AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137650 MtrunA17_Chr1g0209941 83.465 127 14 1 75 201 1 120 4.62e-64 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 281 sgRNAs with CRISPR-Local

Find 445 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCTTCTTTACTCTTAT+TGG 0.053181 1_3:+70239928 None:intergenic
GAAATTGTTTGGTATGATTT+TGG 0.159030 1_3:-70241942 Msa0137650:five_prime_UTR
TGATGAAATATTTGCTAAAT+TGG 0.179015 1_3:-70240106 Msa0137650:five_prime_UTR
CCTCAGCAACAACTGGAAAT+TGG 0.184680 1_3:+70239486 None:intergenic
CCTTTGTTGCTTAAATTAAA+AGG 0.212454 1_3:-70244281 Msa0137650:intron
ACAATGAAGAATGCAATTTA+AGG 0.220163 1_3:-70243181 Msa0137650:intron
AAAACGAAGACAGAAGAAAT+AGG 0.228648 1_3:-70239605 Msa0137650:CDS
TATTCCAACTCTCGTCGTTT+TGG 0.232076 1_3:-70242280 Msa0137650:five_prime_UTR
CTGCTTGAGTGTTTCCAAAA+AGG 0.232278 1_3:-70238776 Msa0137650:intron
CACACCCACTTGATCAAGTT+TGG 0.234638 1_3:-70242346 Msa0137650:five_prime_UTR
GAGAAACTTGCTGTGGCTTT+TGG 0.240781 1_3:-70239976 Msa0137650:five_prime_UTR
TGCAATGGGGTTGAAGGATT+TGG 0.244184 1_3:-70241468 Msa0137650:five_prime_UTR
TGCTTCTCTCTCGTTCTCTT+TGG 0.247180 1_3:-70244903 Msa0137650:five_prime_UTR
CATGTCCATGCCATTAAGTT+TGG 0.256068 1_3:-70240825 Msa0137650:five_prime_UTR
CACCCCATCTTGTTGGAATA+TGG 0.256817 1_3:-70238923 Msa0137650:CDS
GCAATGGGGTTGAAGGATTT+GGG 0.266842 1_3:-70241467 Msa0137650:five_prime_UTR
TCTGCAACTCAATTCCTCTT+TGG 0.273641 1_3:-70244857 Msa0137650:five_prime_UTR
ATATCTCGCTACGTGCAAAA+TGG 0.279057 1_3:-70242193 Msa0137650:five_prime_UTR
AGCAGTTCTGTTGTCCCTTT+AGG 0.279145 1_3:-70239419 Msa0137650:CDS
GTTTCATAAAGAAGCGTTAT+TGG 0.283877 1_3:-70242170 Msa0137650:five_prime_UTR
TTCACCCAGACACTGTTTCT+TGG 0.285630 1_3:-70241619 Msa0137650:five_prime_UTR
GAAACAATGGAGGAAAAGTT+TGG 0.289969 1_3:-70240519 Msa0137650:five_prime_UTR
AACAGTCTGCTTGACACTTA+TGG 0.294021 1_3:-70241080 Msa0137650:five_prime_UTR
GACCAAGAAACAACCGTTCT+TGG 0.296022 1_3:+70242223 None:intergenic
AACCAAGAACGGTTGTTTCT+TGG 0.296522 1_3:-70242225 Msa0137650:five_prime_UTR
AACATGATCCATCTTTAAAA+TGG 0.299277 1_3:+70239815 None:intergenic
TGAAGCCGATGGATCCGTTT+GGG 0.305365 1_3:-70240397 Msa0137650:five_prime_UTR
CCCCTTTCACCCCATCTTGT+TGG 0.313908 1_3:-70238930 Msa0137650:CDS
GATTAAGAAAGATTTGAATA+TGG 0.314408 1_3:-70242074 Msa0137650:five_prime_UTR
TTGTTGTCAGAGATATTAAT+AGG 0.322395 1_3:-70239843 Msa0137650:five_prime_UTR
CTAGAATCACGGCTTTCTTT+TGG 0.323740 1_3:-70238810 Msa0137650:CDS
TGAATAAATTCCACATTTGA+TGG 0.325412 1_3:+70241118 None:intergenic
AATGAAGCTTGGACATGGTT+TGG 0.336736 1_3:-70241726 Msa0137650:five_prime_UTR
TTACATAACCTCAAACCTTC+GGG 0.337812 1_3:-70243510 Msa0137650:five_prime_UTR
CACTGATTTGCTTCCATTGT+TGG 0.341092 1_3:+70243556 None:intergenic
ATTAAGAAAGATTTGAATAT+GGG 0.342573 1_3:-70242073 Msa0137650:five_prime_UTR
TCAAGCAAAATGCGATTTGC+AGG 0.343043 1_3:+70244827 None:intergenic
AGACATAAATCCAAACTTAA+TGG 0.344040 1_3:+70240815 None:intergenic
CATGTTCCTGTGGTGATTAT+TGG 0.347157 1_3:-70239798 Msa0137650:five_prime_UTR
ACCTCAATCCAACTCATTCC+AGG 0.350883 1_3:+70240180 None:intergenic
TAACTTATTGCAAGTCTAAC+AGG 0.353344 1_3:+70243245 None:intergenic
TCTTCATGAGTATAATGATT+TGG 0.356057 1_3:-70241573 Msa0137650:five_prime_UTR
CATGCCATGACTGTGGTCTC+AGG 0.370654 1_3:-70242040 Msa0137650:five_prime_UTR
GAAAGGATCTTCATGGGAAT+TGG 0.372555 1_3:-70243882 Msa0137650:five_prime_UTR
ATTGATCTCCTTGGAAGATC+AGG 0.375292 1_3:-70240462 Msa0137650:five_prime_UTR
CATATTAACAAGAGAATTGC+TGG 0.375329 1_3:+70240782 None:intergenic
AGAGCGCACTTGGGAAGATT+TGG 0.379516 1_3:-70241018 Msa0137650:five_prime_UTR
TCTTGGAATGCAATTATTGC+TGG 0.379891 1_3:-70241602 Msa0137650:five_prime_UTR
GAACACTGACTAATGTAATA+TGG 0.381231 1_3:+70240592 None:intergenic
CTCAGCAACAACTGGAAATT+GGG 0.383215 1_3:+70239487 None:intergenic
AGTGATTCTAAGAAATTGTT+TGG 0.385080 1_3:-70241953 Msa0137650:five_prime_UTR
TACAATCAAATTGTAAGAAT+CGG 0.385838 1_3:+70239726 None:intergenic
ATTGAAAGGCTGTACTCATT+AGG 0.395146 1_3:+70241812 None:intergenic
GAATGCCTGTGCTGGATTGC+GGG 0.396818 1_3:-70241783 Msa0137650:five_prime_UTR
ACAAAAGACCATATTATTGC+AGG 0.398801 1_3:-70241314 Msa0137650:five_prime_UTR
AGGATACACACTTTCATTGT+TGG 0.399628 1_3:-70240150 Msa0137650:five_prime_UTR
ATCACTAAACTGCCCGCATT+TGG 0.407741 1_3:+70241970 None:intergenic
AGTGGAGCAATGGATGGATT+TGG 0.411220 1_3:-70238855 Msa0137650:CDS
CAACAATCCTCAGCAACAAC+TGG 0.411545 1_3:+70239479 None:intergenic
CTAGACCACACTGTCTCTTC+AGG 0.411696 1_3:-70239169 Msa0137650:CDS
TTGAAGCCGATGGATCCGTT+TGG 0.411782 1_3:-70240398 Msa0137650:five_prime_UTR
CTTACATAACCTCAAACCTT+CGG 0.415521 1_3:-70243511 Msa0137650:five_prime_UTR
TCAGATTTGTTTGTGGCTGT+TGG 0.418288 1_3:-70241404 Msa0137650:five_prime_UTR
GAGCATTCCCTGCAATAATA+TGG 0.419942 1_3:+70241306 None:intergenic
GAACTGTTGACAAAGTAGTT+TGG 0.423029 1_3:+70241198 None:intergenic
AAATGCTTGCGCAAACTTGT+CGG 0.423180 1_3:-70240871 Msa0137650:five_prime_UTR
GTCTCATGGTCTGCAATGAT+TGG 0.425040 1_3:-70240693 Msa0137650:five_prime_UTR
TCGTATCTAAGCTTGTTTCA+AGG 0.426541 1_3:-70239870 Msa0137650:five_prime_UTR
TTTACTCTTATTGGAGCTCC+AGG 0.432088 1_3:+70239937 None:intergenic
GAGGATATATAAATTTCATA+AGG 0.433257 1_3:-70243293 Msa0137650:five_prime_UTR
TGGAATAGAGTGTTAACAAA+TGG 0.434311 1_3:+70242296 None:intergenic
GCATTCCAAGAAACAGTGTC+TGG 0.436629 1_3:+70241614 None:intergenic
GCAAACATTTATGCATCAGC+AGG 0.441495 1_3:-70240264 Msa0137650:five_prime_UTR
AGGACCTTCCTTGGAATGAA+TGG 0.441918 1_3:-70243853 Msa0137650:five_prime_UTR
GCAGGGAATGCTCTGATCTC+TGG 0.442082 1_3:-70241296 Msa0137650:five_prime_UTR
TGGAGGCAGTGATCGTTACT+TGG 0.442196 1_3:-70239442 Msa0137650:CDS
AAACGAAGACAGAAGAAATA+GGG 0.442559 1_3:-70239604 Msa0137650:CDS
TCCAACAAGATGGGGTGAAA+GGG 0.445337 1_3:+70238929 None:intergenic
TGGAGGCCAAGGACCTTCCT+TGG 0.446102 1_3:-70243862 Msa0137650:five_prime_UTR
CTGAAAGTGTGGGTGCTGGC+TGG 0.449606 1_3:-70243222 Msa0137650:five_prime_UTR
TCCATTCCATTTGAAGCCGA+TGG 0.450012 1_3:-70240408 Msa0137650:five_prime_UTR
GGATTAATTGCCACACCACC+TGG 0.452327 1_3:-70239955 Msa0137650:five_prime_UTR
TACTTTGATTTGCTGCAAGC+TGG 0.454622 1_3:+70241163 None:intergenic
TATCTCGCTACGTGCAAAAT+GGG 0.455651 1_3:-70242192 Msa0137650:five_prime_UTR
GCTTGCATGATTGATCTCCT+TGG 0.457453 1_3:-70240471 Msa0137650:five_prime_UTR
ACTCTAGAGCCAGACAAATC+TGG 0.461867 1_3:-70240303 Msa0137650:five_prime_UTR
AGCGAACTTCTAAGTAAAGC+TGG 0.463323 1_3:-70240075 Msa0137650:five_prime_UTR
ATTATATTGAATGCCTGTGC+TGG 0.463541 1_3:-70241791 Msa0137650:five_prime_UTR
TAAAGACGGAGTCAAGATAA+TGG 0.465555 1_3:-70242374 Msa0137650:five_prime_UTR
AAACTGTTGATTTGTTTAAA+CGG 0.466103 1_3:-70241856 Msa0137650:five_prime_UTR
ACGGATCCATCGGCTTCAAA+TGG 0.467501 1_3:+70240402 None:intergenic
AAATATTCGAAGAGCGCACT+TGG 0.471695 1_3:-70241028 Msa0137650:five_prime_UTR
GTTCAGTACTTTGATCAAGC+AGG 0.472009 1_3:+70242245 None:intergenic
TACTTTGATCAAGCAGGTTG+CGG 0.472754 1_3:+70242251 None:intergenic
TTGTTTAAACGGATGGTTGA+GGG 0.473325 1_3:-70241845 Msa0137650:five_prime_UTR
GAAATAGGGAAAGAAGAGAA+AGG 0.474091 1_3:-70239590 Msa0137650:CDS
GAGACAGTGTGGTCTAGATA+TGG 0.474957 1_3:+70239175 None:intergenic
TGGAGCCAGGCGTTGTTTCG+TGG 0.475151 1_3:-70241922 Msa0137650:five_prime_UTR
CATGTCCAAGCTTCATTAGA+AGG 0.475709 1_3:+70241732 None:intergenic
CTTGATAAGGTGAACACATT+GGG 0.475987 1_3:+70241509 None:intergenic
GAACATGCTTTAAGAACAGT+TGG 0.477832 1_3:+70242097 None:intergenic
ATGTATATCAGTCTCTATGA+TGG 0.481431 1_3:+70240044 None:intergenic
TAGTGATTCAGATTTGTTTG+TGG 0.482004 1_3:-70241411 Msa0137650:five_prime_UTR
AAATGTTGCCAATGTTAGAA+AGG 0.482771 1_3:-70240232 Msa0137650:five_prime_UTR
GTCTGCAATGATTGGAGGGT+TGG 0.485630 1_3:-70240685 Msa0137650:five_prime_UTR
GGTATCGGAAGGACGGTTCA+TGG 0.486575 1_3:-70241755 Msa0137650:five_prime_UTR
TTAAAAGCATGTGCTGCAAT+GGG 0.487186 1_3:-70241482 Msa0137650:five_prime_UTR
CTTGTTGGAATATGGTCATA+TGG 0.487680 1_3:-70238915 Msa0137650:CDS
CTTAGATACGAATTTGAGAA+AGG 0.489160 1_3:+70239882 None:intergenic
CATGGCCTTCTAATGAAGCT+TGG 0.489284 1_3:-70241737 Msa0137650:five_prime_UTR
ATAAATATTAGAGCAATTGA+AGG 0.489916 1_3:-70244329 Msa0137650:five_prime_UTR
GCGCACTTGGGAAGATTTGG+TGG 0.491491 1_3:-70241015 Msa0137650:five_prime_UTR
TTGCATAACCTTTCTAACAT+TGG 0.492563 1_3:+70240224 None:intergenic
GAGACAGATACATTCTTGTT+CGG 0.494040 1_3:-70241444 Msa0137650:five_prime_UTR
CCAATTTCCAGTTGTTGCTG+AGG 0.494374 1_3:-70239486 Msa0137650:CDS
TAATGTGGAACGAAGTGAAA+AGG 0.497503 1_3:-70240022 Msa0137650:five_prime_UTR
GCAAAACAGCAATGTGAAGA+AGG 0.498121 1_3:-70240205 Msa0137650:five_prime_UTR
TTTATGCATCAGCAGGGATG+TGG 0.499174 1_3:-70240257 Msa0137650:five_prime_UTR
AACGGAAAGGCCAGTGAGGT+TGG 0.500543 1_3:+70239525 None:intergenic
GTCGCTCAGAGGCTCCTAAA+GGG 0.500616 1_3:+70239405 None:intergenic
CGTCGCTCAGAGGCTCCTAA+AGG 0.502994 1_3:+70239404 None:intergenic
CTTAAAAGCATGTGCTGCAA+TGG 0.503163 1_3:-70241483 Msa0137650:five_prime_UTR
GTTGTCGTGATGGAGGGATA+TGG 0.505701 1_3:+70239552 None:intergenic
AAGAAAGCCGTGATTCTAGT+AGG 0.506428 1_3:+70238814 None:intergenic
TTCCAACAAGATGGGGTGAA+AGG 0.506709 1_3:+70238928 None:intergenic
AGGTGGAGAAAGGATCTTCA+TGG 0.506801 1_3:-70243889 Msa0137650:five_prime_UTR
AAATTTCATAAGGTCAGATC+AGG 0.508918 1_3:-70243283 Msa0137650:five_prime_UTR
GAACTGCAGACAAACGGATC+AGG 0.509296 1_3:+70240900 None:intergenic
ATGCCATGACTGTGGTCTCA+GGG 0.510107 1_3:-70242039 Msa0137650:five_prime_UTR
TTCATTCCAAGGAAGGTCCT+TGG 0.511155 1_3:+70243856 None:intergenic
CGCAGAAGTGGAGCAATGGA+TGG 0.515967 1_3:-70238861 Msa0137650:CDS
GAAGCCGATGGATCCGTTTG+GGG 0.516651 1_3:-70240396 Msa0137650:five_prime_UTR
TGCATGTAATCACGCTGGTT+TGG 0.517552 1_3:-70240565 Msa0137650:five_prime_UTR
GTTGATATGTATGCAAAAGC+AGG 0.517629 1_3:-70241680 Msa0137650:five_prime_UTR
TCATGGTCTGCAATGATTGG+AGG 0.518200 1_3:-70240690 Msa0137650:five_prime_UTR
GTATTCCAAGTGTGAGATGA+TGG 0.518907 1_3:-70241369 Msa0137650:five_prime_UTR
CTGACTAATGTAATATGGTT+TGG 0.522888 1_3:+70240597 None:intergenic
TCACGCTGGTTTGGTAAATG+AGG 0.522992 1_3:-70240556 Msa0137650:five_prime_UTR
TCTCTGTGGTATCTCGGAAA+AGG 0.524042 1_3:+70240722 None:intergenic
TATACCTCTCTGTGGTATCT+CGG 0.526369 1_3:+70240716 None:intergenic
CTTCTAATGAAGCTTGGACA+TGG 0.527370 1_3:-70241731 Msa0137650:five_prime_UTR
GTCAACAGTTCTTAAATCTG+TGG 0.528124 1_3:-70241186 Msa0137650:five_prime_UTR
TTAGTTTCCCTGATCTTCCA+AGG 0.529601 1_3:+70240454 None:intergenic
TGACCATATTCCAACAAGAT+GGG 0.529628 1_3:+70238920 None:intergenic
ATGTGCTGCAATGGGGTTGA+AGG 0.530595 1_3:-70241474 Msa0137650:five_prime_UTR
AAAAGAGAACTGCAGACAAA+CGG 0.531240 1_3:+70240894 None:intergenic
ATGACCATATTCCAACAAGA+TGG 0.532140 1_3:+70238919 None:intergenic
TTCATGGGAATTGGAGGCCA+AGG 0.532357 1_3:-70243873 Msa0137650:five_prime_UTR
CCTCTAAAACTGAAGAATGC+AGG 0.535353 1_3:+70243312 None:intergenic
TGTTGATTTGTTTAAACGGA+TGG 0.536925 1_3:-70241852 Msa0137650:five_prime_UTR
GTTTCTGAGACTTGAGTGGC+GGG 0.537248 1_3:+70242318 None:intergenic
CACGCTGGTTTGGTAAATGA+GGG 0.540302 1_3:-70240555 Msa0137650:five_prime_UTR
ACAAGAGTACCAGATTTGTC+TGG 0.542059 1_3:+70240294 None:intergenic
CAAGCATAGTGCTCTTGTGT+TGG 0.542768 1_3:+70240489 None:intergenic
AAGCCGATGGATCCGTTTGG+GGG 0.542910 1_3:-70240395 Msa0137650:five_prime_UTR
CAAGCAAAATGCGATTTGCA+GGG 0.542990 1_3:+70244828 None:intergenic
GCATTCCACGAAACAACGCC+TGG 0.543071 1_3:+70241917 None:intergenic
GGATTGCGGGATGGAGGTAT+CGG 0.543236 1_3:-70241770 Msa0137650:five_prime_UTR
TTTAATGAGATGTGTACGTT+GGG 0.543473 1_3:-70242145 Msa0137650:five_prime_UTR
TAAATCCAAACTTAATGGCA+TGG 0.545036 1_3:+70240820 None:intergenic
AGGATCTTCATGGGAATTGG+AGG 0.546530 1_3:-70243879 Msa0137650:five_prime_UTR
TGGATATGTTGTCGTGATGG+AGG 0.546608 1_3:+70239545 None:intergenic
GAAAGAAGAGATCGCAGAAG+TGG 0.546679 1_3:-70238873 Msa0137650:CDS
CAAACTTGATCAAGTGGGTG+TGG 0.547369 1_3:+70242347 None:intergenic
GATTTGAATGAGGTGGAGAA+AGG 0.548180 1_3:-70243899 Msa0137650:five_prime_UTR
ACCTGGAATGAGTTGGATTG+AGG 0.550748 1_3:-70240181 Msa0137650:five_prime_UTR
TCCATCCCGCAATCCAGCAC+AGG 0.551224 1_3:+70241778 None:intergenic
AAAATCCAAACTTGATCAAG+TGG 0.552154 1_3:+70242341 None:intergenic
ATACCCAAAACGACGAGAGT+TGG 0.553440 1_3:+70242276 None:intergenic
TGTACCAATAGGAAGCTGAT+TGG 0.553636 1_3:-70244357 Msa0137650:intron
ATGATCCATCTTTAAAATGG+TGG 0.553755 1_3:+70239818 None:intergenic
CGAAGAAACGACGGCTGTGA+GGG 0.555876 1_3:-70239383 Msa0137650:CDS
TCAACATGGTCATGGTAAAG+AGG 0.555970 1_3:-70240661 Msa0137650:five_prime_UTR
GTTACTGAAAGTGTGGGTGC+TGG 0.556772 1_3:-70243226 Msa0137650:five_prime_UTR
AGCAATGTGAAGAAGGAACC+TGG 0.558536 1_3:-70240198 Msa0137650:five_prime_UTR
TATTGGAGCTCCAGGTGGTG+TGG 0.559575 1_3:+70239945 None:intergenic
CACACACTTTCCATCAAATG+TGG 0.562114 1_3:-70241128 Msa0137650:five_prime_UTR
TGAATGCCTGTGCTGGATTG+CGG 0.563510 1_3:-70241784 Msa0137650:five_prime_UTR
TCCATCGGCTTCAAATGGAA+TGG 0.563602 1_3:+70240407 None:intergenic
CATGGTCTGCAATGATTGGA+GGG 0.565196 1_3:-70240689 Msa0137650:five_prime_UTR
AGAAGGAACCTGGAATGAGT+TGG 0.566310 1_3:-70240188 Msa0137650:five_prime_UTR
CAAAAGACCATATTATTGCA+GGG 0.567133 1_3:-70241313 Msa0137650:five_prime_UTR
TTTGTTTAAACGGATGGTTG+AGG 0.569080 1_3:-70241846 Msa0137650:five_prime_UTR
CACAGAGAGGTATAGTCTCA+TGG 0.569419 1_3:-70240707 Msa0137650:five_prime_UTR
GAGAAACCGCACGAGACTCT+CGG 0.570537 1_3:+70244878 None:intergenic
TGTATATCAGTCTCTATGAT+GGG 0.571783 1_3:+70240045 None:intergenic
TGCTTGTAAAATAATTACGA+AGG 0.572674 1_3:-70239228 Msa0137650:CDS
GCTTGTAAAATAATTACGAA+GGG 0.573703 1_3:-70239227 Msa0137650:CDS
AACTTGTCGGCATATGAGCA+AGG 0.576182 1_3:-70240858 Msa0137650:five_prime_UTR
ACTTGATAAGGTGAACACAT+TGG 0.576785 1_3:+70241508 None:intergenic
AGGCATTCAATATAATTGAA+AGG 0.576928 1_3:+70241798 None:intergenic
AGATCGCAGAAGTGGAGCAA+TGG 0.577523 1_3:-70238865 Msa0137650:CDS
GCCTGTGCTGGATTGCGGGA+TGG 0.578009 1_3:-70241779 Msa0137650:five_prime_UTR
AGAGACTGATATACATAATG+TGG 0.579445 1_3:-70240037 Msa0137650:five_prime_UTR
GCAATAAGTTACTGAAAGTG+TGG 0.579591 1_3:-70243233 Msa0137650:five_prime_UTR
ATCATCCATCATCTCACACT+TGG 0.579866 1_3:+70241364 None:intergenic
CTCTGTGCATGTAATCACGC+TGG 0.580088 1_3:-70240570 Msa0137650:five_prime_UTR
TCAACATGGGGATGCAGAAG+AGG 0.580466 1_3:-70240964 Msa0137650:five_prime_UTR
ATACATAACAACCAAAGTGT+TGG 0.583432 1_3:+70241994 None:intergenic
ATATCCATTCATTCCAAGGA+AGG 0.584369 1_3:+70243849 None:intergenic
AACATGCTTTAAGAACAGTT+GGG 0.586486 1_3:+70242098 None:intergenic
TTATGCATCAGCAGGGATGT+GGG 0.587933 1_3:-70240256 Msa0137650:five_prime_UTR
TCAATTCCATCGTCCAACAA+TGG 0.590381 1_3:-70243569 Msa0137650:five_prime_UTR
TTGTTATGTATGCCAAATGC+GGG 0.591481 1_3:-70241982 Msa0137650:five_prime_UTR
AGCCGATGGATCCGTTTGGG+GGG 0.592233 1_3:-70240394 Msa0137650:five_prime_UTR
GGATATGTTGTCGTGATGGA+GGG 0.592592 1_3:+70239546 None:intergenic
AGAAGAATCTGTCTTAAAGA+CGG 0.593283 1_3:-70242388 Msa0137650:five_prime_UTR
GAAGTTCAATAGCTTGTGAT+CGG 0.593559 1_3:-70239205 Msa0137650:CDS
CCAACAAGATGGGGTGAAAG+GGG 0.593928 1_3:+70238930 None:intergenic
TTGATCTCCTTGGAAGATCA+GGG 0.596655 1_3:-70240461 Msa0137650:five_prime_UTR
TTGCTTCCATTGTTGGACGA+TGG 0.596890 1_3:+70243563 None:intergenic
GTATGTAGGTATGATTCTGA+AGG 0.598223 1_3:-70243626 Msa0137650:intron
CAATGGGGTTGAAGGATTTG+GGG 0.599050 1_3:-70241466 Msa0137650:five_prime_UTR
GTTAATATGTATGCAAAATG+TGG 0.600162 1_3:-70240768 Msa0137650:five_prime_UTR
ATAGCAAGATTTGAATGAGG+TGG 0.600907 1_3:-70243906 Msa0137650:five_prime_UTR
GGTTGGATATGTTGTCGTGA+TGG 0.602059 1_3:+70239542 None:intergenic
TGGCAGCAGTTATGCAGCAA+AGG 0.603105 1_3:-70238895 Msa0137650:CDS
TTCAGAGAAAGACTCTGAGA+GGG 0.603612 1_3:-70238234 Msa0137650:three_prime_UTR
TCAAAGTACTGAACCAAGAA+CGG 0.608017 1_3:-70242236 Msa0137650:five_prime_UTR
TACATAACCTCAAACCTTCG+GGG 0.610221 1_3:-70243509 Msa0137650:five_prime_UTR
GACAACATATCCAACCTCAC+TGG 0.610446 1_3:-70239535 Msa0137650:CDS
GGATGGAGGTATCGGAAGGA+CGG 0.611939 1_3:-70241762 Msa0137650:five_prime_UTR
TTGCAGGGAAAGAGCCAAAG+AGG 0.612196 1_3:+70244843 None:intergenic
GGAATAGCAAGATTTGAATG+AGG 0.612652 1_3:-70243909 Msa0137650:five_prime_UTR
GTTGGATTGAGGTCAAAGAC+AGG 0.613813 1_3:-70240170 Msa0137650:five_prime_UTR
ACGAATGACACGGTAATCCG+TGG 0.614291 1_3:-70239693 Msa0137650:five_prime_UTR
ACTCTTATTGGAGCTCCAGG+TGG 0.617053 1_3:+70239940 None:intergenic
CATTCCAAGAAACAGTGTCT+GGG 0.617063 1_3:+70241615 None:intergenic
GGTGGAGAAAGGATCTTCAT+GGG 0.617922 1_3:-70243888 Msa0137650:five_prime_UTR
GACCATATTCCAACAAGATG+GGG 0.619241 1_3:+70238921 None:intergenic
GGGTTGGCTCAACATGGTCA+TGG 0.619989 1_3:-70240669 Msa0137650:five_prime_UTR
TAACTGCATATTCTCAACAT+GGG 0.621062 1_3:-70240977 Msa0137650:five_prime_UTR
TTACAAGCAATAGGGATGTG+TGG 0.621950 1_3:+70239242 None:intergenic
AAACCCTGAGACCACAGTCA+TGG 0.623461 1_3:+70242036 None:intergenic
GGTTTCTGAGACTTGAGTGG+CGG 0.623618 1_3:+70242317 None:intergenic
AATGGTTTCTGAGACTTGAG+TGG 0.623715 1_3:+70242314 None:intergenic
AGGGAAACTAAATGAAGCAG+TGG 0.624939 1_3:-70240442 Msa0137650:five_prime_UTR
GCATCAACCTACTAGAATCA+CGG 0.625082 1_3:-70238821 Msa0137650:CDS
ATTTAATGAGATGTGTACGT+TGG 0.626457 1_3:-70242146 Msa0137650:five_prime_UTR
CTGATGCATAAATGTTTGCA+AGG 0.627143 1_3:+70240268 None:intergenic
ATTGGAGGGTTGGCTCAACA+TGG 0.628379 1_3:-70240675 Msa0137650:five_prime_UTR
GTCGTTTCTTCGTCGCTCAG+AGG 0.630788 1_3:+70239394 None:intergenic
TTTCAGAGAAAGACTCTGAG+AGG 0.631808 1_3:-70238235 Msa0137650:three_prime_UTR
TGCGGGATGGAGGTATCGGA+AGG 0.632167 1_3:-70241766 Msa0137650:five_prime_UTR
TGCAAAATGTGGAAGCATAG+AGG 0.633122 1_3:-70240757 Msa0137650:five_prime_UTR
ATATTACCAATAATCACCAC+AGG 0.635816 1_3:+70239792 None:intergenic
AATATTCGAAGAGCGCACTT+GGG 0.643345 1_3:-70241027 Msa0137650:five_prime_UTR
TTGATATGTATGCAAAAGCA+GGG 0.646180 1_3:-70241679 Msa0137650:five_prime_UTR
GTTCAATAGCTTGTGATCGG+AGG 0.646389 1_3:-70239202 Msa0137650:CDS
TGTGCTGGATTGCGGGATGG+AGG 0.648251 1_3:-70241776 Msa0137650:five_prime_UTR
AACTGCATATTCTCAACATG+GGG 0.648588 1_3:-70240976 Msa0137650:five_prime_UTR
AACAAAACACACGAATGACA+CGG 0.648805 1_3:-70239703 Msa0137650:five_prime_UTR
ACTTGTCGGCATATGAGCAA+GGG 0.649497 1_3:-70240857 Msa0137650:five_prime_UTR
ACATAACCTCAAACCTTCGG+GGG 0.650007 1_3:-70243508 Msa0137650:five_prime_UTR
AAAGATGGATCATGTTCCTG+TGG 0.650158 1_3:-70239808 Msa0137650:five_prime_UTR
CAAACATTTATGCATCAGCA+GGG 0.652125 1_3:-70240263 Msa0137650:five_prime_UTR
ATACGAATTTGAGAAAGGTG+TGG 0.653011 1_3:+70239887 None:intergenic
ACGAAGAAACGACGGCTGTG+AGG 0.655214 1_3:-70239384 Msa0137650:CDS
CCATCGTCTTCACAACGGAA+AGG 0.657005 1_3:+70239512 None:intergenic
AAATCCAAACTTGATCAAGT+GGG 0.659556 1_3:+70242342 None:intergenic
GTTGTTATGTATGCCAAATG+CGG 0.668776 1_3:-70241983 Msa0137650:five_prime_UTR
TTGCACGTGACAAGAAAACA+AGG 0.668856 1_3:+70241895 None:intergenic
CAATAAGTTACTGAAAGTGT+GGG 0.669175 1_3:-70243232 Msa0137650:five_prime_UTR
AAAGGTTCATGCCATGACTG+TGG 0.670951 1_3:-70242047 Msa0137650:five_prime_UTR
ATAACTGCATATTCTCAACA+TGG 0.671619 1_3:-70240978 Msa0137650:five_prime_UTR
ACGCTGGTTTGGTAAATGAG+GGG 0.674173 1_3:-70240554 Msa0137650:five_prime_UTR
CCTTTCCGTTGTGAAGACGA+TGG 0.674592 1_3:-70239512 Msa0137650:CDS
GAGCAATGGATGGATTTGGA+TGG 0.675607 1_3:-70238851 Msa0137650:CDS
TCACAGTGAGAAACTTGCTG+TGG 0.680687 1_3:-70239983 Msa0137650:five_prime_UTR
ATCTCTGGTTACTCGCAGTG+TGG 0.682317 1_3:-70241281 Msa0137650:five_prime_UTR
TTGGAACCGAGAGTCTCGTG+CGG 0.699867 1_3:-70244884 Msa0137650:five_prime_UTR
TCACAACGGAAAGGCCAGTG+AGG 0.703952 1_3:+70239521 None:intergenic
ATTCGTTATATATACGTACA+CGG 0.715814 1_3:-70239755 Msa0137650:five_prime_UTR
TTGGTGAGAAAGCTGCAGAG+AGG 0.716101 1_3:-70240332 Msa0137650:five_prime_UTR
GGGCACCATCGTCTTCACAA+CGG 0.719181 1_3:+70239507 None:intergenic
ATTGGCCTGAAGAGACAGTG+TGG 0.725566 1_3:+70239164 None:intergenic
TCTGAGCGACGAAGAAACGA+CGG 0.736663 1_3:-70239392 Msa0137650:CDS
CATGAGACTATACCTCTCTG+TGG 0.738112 1_3:+70240708 None:intergenic
TAAAAGCATGTGCTGCAATG+GGG 0.739287 1_3:-70241481 Msa0137650:five_prime_UTR
TAAGGTCAGATCAGGCAACG+TGG 0.760654 1_3:-70243275 Msa0137650:five_prime_UTR
ATATGTATGCAAAAGCAGGG+AGG 0.769744 1_3:-70241676 Msa0137650:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAAGGTAAATTTAT+TGG - chr1_3:70238812-70238831 Msa0137650:CDS 10.0%
!!! TCATATTTATATTTGTTATT+TGG - chr1_3:70239433-70239452 Msa0137650:CDS 10.0%
!! AGATGATTTATTAATAAGTA+AGG - chr1_3:70239056-70239075 Msa0137650:intron 15.0%
!! GTAAAATAAACTAGTAATTA+CGG + chr1_3:70239264-70239283 None:intergenic 15.0%
!!! TTCAATTTTCTATTATATGT+TGG - chr1_3:70239308-70239327 Msa0137650:intron 15.0%
!! AAATTAGAATCCAAAATAAT+GGG + chr1_3:70239644-70239663 None:intergenic 15.0%
!! AAAATTAGAATCCAAAATAA+TGG + chr1_3:70239645-70239664 None:intergenic 15.0%
!! ATTAAGAAAGATTTGAATAT+GGG - chr1_3:70241008-70241027 Msa0137650:five_prime_UTR 15.0%
!! ATATAAGTTAAATTAAATCC+AGG + chr1_3:70243770-70243789 None:intergenic 15.0%
!!! TAATTATTTTACAAGCAATA+GGG + chr1_3:70243850-70243869 None:intergenic 15.0%
!! AATTAATCCTATAATTCTAA+AGG + chr1_3:70243999-70244018 None:intergenic 15.0%
!!! TAATGATTCAATTTCTTTTT+AGG - chr1_3:70244088-70244107 Msa0137650:intron 15.0%
!!! TTTATTGTTTAAATTTTGTG+AGG + chr1_3:70244559-70244578 None:intergenic 15.0%
!!! ACAATAAATAGTTTTTTTTG+AGG - chr1_3:70244571-70244590 Msa0137650:intron 15.0%
!!! CTTCATGTATTGTTTTTTTA+TGG - chr1_3:70238663-70238682 Msa0137650:intron 20.0%
!! ATAAATATTAGAGCAATTGA+AGG - chr1_3:70238752-70238771 Msa0137650:intron 20.0%
!!! TTTTAGAATATAGATCTGAA+TGG - chr1_3:70239151-70239170 Msa0137650:intron 20.0%
!!! ATATTTGTTATTTGGTATGT+AGG - chr1_3:70239441-70239460 Msa0137650:CDS 20.0%
!! TATTCATTTCAGAATAAATC+TGG - chr1_3:70239605-70239624 Msa0137650:CDS 20.0%
!!! AATAATGTATCCCATTATTT+TGG - chr1_3:70239631-70239650 Msa0137650:CDS 20.0%
!! ATGATTGAAATTTATTGAGT+TGG + chr1_3:70239707-70239726 None:intergenic 20.0%
!! GAGGATATATAAATTTCATA+AGG - chr1_3:70239788-70239807 Msa0137650:five_prime_UTR 20.0%
!!! ATGATTTTAGGCTAAAATAT+GGG + chr1_3:70240275-70240294 None:intergenic 20.0%
!! TAGAACAATGAGATTAATAA+GGG + chr1_3:70240659-70240678 None:intergenic 20.0%
!! TTAGAACAATGAGATTAATA+AGG + chr1_3:70240660-70240679 None:intergenic 20.0%
!! ATTAATCTCATTGTTCTAAT+AGG - chr1_3:70240661-70240680 Msa0137650:five_prime_UTR 20.0%
!! GATTAAGAAAGATTTGAATA+TGG - chr1_3:70241007-70241026 Msa0137650:five_prime_UTR 20.0%
!!! AAACTGTTGATTTGTTTAAA+CGG - chr1_3:70241225-70241244 Msa0137650:five_prime_UTR 20.0%
!!! GAAACAATATTTTGAAACAA+TGG - chr1_3:70242549-70242568 Msa0137650:intron 20.0%
!!! TGATGAAATATTTGCTAAAT+TGG - chr1_3:70242975-70242994 Msa0137650:intron 20.0%
!! AAATTCTTCTTTACTCTTAT+TGG + chr1_3:70243156-70243175 None:intergenic 20.0%
!! TACAATCAAATTGTAAGAAT+CGG + chr1_3:70243358-70243377 None:intergenic 20.0%
!! GAAAAAGAAAGAAGAAAAAA+AGG + chr1_3:70243450-70243469 None:intergenic 20.0%
!!! GAATCTTTTTTTTTTTAACC+TGG - chr1_3:70243749-70243768 Msa0137650:intron 20.0%
!!! GTAATTATTTTACAAGCAAT+AGG + chr1_3:70243851-70243870 None:intergenic 20.0%
!!! AATACTTCCTTTAGAATTAT+AGG - chr1_3:70243989-70244008 Msa0137650:intron 20.0%
!! TGCAATATAAACATATGATT+TGG - chr1_3:70244380-70244399 Msa0137650:intron 20.0%
!! AGTAAGATGTCAAATAAAAT+GGG + chr1_3:70244474-70244493 None:intergenic 20.0%
!!! TTTAAATTTTGTGAGGTTTT+AGG + chr1_3:70244552-70244571 None:intergenic 20.0%
!!! TTTGTTTTCTTGTTTTTTTC+AGG - chr1_3:70244792-70244811 Msa0137650:intron 20.0%
!!! TATTTTCTCGAGATTTTTTT+TGG + chr1_3:70244826-70244845 None:intergenic 20.0%
! TTGAATAGACAGTTAACAAA+TGG + chr1_3:70238543-70238562 None:intergenic 25.0%
!!! CCTTTTAATTTAAGCAACAA+AGG + chr1_3:70238803-70238822 None:intergenic 25.0%
!! CCTTTGTTGCTTAAATTAAA+AGG - chr1_3:70238800-70238819 Msa0137650:CDS 25.0%
! TCTAGATCTATTATTCATGA+TGG - chr1_3:70238865-70238884 Msa0137650:CDS 25.0%
! TTAAGTTCACAAAAGAGTAA+AGG - chr1_3:70238898-70238917 Msa0137650:CDS 25.0%
!!! TAAGACATTAGTTTTCGTAT+TGG - chr1_3:70239118-70239137 Msa0137650:intron 25.0%
! AAAAATATCCATTCATTCCA+AGG + chr1_3:70239239-70239258 None:intergenic 25.0%
! ACAATGAAGAATGCAATTTA+AGG - chr1_3:70239900-70239919 Msa0137650:five_prime_UTR 25.0%
!! AAAAACATTAAAAGCACACA+TGG + chr1_3:70240009-70240028 None:intergenic 25.0%
!! GATGATTTTAGGCTAAAATA+TGG + chr1_3:70240276-70240295 None:intergenic 25.0%
! GATTAGAATTCTCTAATTTG+AGG + chr1_3:70240312-70240331 None:intergenic 25.0%
!! TTATAAGATTCTGTCATTTG+GGG + chr1_3:70240534-70240553 None:intergenic 25.0%
!! GTTATAAGATTCTGTCATTT+GGG + chr1_3:70240535-70240554 None:intergenic 25.0%
! AGTTATAAGATTCTGTCATT+TGG + chr1_3:70240536-70240555 None:intergenic 25.0%
! AGAACAATGAGATTAATAAG+GGG + chr1_3:70240658-70240677 None:intergenic 25.0%
! AGATTTGAATATGGGAAAAA+AGG - chr1_3:70241016-70241035 Msa0137650:five_prime_UTR 25.0%
!! AGTGATTCTAAGAAATTGTT+TGG - chr1_3:70241128-70241147 Msa0137650:five_prime_UTR 25.0%
!! GAAATTGTTTGGTATGATTT+TGG - chr1_3:70241139-70241158 Msa0137650:five_prime_UTR 25.0%
! AGGCATTCAATATAATTGAA+AGG + chr1_3:70241286-70241305 None:intergenic 25.0%
! TCTTCATGAGTATAATGATT+TGG - chr1_3:70241508-70241527 Msa0137650:five_prime_UTR 25.0%
!! GGTTGAAATCTATATTTTCA+TGG + chr1_3:70241865-70241884 None:intergenic 25.0%
! TGAATAAATTCCACATTTGA+TGG + chr1_3:70241966-70241985 None:intergenic 25.0%
! AGACATAAATCCAAACTTAA+TGG + chr1_3:70242269-70242288 None:intergenic 25.0%
! GTTAATATGTATGCAAAATG+TGG - chr1_3:70242313-70242332 Msa0137650:five_prime_UTR 25.0%
!!! ACAATATTTTGAAACAATGG+AGG - chr1_3:70242552-70242571 Msa0137650:intron 25.0%
! TTGTTGTCAGAGATATTAAT+AGG - chr1_3:70243238-70243257 Msa0137650:five_prime_UTR 25.0%
!! AACATGATCCATCTTTAAAA+TGG + chr1_3:70243269-70243288 None:intergenic 25.0%
! ATTCGTTATATATACGTACA+CGG - chr1_3:70243326-70243345 Msa0137650:intron 25.0%
!!! AAGTAACAACATTTTTTCCA+CGG + chr1_3:70243408-70243427 None:intergenic 25.0%
! AAGAAAGAAGAAAAAAAGGA+GGG + chr1_3:70243446-70243465 None:intergenic 25.0%
! AAAGAAAGAAGAAAAAAAGG+AGG + chr1_3:70243447-70243466 None:intergenic 25.0%
! TGCTTGTAAAATAATTACGA+AGG - chr1_3:70243853-70243872 Msa0137650:five_prime_UTR 25.0%
! GCTTGTAAAATAATTACGAA+GGG - chr1_3:70243854-70243873 Msa0137650:five_prime_UTR 25.0%
! AAAAAAAATACTGTGTGCAT+TGG + chr1_3:70244040-70244059 None:intergenic 25.0%
! GAGTAAGATGTCAAATAAAA+TGG + chr1_3:70244475-70244494 None:intergenic 25.0%
! AATCTGATGAATAAGTTACT+GGG - chr1_3:70244700-70244719 Msa0137650:intron 25.0%
! GCAGTATTTGATTTCAATGT+TGG + chr1_3:70238353-70238372 None:intergenic 30.0%
! GAGATAATTTTCGCATTGTT+TGG - chr1_3:70238490-70238509 Msa0137650:intron 30.0%
! ACAAATGGTTTCTGAGAATT+GGG + chr1_3:70238528-70238547 None:intergenic 30.0%
! AACAAATGGTTTCTGAGAAT+TGG + chr1_3:70238529-70238548 None:intergenic 30.0%
TTGTGAAAATGTGTACCAAT+AGG - chr1_3:70238713-70238732 Msa0137650:intron 30.0%
! TTTTCATACACTTACACACA+CGG - chr1_3:70238977-70238996 Msa0137650:intron 30.0%
AAATTTCATAAGGTCAGATC+AGG - chr1_3:70239798-70239817 Msa0137650:five_prime_UTR 30.0%
TAACTTATTGCAAGTCTAAC+AGG + chr1_3:70239839-70239858 None:intergenic 30.0%
! CAATAAGTTACTGAAAGTGT+GGG - chr1_3:70239849-70239868 Msa0137650:five_prime_UTR 30.0%
GTTGAGATTCCTTAAGTTTA+GGG - chr1_3:70240158-70240177 Msa0137650:five_prime_UTR 30.0%
! TGTTTTTCACCCTAAACTTA+AGG + chr1_3:70240170-70240189 None:intergenic 30.0%
TGGGAGAAAATATAAATGTG+CGG + chr1_3:70240256-70240275 None:intergenic 30.0%
!!! TCTATCTTTGGGATGATTTT+AGG + chr1_3:70240287-70240306 None:intergenic 30.0%
! AATTTGAGGTCTCTATCTTT+GGG + chr1_3:70240298-70240317 None:intergenic 30.0%
! TAATTTGAGGTCTCTATCTT+TGG + chr1_3:70240299-70240318 None:intergenic 30.0%
TATGGCATATAAGCATTCAA+AGG + chr1_3:70240402-70240421 None:intergenic 30.0%
TTTGAATGCTTATATGCCAT+AGG - chr1_3:70240401-70240420 Msa0137650:five_prime_UTR 30.0%
ATAAGGGGAAGAAAATAAGA+TGG + chr1_3:70240643-70240662 None:intergenic 30.0%
AGAAGAATCTGTCTTAAAGA+CGG - chr1_3:70240693-70240712 Msa0137650:five_prime_UTR 30.0%
AAATCCAAACTTGATCAAGT+GGG + chr1_3:70240742-70240761 None:intergenic 30.0%
AAAATCCAAACTTGATCAAG+TGG + chr1_3:70240743-70240762 None:intergenic 30.0%
! TGGAATAGAGTGTTAACAAA+TGG + chr1_3:70240788-70240807 None:intergenic 30.0%
!! GTTTCATAAAGAAGCGTTAT+TGG - chr1_3:70240911-70240930 Msa0137650:five_prime_UTR 30.0%
ATTTAATGAGATGTGTACGT+TGG - chr1_3:70240935-70240954 Msa0137650:five_prime_UTR 30.0%
TTTAATGAGATGTGTACGTT+GGG - chr1_3:70240936-70240955 Msa0137650:five_prime_UTR 30.0%
!! AACATGCTTTAAGAACAGTT+GGG + chr1_3:70240986-70241005 None:intergenic 30.0%
ATACATAACAACCAAAGTGT+TGG + chr1_3:70241090-70241109 None:intergenic 30.0%
!! TGTTGATTTGTTTAAACGGA+TGG - chr1_3:70241229-70241248 Msa0137650:five_prime_UTR 30.0%
! TTTTGCATACATATCAACCA+AGG + chr1_3:70241399-70241418 None:intergenic 30.0%
TTGATATGTATGCAAAAGCA+GGG - chr1_3:70241402-70241421 Msa0137650:five_prime_UTR 30.0%
TTGAATGAGATGAAAAAGTC+TGG - chr1_3:70241542-70241561 Msa0137650:five_prime_UTR 30.0%
! TAGTGATTCAGATTTGTTTG+TGG - chr1_3:70241670-70241689 Msa0137650:five_prime_UTR 30.0%
! GCAATAATATGGTCTTTTGT+TGG + chr1_3:70241767-70241786 None:intergenic 30.0%
ACAAAAGACCATATTATTGC+AGG - chr1_3:70241767-70241786 Msa0137650:five_prime_UTR 30.0%
CAAAAGACCATATTATTGCA+GGG - chr1_3:70241768-70241787 Msa0137650:five_prime_UTR 30.0%
ATAACTGCATATTCTCAACA+TGG - chr1_3:70242103-70242122 Msa0137650:five_prime_UTR 30.0%
TAACTGCATATTCTCAACAT+GGG - chr1_3:70242104-70242123 Msa0137650:five_prime_UTR 30.0%
TAAATCCAAACTTAATGGCA+TGG + chr1_3:70242264-70242283 None:intergenic 30.0%
CATATTAACAAGAGAATTGC+TGG + chr1_3:70242302-70242321 None:intergenic 30.0%
CTGACTAATGTAATATGGTT+TGG + chr1_3:70242487-70242506 None:intergenic 30.0%
! GAACACTGACTAATGTAATA+TGG + chr1_3:70242492-70242511 None:intergenic 30.0%
ATCCACAAAAATGTTGAACT+TGG - chr1_3:70242730-70242749 Msa0137650:intron 30.0%
AAATGTTGCCAATGTTAGAA+AGG - chr1_3:70242849-70242868 Msa0137650:intron 30.0%
TTGCATAACCTTTCTAACAT+TGG + chr1_3:70242860-70242879 None:intergenic 30.0%
TGTATATCAGTCTCTATGAT+GGG + chr1_3:70243039-70243058 None:intergenic 30.0%
ATGTATATCAGTCTCTATGA+TGG + chr1_3:70243040-70243059 None:intergenic 30.0%
AGAGACTGATATACATAATG+TGG - chr1_3:70243044-70243063 Msa0137650:intron 30.0%
CTTAGATACGAATTTGAGAA+AGG + chr1_3:70243202-70243221 None:intergenic 30.0%
!! ATGATCCATCTTTAAAATGG+TGG + chr1_3:70243266-70243285 None:intergenic 30.0%
ATATTACCAATAATCACCAC+AGG + chr1_3:70243292-70243311 None:intergenic 30.0%
AGAAAAAAAGGAGGGAAAAA+GGG + chr1_3:70243438-70243457 None:intergenic 30.0%
AAGAAAAAAAGGAGGGAAAA+AGG + chr1_3:70243439-70243458 None:intergenic 30.0%
AAAACGAAGACAGAAGAAAT+AGG - chr1_3:70243476-70243495 Msa0137650:intron 30.0%
AAACGAAGACAGAAGAAATA+GGG - chr1_3:70243477-70243496 Msa0137650:intron 30.0%
!! TTGTTGTTCGATTCTTTTGA+TGG - chr1_3:70243619-70243638 Msa0137650:five_prime_UTR 30.0%
AATCTTCACAAAAACAGTGA+GGG + chr1_3:70243811-70243830 None:intergenic 30.0%
TAATCTTCACAAAAACAGTG+AGG + chr1_3:70243812-70243831 None:intergenic 30.0%
! ATAGCAATTTGCAACCTTTT+TGG + chr1_3:70244322-70244341 None:intergenic 30.0%
TAATGACATTCGATTAACTG+CGG - chr1_3:70244409-70244428 Msa0137650:intron 30.0%
TCAAATAAAATGGGTGAAAG+TGG + chr1_3:70244465-70244484 None:intergenic 30.0%
TCTGACAATATGATTATGCA+TGG + chr1_3:70244669-70244688 None:intergenic 30.0%
CAATCTGATGAATAAGTTAC+TGG - chr1_3:70244699-70244718 Msa0137650:intron 30.0%
! CTATGCTAAGCAACTTTTAA+AGG - chr1_3:70244910-70244929 Msa0137650:five_prime_UTR 30.0%
! TATTCAAACTCTCGTCGTTT+TGG - chr1_3:70238556-70238575 Msa0137650:intron 35.0%
!! ATTCAAACTCTCGTCGTTTT+GGG - chr1_3:70238557-70238576 Msa0137650:intron 35.0%
TACTTTGATCAAGCAGTTTG+CGG + chr1_3:70238588-70238607 None:intergenic 35.0%
! TTGAAGTATCAGTAGAAGTG+TGG + chr1_3:70238616-70238635 None:intergenic 35.0%
GGAATAGCAAGATTTGAATG+AGG - chr1_3:70239172-70239191 Msa0137650:CDS 35.0%
ATAGCAAGATTTGAATGAGG+TGG - chr1_3:70239175-70239194 Msa0137650:CDS 35.0%
ATATCCATTCATTCCAAGGA+AGG + chr1_3:70239235-70239254 None:intergenic 35.0%
! GTGTGAAGTGAATTGATTTC+AGG - chr1_3:70239343-70239362 Msa0137650:intron 35.0%
GTATGTAGGTATGATTCTGA+AGG - chr1_3:70239455-70239474 Msa0137650:CDS 35.0%
CTTACATAACCTCAAACCTT+CGG - chr1_3:70239570-70239589 Msa0137650:CDS 35.0%
TTACATAACCTCAAACCTTC+GGG - chr1_3:70239571-70239590 Msa0137650:CDS 35.0%
ATTTCCTAGCATTGCTAAGA+TGG - chr1_3:70239667-70239686 Msa0137650:CDS 35.0%
TTAACCATCTTAGCAATGCT+AGG + chr1_3:70239674-70239693 None:intergenic 35.0%
GCAATAAGTTACTGAAAGTG+TGG - chr1_3:70239848-70239867 Msa0137650:five_prime_UTR 35.0%
TGAAGTTGTCTCAATCAATC+TGG - chr1_3:70239926-70239945 Msa0137650:five_prime_UTR 35.0%
CTCAATCAATCTGGAAGTTA+CGG - chr1_3:70239935-70239954 Msa0137650:five_prime_UTR 35.0%
AAGTTACGGTAATGAAGCAT+GGG - chr1_3:70239949-70239968 Msa0137650:five_prime_UTR 35.0%
AGACACCAATGACATTTAAG+TGG - chr1_3:70240130-70240149 Msa0137650:five_prime_UTR 35.0%
CCAATGACATTTAAGTGGAA+CGG - chr1_3:70240135-70240154 Msa0137650:five_prime_UTR 35.0%
CAATGACATTTAAGTGGAAC+GGG - chr1_3:70240136-70240155 Msa0137650:five_prime_UTR 35.0%
GGTTGAGATTCCTTAAGTTT+AGG - chr1_3:70240157-70240176 Msa0137650:five_prime_UTR 35.0%
TATAAATGTGCGGAGAAATC+TGG + chr1_3:70240246-70240265 None:intergenic 35.0%
TAATCTCAACTGAAACCCTT+TGG - chr1_3:70240327-70240346 Msa0137650:five_prime_UTR 35.0%
CTTATATGCCATAGGATGAA+AGG - chr1_3:70240409-70240428 Msa0137650:five_prime_UTR 35.0%
TAAAGACGGAGTCAAGATAA+TGG - chr1_3:70240707-70240726 Msa0137650:five_prime_UTR 35.0%
!! TCAAAGTACTGAACCAAGAA+CGG - chr1_3:70240845-70240864 Msa0137650:five_prime_UTR 35.0%
!! GAACATGCTTTAAGAACAGT+TGG + chr1_3:70240987-70241006 None:intergenic 35.0%
!! TGCTTTTGTTTCCAACACTT+TGG - chr1_3:70241076-70241095 Msa0137650:five_prime_UTR 35.0%
GTTGTTATGTATGCCAAATG+CGG - chr1_3:70241098-70241117 Msa0137650:five_prime_UTR 35.0%
TTGTTATGTATGCCAAATGC+GGG - chr1_3:70241099-70241118 Msa0137650:five_prime_UTR 35.0%
TTTGTTTAAACGGATGGTTG+AGG - chr1_3:70241235-70241254 Msa0137650:five_prime_UTR 35.0%
TTGTTTAAACGGATGGTTGA+GGG - chr1_3:70241236-70241255 Msa0137650:five_prime_UTR 35.0%
ATTGAAAGGCTGTACTCATT+AGG + chr1_3:70241272-70241291 None:intergenic 35.0%
ATTATATTGAATGCCTGTGC+TGG - chr1_3:70241290-70241309 Msa0137650:five_prime_UTR 35.0%
! TCAATTTTCTGCAAATGCCT+TGG - chr1_3:70241379-70241398 Msa0137650:five_prime_UTR 35.0%
GTTGATATGTATGCAAAAGC+AGG - chr1_3:70241401-70241420 Msa0137650:five_prime_UTR 35.0%
TCTTGGAATGCAATTATTGC+TGG - chr1_3:70241479-70241498 Msa0137650:five_prime_UTR 35.0%
CTTGATAAGGTGAACACATT+GGG + chr1_3:70241575-70241594 None:intergenic 35.0%
ACTTGATAAGGTGAACACAT+TGG + chr1_3:70241576-70241595 None:intergenic 35.0%
!!! TGCTTTTAAGGCACTTGATA+AGG + chr1_3:70241588-70241607 None:intergenic 35.0%
! TTAAAAGCATGTGCTGCAAT+GGG - chr1_3:70241599-70241618 Msa0137650:five_prime_UTR 35.0%
GAGACAGATACATTCTTGTT+CGG - chr1_3:70241637-70241656 Msa0137650:five_prime_UTR 35.0%
GAACTGTTGACAAAGTAGTT+TGG + chr1_3:70241886-70241905 None:intergenic 35.0%
GTCAACAGTTCTTAAATCTG+TGG - chr1_3:70241895-70241914 Msa0137650:five_prime_UTR 35.0%
AACTGCATATTCTCAACATG+GGG - chr1_3:70242105-70242124 Msa0137650:five_prime_UTR 35.0%
AAAAGAGAACTGCAGACAAA+CGG + chr1_3:70242190-70242209 None:intergenic 35.0%
GAAACAATGGAGGAAAAGTT+TGG - chr1_3:70242562-70242581 Msa0137650:intron 35.0%
! CACCAAGTTCAACATTTTTG+TGG + chr1_3:70242735-70242754 None:intergenic 35.0%
CTGATGCATAAATGTTTGCA+AGG + chr1_3:70242816-70242835 None:intergenic 35.0%
CAAACATTTATGCATCAGCA+GGG - chr1_3:70242818-70242837 Msa0137650:intron 35.0%
AGGATACACACTTTCATTGT+TGG - chr1_3:70242931-70242950 Msa0137650:intron 35.0%
TAATGTGGAACGAAGTGAAA+AGG - chr1_3:70243059-70243078 Msa0137650:intron 35.0%
ATACGAATTTGAGAAAGGTG+TGG + chr1_3:70243197-70243216 None:intergenic 35.0%
! TCGTATCTAAGCTTGTTTCA+AGG - chr1_3:70243211-70243230 Msa0137650:five_prime_UTR 35.0%
!! AGGTTCCACCATTTTAAAGA+TGG - chr1_3:70243258-70243277 Msa0137650:five_prime_UTR 35.0%
AACAAAACACACGAATGACA+CGG - chr1_3:70243378-70243397 Msa0137650:intron 35.0%
GAAAAAAAGGAGGGAAAAAG+GGG + chr1_3:70243437-70243456 None:intergenic 35.0%
GAAATAGGGAAAGAAGAGAA+AGG - chr1_3:70243491-70243510 Msa0137650:intron 35.0%
! TTGTTCGATTCTTTTGATGG+AGG - chr1_3:70243622-70243641 Msa0137650:intron 35.0%
! GAAGTTCAATAGCTTGTGAT+CGG - chr1_3:70243876-70243895 Msa0137650:five_prime_UTR 35.0%
TAAGACACTCACATTCACAT+TGG + chr1_3:70243938-70243957 None:intergenic 35.0%
TGACCATATTCCAACAAGAT+GGG + chr1_3:70244164-70244183 None:intergenic 35.0%
ATGACCATATTCCAACAAGA+TGG + chr1_3:70244165-70244184 None:intergenic 35.0%
CTTGTTGGAATATGGTCATA+TGG - chr1_3:70244166-70244185 Msa0137650:intron 35.0%
TTATAGCAATTCCGAGTTCT+AGG + chr1_3:70244524-70244543 None:intergenic 35.0%
TCAGTATCATGAGAGTAAGA+TGG + chr1_3:70244597-70244616 None:intergenic 35.0%
TCTGCAACTCAATTCCTCTT+TGG - chr1_3:70238224-70238243 Msa0137650:three_prime_UTR 40.0%
CAAGCAAAATGCGATTTGCA+GGG + chr1_3:70238256-70238275 None:intergenic 40.0%
TCAAGCAAAATGCGATTTGC+AGG + chr1_3:70238257-70238276 None:intergenic 40.0%
ATATGTGTGTGAACAATGCG+TGG - chr1_3:70238440-70238459 Msa0137650:intron 40.0%
! AATGGTTTCTGAGAATTGGG+TGG + chr1_3:70238525-70238544 None:intergenic 40.0%
ACTTTGATCAAGCAGTTTGC+GGG + chr1_3:70238587-70238606 None:intergenic 40.0%
TGTACCAATAGGAAGCTGAT+TGG - chr1_3:70238724-70238743 Msa0137650:intron 40.0%
TTTGCCAATCAGCTTCCTAT+TGG + chr1_3:70238731-70238750 None:intergenic 40.0%
TTTCCATGAACGCAAGACAT+TGG + chr1_3:70238928-70238947 None:intergenic 40.0%
GATTTGAATGAGGTGGAGAA+AGG - chr1_3:70239182-70239201 Msa0137650:CDS 40.0%
GAAAGGATCTTCATGGGAAT+TGG - chr1_3:70239199-70239218 Msa0137650:CDS 40.0%
TCAATTCCATCGTCCAACAA+TGG - chr1_3:70239512-70239531 Msa0137650:CDS 40.0%
!! CACTGATTTGCTTCCATTGT+TGG + chr1_3:70239528-70239547 None:intergenic 40.0%
TACATAACCTCAAACCTTCG+GGG - chr1_3:70239572-70239591 Msa0137650:CDS 40.0%
!! CCTCTAAAACTGAAGAATGC+AGG + chr1_3:70239772-70239791 None:intergenic 40.0%
!! CCTGCATTCTTCAGTTTTAG+AGG - chr1_3:70239769-70239788 Msa0137650:five_prime_UTR 40.0%
GAAGTTACGGTAATGAAGCA+TGG - chr1_3:70239948-70239967 Msa0137650:five_prime_UTR 40.0%
CCGTTCCACTTAAATGTCAT+TGG + chr1_3:70240138-70240157 None:intergenic 40.0%
TCAACTGAAACCCTTTGGTA+AGG - chr1_3:70240332-70240351 Msa0137650:five_prime_UTR 40.0%
CAACTGAAACCCTTTGGTAA+GGG - chr1_3:70240333-70240352 Msa0137650:five_prime_UTR 40.0%
AAGTGCAATCCCTTACCAAA+GGG + chr1_3:70240345-70240364 None:intergenic 40.0%
ACTTGGATCGTCTAACTTTG+TGG - chr1_3:70240361-70240380 Msa0137650:five_prime_UTR 40.0%
GCATATAAGCATTCAAAGGC+CGG + chr1_3:70240398-70240417 None:intergenic 40.0%
! AGGGTTTAGGGTTTAGAAGA+TGG + chr1_3:70240504-70240523 None:intergenic 40.0%
! TGTCATTTGGGGTGAGTTTA+GGG + chr1_3:70240523-70240542 None:intergenic 40.0%
!! AATGGTTTCTGAGACTTGAG+TGG + chr1_3:70240770-70240789 None:intergenic 40.0%
! TATTCCAACTCTCGTCGTTT+TGG - chr1_3:70240801-70240820 Msa0137650:five_prime_UTR 40.0%
!! ATTCCAACTCTCGTCGTTTT+GGG - chr1_3:70240802-70240821 Msa0137650:five_prime_UTR 40.0%
TACTTTGATCAAGCAGGTTG+CGG + chr1_3:70240833-70240852 None:intergenic 40.0%
GTTCAGTACTTTGATCAAGC+AGG + chr1_3:70238594-70238613 None:intergenic 40.0%
!! AACCAAGAACGGTTGTTTCT+TGG - chr1_3:70240856-70240875 Msa0137650:five_prime_UTR 40.0%
ATATCTCGCTACGTGCAAAA+TGG - chr1_3:70240888-70240907 Msa0137650:five_prime_UTR 40.0%
TATCTCGCTACGTGCAAAAT+GGG - chr1_3:70240889-70240908 Msa0137650:five_prime_UTR 40.0%
!!! TTTGGTATGATTTTGGAGCC+AGG - chr1_3:70241146-70241165 Msa0137650:five_prime_UTR 40.0%
TTGCACGTGACAAGAAAACA+AGG + chr1_3:70241189-70241208 None:intergenic 40.0%
CATGTCCAAGCTTCATTAGA+AGG + chr1_3:70241352-70241371 None:intergenic 40.0%
CTTCTAATGAAGCTTGGACA+TGG - chr1_3:70241350-70241369 Msa0137650:five_prime_UTR 40.0%
AATGAAGCTTGGACATGGTT+TGG - chr1_3:70241355-70241374 Msa0137650:five_prime_UTR 40.0%
ATATGTATGCAAAAGCAGGG+AGG - chr1_3:70241405-70241424 Msa0137650:five_prime_UTR 40.0%
CATTCCAAGAAACAGTGTCT+GGG + chr1_3:70241469-70241488 None:intergenic 40.0%
! CATTGCAGCACATGCTTTTA+AGG + chr1_3:70241600-70241619 None:intergenic 40.0%
! CTTAAAAGCATGTGCTGCAA+TGG - chr1_3:70241598-70241617 Msa0137650:five_prime_UTR 40.0%
! TAAAAGCATGTGCTGCAATG+GGG - chr1_3:70241600-70241619 Msa0137650:five_prime_UTR 40.0%
! TCAGATTTGTTTGTGGCTGT+TGG - chr1_3:70241677-70241696 Msa0137650:five_prime_UTR 40.0%
GTATTCCAAGTGTGAGATGA+TGG - chr1_3:70241712-70241731 Msa0137650:five_prime_UTR 40.0%
ATCATCCATCATCTCACACT+TGG + chr1_3:70241720-70241739 None:intergenic 40.0%
GAGCATTCCCTGCAATAATA+TGG + chr1_3:70241778-70241797 None:intergenic 40.0%
!! TACTTTGATTTGCTGCAAGC+TGG + chr1_3:70241921-70241940 None:intergenic 40.0%
CACACACTTTCCATCAAATG+TGG - chr1_3:70241953-70241972 Msa0137650:five_prime_UTR 40.0%
AACAGTCTGCTTGACACTTA+TGG - chr1_3:70242001-70242020 Msa0137650:five_prime_UTR 40.0%
! AAATATTCGAAGAGCGCACT+TGG - chr1_3:70242053-70242072 Msa0137650:five_prime_UTR 40.0%
! AATATTCGAAGAGCGCACTT+GGG - chr1_3:70242054-70242073 Msa0137650:five_prime_UTR 40.0%
AAATGCTTGCGCAAACTTGT+CGG - chr1_3:70242210-70242229 Msa0137650:five_prime_UTR 40.0%
CATGTCCATGCCATTAAGTT+TGG - chr1_3:70242256-70242275 Msa0137650:five_prime_UTR 40.0%
! TGCAAAATGTGGAAGCATAG+AGG - chr1_3:70242324-70242343 Msa0137650:five_prime_UTR 40.0%
TATACCTCTCTGTGGTATCT+CGG + chr1_3:70242368-70242387 None:intergenic 40.0%
TCAACATGGTCATGGTAAAG+AGG - chr1_3:70242420-70242439 Msa0137650:intron 40.0%
ATTGATCTCCTTGGAAGATC+AGG - chr1_3:70242619-70242638 Msa0137650:intron 40.0%
TTGATCTCCTTGGAAGATCA+GGG - chr1_3:70242620-70242639 Msa0137650:intron 40.0%
TTAGTTTCCCTGATCTTCCA+AGG + chr1_3:70242630-70242649 None:intergenic 40.0%
AGGGAAACTAAATGAAGCAG+TGG - chr1_3:70242639-70242658 Msa0137650:intron 40.0%
!! ACAAGAGTACCAGATTTGTC+TGG + chr1_3:70242790-70242809 None:intergenic 40.0%
GCAAACATTTATGCATCAGC+AGG - chr1_3:70242817-70242836 Msa0137650:intron 40.0%
GCAAAACAGCAATGTGAAGA+AGG - chr1_3:70242876-70242895 Msa0137650:intron 40.0%
AGCGAACTTCTAAGTAAAGC+TGG - chr1_3:70243006-70243025 Msa0137650:intron 40.0%
TTTACTCTTATTGGAGCTCC+AGG + chr1_3:70243147-70243166 None:intergenic 40.0%
AAAGATGGATCATGTTCCTG+TGG - chr1_3:70243273-70243292 Msa0137650:five_prime_UTR 40.0%
CATGTTCCTGTGGTGATTAT+TGG - chr1_3:70243283-70243302 Msa0137650:five_prime_UTR 40.0%
CTCAGCAACAACTGGAAATT+GGG + chr1_3:70243597-70243616 None:intergenic 40.0%
TTACAAGCAATAGGGATGTG+TGG + chr1_3:70243842-70243861 None:intergenic 40.0%
TTAATTTCCCACCTTCCTGT+AGG - chr1_3:70244013-70244032 Msa0137650:intron 40.0%
! AGGGGTTTTTCTATCTGTCA+AGG + chr1_3:70244136-70244155 None:intergenic 40.0%
GACCATATTCCAACAAGATG+GGG + chr1_3:70244163-70244182 None:intergenic 40.0%
GCATCAACCTACTAGAATCA+CGG - chr1_3:70244260-70244279 Msa0137650:intron 40.0%
AAGAAAGCCGTGATTCTAGT+AGG + chr1_3:70244270-70244289 None:intergenic 40.0%
! CTAGAATCACGGCTTTCTTT+TGG - chr1_3:70244271-70244290 Msa0137650:intron 40.0%
!! CTTTTTGGAAACACTCAAGC+AGG + chr1_3:70244307-70244326 None:intergenic 40.0%
CTGCTTGAGTGTTTCCAAAA+AGG - chr1_3:70244305-70244324 Msa0137650:five_prime_UTR 40.0%
CGAAAACTTCTCCTAGAACT+CGG - chr1_3:70244510-70244529 Msa0137650:intron 40.0%
TTTCAGAGAAAGACTCTGAG+AGG - chr1_3:70244846-70244865 Msa0137650:five_prime_UTR 40.0%
! TTCAGAGAAAGACTCTGAGA+GGG - chr1_3:70244847-70244866 Msa0137650:five_prime_UTR 40.0%
TGCTTCTCTCTCGTTCTCTT+TGG - chr1_3:70238178-70238197 Msa0137650:three_prime_UTR 45.0%
TCACCAATGTCTTGCGTTCA+TGG - chr1_3:70238922-70238941 Msa0137650:CDS 45.0%
AGGTGGAGAAAGGATCTTCA+TGG - chr1_3:70239192-70239211 Msa0137650:CDS 45.0%
GGTGGAGAAAGGATCTTCAT+GGG - chr1_3:70239193-70239212 Msa0137650:CDS 45.0%
AGGATCTTCATGGGAATTGG+AGG - chr1_3:70239202-70239221 Msa0137650:CDS 45.0%
TTCATTCCAAGGAAGGTCCT+TGG + chr1_3:70239228-70239247 None:intergenic 45.0%
AGGACCTTCCTTGGAATGAA+TGG - chr1_3:70239228-70239247 Msa0137650:CDS 45.0%
TTGCTTCCATTGTTGGACGA+TGG + chr1_3:70239521-70239540 None:intergenic 45.0%
ACATAACCTCAAACCTTCGG+GGG - chr1_3:70239573-70239592 Msa0137650:CDS 45.0%
CACTTTCGTCCTACTGGTAT+TGG - chr1_3:70239975-70239994 Msa0137650:five_prime_UTR 45.0%
GCATCAAAGCCAATACCAGT+AGG + chr1_3:70239987-70240006 None:intergenic 45.0%
AATGTGCGGAGAAATCTGGA+GGG + chr1_3:70240242-70240261 None:intergenic 45.0%
AAATGTGCGGAGAAATCTGG+AGG + chr1_3:70240243-70240262 None:intergenic 45.0%
CAAGTGCAATCCCTTACCAA+AGG + chr1_3:70240346-70240365 None:intergenic 45.0%
CTTTGGTAAGGGATTGCACT+TGG - chr1_3:70240344-70240363 Msa0137650:five_prime_UTR 45.0%
CTTTGTGGCACCAAAGTTAC+CGG - chr1_3:70240376-70240395 Msa0137650:five_prime_UTR 45.0%
CATTCAAAGGCCGGTAACTT+TGG + chr1_3:70240389-70240408 None:intergenic 45.0%
ATGCCATAGGATGAAAGGAG+CGG - chr1_3:70240414-70240433 Msa0137650:five_prime_UTR 45.0%
AAACCGCTCCTTTCATCCTA+TGG + chr1_3:70240420-70240439 None:intergenic 45.0%
! TGGGGTGAGTTTAGGGTTTA+GGG + chr1_3:70240516-70240535 None:intergenic 45.0%
! TTGGGGTGAGTTTAGGGTTT+AGG + chr1_3:70240517-70240536 None:intergenic 45.0%
! CTGTCATTTGGGGTGAGTTT+AGG + chr1_3:70240524-70240543 None:intergenic 45.0%
CAAACTTGATCAAGTGGGTG+TGG + chr1_3:70240737-70240756 None:intergenic 45.0%
CACACCCACTTGATCAAGTT+TGG - chr1_3:70240735-70240754 Msa0137650:five_prime_UTR 45.0%
ATACCCAAAACGACGAGAGT+TGG + chr1_3:70238563-70238582 None:intergenic 45.0%
GACCAAGAAACAACCGTTCT+TGG + chr1_3:70240861-70240880 None:intergenic 45.0%
AAAGGTTCATGCCATGACTG+TGG - chr1_3:70241034-70241053 Msa0137650:five_prime_UTR 45.0%
ATCACTAAACTGCCCGCATT+TGG + chr1_3:70241114-70241133 None:intergenic 45.0%
CATGGCCTTCTAATGAAGCT+TGG - chr1_3:70241344-70241363 Msa0137650:five_prime_UTR 45.0%
! TTCACCCAGACACTGTTTCT+TGG - chr1_3:70241462-70241481 Msa0137650:five_prime_UTR 45.0%
GCATTCCAAGAAACAGTGTC+TGG + chr1_3:70241470-70241489 None:intergenic 45.0%
TGCAATGGGGTTGAAGGATT+TGG - chr1_3:70241613-70241632 Msa0137650:five_prime_UTR 45.0%
GCAATGGGGTTGAAGGATTT+GGG - chr1_3:70241614-70241633 Msa0137650:five_prime_UTR 45.0%
CAATGGGGTTGAAGGATTTG+GGG - chr1_3:70241615-70241634 Msa0137650:five_prime_UTR 45.0%
AACTTGTCGGCATATGAGCA+AGG - chr1_3:70242223-70242242 Msa0137650:five_prime_UTR 45.0%
ACTTGTCGGCATATGAGCAA+GGG - chr1_3:70242224-70242243 Msa0137650:five_prime_UTR 45.0%
TCTCTGTGGTATCTCGGAAA+AGG + chr1_3:70242362-70242381 None:intergenic 45.0%
! TTTTCCGAGATACCACAGAG+AGG - chr1_3:70242361-70242380 Msa0137650:five_prime_UTR 45.0%
CATGAGACTATACCTCTCTG+TGG + chr1_3:70242376-70242395 None:intergenic 45.0%
! CACAGAGAGGTATAGTCTCA+TGG - chr1_3:70242374-70242393 Msa0137650:five_prime_UTR 45.0%
GTCTCATGGTCTGCAATGAT+TGG - chr1_3:70242388-70242407 Msa0137650:five_prime_UTR 45.0%
TCATGGTCTGCAATGATTGG+AGG - chr1_3:70242391-70242410 Msa0137650:five_prime_UTR 45.0%
CATGGTCTGCAATGATTGGA+GGG - chr1_3:70242392-70242411 Msa0137650:five_prime_UTR 45.0%
! TGCATGTAATCACGCTGGTT+TGG - chr1_3:70242516-70242535 Msa0137650:intron 45.0%
!! TCACGCTGGTTTGGTAAATG+AGG - chr1_3:70242525-70242544 Msa0137650:intron 45.0%
!! CACGCTGGTTTGGTAAATGA+GGG - chr1_3:70242526-70242545 Msa0137650:intron 45.0%
!! ACGCTGGTTTGGTAAATGAG+GGG - chr1_3:70242527-70242546 Msa0137650:intron 45.0%
CAAGCATAGTGCTCTTGTGT+TGG + chr1_3:70242595-70242614 None:intergenic 45.0%
GCTTGCATGATTGATCTCCT+TGG - chr1_3:70242610-70242629 Msa0137650:intron 45.0%
! TCCATTCCATTTGAAGCCGA+TGG - chr1_3:70242673-70242692 Msa0137650:intron 45.0%
!! TCCATCGGCTTCAAATGGAA+TGG + chr1_3:70242677-70242696 None:intergenic 45.0%
!! ACTCTAGAGCCAGACAAATC+TGG - chr1_3:70242778-70242797 Msa0137650:intron 45.0%
TTTATGCATCAGCAGGGATG+TGG - chr1_3:70242824-70242843 Msa0137650:intron 45.0%
TTATGCATCAGCAGGGATGT+GGG - chr1_3:70242825-70242844 Msa0137650:intron 45.0%
AGCAATGTGAAGAAGGAACC+TGG - chr1_3:70242883-70242902 Msa0137650:intron 45.0%
AGAAGGAACCTGGAATGAGT+TGG - chr1_3:70242893-70242912 Msa0137650:intron 45.0%
! ACCTGGAATGAGTTGGATTG+AGG - chr1_3:70242900-70242919 Msa0137650:intron 45.0%
ACCTCAATCCAACTCATTCC+AGG + chr1_3:70242904-70242923 None:intergenic 45.0%
GTTGGATTGAGGTCAAAGAC+AGG - chr1_3:70242911-70242930 Msa0137650:intron 45.0%
!! TCACAGTGAGAAACTTGCTG+TGG - chr1_3:70243098-70243117 Msa0137650:intron 45.0%
!!! GAGAAACTTGCTGTGGCTTT+TGG - chr1_3:70243105-70243124 Msa0137650:intron 45.0%
! GGATATGTTGTCGTGATGGA+GGG + chr1_3:70243538-70243557 None:intergenic 45.0%
TGGATATGTTGTCGTGATGG+AGG + chr1_3:70243539-70243558 None:intergenic 45.0%
GGTTGGATATGTTGTCGTGA+TGG + chr1_3:70243542-70243561 None:intergenic 45.0%
GACAACATATCCAACCTCAC+TGG - chr1_3:70243546-70243565 Msa0137650:five_prime_UTR 45.0%
CCTCAGCAACAACTGGAAAT+TGG + chr1_3:70243598-70243617 None:intergenic 45.0%
CCAATTTCCAGTTGTTGCTG+AGG - chr1_3:70243595-70243614 Msa0137650:five_prime_UTR 45.0%
CAACAATCCTCAGCAACAAC+TGG + chr1_3:70243605-70243624 None:intergenic 45.0%
AGCAGTTCTGTTGTCCCTTT+AGG - chr1_3:70243662-70243681 Msa0137650:intron 45.0%
! GTTCAATAGCTTGTGATCGG+AGG - chr1_3:70243879-70243898 Msa0137650:five_prime_UTR 45.0%
GAGACAGTGTGGTCTAGATA+TGG + chr1_3:70243909-70243928 None:intergenic 45.0%
TCCAACAAGATGGGGTGAAA+GGG + chr1_3:70244155-70244174 None:intergenic 45.0%
TTCCAACAAGATGGGGTGAA+AGG + chr1_3:70244156-70244175 None:intergenic 45.0%
CACCCCATCTTGTTGGAATA+TGG - chr1_3:70244158-70244177 Msa0137650:intron 45.0%
GAAAGAAGAGATCGCAGAAG+TGG - chr1_3:70244208-70244227 Msa0137650:intron 45.0%
! AGTGGAGCAATGGATGGATT+TGG - chr1_3:70244226-70244245 Msa0137650:intron 45.0%
! GAGCAATGGATGGATTTGGA+TGG - chr1_3:70244230-70244249 Msa0137650:intron 45.0%
TTGCAGGGAAAGAGCCAAAG+AGG + chr1_3:70238241-70238260 None:intergenic 50.0%
! GTTTCTGAGAATTGGGTGGC+GGG + chr1_3:70238521-70238540 None:intergenic 50.0%
! GGTTTCTGAGAATTGGGTGG+CGG + chr1_3:70238522-70238541 None:intergenic 50.0%
TTCATGGGAATTGGAGGCCA+AGG - chr1_3:70239208-70239227 Msa0137650:CDS 50.0%
TAAGGTCAGATCAGGCAACG+TGG - chr1_3:70239806-70239825 Msa0137650:five_prime_UTR 50.0%
! GTTACTGAAAGTGTGGGTGC+TGG - chr1_3:70239855-70239874 Msa0137650:five_prime_UTR 50.0%
GGGTTACACTTTCGTCCTAC+TGG - chr1_3:70239969-70239988 Msa0137650:five_prime_UTR 50.0%
GCAGAGAAGTTAGAGTCGCA+GGG + chr1_3:70240559-70240578 None:intergenic 50.0%
AGCAGAGAAGTTAGAGTCGC+AGG + chr1_3:70240560-70240579 None:intergenic 50.0%
!! GTTTCTGAGACTTGAGTGGC+GGG + chr1_3:70240766-70240785 None:intergenic 50.0%
!! GGTTTCTGAGACTTGAGTGG+CGG + chr1_3:70240767-70240786 None:intergenic 50.0%
ATGCCATGACTGTGGTCTCA+GGG - chr1_3:70241042-70241061 Msa0137650:five_prime_UTR 50.0%
AAACCCTGAGACCACAGTCA+TGG + chr1_3:70241048-70241067 None:intergenic 50.0%
TGAATGCCTGTGCTGGATTG+CGG - chr1_3:70241297-70241316 Msa0137650:five_prime_UTR 50.0%
ATGTGCTGCAATGGGGTTGA+AGG - chr1_3:70241607-70241626 Msa0137650:five_prime_UTR 50.0%
ATCTCTGGTTACTCGCAGTG+TGG - chr1_3:70241800-70241819 Msa0137650:five_prime_UTR 50.0%
AGAGCGCACTTGGGAAGATT+TGG - chr1_3:70242063-70242082 Msa0137650:five_prime_UTR 50.0%
TCAACATGGGGATGCAGAAG+AGG - chr1_3:70242117-70242136 Msa0137650:five_prime_UTR 50.0%
GAACTGCAGACAAACGGATC+AGG + chr1_3:70242184-70242203 None:intergenic 50.0%
GTCTGCAATGATTGGAGGGT+TGG - chr1_3:70242396-70242415 Msa0137650:five_prime_UTR 50.0%
!! ATTGGAGGGTTGGCTCAACA+TGG - chr1_3:70242406-70242425 Msa0137650:intron 50.0%
CTCTGTGCATGTAATCACGC+TGG - chr1_3:70242511-70242530 Msa0137650:intron 50.0%
!! ACGGATCCATCGGCTTCAAA+TGG + chr1_3:70242682-70242701 None:intergenic 50.0%
TTGAAGCCGATGGATCCGTT+TGG - chr1_3:70242683-70242702 Msa0137650:intron 50.0%
TGAAGCCGATGGATCCGTTT+GGG - chr1_3:70242684-70242703 Msa0137650:intron 50.0%
TTGGTGAGAAAGCTGCAGAG+AGG - chr1_3:70242749-70242768 Msa0137650:intron 50.0%
GGATTAATTGCCACACCACC+TGG - chr1_3:70243126-70243145 Msa0137650:intron 50.0%
ACTCTTATTGGAGCTCCAGG+TGG + chr1_3:70243144-70243163 None:intergenic 50.0%
ACGAATGACACGGTAATCCG+TGG - chr1_3:70243388-70243407 Msa0137650:intron 50.0%
! GTTGTCGTGATGGAGGGATA+TGG + chr1_3:70243532-70243551 None:intergenic 50.0%
CCATCGTCTTCACAACGGAA+AGG + chr1_3:70243572-70243591 None:intergenic 50.0%
CCTTTCCGTTGTGAAGACGA+TGG - chr1_3:70243569-70243588 Msa0137650:five_prime_UTR 50.0%
TGGAGGCAGTGATCGTTACT+TGG - chr1_3:70243639-70243658 Msa0137650:intron 50.0%
TCTGAGCGACGAAGAAACGA+CGG - chr1_3:70243689-70243708 Msa0137650:intron 50.0%
CTAGACCACACTGTCTCTTC+AGG - chr1_3:70243912-70243931 Msa0137650:five_prime_UTR 50.0%
! ATTGGCCTGAAGAGACAGTG+TGG + chr1_3:70243920-70243939 None:intergenic 50.0%
CATTGGTCCTACAGGAAGGT+GGG + chr1_3:70244023-70244042 None:intergenic 50.0%
! TGTGCATTGGTCCTACAGGA+AGG + chr1_3:70244027-70244046 None:intergenic 50.0%
! ACTGTGTGCATTGGTCCTAC+AGG + chr1_3:70244031-70244050 None:intergenic 50.0%
CCAACAAGATGGGGTGAAAG+GGG + chr1_3:70244154-70244173 None:intergenic 50.0%
TGGCAGCAGTTATGCAGCAA+AGG - chr1_3:70244186-70244205 Msa0137650:intron 50.0%
AGATCGCAGAAGTGGAGCAA+TGG - chr1_3:70244216-70244235 Msa0137650:intron 50.0%
TTGGAACCGAGAGTCTCGTG+CGG - chr1_3:70238197-70238216 Msa0137650:three_prime_UTR 55.0%
GAGAAACCGCACGAGACTCT+CGG + chr1_3:70238206-70238225 None:intergenic 55.0%
AATACCTTCTCAGCCCCCGA+AGG + chr1_3:70239589-70239608 None:intergenic 55.0%
CATGCCATGACTGTGGTCTC+AGG - chr1_3:70241041-70241060 Msa0137650:five_prime_UTR 55.0%
GCATTCCACGAAACAACGCC+TGG + chr1_3:70241167-70241186 None:intergenic 55.0%
GAATGCCTGTGCTGGATTGC+GGG - chr1_3:70241298-70241317 Msa0137650:five_prime_UTR 55.0%
! GGATTGCGGGATGGAGGTAT+CGG - chr1_3:70241311-70241330 Msa0137650:five_prime_UTR 55.0%
!! GGATGGAGGTATCGGAAGGA+CGG - chr1_3:70241319-70241338 Msa0137650:five_prime_UTR 55.0%
! GGTATCGGAAGGACGGTTCA+TGG - chr1_3:70241326-70241345 Msa0137650:five_prime_UTR 55.0%
GCAGGGAATGCTCTGATCTC+TGG - chr1_3:70241785-70241804 Msa0137650:five_prime_UTR 55.0%
GCGCACTTGGGAAGATTTGG+TGG - chr1_3:70242066-70242085 Msa0137650:five_prime_UTR 55.0%
!! GGGTTGGCTCAACATGGTCA+TGG - chr1_3:70242412-70242431 Msa0137650:intron 55.0%
GAAGCCGATGGATCCGTTTG+GGG - chr1_3:70242685-70242704 Msa0137650:intron 55.0%
AAGCCGATGGATCCGTTTGG+GGG - chr1_3:70242686-70242705 Msa0137650:intron 55.0%
TATTGGAGCTCCAGGTGGTG+TGG + chr1_3:70243139-70243158 None:intergenic 55.0%
AACGGAAAGGCCAGTGAGGT+TGG + chr1_3:70243559-70243578 None:intergenic 55.0%
TCACAACGGAAAGGCCAGTG+AGG + chr1_3:70243563-70243582 None:intergenic 55.0%
GGGCACCATCGTCTTCACAA+CGG + chr1_3:70243577-70243596 None:intergenic 55.0%
GTCGCTCAGAGGCTCCTAAA+GGG + chr1_3:70243679-70243698 None:intergenic 55.0%
GTCGTTTCTTCGTCGCTCAG+AGG + chr1_3:70243690-70243709 None:intergenic 55.0%
ACGAAGAAACGACGGCTGTG+AGG - chr1_3:70243697-70243716 Msa0137650:intron 55.0%
CGAAGAAACGACGGCTGTGA+GGG - chr1_3:70243698-70243717 Msa0137650:intron 55.0%
! GCATTGGTCCTACAGGAAGG+TGG + chr1_3:70244024-70244043 None:intergenic 55.0%
CCCCTTTCACCCCATCTTGT+TGG - chr1_3:70244151-70244170 Msa0137650:intron 55.0%
CGCAGAAGTGGAGCAATGGA+TGG - chr1_3:70244220-70244239 Msa0137650:intron 55.0%
TGGAGGCCAAGGACCTTCCT+TGG - chr1_3:70239219-70239238 Msa0137650:CDS 60.0%
TCTCAGCCCCCGAAGGTTTG+AGG + chr1_3:70239582-70239601 None:intergenic 60.0%
CAAACCTTCGGGGGCTGAGA+AGG - chr1_3:70239582-70239601 Msa0137650:CDS 60.0%
!! CTGAAAGTGTGGGTGCTGGC+TGG - chr1_3:70239859-70239878 Msa0137650:five_prime_UTR 60.0%
! TGGAGCCAGGCGTTGTTTCG+TGG - chr1_3:70241159-70241178 Msa0137650:five_prime_UTR 60.0%
TCCATCCCGCAATCCAGCAC+AGG + chr1_3:70241306-70241325 None:intergenic 60.0%
TGTGCTGGATTGCGGGATGG+AGG - chr1_3:70241305-70241324 Msa0137650:five_prime_UTR 60.0%
!! TGCGGGATGGAGGTATCGGA+AGG - chr1_3:70241315-70241334 Msa0137650:five_prime_UTR 60.0%
AGCCGATGGATCCGTTTGGG+GGG - chr1_3:70242687-70242706 Msa0137650:intron 60.0%
!! ACCAAGAAGCGCCCCCCAAA+CGG + chr1_3:70242701-70242720 None:intergenic 60.0%
CGTCGCTCAGAGGCTCCTAA+AGG + chr1_3:70243680-70243699 None:intergenic 60.0%
GCCTGTGCTGGATTGCGGGA+TGG - chr1_3:70241302-70241321 Msa0137650:five_prime_UTR 65.0%
CGCCCCCCAAACGGATCCAT+CGG + chr1_3:70242692-70242711 None:intergenic 65.0%
!! TCCGTTTGGGGGGCGCTTCT+TGG - chr1_3:70242697-70242716 Msa0137650:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70238146 70244957 70238146 ID=Msa0137650;Name=Msa0137650
chr1_3 mRNA 70238146 70244957 70238146 ID=Msa0137650-mRNA-1;Parent=Msa0137650;Name=Msa0137650-mRNA-1;_AED=0.04;_eAED=0.04;_QI=3355|0.75|0.88|1|0.12|0.11|9|138|226
chr1_3 exon 70238146 70238289 70238146 ID=Msa0137650-mRNA-1:exon:24320;Parent=Msa0137650-mRNA-1
chr1_3 exon 70238777 70238993 70238777 ID=Msa0137650-mRNA-1:exon:24319;Parent=Msa0137650-mRNA-1
chr1_3 exon 70239164 70239300 70239164 ID=Msa0137650-mRNA-1:exon:24318;Parent=Msa0137650-mRNA-1
chr1_3 exon 70239367 70242420 70239367 ID=Msa0137650-mRNA-1:exon:24317;Parent=Msa0137650-mRNA-1
chr1_3 exon 70243182 70243334 70243182 ID=Msa0137650-mRNA-1:exon:24316;Parent=Msa0137650-mRNA-1
chr1_3 exon 70243500 70243640 70243500 ID=Msa0137650-mRNA-1:exon:24315;Parent=Msa0137650-mRNA-1
chr1_3 exon 70243841 70243946 70243841 ID=Msa0137650-mRNA-1:exon:24314;Parent=Msa0137650-mRNA-1
chr1_3 exon 70244282 70244368 70244282 ID=Msa0137650-mRNA-1:exon:24313;Parent=Msa0137650-mRNA-1
chr1_3 exon 70244823 70244957 70244823 ID=Msa0137650-mRNA-1:exon:24312;Parent=Msa0137650-mRNA-1
chr1_3 five_prime_UTR 70244823 70244957 70244823 ID=Msa0137650-mRNA-1:five_prime_utr;Parent=Msa0137650-mRNA-1
chr1_3 five_prime_UTR 70244282 70244368 70244282 ID=Msa0137650-mRNA-1:five_prime_utr;Parent=Msa0137650-mRNA-1
chr1_3 five_prime_UTR 70243841 70243946 70243841 ID=Msa0137650-mRNA-1:five_prime_utr;Parent=Msa0137650-mRNA-1
chr1_3 five_prime_UTR 70243500 70243640 70243500 ID=Msa0137650-mRNA-1:five_prime_utr;Parent=Msa0137650-mRNA-1
chr1_3 five_prime_UTR 70243182 70243334 70243182 ID=Msa0137650-mRNA-1:five_prime_utr;Parent=Msa0137650-mRNA-1
chr1_3 five_prime_UTR 70239688 70242420 70239688 ID=Msa0137650-mRNA-1:five_prime_utr;Parent=Msa0137650-mRNA-1
chr1_3 CDS 70239367 70239687 70239367 ID=Msa0137650-mRNA-1:cds;Parent=Msa0137650-mRNA-1
chr1_3 CDS 70239164 70239300 70239164 ID=Msa0137650-mRNA-1:cds;Parent=Msa0137650-mRNA-1
chr1_3 CDS 70238777 70238993 70238777 ID=Msa0137650-mRNA-1:cds;Parent=Msa0137650-mRNA-1
chr1_3 CDS 70238284 70238289 70238284 ID=Msa0137650-mRNA-1:cds;Parent=Msa0137650-mRNA-1
chr1_3 three_prime_UTR 70238146 70238283 70238146 ID=Msa0137650-mRNA-1:three_prime_utr;Parent=Msa0137650-mRNA-1
Gene Sequence

>Msa0137650

ATGTTGTTACTTTCTCTTCCCCTTTTTCCCTCCTTTTTTTCTTCTTTCTTTTTCTCTTTTAAAACGAAGACAGAAGAAATAGGGAAAGAAGAGAAAGGAAACACTCAAGATTGCCATATCCCTCCATCACGACAACATATCCAACCTCACTGGCCTTTCCGTTGTGAAGACGATGGTGCCCAATTTCCAGTTGTTGCTGAGGATTGTTGTTCGATTCTTTTGATGGAGGCAGTGATCGTTACTTGGAGCAGTTCTGTTGTCCCTTTAGGAGCCTCTGAGCGACGAAGAAACGACGGCTGTGAGGGAATCAATTTTGTTAATAAGTTCCCTCACTGTTTTTGTGAAGATTATGTACTTCCACACATCCCTATTGCTTGTAAAATAATTACGAAGGGAAGTTCAATAGCTTGTGATCGGAGGAGTACCATATCTAGACCACACTGTCTCTTCAGGCCAATGTATGTATTCTACACTGCGTTTACCTTGACAGATAGAAAAACCCCTTTCACCCCATCTTGTTGGAATATGGTCATATGGCAGCAGTTATGCAGCAAAGGAAAGAAGAGATCGCAGAAGTGGAGCAATGGATGGATTTGGATGGCACAGATGCATCAACCTACTAGAATCACGGCTTTCTTTTGGCATAAGCAATCCTGCTTGAGTGTTTCCAAAAAGGCTTAG
Protein sequence

>Msa0137650

MLLLSLPLFPSFFSSFFFSFKTKTEEIGKEEKGNTQDCHIPPSRQHIQPHWPFRCEDDGAQFPVVAEDCCSILLMEAVIVTWSSSVVPLGASERRRNDGCEGINFVNKFPHCFCEDYVLPHIPIACKIITKGSSIACDRRSTISRPHCLFRPMYVFYTAFTLTDRKTPFTPSCWNMVIWQQLCSKGKKRSQKWSNGWIWMAQMHQPTRITAFFWHKQSCLSVSKKA*