Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0141480 | 0.823471 | 1.360695e-53 | -8.615850e-47 |
| Msa0141480 | Msa0157290 | 0.823461 | 1.368275e-53 | -8.615850e-47 |
| Msa0141480 | Msa0503580 | 0.803591 | 3.239777e-49 | -8.615850e-47 |
| Msa0141480 | Msa0880140 | 0.823308 | 1.485691e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGATATACATGAAACAAAT+AGG | 0.253662 | 1_3:+76484111 | None:intergenic |
| TATTGTATATCGGCAGATTC+TGG | 0.351603 | 1_3:+76482978 | Msa0141490:intron |
| AACTTTGGGGTATTGTATAT+CGG | 0.379843 | 1_3:+76482968 | Msa0141490:intron |
| TCGGCAGATTCTGGTCTTGA+TGG | 0.448649 | 1_3:+76482987 | Msa0141490:intron |
| CAAACACACTTGGTCAATAC+AGG | 0.459912 | 1_3:+76483745 | Msa0141490:CDS |
| AGATATACATGAAACAAATA+GGG | 0.461600 | 1_3:+76484112 | None:intergenic |
| ACCCTCTAATCACCTCATCT+TGG | 0.476483 | 1_3:+76484985 | None:intergenic |
| GGTAAATTCTCATCTTCGAT+TGG | 0.501103 | 1_3:-76483800 | Msa0141480:CDS |
| GATTCTGGTCTTGATGGTGG+TGG | 0.501327 | 1_3:+76482993 | Msa0141490:intron |
| CTCATAAGTTTCTCTACTGT+GGG | 0.503459 | 1_3:-76483067 | Msa0141480:CDS |
| TCTCATAAGTTTCTCTACTG+TGG | 0.508487 | 1_3:-76483068 | Msa0141480:CDS |
| AATATAGGCACTCACTTTGG+AGG | 0.519418 | 1_3:+76482550 | None:intergenic |
| TGCACACCGTCGTTCTCTGA+AGG | 0.568451 | 1_3:+76484153 | None:intergenic |
| GGGCCACTGAATGCTGTCGT+TGG | 0.588346 | 1_3:-76483047 | Msa0141480:CDS |
| TACAGGCAGTAGATCGTAGA+GGG | 0.614639 | 1_3:+76483762 | Msa0141490:CDS |
| TTTCCAACGACAGCATTCAG+TGG | 0.626858 | 1_3:+76483044 | Msa0141490:intron |
| GCAGATTCTGGTCTTGATGG+TGG | 0.650922 | 1_3:+76482990 | Msa0141490:intron |
| GGAATAGAGACTCCAAGATG+AGG | 0.654282 | 1_3:-76484997 | Msa0141480:intron |
| ATACAGGCAGTAGATCGTAG+AGG | 0.684536 | 1_3:+76483761 | Msa0141490:CDS |
| AGGCAGTAGATCGTAGAGGG+AGG | 0.690988 | 1_3:+76483765 | Msa0141490:CDS |
| AGAGGACCTTCAGAGAACGA+CGG | 0.758891 | 1_3:-76484159 | Msa0141480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGGTTTTATTTTTATATT+TGG | - | chr1_3:76482655-76482674 | Msa0141480:intron | 10.0% |
| !!! | ATGGTTTTATTTTTATATTT+GGG | - | chr1_3:76482656-76482675 | Msa0141480:intron | 10.0% |
| !!! | TATATAATTTTTTAGTATTG+TGG | - | chr1_3:76483007-76483026 | Msa0141480:CDS | 10.0% |
| !!! | TTGTTTTTTTTTTTTTTGTG+TGG | - | chr1_3:76482444-76482463 | Msa0141480:intron | 15.0% |
| !!! | TGGTTTTATTTTTATATTTG+GGG | - | chr1_3:76482657-76482676 | Msa0141480:intron | 15.0% |
| !! | AAAACAAACTTAAACAATAT+AGG | + | chr1_3:76483959-76483978 | None:intergenic | 15.0% |
| !!! | ATTATCTTATTTTCTTTTGT+AGG | - | chr1_3:76484585-76484604 | Msa0141480:intron | 15.0% |
| !!! | CTTTAAAAGTTAAAACTAAC+AGG | - | chr1_3:76481572-76481591 | Msa0141480:intron | 20.0% |
| !! | TTGAAAATAAAATGAGATGA+TGG | - | chr1_3:76481730-76481749 | Msa0141480:intron | 20.0% |
| !! | TGATATTAATTTCTTGATGA+AGG | - | chr1_3:76481807-76481826 | Msa0141480:intron | 20.0% |
| !!! | TGATTATTTCTGTACTTAAA+TGG | - | chr1_3:76481852-76481871 | Msa0141480:intron | 20.0% |
| !! | AAACTCATAATATGATATTC+AGG | - | chr1_3:76482175-76482194 | Msa0141480:intron | 20.0% |
| !! | AACTCATAATATGATATTCA+GGG | - | chr1_3:76482176-76482195 | Msa0141480:intron | 20.0% |
| !! | CTATACACTAATTCTTAATA+AGG | + | chr1_3:76482224-76482243 | None:intergenic | 20.0% |
| !! | AGATATACATGAAACAAATA+GGG | + | chr1_3:76482382-76482401 | None:intergenic | 20.0% |
| !! | TAGATATACATGAAACAAAT+AGG | + | chr1_3:76482383-76482402 | None:intergenic | 20.0% |
| !! | TACATAAATAAATAGATTCG+AGG | + | chr1_3:76482576-76482595 | None:intergenic | 20.0% |
| !!! | ATATTTTTGCTTCTATCTTT+TGG | - | chr1_3:76484217-76484236 | Msa0141480:intron | 20.0% |
| !!! | TATTTTTGCTTCTATCTTTT+GGG | - | chr1_3:76484218-76484237 | Msa0141480:intron | 20.0% |
| !! | GTTTAGTTATCAAAAGAAAA+AGG | + | chr1_3:76484261-76484280 | None:intergenic | 20.0% |
| !!! | TTCTCTTAATTTCCTTATTT+AGG | - | chr1_3:76484687-76484706 | Msa0141480:intron | 20.0% |
| !! | CAACATAAAAAACACTAATA+GGG | + | chr1_3:76484811-76484830 | None:intergenic | 20.0% |
| !! | ACTTCAAAAATGAAACATTA+AGG | + | chr1_3:76484932-76484951 | None:intergenic | 20.0% |
| !!! | AACATTTTTTTGCCAATGAA+GGG | - | chr1_3:76481930-76481949 | Msa0141480:intron | 25.0% |
| ! | CATTGAAAAATTGACAAATC+AGG | - | chr1_3:76482073-76482092 | Msa0141480:intron | 25.0% |
| ! | AAAAAAAAAAGTCCATGAAC+AGG | + | chr1_3:76482129-76482148 | None:intergenic | 25.0% |
| !! | TCTTAATAAGGAATTTTGCA+GGG | + | chr1_3:76482212-76482231 | None:intergenic | 25.0% |
| !! | TTCTTAATAAGGAATTTTGC+AGG | + | chr1_3:76482213-76482232 | None:intergenic | 25.0% |
| ! | TTTGTTTCATGTATATCTAC+TGG | - | chr1_3:76482384-76482403 | Msa0141480:intron | 25.0% |
| ! | TATGGAAATGTTGAAGAAAA+TGG | - | chr1_3:76482637-76482656 | Msa0141480:intron | 25.0% |
| ! | GTTTCTTAATTTCCCTATTT+AGG | - | chr1_3:76483078-76483097 | Msa0141480:intron | 25.0% |
| ! | AACACCAACTCTTATATATA+GGG | + | chr1_3:76483118-76483137 | Msa0141490:intron | 25.0% |
| ! | AAACACCAACTCTTATATAT+AGG | + | chr1_3:76483119-76483138 | Msa0141490:intron | 25.0% |
| ! | AATAATGACAGTACAAATCA+AGG | + | chr1_3:76483279-76483298 | Msa0141490:intron | 25.0% |
| ! | TTTAGTTGTATGCTTGTATT+TGG | - | chr1_3:76483332-76483351 | Msa0141480:intron | 25.0% |
| !! | TAAGAAAACTCTAGAGAAAA+CGG | + | chr1_3:76483389-76483408 | Msa0141490:intron | 25.0% |
| ! | ATGTTAGATTAGAAACTTTG+GGG | + | chr1_3:76483539-76483558 | Msa0141490:intron | 25.0% |
| ! | GATGTTAGATTAGAAACTTT+GGG | + | chr1_3:76483540-76483559 | Msa0141490:intron | 25.0% |
| ! | AGATGTTAGATTAGAAACTT+TGG | + | chr1_3:76483541-76483560 | Msa0141490:intron | 25.0% |
| ! | CAATTGAAACTCAAATTCAA+AGG | + | chr1_3:76484060-76484079 | None:intergenic | 25.0% |
| !! | TTTAACATCATTGCAGTTTT+TGG | - | chr1_3:76484170-76484189 | Msa0141480:intron | 25.0% |
| ! | AAAAGAAAAAGGTGAAAGAT+GGG | + | chr1_3:76484250-76484269 | None:intergenic | 25.0% |
| !!! | TTCTTTTGATAACTAAACTC+TGG | - | chr1_3:76484263-76484282 | Msa0141480:intron | 25.0% |
| !! | GGTTAAACTTTTGTCTATTT+TGG | - | chr1_3:76484364-76484383 | Msa0141480:intron | 25.0% |
| ! | TCATATAAATCTTCAACCTT+CGG | + | chr1_3:76484460-76484479 | None:intergenic | 25.0% |
| !! | TGTTATGTTTTCTCTTTTCA+AGG | - | chr1_3:76484504-76484523 | Msa0141480:intron | 25.0% |
| !! | GTTATGTTTTCTCTTTTCAA+GGG | - | chr1_3:76484505-76484524 | Msa0141480:intron | 25.0% |
| !!! | GGACTATTTTTTATGTTACT+TGG | - | chr1_3:76484649-76484668 | Msa0141480:intron | 25.0% |
| ! | TATCAAGTTAGTATCAAACA+GGG | - | chr1_3:76484757-76484776 | Msa0141480:intron | 25.0% |
| ! | GCAACATAAAAAACACTAAT+AGG | + | chr1_3:76484812-76484831 | None:intergenic | 25.0% |
| ! | ACTAAACAGTAAACACTAAT+AGG | + | chr1_3:76484855-76484874 | None:intergenic | 25.0% |
| ! | TATTAGTGTTTACTGTTTAG+TGG | - | chr1_3:76484854-76484873 | Msa0141480:intron | 25.0% |
| ! | AAACATTAAGGATTTCAGTT+AGG | + | chr1_3:76484920-76484939 | None:intergenic | 25.0% |
| !! | TGCTATTTATTATTTAGCAG+TGG | - | chr1_3:76484974-76484993 | Msa0141480:intron | 25.0% |
| TAACAGGTTATATTCTGCTT+TGG | - | chr1_3:76481588-76481607 | Msa0141480:intron | 30.0% | |
| CTCTATATTTCTTTCCTTCT+GGG | + | chr1_3:76481649-76481668 | None:intergenic | 30.0% | |
| ACTCTATATTTCTTTCCTTC+TGG | + | chr1_3:76481650-76481669 | None:intergenic | 30.0% | |
| AGAAGGAAAGAAATATAGAG+TGG | - | chr1_3:76481649-76481668 | Msa0141480:intron | 30.0% | |
| GAAGGAAAGAAATATAGAGT+GGG | - | chr1_3:76481650-76481669 | Msa0141480:intron | 30.0% | |
| !!! | GAACATTTTTTTGCCAATGA+AGG | - | chr1_3:76481929-76481948 | Msa0141480:intron | 30.0% |
| !!! | GAACTGATTTTTTTTTCTCG+AGG | - | chr1_3:76482304-76482323 | Msa0141480:intron | 30.0% |
| TGGCTTCAATTCAGATATTT+AGG | - | chr1_3:76482404-76482423 | Msa0141480:intron | 30.0% | |
| ATATTTGGGGAATGAAGAAT+TGG | - | chr1_3:76482670-76482689 | Msa0141480:intron | 30.0% | |
| AGTATTGTGGATATTCTCTT+AGG | - | chr1_3:76483020-76483039 | Msa0141480:CDS | 30.0% | |
| ACACTACTTAGTCCTAAATA+GGG | + | chr1_3:76483093-76483112 | Msa0141490:intron | 30.0% | |
| TACACTACTTAGTCCTAAAT+AGG | + | chr1_3:76483094-76483113 | Msa0141490:intron | 30.0% | |
| GTATCCCTATATATAAGAGT+TGG | - | chr1_3:76483111-76483130 | Msa0141480:intron | 30.0% | |
| ATTTGGAAACCTTTGTTGAA+CGG | - | chr1_3:76483349-76483368 | Msa0141480:intron | 30.0% | |
| AATAAAAGACCGTTCAACAA+AGG | + | chr1_3:76483361-76483380 | Msa0141490:intron | 30.0% | |
| AGAAACTTATGAGACTAGAT+GGG | + | chr1_3:76483417-76483436 | Msa0141490:intron | 30.0% | |
| !! | AACTTTGGGGTATTGTATAT+CGG | + | chr1_3:76483526-76483545 | Msa0141490:intron | 30.0% |
| ! | TTGTTTCGGTATTCTCTTTT+TGG | - | chr1_3:76483689-76483708 | Msa0141480:intron | 30.0% |
| ! | TTGATGTTGTTTGTGTTGAT+CGG | - | chr1_3:76483784-76483803 | Msa0141480:CDS | 30.0% |
| TATGCACAAACAAATACTTG+CGG | + | chr1_3:76483868-76483887 | None:intergenic | 30.0% | |
| TTGTGCATATTCTGTATAGA+TGG | - | chr1_3:76483879-76483898 | Msa0141480:intron | 30.0% | |
| CTGTAAACTAAAACCTTAAC+TGG | + | chr1_3:76483997-76484016 | None:intergenic | 30.0% | |
| !!! | TAAGGTTTTAGTTTACAGAG+TGG | - | chr1_3:76483999-76484018 | Msa0141480:intron | 30.0% |
| !!! | AAGGTTTTAGTTTACAGAGT+GGG | - | chr1_3:76484000-76484019 | Msa0141480:intron | 30.0% |
| !! | CTTCAAATGAAAAAGGTGTT+AGG | + | chr1_3:76484032-76484051 | None:intergenic | 30.0% |
| ! | TGAATTTGAGTTTCAATTGC+CGG | - | chr1_3:76484061-76484080 | Msa0141480:intron | 30.0% |
| ATGTTAAATAAGTGCTCATC+TGG | + | chr1_3:76484158-76484177 | None:intergenic | 30.0% | |
| CAAAAGAAAAAGGTGAAAGA+TGG | + | chr1_3:76484251-76484270 | None:intergenic | 30.0% | |
| GAGAAGTTGCTTCTATTTAA+TGG | - | chr1_3:76484343-76484362 | Msa0141480:intron | 30.0% | |
| GTCTTGAATCGCTATATATA+AGG | - | chr1_3:76484716-76484735 | Msa0141480:intron | 30.0% | |
| GTATCAAGTTAGTATCAAAC+AGG | - | chr1_3:76484756-76484775 | Msa0141480:intron | 30.0% | |
| CATATTTCACGGTACTATGT+GGG | + | chr1_3:76481625-76481644 | None:intergenic | 35.0% | |
| TCATATTTCACGGTACTATG+TGG | + | chr1_3:76481626-76481645 | None:intergenic | 35.0% | |
| GAAGTTATTCTGTGTCAAGA+TGG | - | chr1_3:76481829-76481848 | Msa0141480:intron | 35.0% | |
| TTATGAGTTTCTTGTCTACG+AGG | + | chr1_3:76482165-76482184 | None:intergenic | 35.0% | |
| !!! | TTTTTTCTCGAGGTGTATAG+AGG | - | chr1_3:76482314-76482333 | Msa0141480:intron | 35.0% |
| TTTCGATGAGAATTCACTTG+TGG | - | chr1_3:76482598-76482617 | Msa0141480:intron | 35.0% | |
| ! | GGTTTGTGGTCTTCATTTTA+TGG | - | chr1_3:76482619-76482638 | Msa0141480:intron | 35.0% |
| GGTAAATTCTCATCTTCGAT+TGG | - | chr1_3:76482691-76482710 | Msa0141480:intron | 35.0% | |
| !!! | ACTTTTGATGATGAAGCTCT+TGG | + | chr1_3:76482877-76482896 | Msa0141490:CDS | 35.0% |
| AATGACAGTACAAATCAAGG+AGG | + | chr1_3:76483276-76483295 | Msa0141490:intron | 35.0% | |
| GAGAAACTTATGAGACTAGA+TGG | + | chr1_3:76483418-76483437 | Msa0141490:intron | 35.0% | |
| TCTCATAAGTTTCTCTACTG+TGG | - | chr1_3:76483423-76483442 | Msa0141480:intron | 35.0% | |
| CTCATAAGTTTCTCTACTGT+GGG | - | chr1_3:76483424-76483443 | Msa0141480:intron | 35.0% | |
| !! | GTTTTGTTGAAAAAGGTTGG+TGG | + | chr1_3:76483479-76483498 | Msa0141490:intron | 35.0% |
| !!! | GTGGTTTTGTTGAAAAAGGT+TGG | + | chr1_3:76483482-76483501 | Msa0141490:intron | 35.0% |
| TATTGTATATCGGCAGATTC+TGG | + | chr1_3:76483516-76483535 | Msa0141490:intron | 35.0% | |
| ATTACATCTAGCAACTCTTG+CGG | - | chr1_3:76483583-76483602 | Msa0141480:intron | 35.0% | |
| AAACAAGAAAGAGGAATAGC+TGG | + | chr1_3:76483675-76483694 | Msa0141490:intron | 35.0% | |
| ! | GCTATTCCTCTTTCTTGTTT+CGG | - | chr1_3:76483675-76483694 | Msa0141480:intron | 35.0% |
| AGAATACCGAAACAAGAAAG+AGG | + | chr1_3:76483684-76483703 | Msa0141490:CDS | 35.0% | |
| !! | GTATTCTCTTTTTGGCCTTT+TGG | - | chr1_3:76483697-76483716 | Msa0141480:intron | 35.0% |
| !! | CTGCTGCTCTATTTTGTTAT+TGG | - | chr1_3:76483730-76483749 | Msa0141480:intron | 35.0% |
| !!! | CTGCTCTATTTTGTTATTGG+TGG | - | chr1_3:76483733-76483752 | Msa0141480:intron | 35.0% |
| GCAAACAAAGATGTTCACAA+TGG | + | chr1_3:76483825-76483844 | Msa0141490:CDS | 35.0% | |
| ACTCTAAACGAAAAGGATCA+TGG | + | chr1_3:76483916-76483935 | None:intergenic | 35.0% | |
| AACAATATAGGCACTCACTT+TGG | + | chr1_3:76483947-76483966 | None:intergenic | 35.0% | |
| GGTGCAACTTCAAATGAAAA+AGG | + | chr1_3:76484039-76484058 | None:intergenic | 35.0% | |
| ATTTGTTTGTTCCCCAATTG+TGG | - | chr1_3:76484388-76484407 | Msa0141480:intron | 35.0% | |
| AAGAATCAAGCACCACAATT+GGG | + | chr1_3:76484403-76484422 | None:intergenic | 35.0% | |
| AAAGAATCAAGCACCACAAT+TGG | + | chr1_3:76484404-76484423 | None:intergenic | 35.0% | |
| ! | ATTGTGGTGCTTGATTCTTT+TGG | - | chr1_3:76484404-76484423 | Msa0141480:intron | 35.0% |
| ! | TCAGAGTCTCAGATTTTCTT+AGG | - | chr1_3:76484628-76484647 | Msa0141480:intron | 35.0% |
| CAAGACTCTAGTCCTAAATA+AGG | + | chr1_3:76484702-76484721 | None:intergenic | 35.0% | |
| TCATAAGTGAGACATATCTG+AGG | + | chr1_3:76484897-76484916 | None:intergenic | 35.0% | |
| TCCAAGATGAGGTGATTAGA+GGG | - | chr1_3:76481505-76481524 | Msa0141480:intron | 40.0% | |
| ATTAGAGGGTCTTCTAGACT+TGG | - | chr1_3:76481519-76481538 | Msa0141480:intron | 40.0% | |
| TCCTTCTGGGTCATATTTCA+CGG | + | chr1_3:76481636-76481655 | None:intergenic | 40.0% | |
| !! | AGAAATATAGAGTGGGCTGT+AGG | - | chr1_3:76481657-76481676 | Msa0141480:intron | 40.0% |
| ! | GAACAATGGCGGAAAAGAAT+AGG | + | chr1_3:76481975-76481994 | None:intergenic | 40.0% |
| ATCATGATGCAGAACAATGG+CGG | + | chr1_3:76481986-76482005 | None:intergenic | 40.0% | |
| CTGATCATGATGCAGAACAA+TGG | + | chr1_3:76481989-76482008 | None:intergenic | 40.0% | |
| !!! | TATGCTGTTTTGCCATCGTT+TGG | - | chr1_3:76482491-76482510 | Msa0141480:intron | 40.0% |
| GAGAATTCACTTGTGGTTTG+TGG | - | chr1_3:76482605-76482624 | Msa0141480:intron | 40.0% | |
| CAAACACACTTGGTCAATAC+AGG | + | chr1_3:76482749-76482768 | None:intergenic | 40.0% | |
| ! | CTGTATTGACCAAGTGTGTT+TGG | - | chr1_3:76482747-76482766 | Msa0141480:intron | 40.0% |
| ACAGCATTACCAAACACACT+TGG | + | chr1_3:76482759-76482778 | None:intergenic | 40.0% | |
| !! | AGTGTGTTTGGTAATGCTGT+CGG | - | chr1_3:76482759-76482778 | Msa0141480:intron | 40.0% |
| AGAGTTGGAAAAACATGTGG+TGG | + | chr1_3:76482791-76482810 | None:intergenic | 40.0% | |
| TGGAGAGTTGGAAAAACATG+TGG | + | chr1_3:76482794-76482813 | None:intergenic | 40.0% | |
| AATCACAATGCTACTGTGCA+GGG | + | chr1_3:76482834-76482853 | None:intergenic | 40.0% | |
| !! | TCAAAAGTATTCAGCACCTG+TGG | - | chr1_3:76482889-76482908 | Msa0141480:intron | 40.0% |
| !! | TTGTGCTGTTCATTTTCCAC+AGG | + | chr1_3:76482908-76482927 | Msa0141490:CDS | 40.0% |
| GCTGTGGGATGTTAGATAAA+AGG | + | chr1_3:76483223-76483242 | Msa0141490:intron | 40.0% | |
| AATCAAGGAGGATCAAACCA+GGG | + | chr1_3:76483264-76483283 | Msa0141490:intron | 40.0% | |
| AAATCAAGGAGGATCAAACC+AGG | + | chr1_3:76483265-76483284 | Msa0141490:intron | 40.0% | |
| !! | AAAATTTTCGAGAGCATGGC+AGG | + | chr1_3:76483302-76483321 | Msa0141490:intron | 40.0% |
| ! | TGCCATGCTCTCGAAAATTT+TGG | - | chr1_3:76483301-76483320 | Msa0141480:intron | 40.0% |
| !! | GTCCAAAATTTTCGAGAGCA+TGG | + | chr1_3:76483306-76483325 | Msa0141490:intron | 40.0% |
| !!! | GGTGGTGGTTTTGTTGAAAA+AGG | + | chr1_3:76483486-76483505 | Msa0141490:intron | 40.0% |
| CTAGATGTAATGGCACATGT+GGG | + | chr1_3:76483574-76483593 | Msa0141490:intron | 40.0% | |
| GCAAGAGTTGCTAGATGTAA+TGG | + | chr1_3:76483584-76483603 | Msa0141490:intron | 40.0% | |
| TTACATCTAGCAACTCTTGC+GGG | - | chr1_3:76483584-76483603 | Msa0141480:intron | 40.0% | |
| GTCAACGACAACTTGTATAG+CGG | + | chr1_3:76483627-76483646 | Msa0141490:intron | 40.0% | |
| ATACAAGTTGTCGTTGACGA+AGG | - | chr1_3:76483629-76483648 | Msa0141480:intron | 40.0% | |
| AGCAGAGAACTAAGACCAAA+AGG | + | chr1_3:76483715-76483734 | Msa0141490:CDS | 40.0% | |
| CAAAACCCCAAAACACAAGA+TGG | + | chr1_3:76483763-76483782 | Msa0141490:CDS | 40.0% | |
| CTAAACGAAAAGGATCATGG+CGG | + | chr1_3:76483913-76483932 | None:intergenic | 40.0% | |
| GGCTGAAACTCTAAACGAAA+AGG | + | chr1_3:76483923-76483942 | None:intergenic | 40.0% | |
| AATATAGGCACTCACTTTGG+AGG | + | chr1_3:76483944-76483963 | None:intergenic | 40.0% | |
| ATTTGCGACACTTCCAGTTA+AGG | - | chr1_3:76483981-76484000 | Msa0141480:intron | 40.0% | |
| ! | TATTGGACCAGTTCTAACTC+CGG | + | chr1_3:76484083-76484102 | None:intergenic | 40.0% |
| ATACCAAACCGCAACGATAT+TGG | + | chr1_3:76484100-76484119 | None:intergenic | 40.0% | |
| GTGGTGGCACATTTCTATTA+AGG | - | chr1_3:76484123-76484142 | Msa0141480:CDS | 40.0% | |
| AGCGTGTTTGCTTTCATTAG+TGG | - | chr1_3:76484311-76484330 | Msa0141480:intron | 40.0% | |
| AGAATCAAGCACCACAATTG+GGG | + | chr1_3:76484402-76484421 | None:intergenic | 40.0% | |
| CATAACAATCGAACGACTTG+AGG | + | chr1_3:76484491-76484510 | None:intergenic | 40.0% | |
| GGAATAGAGACTCCAAGATG+AGG | - | chr1_3:76481494-76481513 | Msa0141480:CDS | 45.0% | |
| CTCCAAGATGAGGTGATTAG+AGG | - | chr1_3:76481504-76481523 | Msa0141480:intron | 45.0% | |
| ACCCTCTAATCACCTCATCT+TGG | + | chr1_3:76481509-76481528 | None:intergenic | 45.0% | |
| ACCGTGAAATATGACCCAGA+AGG | - | chr1_3:76481632-76481651 | Msa0141480:intron | 45.0% | |
| TTGCCAATGAAGGGACACAT+AGG | - | chr1_3:76481939-76481958 | Msa0141480:intron | 45.0% | |
| AGTCCTATGTGTCCCTTCAT+TGG | + | chr1_3:76481945-76481964 | None:intergenic | 45.0% | |
| TGGCGGAAAAGAATAGGATC+AGG | + | chr1_3:76481969-76481988 | None:intergenic | 45.0% | |
| TCACCAATGACACCTGTTCA+TGG | - | chr1_3:76482114-76482133 | Msa0141480:intron | 45.0% | |
| ! | AGTCCATGAACAGGTGTCAT+TGG | + | chr1_3:76482120-76482139 | None:intergenic | 45.0% |
| TGCTGCATAGCTGCTAGAAT+TGG | - | chr1_3:76482536-76482555 | Msa0141480:intron | 45.0% | |
| CATAGCTGCTAGAATTGGCT+TGG | - | chr1_3:76482541-76482560 | Msa0141480:intron | 45.0% | |
| TACAGGCAGTAGATCGTAGA+GGG | + | chr1_3:76482732-76482751 | None:intergenic | 45.0% | |
| ATACAGGCAGTAGATCGTAG+AGG | + | chr1_3:76482733-76482752 | None:intergenic | 45.0% | |
| ! | GGAAAAACATGTGGTGGAAG+TGG | + | chr1_3:76482785-76482804 | None:intergenic | 45.0% |
| !!! | GAATCTGCGTTTTGGAGAGT+TGG | + | chr1_3:76482806-76482825 | None:intergenic | 45.0% |
| GAATCACAATGCTACTGTGC+AGG | + | chr1_3:76482835-76482854 | None:intergenic | 45.0% | |
| ATGAAGCTCTTGGATGTGTC+TGG | + | chr1_3:76482867-76482886 | Msa0141490:CDS | 45.0% | |
| AACATCCCACAGCTTCAACA+TGG | - | chr1_3:76483230-76483249 | Msa0141480:intron | 45.0% | |
| GGATACCATGTTGAAGCTGT+GGG | + | chr1_3:76483238-76483257 | Msa0141490:intron | 45.0% | |
| TGGATACCATGTTGAAGCTG+TGG | + | chr1_3:76483239-76483258 | Msa0141490:intron | 45.0% | |
| TTTCCAACGACAGCATTCAG+TGG | + | chr1_3:76483450-76483469 | Msa0141490:intron | 45.0% | |
| GCTAGATGTAATGGCACATG+TGG | + | chr1_3:76483575-76483594 | Msa0141490:intron | 45.0% | |
| ACAACTTGTATAGCGGCACA+TGG | + | chr1_3:76483620-76483639 | Msa0141490:intron | 45.0% | |
| !! | TGGCTTGCCATCTTGTGTTT+TGG | - | chr1_3:76483753-76483772 | Msa0141480:intron | 45.0% |
| ! | GGCTTGCCATCTTGTGTTTT+GGG | - | chr1_3:76483754-76483773 | Msa0141480:CDS | 45.0% |
| ! | GCTTGCCATCTTGTGTTTTG+GGG | - | chr1_3:76483755-76483774 | Msa0141480:CDS | 45.0% |
| TTAGTTTACAGAGTGGGCGT+TGG | - | chr1_3:76484006-76484025 | Msa0141480:intron | 45.0% | |
| TCAATTGCCGGAGTTAGAAC+TGG | - | chr1_3:76484073-76484092 | Msa0141480:intron | 45.0% | |
| GAACTGGTCCAATATCGTTG+CGG | - | chr1_3:76484089-76484108 | Msa0141480:intron | 45.0% | |
| CTGGTAGCTTCTGTCTTATG+TGG | - | chr1_3:76484282-76484301 | Msa0141480:intron | 45.0% | |
| GTAGCTTCTGTCTTATGTGG+TGG | - | chr1_3:76484285-76484304 | Msa0141480:intron | 45.0% | |
| !!! | TTCTTTTGGAGTGAGTGTCG+TGG | - | chr1_3:76484418-76484437 | Msa0141480:intron | 45.0% |
| TGACACTAGAAGAAGACCGA+AGG | - | chr1_3:76484441-76484460 | Msa0141480:intron | 45.0% | |
| ! | GGGTCTTCTAGACTTGGTCA+TGG | - | chr1_3:76481525-76481544 | Msa0141480:intron | 50.0% |
| ! | TCTAGACTTGGTCATGGCTG+CGG | - | chr1_3:76481531-76481550 | Msa0141480:intron | 50.0% |
| AGAGGACCTTCAGAGAACGA+CGG | - | chr1_3:76482332-76482351 | Msa0141480:intron | 50.0% | |
| TCAAGTCATGCGCCAAACGA+TGG | + | chr1_3:76482506-76482525 | None:intergenic | 50.0% | |
| TCAACATGGTATCCACACCC+TGG | - | chr1_3:76483244-76483263 | Msa0141480:intron | 50.0% | |
| !! | GATTCTGGTCTTGATGGTGG+TGG | + | chr1_3:76483501-76483520 | Msa0141490:intron | 50.0% |
| !! | GCAGATTCTGGTCTTGATGG+TGG | + | chr1_3:76483504-76483523 | Msa0141490:intron | 50.0% |
| !! | TCGGCAGATTCTGGTCTTGA+TGG | + | chr1_3:76483507-76483526 | Msa0141490:intron | 50.0% |
| GGTCCAATATCGTTGCGGTT+TGG | - | chr1_3:76484094-76484113 | Msa0141480:intron | 50.0% | |
| ! | CTAGACTTGGTCATGGCTGC+GGG | - | chr1_3:76481532-76481551 | Msa0141480:intron | 55.0% |
| ! | GGCTGCGGGTCAAGCATTTT+AGG | - | chr1_3:76481546-76481565 | Msa0141480:intron | 55.0% |
| TGCACACCGTCGTTCTCTGA+AGG | + | chr1_3:76482341-76482360 | None:intergenic | 55.0% | |
| AGGCAGTAGATCGTAGAGGG+AGG | + | chr1_3:76482729-76482748 | None:intergenic | 55.0% | |
| ! | GGGCAGGAGAATCTGCGTTT+TGG | + | chr1_3:76482814-76482833 | None:intergenic | 55.0% |
| ACAATGCTACTGTGCAGGGC+AGG | + | chr1_3:76482830-76482849 | None:intergenic | 55.0% | |
| AGGAGGATCAAACCAGGGTG+TGG | + | chr1_3:76483259-76483278 | Msa0141490:intron | 55.0% | |
| !! | CGTTGCGGTTTGGTATGACG+TGG | - | chr1_3:76484104-76484123 | Msa0141480:intron | 55.0% |
| !! | TGCGGTTTGGTATGACGTGG+TGG | - | chr1_3:76484107-76484126 | Msa0141480:intron | 55.0% |
| GGGCCACTGAATGCTGTCGT+TGG | - | chr1_3:76483444-76483463 | Msa0141480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 76481492 | 76485021 | 76481492 | ID=Msa0141480;Name=Msa0141480 |
| chr1_3 | mRNA | 76481492 | 76485021 | 76481492 | ID=Msa0141480-mRNA-1;Parent=Msa0141480;Name=Msa0141480-mRNA-1;_AED=0.71;_eAED=0.75;_QI=19|0|0|0.37|0.57|0.75|8|0|103 |
| chr1_3 | exon | 76484998 | 76485021 | 76484998 | ID=Msa0141480-mRNA-1:exon:26705;Parent=Msa0141480-mRNA-1 |
| chr1_3 | exon | 76484120 | 76484179 | 76484120 | ID=Msa0141480-mRNA-1:exon:26704;Parent=Msa0141480-mRNA-1 |
| chr1_3 | exon | 76483754 | 76483826 | 76483754 | ID=Msa0141480-mRNA-1:exon:26703;Parent=Msa0141480-mRNA-1 |
| chr1_3 | exon | 76482971 | 76483090 | 76482971 | ID=Msa0141480-mRNA-1:exon:26702;Parent=Msa0141480-mRNA-1 |
| chr1_3 | exon | 76482610 | 76482615 | 76482610 | ID=Msa0141480-mRNA-1:exon:26701;Parent=Msa0141480-mRNA-1 |
| chr1_3 | exon | 76482565 | 76482572 | 76482565 | ID=Msa0141480-mRNA-1:exon:26700;Parent=Msa0141480-mRNA-1 |
| chr1_3 | exon | 76481631 | 76481639 | 76481631 | ID=Msa0141480-mRNA-1:exon:26699;Parent=Msa0141480-mRNA-1 |
| chr1_3 | exon | 76481492 | 76481519 | 76481492 | ID=Msa0141480-mRNA-1:exon:26698;Parent=Msa0141480-mRNA-1 |
| chr1_3 | five_prime_UTR | 76485003 | 76485021 | 76485003 | ID=Msa0141480-mRNA-1:five_prime_utr;Parent=Msa0141480-mRNA-1 |
| chr1_3 | CDS | 76484998 | 76485002 | 76484998 | ID=Msa0141480-mRNA-1:cds;Parent=Msa0141480-mRNA-1 |
| chr1_3 | CDS | 76484120 | 76484179 | 76484120 | ID=Msa0141480-mRNA-1:cds;Parent=Msa0141480-mRNA-1 |
| chr1_3 | CDS | 76483754 | 76483826 | 76483754 | ID=Msa0141480-mRNA-1:cds;Parent=Msa0141480-mRNA-1 |
| chr1_3 | CDS | 76482971 | 76483090 | 76482971 | ID=Msa0141480-mRNA-1:cds;Parent=Msa0141480-mRNA-1 |
| chr1_3 | CDS | 76482610 | 76482615 | 76482610 | ID=Msa0141480-mRNA-1:cds;Parent=Msa0141480-mRNA-1 |
| chr1_3 | CDS | 76482565 | 76482572 | 76482565 | ID=Msa0141480-mRNA-1:cds;Parent=Msa0141480-mRNA-1 |
| chr1_3 | CDS | 76481631 | 76481639 | 76481631 | ID=Msa0141480-mRNA-1:cds;Parent=Msa0141480-mRNA-1 |
| chr1_3 | CDS | 76481492 | 76481519 | 76481492 | ID=Msa0141480-mRNA-1:cds;Parent=Msa0141480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
