AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0141560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141560 MtrunA17_Chr7g0255561 97.462 394 9 1 1 394 1 393 0.0 785
Msa0141560 MtrunA17_Chr7g0255581 97.462 394 9 1 1 394 1 393 0.0 785
Msa0141560 MtrunA17_Chr8g0354121 63.710 372 125 5 11 373 9 379 7.44e-171 483
Msa0141560 MtrunA17_Chr3g0081511 63.333 360 124 4 2 357 4 359 2.94e-163 463
Msa0141560 MtrunA17_Chr3g0081421 57.552 384 157 3 1 378 3 386 7.29e-161 457
Msa0141560 MtrunA17_Chr1g0160171 49.077 379 186 3 4 379 3 377 8.96e-128 373
Msa0141560 MtrunA17_Chr7g0263101 52.853 333 152 2 6 337 4 332 3.77e-125 366
Msa0141560 MtrunA17_Chr3g0114691 46.891 386 196 5 2 382 7 388 7.82e-124 363
Msa0141560 MtrunA17_Chr1g0182291 49.577 355 168 4 7 356 7 355 1.08e-121 357
Msa0141560 MtrunA17_Chr3g0114731 47.904 334 168 1 11 344 14 341 1.25e-112 335
Msa0141560 MtrunA17_Chr1g0160181 47.041 338 176 2 8 344 11 346 2.71e-110 328
Msa0141560 MtrunA17_Chr3g0114711 41.598 363 170 4 12 337 11 368 1.21e-104 314
Msa0141560 MtrunA17_Chr3g0114701 45.783 332 177 2 9 339 3 332 7.08e-100 301
Msa0141560 MtrunA17_Chr1g0171301 42.330 352 196 4 6 356 7 352 1.43e-93 285
Msa0141560 MtrunA17_Chr1g0186601 42.730 337 183 5 11 345 12 340 1.69e-93 284
Msa0141560 MtrunA17_Chr1g0186611 42.560 336 185 3 11 345 12 340 2.50e-90 276
Msa0141560 MtrunA17_Chr1g0186571 42.388 335 185 3 12 345 10 337 3.55e-89 273
Msa0141560 MtrunA17_Chr1g0186641 42.683 328 181 3 12 338 10 331 5.65e-89 272
Msa0141560 MtrunA17_Chr1g0186561 43.155 336 184 3 11 345 12 341 7.97e-89 272
Msa0141560 MtrunA17_Chr7g0271561 38.965 367 217 4 16 377 8 372 1.31e-86 268
Msa0141560 MtrunA17_Chr6g0463971 36.620 355 218 4 12 365 13 361 4.49e-85 263
Msa0141560 MtrunA17_Chr3g0142131 39.655 348 201 1 5 343 10 357 6.80e-82 256
Msa0141560 MtrunA17_Chr2g0278561 38.551 345 205 3 1 343 3 342 2.79e-80 251
Msa0141560 MtrunA17_Chr4g0059311 37.462 331 202 2 10 339 6 332 1.17e-79 249
Msa0141560 MtrunA17_Chr2g0278541 38.507 335 198 3 15 343 12 344 1.61e-79 249
Msa0141560 MtrunA17_Chr2g0290611 38.824 340 200 3 12 348 9 343 2.23e-79 248
Msa0141560 MtrunA17_Chr1g0184221 34.957 349 205 2 11 345 12 352 2.61e-79 248
Msa0141560 MtrunA17_Chr1g0155761 38.617 347 199 2 12 344 18 364 1.00e-78 248
Msa0141560 MtrunA17_Chr2g0278551 38.053 339 204 2 15 351 12 346 3.02e-75 239
Msa0141560 MtrunA17_Chr4g0050881 38.253 332 200 4 15 344 9 337 3.27e-75 237
Msa0141560 MtrunA17_Chr3g0129571 34.000 350 216 2 16 350 8 357 1.91e-74 236
Msa0141560 MtrunA17_Chr6g0483401 37.202 336 211 0 24 359 19 354 5.45e-74 234
Msa0141560 MtrunA17_Chr3g0129601 33.431 341 214 2 15 349 29 362 2.56e-72 230
Msa0141560 MtrunA17_Chr2g0284261 36.474 329 203 3 12 340 5 327 5.00e-72 229
Msa0141560 MtrunA17_Chr8g0334761 35.422 367 224 3 16 377 11 369 2.63e-71 228
Msa0141560 MtrunA17_Chr4g0051021 36.232 345 212 4 12 352 11 351 4.00e-71 228
Msa0141560 MtrunA17_Chr4g0050891 37.500 328 194 3 11 332 9 331 1.12e-70 226
Msa0141560 MtrunA17_Chr1g0160111 33.973 365 215 4 24 377 16 365 7.43e-70 224
Msa0141560 MtrunA17_Chr2g0332001 35.905 337 210 3 10 345 33 364 3.03e-69 223
Msa0141560 MtrunA17_Chr4g0050941 37.831 378 215 7 11 374 8 379 3.37e-69 223
Msa0141560 MtrunA17_Chr1g0177221 42.857 252 138 2 15 265 18 264 1.19e-68 218
Msa0141560 MtrunA17_Chr1g0164831 35.000 340 210 4 15 351 3 334 4.19e-68 218
Msa0141560 MtrunA17_Chr3g0129591 34.393 346 219 3 16 356 6 348 1.09e-66 216
Msa0141560 MtrunA17_Chr8g0334751 36.812 345 205 4 16 355 12 348 1.51e-63 207
Msa0141560 MtrunA17_Chr8g0383731 33.535 331 214 2 12 338 2 330 6.63e-63 205
Msa0141560 MtrunA17_Chr5g0413941 35.671 328 205 3 19 345 11 333 5.35e-62 203
Msa0141560 MtrunA17_Chr3g0129581 35.549 346 215 3 16 356 6 348 7.98e-62 203
Msa0141560 MtrunA17_Chr8g0334771 35.119 336 203 3 16 345 11 337 9.17e-62 203
Msa0141560 MtrunA17_Chr3g0126101 34.012 344 214 5 16 356 7 340 1.77e-61 201
Msa0141560 MtrunA17_Chr2g0310441 33.837 331 212 3 16 344 11 336 3.66e-60 199
Msa0141560 MtrunA17_Chr5g0413961 31.402 328 217 2 12 339 11 330 5.42e-60 198
Msa0141560 MtrunA17_Chr1g0150151 31.503 346 228 4 1 344 1 339 1.32e-59 197
Msa0141560 MtrunA17_Chr5g0413921 35.366 328 202 5 20 344 12 332 2.98e-59 196
Msa0141560 MtrunA17_Chr5g0413951 35.294 323 197 5 20 338 12 326 4.95e-58 192
Msa0141560 MtrunA17_Chr7g0227921 34.320 338 207 6 11 344 7 333 5.11e-57 191
Msa0141560 MtrunA17_Chr4g0073241 30.792 341 222 4 16 351 9 340 6.59e-56 187
Msa0141560 MtrunA17_Chr5g0407971 35.015 337 205 4 15 339 11 345 6.70e-56 188
Msa0141560 MtrunA17_Chr5g0413931 34.146 328 206 5 20 344 11 331 1.50e-54 184
Msa0141560 MtrunA17_Chr4g0050931 32.754 345 184 4 11 349 8 310 3.18e-54 182
Msa0141560 MtrunA17_Chr6g0451171 31.694 366 237 7 9 372 6 360 4.06e-53 180
Msa0141560 MtrunA17_Chr5g0408001 34.808 339 207 4 15 341 10 346 4.64e-53 181
Msa0141560 MtrunA17_Chr4g0051001 33.443 305 200 2 12 315 28 330 4.39e-52 177
Msa0141560 MtrunA17_Chr5g0407991 34.211 342 213 2 15 345 9 349 5.27e-52 178
Msa0141560 MtrunA17_Chr6g0451251 33.989 356 223 5 9 362 6 351 2.06e-51 176
Msa0141560 MtrunA17_Chr6g0451201 32.402 358 230 6 5 362 2 347 3.16e-51 175
Msa0141560 MtrunA17_Chr5g0428881 28.783 337 239 1 10 346 13 348 9.12e-51 174
Msa0141560 MtrunA17_Chr5g0408031 33.626 342 211 4 12 339 7 346 1.36e-50 174
Msa0141560 MtrunA17_Chr5g0408041 34.694 343 208 4 15 343 11 351 8.14e-50 172
Msa0141560 MtrunA17_Chr6g0451211 32.647 340 215 6 9 344 6 335 2.57e-48 167
Msa0141560 MtrunA17_Chr3g0126091 30.088 339 220 5 16 345 12 342 1.43e-47 166
Msa0141560 MtrunA17_Chr5g0441761 28.228 333 229 2 19 351 18 340 1.88e-47 165
Msa0141560 MtrunA17_Chr8g0369841 30.357 336 222 2 15 339 9 343 4.23e-46 162
Msa0141560 MtrunA17_Chr1g0211801 32.432 259 170 3 7 265 3 256 1.84e-42 149
Msa0141560 MtrunA17_Chr6g0451261 29.841 315 212 5 5 318 4 310 9.11e-41 154
Msa0141560 MtrunA17_Chr5g0429001 30.000 280 191 2 68 346 8 283 1.71e-39 143
Msa0141560 MtrunA17_Chr5g0404811 34.842 221 142 1 123 343 1 219 9.78e-39 139
Msa0141560 MtrunA17_Chr3g0084091 30.864 243 165 1 95 337 10 249 1.98e-38 140
Msa0141560 MtrunA17_Chr2g0278021 35.484 217 133 3 129 340 1 215 2.92e-33 125
Msa0141560 MtrunA17_Chr6g0451191 31.984 247 156 5 129 373 1 237 7.13e-33 123
Msa0141560 MtrunA17_Chr4g0056081 28.783 337 207 10 19 338 18 338 1.21e-32 125
Msa0141560 MtrunA17_Chr1g0182261 45.714 140 73 3 208 344 78 217 3.39e-32 121
Msa0141560 MtrunA17_Chr1g0182261 40.000 75 45 0 11 85 10 84 2.68e-13 68.9
Msa0141560 MtrunA17_Chr8g0334711 35.644 202 116 4 16 212 11 203 2.12e-31 118
Msa0141560 MtrunA17_Chr5g0399281 27.640 322 227 5 19 338 12 329 3.38e-30 119
Msa0141560 MtrunA17_Chr1g0172881 41.096 146 71 4 123 265 16 149 8.57e-28 107
Msa0141560 MtrunA17_Chr5g0404801 44.444 117 65 0 12 128 4 120 2.05e-25 100
Msa0141560 MtrunA17_Chr8g0372571 93.478 46 3 0 244 289 1 46 1.62e-24 95.9
Msa0141560 MtrunA17_Chr2g0278031 42.342 111 64 0 15 125 14 124 2.63e-24 97.1
Msa0141560 MtrunA17_Chr4g0021721 91.304 46 4 0 244 289 1 46 7.32e-24 93.6
Msa0141560 MtrunA17_Chr8g0334721 40.164 122 73 0 229 350 1 122 9.22e-24 96.7
Msa0141560 MtrunA17_Chr1g0177231 51.899 79 38 0 266 344 29 107 4.31e-22 90.9
Msa0141560 MtrunA17_Chr1g0172891 51.250 80 38 1 272 351 13 91 4.38e-20 85.1
Msa0141560 MtrunA17_Chr8g0334731 29.717 212 122 7 16 224 12 199 6.95e-18 81.3
Msa0141560 MtrunA17_Chr4g0050911 40.449 89 52 1 95 182 11 99 5.00e-16 75.1
Msa0141560 MtrunA17_Chr4g0050921 32.353 102 69 0 217 318 3 104 6.16e-16 73.9
Msa0141560 MtrunA17_Chr1g0211811 35.227 88 55 1 267 352 1 88 8.92e-16 72.4
Msa0141560 MtrunA17_Chr6g0451241 52.459 61 27 1 284 344 26 84 1.43e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141560 AT5G07050.1 62.217 397 135 6 1 392 3 389 7.39e-173 488
Msa0141560 AT2G40900.1 53.619 373 160 4 12 382 7 368 5.42e-152 435
Msa0141560 AT3G56620.1 53.743 374 163 3 12 383 7 372 2.48e-143 412
Msa0141560 AT1G21890.1 50.440 341 164 1 15 350 10 350 1.54e-127 373
Msa0141560 AT4G08300.1 49.462 372 173 4 12 373 7 373 2.62e-124 364
Msa0141560 AT2G37460.1 51.176 340 154 3 12 345 11 344 3.92e-123 361
Msa0141560 AT1G44800.1 47.977 346 175 3 12 356 7 348 1.13e-120 355
Msa0141560 AT2G39510.1 47.632 359 182 3 15 372 7 360 5.20e-120 353
Msa0141560 AT1G21890.2 51.961 306 142 1 15 315 10 315 5.03e-114 337
Msa0141560 AT4G08290.1 46.291 337 176 2 1 337 1 332 4.00e-112 333
Msa0141560 AT5G13670.1 45.015 331 175 4 11 338 3 329 1.51e-102 308
Msa0141560 AT2G37450.2 43.235 340 165 3 12 350 5 317 7.47e-90 275
Msa0141560 AT1G09380.1 40.125 319 191 0 16 334 8 326 1.56e-85 265
Msa0141560 AT1G75500.1 37.119 361 218 4 12 365 16 374 1.04e-78 248
Msa0141560 AT1G75500.2 37.119 361 218 4 12 365 16 374 1.04e-78 248
Msa0141560 AT4G08290.2 42.424 264 147 2 1 264 1 259 2.59e-77 241
Msa0141560 AT3G18200.2 39.286 336 194 4 12 345 31 358 4.95e-77 243
Msa0141560 AT3G53210.1 37.500 336 201 2 12 344 6 335 2.15e-73 233
Msa0141560 AT5G64700.1 35.119 336 213 3 15 346 7 341 1.23e-72 231
Msa0141560 AT3G30340.1 35.692 325 206 1 15 339 10 331 5.77e-70 224
Msa0141560 AT1G43650.1 36.023 347 212 4 15 360 6 343 2.01e-68 220
Msa0141560 AT4G30420.2 35.294 357 209 6 12 356 5 351 3.38e-67 218
Msa0141560 AT1G25270.1 36.503 326 205 1 15 340 2 325 3.67e-66 214
Msa0141560 AT4G30420.1 35.652 345 212 4 18 356 1 341 1.93e-65 213
Msa0141560 AT2G37450.3 45.378 238 123 2 101 337 1 232 6.00e-65 208
Msa0141560 AT1G01070.1 33.994 353 225 4 1 351 1 347 4.93e-61 201
Msa0141560 AT1G68170.2 33.934 333 215 2 11 341 8 337 9.89e-57 190
Msa0141560 AT1G68170.1 33.521 355 226 3 15 362 2 353 1.96e-56 189
Msa0141560 AT4G01440.1 31.343 335 218 2 16 346 10 336 6.86e-56 188
Msa0141560 AT1G11450.3 32.551 341 223 4 12 351 12 346 3.11e-55 186
Msa0141560 AT5G40210.1 34.043 329 181 6 19 339 16 316 3.28e-55 185
Msa0141560 AT5G40240.1 31.751 337 226 4 4 338 7 341 3.83e-55 186
Msa0141560 AT5G40240.3 31.751 337 226 4 4 338 7 341 3.83e-55 186
Msa0141560 AT5G40240.2 32.059 340 226 5 2 338 18 355 5.73e-55 186
Msa0141560 AT4G28040.1 32.036 334 204 7 12 340 4 319 5.87e-55 185
Msa0141560 AT4G28040.5 32.036 334 204 7 12 340 4 319 5.87e-55 185
Msa0141560 AT4G28040.3 32.036 334 204 7 12 340 4 319 5.87e-55 185
Msa0141560 AT4G28040.4 32.036 334 204 7 12 340 4 319 5.87e-55 185
Msa0141560 AT4G28040.2 32.036 334 204 7 12 340 4 319 5.87e-55 185
Msa0141560 AT1G11460.1 33.131 329 211 3 12 337 12 334 2.86e-54 183
Msa0141560 AT5G40230.1 31.778 343 222 6 3 339 7 343 4.96e-53 181
Msa0141560 AT2G37450.1 42.411 224 122 2 128 350 61 278 1.53e-52 177
Msa0141560 AT2G37450.1 54.386 57 26 0 12 68 5 61 3.27e-13 70.1
Msa0141560 AT4G01430.1 30.588 340 230 4 12 348 5 341 2.18e-51 176
Msa0141560 AT3G53210.2 36.328 256 154 2 92 344 29 278 9.22e-51 173
Msa0141560 AT5G45370.1 33.645 321 199 2 19 339 23 329 5.08e-50 172
Msa0141560 AT3G28050.1 31.579 342 216 9 10 345 5 334 5.42e-50 172
Msa0141560 AT3G45870.1 34.154 325 206 3 15 332 11 334 2.09e-49 171
Msa0141560 AT4G01440.3 30.921 304 198 2 16 315 10 305 3.80e-49 169
Msa0141560 AT1G11450.5 33.663 303 194 4 50 351 6 302 4.00e-49 169
Msa0141560 AT5G45370.2 32.530 332 212 2 19 339 23 353 5.22e-49 170
Msa0141560 AT5G45370.4 32.530 332 212 2 19 339 23 353 5.22e-49 170
Msa0141560 AT1G70260.1 29.290 338 227 3 16 345 12 345 1.37e-48 169
Msa0141560 AT1G01070.2 34.589 292 183 4 62 351 15 300 1.39e-48 167
Msa0141560 AT3G53210.3 35.918 245 148 2 12 253 6 244 6.84e-48 164
Msa0141560 AT1G11450.2 33.333 300 193 4 53 351 2 295 1.38e-47 164
Msa0141560 AT3G18200.1 38.559 236 135 4 112 345 1 228 2.14e-47 162
Msa0141560 AT4G19185.1 32.934 334 212 2 17 339 22 354 7.59e-47 165
Msa0141560 AT3G28130.2 32.047 337 211 7 19 345 16 344 9.84e-47 164
Msa0141560 AT3G28100.1 31.378 341 219 7 7 340 4 336 1.23e-46 163
Msa0141560 AT5G64700.2 33.071 254 165 3 15 264 7 259 5.10e-46 159
Msa0141560 AT4G15540.1 31.085 341 218 4 1 339 1 326 5.27e-46 161
Msa0141560 AT4G15540.2 31.085 341 218 4 1 339 1 326 5.27e-46 161
Msa0141560 AT3G30340.2 33.865 251 163 1 15 265 10 257 7.90e-46 159
Msa0141560 AT1G11450.4 31.148 305 204 3 12 315 12 311 9.80e-45 157
Msa0141560 AT3G28070.2 35.102 245 153 4 98 340 7 247 1.45e-44 155
Msa0141560 AT3G28070.1 35.102 245 153 4 98 340 99 339 1.64e-43 155
Msa0141560 AT3G45870.8 33.442 308 197 3 15 315 11 317 4.02e-43 153
Msa0141560 AT3G28130.5 34.783 253 157 4 98 345 9 258 4.04e-43 152
Msa0141560 AT3G28130.1 34.783 253 157 4 98 345 9 258 4.04e-43 152
Msa0141560 AT4G01430.2 30.945 307 206 4 12 315 5 308 2.86e-42 150
Msa0141560 AT5G47470.1 31.014 345 222 7 4 343 18 351 3.22e-42 152
Msa0141560 AT5G47470.3 31.014 345 222 7 4 343 46 379 4.26e-42 152
Msa0141560 AT5G47470.2 31.014 345 222 7 4 343 46 379 4.52e-42 152
Msa0141560 AT4G24980.1 29.450 309 148 5 30 338 1 239 4.80e-41 146
Msa0141560 AT3G28080.5 36.475 244 147 6 100 340 9 247 9.55e-41 145
Msa0141560 AT3G28080.7 36.475 244 147 6 100 340 9 247 9.55e-41 145
Msa0141560 AT3G28080.8 36.475 244 147 6 100 340 9 247 9.55e-41 145
Msa0141560 AT3G28080.6 36.475 244 147 6 100 340 9 247 9.55e-41 145
Msa0141560 AT3G28080.1 32.622 328 207 9 19 340 17 336 1.45e-40 147
Msa0141560 AT3G28080.2 36.475 244 147 6 100 340 90 328 8.49e-40 145
Msa0141560 AT1G43650.2 33.466 251 158 3 15 264 6 248 1.04e-39 142
Msa0141560 AT4G01440.4 31.890 254 161 2 16 265 10 255 1.36e-39 142
Msa0141560 AT4G01450.2 32.500 320 199 3 28 342 21 328 1.50e-38 142
Msa0141560 AT4G01450.1 31.058 293 185 3 28 315 21 301 1.14e-36 136
Msa0141560 AT1G11450.1 32.046 259 169 4 94 351 2 254 7.16e-36 132
Msa0141560 AT3G45870.9 34.553 246 154 2 15 253 11 256 7.50e-36 132
Msa0141560 AT4G19185.2 31.783 258 164 2 93 339 20 276 9.72e-36 133
Msa0141560 AT1G60050.1 28.080 349 223 6 16 348 13 349 4.65e-35 133
Msa0141560 AT4G01440.5 30.435 230 156 1 117 346 3 228 2.74e-34 128
Msa0141560 AT4G01440.2 30.435 230 156 1 117 346 3 228 2.74e-34 128
Msa0141560 AT4G01450.4 33.624 229 135 3 28 251 21 237 3.21e-33 125
Msa0141560 AT4G16620.1 31.250 304 196 7 46 343 41 337 4.65e-33 127
Msa0141560 AT3G28070.3 33.182 220 141 4 98 315 99 314 1.25e-32 125
Msa0141560 AT4G01450.3 34.434 212 122 3 28 234 21 220 4.42e-31 119
Msa0141560 AT5G45370.6 31.076 251 161 2 100 339 2 251 1.75e-30 118
Msa0141560 AT5G45370.5 31.076 251 161 2 100 339 2 251 1.75e-30 118
Msa0141560 AT3G28070.5 32.243 214 139 4 129 340 1 210 9.90e-30 115
Msa0141560 AT3G28130.3 32.432 222 142 4 129 345 1 219 1.67e-29 114
Msa0141560 AT3G28080.3 28.528 326 169 8 19 340 17 282 1.55e-27 111
Msa0141560 AT3G28080.4 30.992 242 109 5 100 340 9 193 2.00e-27 108
Msa0141560 AT3G28080.9 33.953 215 134 6 129 340 1 210 5.37e-27 107
Msa0141560 AT3G28100.3 30.645 248 159 5 19 260 17 257 1.25e-26 107
Msa0141560 AT3G45870.5 33.019 212 134 3 128 332 49 259 7.36e-26 106
Msa0141560 AT3G28130.4 29.435 248 162 5 19 260 16 256 5.46e-24 100
Msa0141560 AT4G16620.4 30.769 247 160 5 101 343 1 240 5.69e-24 100
Msa0141560 AT4G16620.2 30.769 247 160 5 101 343 1 240 5.69e-24 100
Msa0141560 AT3G28100.2 32.663 199 122 4 19 212 17 208 3.57e-21 92.4
Msa0141560 AT5G45370.3 28.395 243 160 3 110 339 52 293 5.37e-21 93.2
Msa0141560 AT3G28130.6 31.658 199 124 4 19 212 16 207 3.62e-20 88.6
Msa0141560 AT3G45870.6 31.795 195 125 3 128 315 49 242 5.61e-20 89.0
Msa0141560 AT3G45870.7 31.795 195 125 3 128 315 49 242 5.61e-20 89.0
Msa0141560 AT4G16620.3 29.703 202 134 4 46 245 41 236 6.20e-20 89.4
Msa0141560 AT4G01430.3 27.536 207 145 3 144 348 1 204 6.94e-20 88.2
Msa0141560 AT3G45870.2 33.333 147 97 1 186 332 38 183 2.88e-16 78.2
Msa0141560 AT3G45870.4 32.824 131 81 2 130 253 4 134 7.36e-13 66.6
Msa0141560 AT3G45870.3 30.769 156 98 3 105 253 29 181 1.17e-12 67.0
Msa0141560 AT3G28060.1 27.922 154 88 5 169 315 17 154 1.08e-11 63.2

Find 98 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGAAAAGGATTGGGTTAA+AGG 0.182504 1_3:-76728743 Msa0141560:CDS
TATCTACATATTTAAACTTT+TGG 0.203502 1_3:+76727298 None:intergenic
GGCTTCTTTCTTCATTCTTC+AGG 0.214826 1_3:-76728687 Msa0141560:intron
TTAAATATGTAGATATTATT+AGG 0.226319 1_3:-76727290 Msa0141560:exon
AATTTAATTAAGTTACATTA+TGG 0.226743 1_3:+76727085 None:intergenic
ATAAATTAGGATGGAGAAAT+TGG 0.234772 1_3:-76728927 Msa0141560:intron
GATGATCATTGTAGCAATTA+TGG 0.238191 1_3:-76727999 Msa0141560:CDS
GCAATGATTTGTCTACAATT+TGG 0.240667 1_3:-76729743 Msa0141560:CDS
TTATCATCACTACCTTTCTT+TGG 0.252134 1_3:-76727168 Msa0141560:three_prime_UTR
ATTTGTGATTGCAGTGTTAT+TGG 0.259447 1_3:-76727538 Msa0141560:intron
ATCACGTAGAGTTGAGAAAT+TGG 0.280355 1_3:-76727227 Msa0141560:three_prime_UTR
TCTCTCTATCAGTAGTATTA+TGG 0.314109 1_3:+76729832 None:intergenic
TCATTATTGCCACCTTTGCT+TGG 0.320554 1_3:-76728709 Msa0141560:CDS
CCTGAAAACACTACTGATTC+TGG 0.323745 1_3:-76728764 Msa0141560:CDS
TAGGACTTTACTCAGTTCTA+TGG 0.324315 1_3:-76727498 Msa0141560:CDS
ATAACCGGGCCCACACTTAA+TGG 0.328176 1_3:+76727108 None:intergenic
GGAACTGTAATTACAGTTGC+TGG 0.333568 1_3:-76728869 Msa0141560:CDS
TAAGTTACATTATGGATAAC+CGG 0.335801 1_3:+76727093 None:intergenic
CATTATTGCCACCTTTGCTT+GGG 0.365039 1_3:-76728708 Msa0141560:CDS
CAACCAATGCTCCAAGCATT+TGG 0.368276 1_3:+76728463 None:intergenic
TGTAGAAAATGGAGTAATAT+TGG 0.373183 1_3:-76727413 Msa0141560:CDS
ATGAAGTGTTGTGTAGAAAA+TGG 0.377896 1_3:-76727424 Msa0141560:CDS
CTGATTCTGGTGAAAAGGAT+TGG 0.390193 1_3:-76728751 Msa0141560:CDS
CACTACTGATTCTGGTGAAA+AGG 0.391411 1_3:-76728756 Msa0141560:CDS
TAATAGCACATGAGTAGGTT+GGG 0.409987 1_3:+76729114 None:intergenic
TACCTTTCTTTGGAAAACTT+TGG 0.411135 1_3:-76727158 Msa0141560:three_prime_UTR
ATGATCATTGTAGCAATTAT+GGG 0.413953 1_3:-76727998 Msa0141560:CDS
AGACAAATCATTGCTATGTA+AGG 0.421535 1_3:+76729752 None:intergenic
CAGTTCCAATCACCTTTACT+TGG 0.422944 1_3:+76728885 None:intergenic
AAATGATATTGAAATGCAAA+AGG 0.427377 1_3:-76727362 Msa0141560:CDS
CACAGCTATAGTGTGTTCCT+TGG 0.437061 1_3:-76728530 Msa0141560:CDS
AAGCCAAATGCTTGGAGCAT+TGG 0.441831 1_3:-76728466 Msa0141560:CDS
TGATTCTGGTGAAAAGGATT+GGG 0.443945 1_3:-76728750 Msa0141560:CDS
AGATGCCAAGTAAAGGTGAT+TGG 0.445654 1_3:-76728890 Msa0141560:CDS
ATGTTCGTGTTGGGACTCCT+CGG 0.448412 1_3:-76729439 Msa0141560:CDS
GCCATGACAAATGTCATTGC+TGG 0.449617 1_3:+76729080 None:intergenic
AACATAAGAAATGTGATCCT+TGG 0.453298 1_3:+76729469 None:intergenic
AGGACTTTACTCAGTTCTAT+GGG 0.455974 1_3:-76727497 Msa0141560:CDS
GATCAGAACCTATACTATGC+TGG 0.460553 1_3:-76729152 Msa0141560:CDS
TTGTCATTGGCAGGAAGATA+AGG 0.461420 1_3:-76729492 Msa0141560:intron
GGTCTTACCTACTATGTTCA+AGG 0.466312 1_3:-76728076 Msa0141560:CDS
CAAATGCTTGGAGCATTGGT+TGG 0.475581 1_3:-76728462 Msa0141560:CDS
CTCTCAAGAACAATAGCAAA+TGG 0.479507 1_3:+76729617 None:intergenic
AAATGCTTGGAGCATTGGTT+GGG 0.486794 1_3:-76728461 Msa0141560:CDS
TTGAAAAGGAAATTATATTG+AGG 0.487701 1_3:-76727050 Msa0141560:three_prime_UTR
ATTTCAACCCAGCATAGTAT+AGG 0.492882 1_3:+76729144 None:intergenic
GGGATAGTCATGCAAAAGAA+AGG 0.494971 1_3:-76728055 Msa0141560:CDS
CTAATAGCACATGAGTAGGT+TGG 0.498278 1_3:+76729113 None:intergenic
TGTTCGTGTTGGGACTCCTC+GGG 0.499429 1_3:-76729438 Msa0141560:intron
CATTTGCTATTGTTCTTGAG+AGG 0.504801 1_3:-76729616 Msa0141560:intron
GAACTGTAATTACAGTTGCT+GGG 0.505303 1_3:-76728868 Msa0141560:CDS
TCACGTAGAGTTGAGAAATT+GGG 0.508042 1_3:-76727226 Msa0141560:three_prime_UTR
ACAGCTATAGTGTGTTCCTT+GGG 0.509092 1_3:-76728529 Msa0141560:CDS
TTTATGCAAATGTTCGTGTT+GGG 0.509361 1_3:-76729448 Msa0141560:CDS
GAGCAGGGTATAATATCATC+AGG 0.517268 1_3:-76728097 Msa0141560:intron
AAAATTAAGATGCCAAGTAA+AGG 0.520767 1_3:-76728897 Msa0141560:CDS
AGGACCATTAAGTGTGGGCC+CGG 0.523031 1_3:-76727112 Msa0141560:three_prime_UTR
GAAAGGTAGTGATGATAATG+AGG 0.529638 1_3:+76727173 None:intergenic
ATCAGAACCTATACTATGCT+GGG 0.534041 1_3:-76729151 Msa0141560:CDS
GTTTATGCAAATGTTCGTGT+TGG 0.539764 1_3:-76729449 Msa0141560:CDS
AATGATATTGAAATGCAAAA+GGG 0.540111 1_3:-76727361 Msa0141560:CDS
GACTATCCCTTGAACATAGT+AGG 0.543020 1_3:+76728069 None:intergenic
GGATAGTCATGCAAAAGAAA+GGG 0.545870 1_3:-76728054 Msa0141560:CDS
AAATTCAGGCTGTGACATTG+AGG 0.548667 1_3:-76728576 Msa0141560:intron
CCCAGCAATGACATTTGTCA+TGG 0.557417 1_3:-76729081 Msa0141560:CDS
TGATTAGGACCATTAAGTGT+GGG 0.561450 1_3:-76727117 Msa0141560:three_prime_UTR
GATGATAATGAGGATGAAGA+AGG 0.563760 1_3:+76727183 None:intergenic
TGGAGCATAAGCCAAATGCT+TGG 0.566635 1_3:-76728474 Msa0141560:CDS
AATTACAGTTGCTGGGGCCA+TGG 0.571553 1_3:-76728861 Msa0141560:CDS
ATATTGGAAACAGTGATTGA+AGG 0.577888 1_3:-76727397 Msa0141560:CDS
GAAAGAAGCCCAAGCAAAGG+TGG 0.577910 1_3:+76728700 None:intergenic
AAGCAAAGGTGGCAATAATG+AGG 0.583286 1_3:+76728711 None:intergenic
TAGAGTTGAGAAATTGGGAG+GGG 0.583687 1_3:-76727221 Msa0141560:three_prime_UTR
AATTGATTGAAGTGTGCCCA+AGG 0.589839 1_3:+76728513 None:intergenic
AATAGCACATGAGTAGGTTG+GGG 0.594825 1_3:+76729115 None:intergenic
TATAGGTTCTGATCAATCAC+AGG 0.594938 1_3:+76729161 None:intergenic
ATTGCTAATAGCACATGAGT+AGG 0.596686 1_3:+76729109 None:intergenic
AACTGTAATTACAGTTGCTG+GGG 0.596912 1_3:-76728867 Msa0141560:CDS
GATATTGAAATGCAAAAGGG+TGG 0.602633 1_3:-76727358 Msa0141560:CDS
GCTACAATGATCATCATCAA+AGG 0.605705 1_3:+76728007 None:intergenic
AAGTTACATTATGGATAACC+GGG 0.607834 1_3:+76727094 None:intergenic
CCATGACAAATGTCATTGCT+GGG 0.609642 1_3:+76729081 None:intergenic
TGGTATGAACATAATAACAA+AGG 0.615728 1_3:-76729714 Msa0141560:CDS
GTCTTACCTACTATGTTCAA+GGG 0.621110 1_3:-76728075 Msa0141560:CDS
TTGATTAGGACCATTAAGTG+TGG 0.624939 1_3:-76727118 Msa0141560:three_prime_UTR
CGTAGAGTTGAGAAATTGGG+AGG 0.627084 1_3:-76727223 Msa0141560:three_prime_UTR
GAAGAAAGAAGCCCAAGCAA+AGG 0.631452 1_3:+76728697 None:intergenic
TAATACTACTGATAGAGAGA+AGG 0.633010 1_3:-76729829 Msa0141560:five_prime_UTR
TGAAGAAGAGACAATAACTG+AGG 0.638287 1_3:-76727449 Msa0141560:CDS
GAAGAAGAGACAATAACTGA+GGG 0.639766 1_3:-76727448 Msa0141560:CDS
GAACATAGTGACTCATTCCA+CGG 0.650720 1_3:+76729681 None:intergenic
TTGGCAGGAAGATAAGGCCA+AGG 0.651054 1_3:-76729486 Msa0141560:intron
AGAAACAGAGTTGTATACAG+AGG 0.655104 1_3:+76729868 None:intergenic
GTAGAGTTGAGAAATTGGGA+GGG 0.658226 1_3:-76727222 Msa0141560:three_prime_UTR
TTTGTATAATGTCATCACCA+TGG 0.663821 1_3:+76728844 None:intergenic
GGACTTTACTCAGTTCTATG+GGG 0.681459 1_3:-76727496 Msa0141560:CDS
ACAAAGGTTTCACTCAACCG+TGG 0.684285 1_3:-76729698 Msa0141560:CDS
ATGGTGATGACATTATACAA+AGG 0.703249 1_3:-76728842 Msa0141560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGTTATTGTTTTTATT+AGG - chr1_3:76727757-76727776 Msa0141560:intron 10.0%
!! AAAACATAAAAAGAATATAA+AGG + chr1_3:76727962-76727981 None:intergenic 10.0%
!!! TTTATATTCTTTTTATGTTT+TGG - chr1_3:76727961-76727980 Msa0141560:intron 10.0%
!!! AATTTAAAACTTTGATAAAA+GGG + chr1_3:76728546-76728565 None:intergenic 10.0%
!!! GTTTTATTTTATTTTTGTAA+TGG - chr1_3:76729027-76729046 Msa0141560:intron 10.0%
!!! AAAATAATAAAGCATTTAAA+AGG - chr1_3:76729302-76729321 Msa0141560:intron 10.0%
!! TTAAATATGTAGATATTATT+AGG - chr1_3:76729651-76729670 Msa0141560:CDS 10.0%
!! AATTTAATTAAGTTACATTA+TGG + chr1_3:76729859-76729878 None:intergenic 10.0%
!!! AACAAATTTTAGAACATTTT+TGG + chr1_3:76727745-76727764 None:intergenic 15.0%
!! TAAAAAGAATATAAAGGAAA+AGG + chr1_3:76727956-76727975 None:intergenic 15.0%
!!! ATTTAAAACTTTGATAAAAG+GGG + chr1_3:76728545-76728564 None:intergenic 15.0%
!!! CAATTTAAAACTTTGATAAA+AGG + chr1_3:76728547-76728566 None:intergenic 15.0%
!! AAACACTTTATTATATAACA+TGG + chr1_3:76729011-76729030 None:intergenic 15.0%
!!! ATTTATCTCCATTATAATTT+TGG - chr1_3:76729057-76729076 Msa0141560:intron 15.0%
!!! TTTATCTCCATTATAATTTT+GGG - chr1_3:76729058-76729077 Msa0141560:intron 15.0%
!!! TCATAAAAAAGCATATATAT+AGG - chr1_3:76729336-76729355 Msa0141560:intron 15.0%
!!! TATCTACATATTTAAACTTT+TGG + chr1_3:76729646-76729665 None:intergenic 15.0%
!! TTATCATTAAGAATGAATGA+TGG + chr1_3:76727354-76727373 None:intergenic 20.0%
!! AATTGTTCAATCTTAATCAA+TGG - chr1_3:76727661-76727680 Msa0141560:intron 20.0%
!! TGGTATTAAAAGATTTAACT+TGG - chr1_3:76727981-76728000 Msa0141560:CDS 20.0%
!!! AAGATTTAACTTGGTTTATT+TGG - chr1_3:76727990-76728009 Msa0141560:CDS 20.0%
!!! TGGTTTATTTGGAATAAATT+AGG - chr1_3:76728001-76728020 Msa0141560:CDS 20.0%
!!! TTATTTGGAATAAATTAGGA+TGG - chr1_3:76728005-76728024 Msa0141560:CDS 20.0%
!!! TCTATTTTGTGATTAAATTC+AGG - chr1_3:76728351-76728370 Msa0141560:intron 20.0%
!!! TTTAAAACTTTGATAAAAGG+GGG + chr1_3:76728544-76728563 None:intergenic 20.0%
!!! TTTTATTTTTGTAATGGAAG+TGG - chr1_3:76729033-76729052 Msa0141560:intron 20.0%
!!! TTATCTCCATTATAATTTTG+GGG - chr1_3:76729059-76729078 Msa0141560:intron 20.0%
!!! TTTTTTCCCCAAAATTATAA+TGG + chr1_3:76729068-76729087 None:intergenic 20.0%
!!! ATAATTTTGGGGAAAAAAAT+TGG - chr1_3:76729070-76729089 Msa0141560:CDS 20.0%
!!! CAAGGTTTTAATTTTATTTG+TGG + chr1_3:76729175-76729194 None:intergenic 20.0%
!!! AAAAAGCATATATATAGGAA+CGG - chr1_3:76729341-76729360 Msa0141560:intron 20.0%
!! AAATGATATTGAAATGCAAA+AGG - chr1_3:76729579-76729598 Msa0141560:intron 20.0%
!! AATGATATTGAAATGCAAAA+GGG - chr1_3:76729580-76729599 Msa0141560:intron 20.0%
!! TTGAAAAGGAAATTATATTG+AGG - chr1_3:76729891-76729910 Msa0141560:five_prime_UTR 20.0%
! AGAGAGAAGGAAAAAAAAAA+TGG - chr1_3:76727125-76727144 Msa0141560:three_prime_UTR 25.0%
! AGAAGGAAAAAAAAAATGGA+AGG - chr1_3:76727129-76727148 Msa0141560:three_prime_UTR 25.0%
! AAAAAAAAATGGAAGGAGAT+AGG - chr1_3:76727136-76727155 Msa0141560:three_prime_UTR 25.0%
! TGGTATGAACATAATAACAA+AGG - chr1_3:76727227-76727246 Msa0141560:three_prime_UTR 25.0%
! ATCATTAGATCGATATTGAA+CGG - chr1_3:76727612-76727631 Msa0141560:intron 25.0%
! ATAAATTAGGATGGAGAAAT+TGG - chr1_3:76728014-76728033 Msa0141560:CDS 25.0%
! AAAATTAAGATGCCAAGTAA+AGG - chr1_3:76728044-76728063 Msa0141560:CDS 25.0%
!!! TTTTCAGGTTCATAATTTCT+AGG + chr1_3:76728165-76728184 None:intergenic 25.0%
! TTAAAACTTTGATAAAAGGG+GGG + chr1_3:76728543-76728562 None:intergenic 25.0%
! CTCGTCACTAAATTTATTAA+CGG - chr1_3:76728633-76728652 Msa0141560:intron 25.0%
! CAAAAAAAAACAATATGTCG+CGG - chr1_3:76728731-76728750 Msa0141560:CDS 25.0%
! ATCAACAAGCATAAAAAATG+GGG + chr1_3:76728787-76728806 None:intergenic 25.0%
! CATCAACAAGCATAAAAAAT+GGG + chr1_3:76728788-76728807 None:intergenic 25.0%
! TCATCAACAAGCATAAAAAA+TGG + chr1_3:76728789-76728808 None:intergenic 25.0%
!! GTATTAATGGATGTAAACTT+TGG - chr1_3:76728820-76728839 Msa0141560:CDS 25.0%
! ATGATCATTGTAGCAATTAT+GGG - chr1_3:76728943-76728962 Msa0141560:intron 25.0%
!!! CAAGATATAATTTTTCAGCA+AGG + chr1_3:76728978-76728997 None:intergenic 25.0%
! CTTGCTGAAAAATTATATCT+TGG - chr1_3:76728976-76728995 Msa0141560:intron 25.0%
! CTGAAAAATTATATCTTGGA+GGG - chr1_3:76728980-76728999 Msa0141560:intron 25.0%
! TTGATATGTTCATAGTTCAT+TGG + chr1_3:76729204-76729223 None:intergenic 25.0%
! TGTAGAAAATGGAGTAATAT+TGG - chr1_3:76729528-76729547 Msa0141560:intron 25.0%
! TAAGTTACATTATGGATAAC+CGG + chr1_3:76729851-76729870 None:intergenic 25.0%
!! TTTTGCATACTTTGTTGAAA+AGG - chr1_3:76729877-76729896 Msa0141560:five_prime_UTR 25.0%
TCTCTCTATCAGTAGTATTA+TGG + chr1_3:76727112-76727131 None:intergenic 30.0%
TAATACTACTGATAGAGAGA+AGG - chr1_3:76727112-76727131 Msa0141560:three_prime_UTR 30.0%
AGACAAATCATTGCTATGTA+AGG + chr1_3:76727192-76727211 None:intergenic 30.0%
! GCAATGATTTGTCTACAATT+TGG - chr1_3:76727198-76727217 Msa0141560:three_prime_UTR 30.0%
AACATAAGAAATGTGATCCT+TGG + chr1_3:76727475-76727494 None:intergenic 30.0%
TTTATGCAAATGTTCGTGTT+GGG - chr1_3:76727493-76727512 Msa0141560:CDS 30.0%
GATTTAGATGACATGATTGT+AGG + chr1_3:76727595-76727614 None:intergenic 30.0%
TTTGTATAATGTCATCACCA+TGG + chr1_3:76728100-76728119 None:intergenic 30.0%
! ATGGTGATGACATTATACAA+AGG - chr1_3:76728099-76728118 Msa0141560:intron 30.0%
! AATTGCTGTGACTTTTGTTA+TGG - chr1_3:76728447-76728466 Msa0141560:CDS 30.0%
!!! GAGTTTTTTTAGTAGTGTGA+TGG - chr1_3:76728688-76728707 Msa0141560:CDS 30.0%
!! TTTTTAGTAGTGTGATGGTT+TGG - chr1_3:76728693-76728712 Msa0141560:CDS 30.0%
! CTTGTTGATGAATTTATCGA+GGG - chr1_3:76728798-76728817 Msa0141560:CDS 30.0%
!! GAATTTATCGAGGGTATTAA+TGG - chr1_3:76728807-76728826 Msa0141560:CDS 30.0%
GATGATCATTGTAGCAATTA+TGG - chr1_3:76728942-76728961 Msa0141560:intron 30.0%
GCTGAAAAATTATATCTTGG+AGG - chr1_3:76728979-76728998 Msa0141560:intron 30.0%
TCACATCGCAATTATAATTG+TGG + chr1_3:76729117-76729136 None:intergenic 30.0%
CTTTAATATTGCATCACAAG+TGG - chr1_3:76729148-76729167 Msa0141560:CDS 30.0%
ATAGTTCATTGGATTGAACA+AGG + chr1_3:76729193-76729212 None:intergenic 30.0%
ATTTGTGATTGCAGTGTTAT+TGG - chr1_3:76729403-76729422 Msa0141560:intron 30.0%
!! ATGAAGTGTTGTGTAGAAAA+TGG - chr1_3:76729517-76729536 Msa0141560:intron 30.0%
ATATTGGAAACAGTGATTGA+AGG - chr1_3:76729544-76729563 Msa0141560:intron 30.0%
TTATCATCACTACCTTTCTT+TGG - chr1_3:76729773-76729792 Msa0141560:CDS 30.0%
! TACCTTTCTTTGGAAAACTT+TGG - chr1_3:76729783-76729802 Msa0141560:CDS 30.0%
! TACCAAAGTTTTCCAAAGAA+AGG + chr1_3:76729788-76729807 None:intergenic 30.0%
!! CTTTGGTAAAGCATTTTTAG+TGG - chr1_3:76729800-76729819 Msa0141560:CDS 30.0%
!!! AGCATTTTTAGTGGTTGATT+AGG - chr1_3:76729809-76729828 Msa0141560:exon 30.0%
AAGTTACATTATGGATAACC+GGG + chr1_3:76729850-76729869 None:intergenic 30.0%
AGAAACAGAGTTGTATACAG+AGG + chr1_3:76727076-76727095 None:intergenic 35.0%
!!! TGTCTACAATTTGGTTTTGC+TGG - chr1_3:76727207-76727226 Msa0141560:three_prime_UTR 35.0%
CTCTCAAGAACAATAGCAAA+TGG + chr1_3:76727327-76727346 None:intergenic 35.0%
!! CATTTGCTATTGTTCTTGAG+AGG - chr1_3:76727325-76727344 Msa0141560:CDS 35.0%
! CACACTCTATTTCTTGTCAT+TGG - chr1_3:76727436-76727455 Msa0141560:CDS 35.0%
GTTTATGCAAATGTTCGTGT+TGG - chr1_3:76727492-76727511 Msa0141560:CDS 35.0%
! TATAGGTTCTGATCAATCAC+AGG + chr1_3:76727783-76727802 None:intergenic 35.0%
ATCAGAACCTATACTATGCT+GGG - chr1_3:76727790-76727809 Msa0141560:intron 35.0%
ATTTCAACCCAGCATAGTAT+AGG + chr1_3:76727800-76727819 None:intergenic 35.0%
TAATAGCACATGAGTAGGTT+GGG + chr1_3:76727830-76727849 None:intergenic 35.0%
ATTGCTAATAGCACATGAGT+AGG + chr1_3:76727835-76727854 None:intergenic 35.0%
!! TTGTCATGGCAGTTATTTTC+AGG - chr1_3:76727874-76727893 Msa0141560:intron 35.0%
GAACTGTAATTACAGTTGCT+GGG - chr1_3:76728073-76728092 Msa0141560:CDS 35.0%
AACTGTAATTACAGTTGCTG+GGG - chr1_3:76728074-76728093 Msa0141560:CDS 35.0%
TGATTCTGGTGAAAAGGATT+GGG - chr1_3:76728191-76728210 Msa0141560:intron 35.0%
! AGAAATATCGACTGTGATCT+TGG + chr1_3:76728757-76728776 None:intergenic 35.0%
! GCTTGTTGATGAATTTATCG+AGG - chr1_3:76728797-76728816 Msa0141560:CDS 35.0%
GTCTTACCTACTATGTTCAA+GGG - chr1_3:76728866-76728885 Msa0141560:CDS 35.0%
GGATAGTCATGCAAAAGAAA+GGG - chr1_3:76728887-76728906 Msa0141560:CDS 35.0%
GCTACAATGATCATCATCAA+AGG + chr1_3:76728937-76728956 None:intergenic 35.0%
AAGCATATATATAGGAACGG+TGG - chr1_3:76729344-76729363 Msa0141560:intron 35.0%
!!! GGAGCTATTTTGATCGTAAT+AGG - chr1_3:76729424-76729443 Msa0141560:intron 35.0%
TAGGACTTTACTCAGTTCTA+TGG - chr1_3:76729443-76729462 Msa0141560:CDS 35.0%
AGGACTTTACTCAGTTCTAT+GGG - chr1_3:76729444-76729463 Msa0141560:CDS 35.0%
TGAAGAAGAGACAATAACTG+AGG - chr1_3:76729492-76729511 Msa0141560:intron 35.0%
GAAGAAGAGACAATAACTGA+GGG - chr1_3:76729493-76729512 Msa0141560:intron 35.0%
GATATTGAAATGCAAAAGGG+TGG - chr1_3:76729583-76729602 Msa0141560:intron 35.0%
!! TGGAGCTACTAAAGTTTTGA+GGG - chr1_3:76729603-76729622 Msa0141560:intron 35.0%
ATCACGTAGAGTTGAGAAAT+TGG - chr1_3:76729714-76729733 Msa0141560:CDS 35.0%
TCACGTAGAGTTGAGAAATT+GGG - chr1_3:76729715-76729734 Msa0141560:CDS 35.0%
! GATGATAATGAGGATGAAGA+AGG + chr1_3:76729761-76729780 None:intergenic 35.0%
! GAAAGGTAGTGATGATAATG+AGG + chr1_3:76729771-76729790 None:intergenic 35.0%
TTGATTAGGACCATTAAGTG+TGG - chr1_3:76729823-76729842 Msa0141560:five_prime_UTR 35.0%
TGATTAGGACCATTAAGTGT+GGG - chr1_3:76729824-76729843 Msa0141560:five_prime_UTR 35.0%
GAACATAGTGACTCATTCCA+CGG + chr1_3:76727263-76727282 None:intergenic 40.0%
! CTCTATTTCTTGTCATTGGC+AGG - chr1_3:76727440-76727459 Msa0141560:CDS 40.0%
TTGTCATTGGCAGGAAGATA+AGG - chr1_3:76727449-76727468 Msa0141560:CDS 40.0%
GATCAGAACCTATACTATGC+TGG - chr1_3:76727789-76727808 Msa0141560:intron 40.0%
AATAGCACATGAGTAGGTTG+GGG + chr1_3:76727829-76727848 None:intergenic 40.0%
CTAATAGCACATGAGTAGGT+TGG + chr1_3:76727831-76727850 None:intergenic 40.0%
CCATGACAAATGTCATTGCT+GGG + chr1_3:76727863-76727882 None:intergenic 40.0%
AGATGCCAAGTAAAGGTGAT+TGG - chr1_3:76728051-76728070 Msa0141560:CDS 40.0%
CAGTTCCAATCACCTTTACT+TGG + chr1_3:76728059-76728078 None:intergenic 40.0%
GGAACTGTAATTACAGTTGC+TGG - chr1_3:76728072-76728091 Msa0141560:CDS 40.0%
! CCAGAATCAGTAGTGTTTTC+AGG + chr1_3:76728180-76728199 None:intergenic 40.0%
!! CCTGAAAACACTACTGATTC+TGG - chr1_3:76728177-76728196 Msa0141560:intron 40.0%
!! CACTACTGATTCTGGTGAAA+AGG - chr1_3:76728185-76728204 Msa0141560:intron 40.0%
CTGATTCTGGTGAAAAGGAT+TGG - chr1_3:76728190-76728209 Msa0141560:intron 40.0%
GGTGAAAAGGATTGGGTTAA+AGG - chr1_3:76728198-76728217 Msa0141560:intron 40.0%
AAGCAAAGGTGGCAATAATG+AGG + chr1_3:76728233-76728252 None:intergenic 40.0%
TCATTATTGCCACCTTTGCT+TGG - chr1_3:76728232-76728251 Msa0141560:intron 40.0%
CATTATTGCCACCTTTGCTT+GGG - chr1_3:76728233-76728252 Msa0141560:intron 40.0%
GGCTTCTTTCTTCATTCTTC+AGG - chr1_3:76728254-76728273 Msa0141560:intron 40.0%
AAATTCAGGCTGTGACATTG+AGG - chr1_3:76728365-76728384 Msa0141560:intron 40.0%
ACAGCTATAGTGTGTTCCTT+GGG - chr1_3:76728412-76728431 Msa0141560:intron 40.0%
AATTGATTGAAGTGTGCCCA+AGG + chr1_3:76728431-76728450 None:intergenic 40.0%
!! AAATGCTTGGAGCATTGGTT+GGG - chr1_3:76728480-76728499 Msa0141560:CDS 40.0%
GATGTAAACTTTGGTGAGCA+GGG - chr1_3:76728829-76728848 Msa0141560:CDS 40.0%
GAGCAGGGTATAATATCATC+AGG - chr1_3:76728844-76728863 Msa0141560:CDS 40.0%
GGTCTTACCTACTATGTTCA+AGG - chr1_3:76728865-76728884 Msa0141560:CDS 40.0%
GACTATCCCTTGAACATAGT+AGG + chr1_3:76728875-76728894 None:intergenic 40.0%
GGGATAGTCATGCAAAAGAA+AGG - chr1_3:76728886-76728905 Msa0141560:CDS 40.0%
CTGAAAGCAGTGACAAAAAC+TGG + chr1_3:76728913-76728932 None:intergenic 40.0%
AGGAACGGTGGTAAACAATT+TGG - chr1_3:76729356-76729375 Msa0141560:intron 40.0%
GGACTTTACTCAGTTCTATG+GGG - chr1_3:76729445-76729464 Msa0141560:CDS 40.0%
! GTGGAGCTACTAAAGTTTTG+AGG - chr1_3:76729602-76729621 Msa0141560:intron 40.0%
GTAGAGTTGAGAAATTGGGA+GGG - chr1_3:76729719-76729738 Msa0141560:CDS 40.0%
TAGAGTTGAGAAATTGGGAG+GGG - chr1_3:76729720-76729739 Msa0141560:CDS 40.0%
ACAAAGGTTTCACTCAACCG+TGG - chr1_3:76727243-76727262 Msa0141560:three_prime_UTR 45.0%
!! GTCAGAAAAGTACTAACCCG+AGG + chr1_3:76727522-76727541 None:intergenic 45.0%
CCCAGCAATGACATTTGTCA+TGG - chr1_3:76727860-76727879 Msa0141560:intron 45.0%
GCCATGACAAATGTCATTGC+TGG + chr1_3:76727864-76727883 None:intergenic 45.0%
GAAGAAAGAAGCCCAAGCAA+AGG + chr1_3:76728247-76728266 None:intergenic 45.0%
CACAGCTATAGTGTGTTCCT+TGG - chr1_3:76728411-76728430 Msa0141560:intron 45.0%
TGGAGCATAAGCCAAATGCT+TGG - chr1_3:76728467-76728486 Msa0141560:CDS 45.0%
AAGCCAAATGCTTGGAGCAT+TGG - chr1_3:76728475-76728494 Msa0141560:CDS 45.0%
CAACCAATGCTCCAAGCATT+TGG + chr1_3:76728481-76728500 None:intergenic 45.0%
!! CAAATGCTTGGAGCATTGGT+TGG - chr1_3:76728479-76728498 Msa0141560:CDS 45.0%
!! GTAGTGTGATGGTTTGGTTC+TGG - chr1_3:76728699-76728718 Msa0141560:CDS 45.0%
GGATGTAAACTTTGGTGAGC+AGG - chr1_3:76728828-76728847 Msa0141560:CDS 45.0%
CGTAGAGTTGAGAAATTGGG+AGG - chr1_3:76729718-76729737 Msa0141560:CDS 45.0%
!! TTATAAATTAATTAAGAAAT+TGG - chr1_3:76728288-76728307 Msa0141560:intron 5.0%
TTGGCAGGAAGATAAGGCCA+AGG - chr1_3:76727455-76727474 Msa0141560:CDS 50.0%
ATGTTCGTGTTGGGACTCCT+CGG - chr1_3:76727502-76727521 Msa0141560:CDS 50.0%
AATTACAGTTGCTGGGGCCA+TGG - chr1_3:76728080-76728099 Msa0141560:CDS 50.0%
GAAAGAAGCCCAAGCAAAGG+TGG + chr1_3:76728244-76728263 None:intergenic 50.0%
!! GTGTGATGGTTTGGTTCTGG+TGG - chr1_3:76728702-76728721 Msa0141560:CDS 50.0%
ATAACCGGGCCCACACTTAA+TGG + chr1_3:76729836-76729855 None:intergenic 50.0%
TGTTCGTGTTGGGACTCCTC+GGG - chr1_3:76727503-76727522 Msa0141560:CDS 55.0%
AGGGGGGAGACTTACAGCAT+AGG + chr1_3:76728527-76728546 None:intergenic 55.0%
AGGACCATTAAGTGTGGGCC+CGG - chr1_3:76729829-76729848 Msa0141560:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 76727041 76729922 76727041 ID=Msa0141560;Name=Msa0141560
chr1_3 mRNA 76727041 76729922 76727041 ID=Msa0141560-mRNA-1;Parent=Msa0141560;Name=Msa0141560-mRNA-1;_AED=0.12;_eAED=0.12;_QI=103|1|1|1|1|1|7|268|394
chr1_3 exon 76727041 76727546 76727041 ID=Msa0141560-mRNA-1:exon:26746;Parent=Msa0141560-mRNA-1
chr1_3 exon 76727962 76728113 76727962 ID=Msa0141560-mRNA-1:exon:26745;Parent=Msa0141560-mRNA-1
chr1_3 exon 76728432 76728590 76728432 ID=Msa0141560-mRNA-1:exon:26744;Parent=Msa0141560-mRNA-1
chr1_3 exon 76728688 76728940 76728688 ID=Msa0141560-mRNA-1:exon:26743;Parent=Msa0141560-mRNA-1
chr1_3 exon 76729068 76729184 76729068 ID=Msa0141560-mRNA-1:exon:26742;Parent=Msa0141560-mRNA-1
chr1_3 exon 76729439 76729501 76729439 ID=Msa0141560-mRNA-1:exon:26741;Parent=Msa0141560-mRNA-1
chr1_3 exon 76729617 76729922 76729617 ID=Msa0141560-mRNA-1:exon:26740;Parent=Msa0141560-mRNA-1
chr1_3 five_prime_UTR 76729820 76729922 76729820 ID=Msa0141560-mRNA-1:five_prime_utr;Parent=Msa0141560-mRNA-1
chr1_3 CDS 76729617 76729819 76729617 ID=Msa0141560-mRNA-1:cds;Parent=Msa0141560-mRNA-1
chr1_3 CDS 76729439 76729501 76729439 ID=Msa0141560-mRNA-1:cds;Parent=Msa0141560-mRNA-1
chr1_3 CDS 76729068 76729184 76729068 ID=Msa0141560-mRNA-1:cds;Parent=Msa0141560-mRNA-1
chr1_3 CDS 76728688 76728940 76728688 ID=Msa0141560-mRNA-1:cds;Parent=Msa0141560-mRNA-1
chr1_3 CDS 76728432 76728590 76728432 ID=Msa0141560-mRNA-1:cds;Parent=Msa0141560-mRNA-1
chr1_3 CDS 76727962 76728113 76727962 ID=Msa0141560-mRNA-1:cds;Parent=Msa0141560-mRNA-1
chr1_3 CDS 76727309 76727546 76727309 ID=Msa0141560-mRNA-1:cds;Parent=Msa0141560-mRNA-1
chr1_3 three_prime_UTR 76727041 76727308 76727041 ID=Msa0141560-mRNA-1:three_prime_utr;Parent=Msa0141560-mRNA-1
Gene Sequence

>Msa0141560

ATGGAAGGAGATAGGTGTAGTACAAGTTTTTTTCAAAGATGCAAGCCTTACATAGCAATGATTTGTCTACAATTTGGTTTTGCTGGTATGAACATAATAACAAAGGTTTCACTCAACCGTGGAATGAGTCACTATGTTCTTGTTGTTTATAGACATGCTTTTGCTACTGCTGTTATTGCTCCATTTGCTATTGTTCTTGAGAGGAAGATAAGGCCAAGGATCACATTTCTTATGTTTATGCAAATGTTCGTGTTGGGACTCCTCGGGCCTGTGATTGATCAGAACCTATACTATGCTGGGTTGAAATTCACTTCCCCAACCTACTCATGTGCTATTAGCAATATTCTCCCAGCAATGACATTTGTCATGGCAGTTATTTTCAGGATGGAGAAATTGGACTTGAAAAAATTAAGATGCCAAGTAAAGGTGATTGGAACTGTAATTACAGTTGCTGGGGCCATGGTGATGACATTATACAAAGGACAAGTTATTAATATATTGAGTTCTCAATACATGCATCATCCTAGAAATTATGAACCTGAAAACACTACTGATTCTGGTGAAAAGGATTGGGTTAAAGGTTCTATTCTCCTCATTATTGCCACCTTTGCTTGGGCTTCTTTCTTCATTCTTCAGGCTGTGACATTGAGGAAATACTCAGCTCAACTCTCACTCACAGCTATAGTGTGTTCCTTGGGCACACTTCAATCAATTGCTGTGACTTTTGTTATGGAGCATAAGCCAAATGCTTGGAGCATTGGTTGGGACATGAACTTATTAGCTGCAGCCTATGCTGGTATAATATCATCAGGTCTTACCTACTATGTTCAAGGGATAGTCATGCAAAAGAAAGGGCCAGTTTTTGTCACTGCTTTCAGTCCTTTGATGATGATCATTGTAGCAATTATGGGCACTTTCATCCTTGCTGAAAAATTATATCTTGGAGGTGTTATTGGAGCTATTTTGATCGTAATAGGACTTTACTCAGTTCTATGGGGCAAAAGCAAAGAAAATAAAGAGATTGAAGAAGAGACAATAACTGAGGGAATGAAGTGTTGTGTAGAAAATGGAGTAATATTGGAAACAGTGATTGAAGGTGTTGAAGAAACAAATGATATTGAAATGCAAAAGGGTGGAGCTACTAAAGTTTTGAGGGTAGCAATTATTAGTGTTCCAAAAGTTTAA
Protein sequence

>Msa0141560

MEGDRCSTSFFQRCKPYIAMICLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNILPAMTFVMAVIFRMEKLDLKKLRCQVKVIGTVITVAGAMVMTLYKGQVINILSSQYMHHPRNYEPENTTDSGEKDWVKGSILLIIATFAWASFFILQAVTLRKYSAQLSLTAIVCSLGTLQSIAVTFVMEHKPNAWSIGWDMNLLAAAYAGIISSGLTYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGTFILAEKLYLGGVIGAILIVIGLYSVLWGKSKENKEIEEETITEGMKCCVENGVILETVIEGVEETNDIEMQKGGATKVLRVAIISVPKV*