAATCCTCTTGCCGAGGTCATAGAAAAGCTGAAAAAAGCAGACGAATCTAATACATTCATAAGAGCAGACAACCTTTTCTTGACAGTTGGAGAGGCTGTGGCTTCACTTTCATCAACAATGAAGAGCCAGTCAACCAAGACGGAAGAAGCACATACAATCGTGCCACATTACTGA
Protein sequence

>Msa0578890

MDDEVVQRVFHEGGRDYFQQQPSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLTEKVASVFGCTVISMENYCDGVDEGNVLDSIDFGTLIKNLEDLTKGDDTLIPEFDYQQKRRIGYKKIMSASSGVGISYAKLANLPPIVGLYSSFVPPLIYAVLGSSRDLAVGPVSIASLVLGSMLRQEVSPSAEPVLFLQLALTSTFFAGLFQASLGILRLGFIIDFLSKAILIGFMAGAAIIVSLQQLKSLLGITHFTQQMSLVPVMMVMANNSDGNLLLGATTNSKTRFTRIVEFSFYNLMALVHFLRSMRKPKLFWVSAGAPLMCVIISTLLCFAIKAQNHGISLIGKLHEGINPSSWNMLKFHGSHLGLVVKTGIITGILSLTEGIAVGRTFAALGNYKVDGNKEMMAIGCMNVVGSFTSCYVTTGAFSRSAVNNNAGAKTAASNIVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDIPAACHIWKIDKFDFLVMLTAFFGVVFISVQLGLAVAVGLSTFRILLQITRPKTVMMGNIPGTDIYRNLHQYREATRIPGFLILSIEAPINFANITYLNDRTLRWIEEEEEDNIKEHSSLRFLVLEMSAVSAIDTSGISLFKELKATMEKRGLVLVNPLAEVIEKLKKADESNTFIRADNLFLTVGEAVASLSSTMKSQSTKTEEAHTIVPHY*