AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1161150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161150 MtrunA17_Chr7g0255561 97.462 394 9 1 1 394 1 393 0.0 787
Msa1161150 MtrunA17_Chr7g0255581 97.462 394 9 1 1 394 1 393 0.0 787
Msa1161150 MtrunA17_Chr8g0354121 63.710 372 125 5 11 373 9 379 7.44e-171 483
Msa1161150 MtrunA17_Chr3g0081511 59.079 391 151 5 2 388 4 389 1.76e-163 464
Msa1161150 MtrunA17_Chr3g0081421 57.881 387 154 4 1 381 3 386 5.31e-161 457
Msa1161150 MtrunA17_Chr1g0160171 51.404 356 167 2 4 357 3 354 4.46e-128 374
Msa1161150 MtrunA17_Chr7g0263101 52.853 333 152 2 6 337 4 332 2.63e-125 366
Msa1161150 MtrunA17_Chr3g0114691 47.165 388 195 6 2 383 7 390 3.60e-125 367
Msa1161150 MtrunA17_Chr1g0182291 49.577 355 168 4 7 356 7 355 1.58e-121 356
Msa1161150 MtrunA17_Chr3g0114731 47.633 338 171 1 11 348 14 345 1.02e-112 335
Msa1161150 MtrunA17_Chr1g0160181 47.041 338 176 2 8 344 11 346 2.71e-110 328
Msa1161150 MtrunA17_Chr3g0114711 41.598 363 170 4 12 337 11 368 1.23e-104 314
Msa1161150 MtrunA17_Chr3g0114701 45.783 332 177 2 9 339 3 332 5.82e-100 302
Msa1161150 MtrunA17_Chr1g0186601 42.407 349 188 6 11 354 12 352 4.55e-94 286
Msa1161150 MtrunA17_Chr1g0171301 42.330 352 196 4 6 356 7 352 8.04e-94 285
Msa1161150 MtrunA17_Chr1g0186611 42.560 336 185 3 11 345 12 340 2.53e-90 276
Msa1161150 MtrunA17_Chr1g0186571 42.388 335 185 3 12 345 10 337 2.62e-89 273
Msa1161150 MtrunA17_Chr1g0186641 41.888 339 189 4 12 348 10 342 5.59e-89 272
Msa1161150 MtrunA17_Chr1g0186561 43.155 336 184 3 11 345 12 341 6.56e-89 273
Msa1161150 MtrunA17_Chr7g0271561 38.965 367 217 4 16 377 8 372 1.53e-86 267
Msa1161150 MtrunA17_Chr6g0463971 36.620 355 218 4 12 365 13 361 3.65e-85 263
Msa1161150 MtrunA17_Chr3g0142131 39.655 348 201 1 5 343 10 357 6.52e-82 256
Msa1161150 MtrunA17_Chr2g0278561 38.551 345 205 3 1 343 3 342 2.27e-80 252
Msa1161150 MtrunA17_Chr4g0059311 37.462 331 202 2 10 339 6 332 1.02e-79 249
Msa1161150 MtrunA17_Chr2g0278541 38.507 335 198 3 15 343 12 344 1.39e-79 250
Msa1161150 MtrunA17_Chr2g0290611 38.824 340 200 3 12 348 9 343 1.40e-79 249
Msa1161150 MtrunA17_Chr1g0184221 34.957 349 205 2 11 345 12 352 2.64e-79 248
Msa1161150 MtrunA17_Chr1g0155761 38.617 347 199 2 12 344 18 364 9.20e-79 248
Msa1161150 MtrunA17_Chr2g0278551 38.872 337 199 3 15 348 12 344 2.19e-75 239
Msa1161150 MtrunA17_Chr4g0050881 38.253 332 200 4 15 344 9 337 2.72e-75 238
Msa1161150 MtrunA17_Chr6g0483401 37.202 336 211 0 24 359 19 354 4.26e-74 234
Msa1161150 MtrunA17_Chr3g0129571 33.714 350 217 2 16 350 8 357 7.18e-74 234
Msa1161150 MtrunA17_Chr3g0129601 33.431 341 214 2 15 349 29 362 1.65e-72 231
Msa1161150 MtrunA17_Chr2g0284261 36.474 329 203 3 12 340 5 327 3.82e-72 229
Msa1161150 MtrunA17_Chr4g0051021 36.522 345 211 4 12 352 11 351 1.28e-71 229
Msa1161150 MtrunA17_Chr8g0334761 35.422 367 224 3 16 377 11 369 2.58e-71 228
Msa1161150 MtrunA17_Chr4g0050891 37.500 328 194 3 11 332 9 331 1.13e-70 226
Msa1161150 MtrunA17_Chr1g0160111 33.973 365 215 4 24 377 16 365 9.92e-70 224
Msa1161150 MtrunA17_Chr2g0332001 35.905 337 210 3 10 345 33 364 2.39e-69 223
Msa1161150 MtrunA17_Chr4g0050941 37.240 384 227 7 11 388 8 383 4.17e-69 223
Msa1161150 MtrunA17_Chr1g0177221 42.857 252 138 2 15 265 18 264 9.16e-69 218
Msa1161150 MtrunA17_Chr1g0164831 35.000 340 210 4 15 351 3 334 3.49e-68 219
Msa1161150 MtrunA17_Chr3g0129591 35.780 327 202 3 16 337 6 329 1.40e-66 215
Msa1161150 MtrunA17_Chr8g0334751 36.812 345 205 4 16 355 12 348 1.21e-63 207
Msa1161150 MtrunA17_Chr8g0383731 33.535 331 214 2 12 338 2 330 5.64e-63 206
Msa1161150 MtrunA17_Chr5g0413941 35.671 328 205 3 19 345 11 333 5.52e-62 203
Msa1161150 MtrunA17_Chr8g0334771 35.119 336 203 3 16 345 11 337 7.33e-62 203
Msa1161150 MtrunA17_Chr3g0126101 34.012 344 214 5 16 356 7 340 1.16e-61 202
Msa1161150 MtrunA17_Chr3g0129581 35.549 346 215 3 16 356 6 348 1.50e-61 202
Msa1161150 MtrunA17_Chr2g0310441 32.410 361 236 4 16 374 11 365 2.68e-60 199
Msa1161150 MtrunA17_Chr5g0413961 31.402 328 217 2 12 339 11 330 5.84e-60 198
Msa1161150 MtrunA17_Chr1g0150151 31.503 346 228 4 1 344 1 339 1.47e-59 197
Msa1161150 MtrunA17_Chr5g0413921 35.366 328 202 5 20 344 12 332 3.92e-59 195
Msa1161150 MtrunA17_Chr5g0413951 35.404 322 196 5 20 337 12 325 5.81e-58 192
Msa1161150 MtrunA17_Chr7g0227921 34.320 338 207 6 11 344 7 333 5.56e-57 190
Msa1161150 MtrunA17_Chr4g0073241 30.792 341 222 4 16 351 9 340 4.85e-56 188
Msa1161150 MtrunA17_Chr5g0407971 35.015 337 205 4 15 339 11 345 8.02e-56 188
Msa1161150 MtrunA17_Chr5g0413931 34.146 328 206 5 20 344 11 331 1.91e-54 183
Msa1161150 MtrunA17_Chr4g0050931 32.754 345 184 4 11 349 8 310 4.76e-54 181
Msa1161150 MtrunA17_Chr6g0451171 31.694 366 237 7 9 372 6 360 2.37e-53 181
Msa1161150 MtrunA17_Chr5g0408001 34.808 339 207 4 15 341 10 346 5.16e-53 181
Msa1161150 MtrunA17_Chr5g0407991 34.211 342 213 2 15 345 9 349 4.50e-52 178
Msa1161150 MtrunA17_Chr4g0051001 33.443 305 200 2 12 315 28 330 4.58e-52 176
Msa1161150 MtrunA17_Chr6g0451251 33.989 356 223 5 9 362 6 351 1.28e-51 176
Msa1161150 MtrunA17_Chr6g0451201 32.402 358 230 6 5 362 2 347 2.03e-51 176
Msa1161150 MtrunA17_Chr5g0428881 28.698 338 240 1 10 347 13 349 4.70e-51 175
Msa1161150 MtrunA17_Chr5g0408031 33.626 342 211 4 12 339 7 346 1.95e-50 174
Msa1161150 MtrunA17_Chr5g0408041 34.694 343 208 4 15 343 11 351 7.56e-50 172
Msa1161150 MtrunA17_Chr6g0451211 32.647 340 215 6 9 344 6 335 2.80e-48 167
Msa1161150 MtrunA17_Chr3g0126091 29.917 361 229 6 16 369 12 355 1.14e-47 166
Msa1161150 MtrunA17_Chr5g0441761 28.228 333 229 2 19 351 18 340 1.86e-47 165
Msa1161150 MtrunA17_Chr8g0369841 30.357 336 222 2 15 339 9 343 3.36e-46 162
Msa1161150 MtrunA17_Chr1g0211801 32.677 254 166 3 12 265 8 256 1.62e-42 150
Msa1161150 MtrunA17_Chr6g0451261 29.841 315 212 5 5 318 4 310 6.79e-41 154
Msa1161150 MtrunA17_Chr5g0429001 29.893 281 192 2 68 347 8 284 8.90e-40 144
Msa1161150 MtrunA17_Chr5g0404811 34.842 221 142 1 123 343 1 219 8.63e-39 139
Msa1161150 MtrunA17_Chr3g0084091 30.864 243 165 1 95 337 10 249 1.86e-38 140
Msa1161150 MtrunA17_Chr2g0278021 35.484 217 133 3 129 340 1 215 2.74e-33 125
Msa1161150 MtrunA17_Chr6g0451191 31.984 247 156 5 129 373 1 237 4.96e-33 124
Msa1161150 MtrunA17_Chr4g0056081 28.783 337 207 10 19 338 18 338 1.05e-32 125
Msa1161150 MtrunA17_Chr1g0182261 45.714 140 73 3 208 344 78 217 3.22e-32 121
Msa1161150 MtrunA17_Chr1g0182261 40.000 75 45 0 11 85 10 84 2.55e-13 68.9
Msa1161150 MtrunA17_Chr8g0334711 35.644 202 116 4 16 212 11 203 1.97e-31 119
Msa1161150 MtrunA17_Chr5g0399281 27.640 322 227 5 19 338 12 329 3.63e-30 119
Msa1161150 MtrunA17_Chr1g0172881 42.177 147 68 5 123 265 16 149 7.58e-28 107
Msa1161150 MtrunA17_Chr5g0404801 44.444 117 65 0 12 128 4 120 2.21e-25 99.8
Msa1161150 MtrunA17_Chr8g0372571 93.478 46 3 0 244 289 1 46 1.57e-24 95.9
Msa1161150 MtrunA17_Chr2g0278031 42.342 111 64 0 15 125 14 124 2.74e-24 97.1
Msa1161150 MtrunA17_Chr4g0021721 91.304 46 4 0 244 289 1 46 7.40e-24 93.6
Msa1161150 MtrunA17_Chr8g0334721 40.164 122 73 0 229 350 1 122 7.84e-24 97.1
Msa1161150 MtrunA17_Chr1g0177231 50.000 86 42 1 266 351 29 113 3.12e-22 91.3
Msa1161150 MtrunA17_Chr1g0172891 52.500 80 37 1 272 351 13 91 1.69e-20 86.3
Msa1161150 MtrunA17_Chr8g0334731 29.717 212 122 7 16 224 12 199 7.37e-18 81.3
Msa1161150 MtrunA17_Chr4g0050911 40.449 89 52 1 95 182 11 99 5.00e-16 75.1
Msa1161150 MtrunA17_Chr4g0050921 32.353 102 69 0 217 318 3 104 6.28e-16 73.9
Msa1161150 MtrunA17_Chr1g0211811 35.227 88 55 1 267 352 1 88 7.69e-16 72.4
Msa1161150 MtrunA17_Chr6g0451241 52.459 61 27 1 284 344 26 84 1.32e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161150 AT5G07050.1 62.217 397 135 6 1 392 3 389 6.62e-173 488
Msa1161150 AT2G40900.1 53.619 373 160 4 12 382 7 368 3.21e-152 436
Msa1161150 AT3G56620.1 53.209 374 165 3 12 383 7 372 4.88e-142 409
Msa1161150 AT1G21890.1 47.396 384 188 3 15 388 10 389 1.49e-127 373
Msa1161150 AT4G08300.1 49.462 372 173 4 12 373 7 373 2.28e-124 364
Msa1161150 AT2G37460.1 51.176 340 154 3 12 345 11 344 3.29e-123 361
Msa1161150 AT1G44800.1 47.977 346 175 3 12 356 7 348 7.08e-121 355
Msa1161150 AT2G39510.1 47.632 359 182 3 15 372 7 360 2.30e-120 354
Msa1161150 AT1G21890.2 51.961 306 142 1 15 315 10 315 3.71e-114 337
Msa1161150 AT4G08290.1 46.291 337 176 2 1 337 1 332 3.05e-112 333
Msa1161150 AT5G13670.1 45.015 331 175 4 11 338 3 329 1.23e-102 309
Msa1161150 AT2G37450.2 43.235 340 165 3 12 350 5 317 4.49e-90 275
Msa1161150 AT1G09380.1 40.125 319 191 0 16 334 8 326 1.22e-85 265
Msa1161150 AT1G75500.1 37.119 361 218 4 12 365 16 374 7.80e-79 248
Msa1161150 AT1G75500.2 37.119 361 218 4 12 365 16 374 7.80e-79 248
Msa1161150 AT4G08290.2 42.424 264 147 2 1 264 1 259 2.23e-77 241
Msa1161150 AT3G18200.2 39.286 336 194 4 12 345 31 358 4.74e-77 243
Msa1161150 AT3G53210.1 37.500 336 201 2 12 344 6 335 2.10e-73 233
Msa1161150 AT5G64700.1 35.015 337 214 3 15 347 7 342 8.34e-73 231
Msa1161150 AT3G30340.1 34.604 341 218 2 15 353 10 347 5.36e-70 224
Msa1161150 AT1G43650.1 36.023 347 212 4 15 360 6 343 1.95e-68 220
Msa1161150 AT4G30420.2 35.593 354 206 6 15 356 8 351 2.79e-67 218
Msa1161150 AT1G25270.1 36.503 326 205 1 15 340 2 325 3.40e-66 214
Msa1161150 AT4G30420.1 35.652 345 212 4 18 356 1 341 1.20e-65 214
Msa1161150 AT2G37450.3 43.426 251 135 2 101 350 1 245 3.74e-65 209
Msa1161150 AT1G01070.1 34.278 353 224 4 1 351 1 347 1.89e-61 202
Msa1161150 AT1G68170.2 33.934 333 215 2 11 341 8 337 7.91e-57 190
Msa1161150 AT1G68170.1 33.521 355 226 3 15 362 2 353 1.26e-56 189
Msa1161150 AT4G01440.1 31.343 335 218 2 16 346 10 336 5.85e-56 188
Msa1161150 AT1G11450.3 32.386 352 231 4 1 351 1 346 1.33e-55 187
Msa1161150 AT5G40210.1 34.043 329 181 6 19 339 16 316 3.14e-55 185
Msa1161150 AT5G40240.1 31.751 337 226 4 4 338 7 341 3.59e-55 186
Msa1161150 AT5G40240.3 31.751 337 226 4 4 338 7 341 3.59e-55 186
Msa1161150 AT5G40240.2 32.059 340 226 5 2 338 18 355 4.44e-55 186
Msa1161150 AT4G28040.1 32.036 334 204 7 12 340 4 319 5.40e-55 185
Msa1161150 AT4G28040.5 32.036 334 204 7 12 340 4 319 5.40e-55 185
Msa1161150 AT4G28040.3 32.036 334 204 7 12 340 4 319 5.40e-55 185
Msa1161150 AT4G28040.4 32.036 334 204 7 12 340 4 319 5.40e-55 185
Msa1161150 AT4G28040.2 32.036 334 204 7 12 340 4 319 5.40e-55 185
Msa1161150 AT1G11460.1 33.131 329 211 3 12 337 12 334 3.05e-54 183
Msa1161150 AT5G40230.1 31.778 343 222 6 3 339 7 343 4.46e-53 181
Msa1161150 AT2G37450.1 42.411 224 122 2 128 350 61 278 1.09e-52 177
Msa1161150 AT2G37450.1 54.386 57 26 0 12 68 5 61 3.21e-13 70.1
Msa1161150 AT4G01430.1 30.588 340 230 4 12 348 5 341 1.61e-51 176
Msa1161150 AT3G53210.2 36.328 256 154 2 92 344 29 278 8.74e-51 173
Msa1161150 AT5G45370.1 33.535 331 201 3 19 349 23 334 4.20e-50 172
Msa1161150 AT3G28050.1 30.994 342 218 8 10 345 5 334 4.53e-50 172
Msa1161150 AT1G11450.5 33.993 303 193 4 50 351 6 302 1.68e-49 169
Msa1161150 AT3G45870.1 34.154 325 206 3 15 332 11 334 2.22e-49 171
Msa1161150 AT4G01440.3 30.921 304 198 2 16 315 10 305 4.05e-49 169
Msa1161150 AT5G45370.2 32.456 342 214 3 19 349 23 358 4.65e-49 171
Msa1161150 AT5G45370.4 32.456 342 214 3 19 349 23 358 4.65e-49 171
Msa1161150 AT1G01070.2 34.932 292 182 4 62 351 15 300 5.08e-49 169
Msa1161150 AT1G70260.1 29.290 338 227 3 16 345 12 345 1.23e-48 169
Msa1161150 AT1G11450.2 33.667 300 192 4 53 351 2 295 4.78e-48 166
Msa1161150 AT3G53210.3 35.918 245 148 2 12 253 6 244 8.45e-48 164
Msa1161150 AT3G18200.1 38.559 236 135 4 112 345 1 228 1.68e-47 162
Msa1161150 AT3G28130.2 32.047 337 211 7 19 345 16 344 6.89e-47 164
Msa1161150 AT4G19185.1 32.934 334 212 2 17 339 22 354 7.83e-47 165
Msa1161150 AT3G28100.1 31.378 341 219 7 7 340 4 336 1.06e-46 163
Msa1161150 AT5G64700.2 33.071 254 165 3 15 264 7 259 4.26e-46 159
Msa1161150 AT4G15540.1 31.085 341 218 4 1 339 1 326 5.33e-46 161
Msa1161150 AT4G15540.2 31.085 341 218 4 1 339 1 326 5.33e-46 161
Msa1161150 AT3G30340.2 33.865 251 163 1 15 265 10 257 7.49e-46 159
Msa1161150 AT1G11450.4 31.148 305 204 3 12 315 12 311 9.91e-45 157
Msa1161150 AT3G28070.2 35.102 245 153 4 98 340 7 247 1.48e-44 155
Msa1161150 AT3G28070.1 35.102 245 153 4 98 340 99 339 1.58e-43 155
Msa1161150 AT3G45870.8 33.442 308 197 3 15 315 11 317 3.66e-43 153
Msa1161150 AT3G28130.5 34.783 253 157 4 98 345 9 258 3.87e-43 152
Msa1161150 AT3G28130.1 34.783 253 157 4 98 345 9 258 3.87e-43 152
Msa1161150 AT5G47470.1 31.014 345 222 7 4 343 18 351 2.43e-42 152
Msa1161150 AT4G01430.2 30.945 307 206 4 12 315 5 308 2.72e-42 151
Msa1161150 AT5G47470.3 31.014 345 222 7 4 343 46 379 3.49e-42 152
Msa1161150 AT5G47470.2 31.014 345 222 7 4 343 46 379 3.64e-42 152
Msa1161150 AT4G24980.1 29.450 309 148 5 30 338 1 239 4.32e-41 146
Msa1161150 AT3G28080.5 36.475 244 147 6 100 340 9 247 1.17e-40 145
Msa1161150 AT3G28080.7 36.475 244 147 6 100 340 9 247 1.17e-40 145
Msa1161150 AT3G28080.8 36.475 244 147 6 100 340 9 247 1.17e-40 145
Msa1161150 AT3G28080.6 36.475 244 147 6 100 340 9 247 1.17e-40 145
Msa1161150 AT3G28080.1 32.622 328 207 9 19 340 17 336 1.45e-40 147
Msa1161150 AT3G28080.2 36.475 244 147 6 100 340 90 328 7.66e-40 145
Msa1161150 AT1G43650.2 33.466 251 158 3 15 264 6 248 9.30e-40 142
Msa1161150 AT4G01440.4 31.890 254 161 2 16 265 10 255 1.36e-39 142
Msa1161150 AT4G01450.2 32.500 320 199 3 28 342 21 328 1.55e-38 142
Msa1161150 AT4G01450.1 31.058 293 185 3 28 315 21 301 1.31e-36 136
Msa1161150 AT1G11450.1 32.046 259 169 3 94 351 2 254 2.45e-36 133
Msa1161150 AT3G45870.9 34.553 246 154 2 15 253 11 256 6.29e-36 133
Msa1161150 AT4G19185.2 31.783 258 164 2 93 339 20 276 9.93e-36 133
Msa1161150 AT1G60050.1 26.562 384 244 7 16 383 13 374 3.67e-35 133
Msa1161150 AT4G01440.5 30.342 234 151 2 117 346 3 228 2.65e-34 128
Msa1161150 AT4G01440.2 30.342 234 151 2 117 346 3 228 2.65e-34 128
Msa1161150 AT4G01450.4 33.624 229 135 3 28 251 21 237 3.17e-33 125
Msa1161150 AT4G16620.1 31.250 304 196 7 46 343 41 337 3.95e-33 127
Msa1161150 AT3G28070.3 33.182 220 141 4 98 315 99 314 1.35e-32 125
Msa1161150 AT4G01450.3 34.434 212 122 3 28 234 21 220 4.33e-31 119
Msa1161150 AT5G45370.6 31.034 261 163 3 100 349 2 256 1.63e-30 118
Msa1161150 AT5G45370.5 31.034 261 163 3 100 349 2 256 1.63e-30 118
Msa1161150 AT3G28070.5 32.243 214 139 4 129 340 1 210 9.90e-30 115
Msa1161150 AT3G28130.3 32.432 222 142 4 129 345 1 219 1.67e-29 114
Msa1161150 AT3G28080.3 28.528 326 169 8 19 340 17 282 1.61e-27 111
Msa1161150 AT3G28080.4 30.992 242 109 5 100 340 9 193 1.88e-27 108
Msa1161150 AT3G28080.9 33.953 215 134 6 129 340 1 210 5.48e-27 107
Msa1161150 AT3G28100.3 30.645 248 159 5 19 260 17 257 1.23e-26 107
Msa1161150 AT3G45870.5 33.019 212 134 3 128 332 49 259 6.66e-26 106
Msa1161150 AT4G16620.4 30.769 247 160 5 101 343 1 240 5.86e-24 100
Msa1161150 AT4G16620.2 30.769 247 160 5 101 343 1 240 5.86e-24 100
Msa1161150 AT3G28130.4 29.435 248 162 5 19 260 16 256 6.28e-24 100
Msa1161150 AT3G28100.2 32.663 199 122 4 19 212 17 208 3.08e-21 92.4
Msa1161150 AT5G45370.3 28.458 253 162 4 110 349 52 298 5.37e-21 93.2
Msa1161150 AT3G28130.6 31.658 199 124 4 19 212 16 207 3.52e-20 88.6
Msa1161150 AT3G45870.6 31.795 195 125 3 128 315 49 242 5.08e-20 89.0
Msa1161150 AT3G45870.7 31.795 195 125 3 128 315 49 242 5.08e-20 89.0
Msa1161150 AT4G01430.3 27.536 207 145 3 144 348 1 204 5.59e-20 88.6
Msa1161150 AT4G16620.3 29.703 202 134 4 46 245 41 236 5.96e-20 89.4
Msa1161150 AT3G45870.2 33.333 147 97 1 186 332 38 183 2.59e-16 78.2
Msa1161150 AT3G45870.4 32.824 131 81 2 130 253 4 134 7.22e-13 66.6
Msa1161150 AT3G45870.3 33.083 133 82 2 128 253 49 181 1.09e-12 67.0
Msa1161150 AT3G28060.1 27.922 154 88 5 169 315 17 154 1.09e-11 63.2

Find 93 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTACATATTTAAACTTT+TGG 0.203502 7_4:-51354533 None:intergenic
GGCTTCTTTCTTCATTCTTC+AGG 0.214826 7_4:+51353143 Msa1161150:CDS
TTAAATATGTAGATATTATT+AGG 0.226319 7_4:+51354541 Msa1161150:exon
AATTTAATTAAGTTACATTA+TGG 0.226743 7_4:-51354745 None:intergenic
ATAAATTAGGATGGAGAAAT+TGG 0.234772 7_4:+51352903 Msa1161150:intron
GATGATCATTGTAGCAATTA+TGG 0.238191 7_4:+51353832 Msa1161150:CDS
GCAATGATTTGTCTACAATT+TGG 0.240667 7_4:+51352100 Msa1161150:CDS
TTATCATCACTACCTTTCTT+TGG 0.252134 7_4:+51354662 Msa1161150:three_prime_UTR
ATTTGTGATTGCAGTGTTAT+TGG 0.259447 7_4:+51354293 Msa1161150:intron
ATCACGTAGAGTTGAGAAAT+TGG 0.280355 7_4:+51354604 Msa1161150:three_prime_UTR
TCTCTCTATCAGTAGTATTA+TGG 0.314109 7_4:-51352011 None:intergenic
TCATTATTGCCACCTTTGCT+TGG 0.320554 7_4:+51353121 Msa1161150:CDS
CCTGAAAACACTACTGATTC+TGG 0.323745 7_4:+51353066 Msa1161150:CDS
TAGGACTTTACTCAGTTCTA+TGG 0.324315 7_4:+51354333 Msa1161150:CDS
ATAACCGGGCCCACACTTAA+TGG 0.328176 7_4:-51354722 None:intergenic
GGAACTGTAATTACAGTTGC+TGG 0.333568 7_4:+51352961 Msa1161150:CDS
TAAGTTACATTATGGATAAC+CGG 0.335801 7_4:-51354737 None:intergenic
CATTATTGCCACCTTTGCTT+GGG 0.365039 7_4:+51353122 Msa1161150:CDS
CAACCAATGCTCCAAGCATT+TGG 0.368276 7_4:-51353367 None:intergenic
TGTAGAAAATGGAGTAATAT+TGG 0.373183 7_4:+51354418 Msa1161150:CDS
ATGAAGTGTTGTGTAGAAAA+TGG 0.377896 7_4:+51354407 Msa1161150:CDS
TAATAGCACATGAGTAGGTT+GGG 0.409987 7_4:-51352716 None:intergenic
TACCTTTCTTTGGAAAACTT+TGG 0.411135 7_4:+51354672 Msa1161150:three_prime_UTR
ATGATCATTGTAGCAATTAT+GGG 0.413953 7_4:+51353833 Msa1161150:CDS
AGACAAATCATTGCTATGTA+AGG 0.421535 7_4:-51352091 None:intergenic
CAGTTCCAATCACCTTTACT+TGG 0.422944 7_4:-51352945 None:intergenic
AAATGATATTGAAATGCAAA+AGG 0.427377 7_4:+51354469 Msa1161150:CDS
CACAGCTATAGTGTGTTCCT+TGG 0.437061 7_4:+51353300 Msa1161150:CDS
AAGCCAAATGCTTGGAGCAT+TGG 0.441831 7_4:+51353364 Msa1161150:CDS
AGATGCCAAGTAAAGGTGAT+TGG 0.445654 7_4:+51352940 Msa1161150:CDS
ATGTTCGTGTTGGGACTCCT+CGG 0.448412 7_4:+51352391 Msa1161150:CDS
GCCATGACAAATGTCATTGC+TGG 0.449617 7_4:-51352750 None:intergenic
AGGACTTTACTCAGTTCTAT+GGG 0.455974 7_4:+51354334 Msa1161150:CDS
GATCAGAACCTGTACTATGC+TGG 0.460553 7_4:+51352678 Msa1161150:CDS
TTGTCATTGGCAGGAAGATA+AGG 0.461420 7_4:+51352338 Msa1161150:intron
GGTCTTACCTACTATGTTCA+AGG 0.466312 7_4:+51353755 Msa1161150:CDS
CAAATGCTTGGAGCATTGGT+TGG 0.475581 7_4:+51353368 Msa1161150:CDS
CTCTCAAGAACAATAGCAAA+TGG 0.479507 7_4:-51352226 None:intergenic
AACATGAGAAATGTGATCCT+TGG 0.482972 7_4:-51352361 None:intergenic
AAATGCTTGGAGCATTGGTT+GGG 0.486794 7_4:+51353369 Msa1161150:CDS
TTCAAAAGGAAATTATATTG+AGG 0.488849 7_4:+51354780 Msa1161150:three_prime_UTR
GGGATAGTCATGCAAAAGAA+AGG 0.494971 7_4:+51353776 Msa1161150:CDS
CTAATAGCACATGAGTAGGT+TGG 0.498278 7_4:-51352717 None:intergenic
TGTTCGTGTTGGGACTCCTC+GGG 0.499429 7_4:+51352392 Msa1161150:CDS
CATTTGCTATTGTTCTTGAG+AGG 0.504801 7_4:+51352227 Msa1161150:CDS
GAACTGTAATTACAGTTGCT+GGG 0.505303 7_4:+51352962 Msa1161150:CDS
TCACGTAGAGTTGAGAAATT+GGG 0.508042 7_4:+51354605 Msa1161150:three_prime_UTR
ACAGCTATAGTGTGTTCCTT+GGG 0.509092 7_4:+51353301 Msa1161150:CDS
GAGCAGGGTATAATATCATC+AGG 0.517268 7_4:+51353734 Msa1161150:intron
AAAATTAAGATGCCAAGTAA+AGG 0.520767 7_4:+51352933 Msa1161150:CDS
TTTATGCAAATGTTCGTGTT+GGG 0.522841 7_4:+51352382 Msa1161150:CDS
AGGACCATTAAGTGTGGGCC+CGG 0.523031 7_4:+51354718 Msa1161150:three_prime_UTR
GAAAGGTAGTGATGATAATG+AGG 0.529638 7_4:-51354657 None:intergenic
ATTTCAACCCAGCATAGTAC+AGG 0.536100 7_4:-51352686 None:intergenic
AATGATATTGAAATGCAAAA+GGG 0.540111 7_4:+51354470 Msa1161150:CDS
GACTATCCCTTGAACATAGT+AGG 0.543020 7_4:-51353762 None:intergenic
GGATAGTCATGCAAAAGAAA+GGG 0.545870 7_4:+51353777 Msa1161150:CDS
AAATTCAGGCTGTGACATTG+AGG 0.548667 7_4:+51353254 Msa1161150:intron
GTTTATGCAAATGTTCGTGT+TGG 0.553244 7_4:+51352381 Msa1161150:CDS
CCCAGCAATGACATTTGTCA+TGG 0.557417 7_4:+51352749 Msa1161150:CDS
TGATTAGGACCATTAAGTGT+GGG 0.561450 7_4:+51354713 Msa1161150:three_prime_UTR
GATGATAATGAGGATGAAGA+AGG 0.563760 7_4:-51354647 None:intergenic
TGGAGCATAAGCCAAATGCT+TGG 0.566635 7_4:+51353356 Msa1161150:CDS
AATTACAGTTGCTGGGGCCA+TGG 0.571553 7_4:+51352969 Msa1161150:CDS
ATCAGAACCTGTACTATGCT+GGG 0.575296 7_4:+51352679 Msa1161150:CDS
ATATTGGAAACAGTGATTGA+AGG 0.577888 7_4:+51354434 Msa1161150:CDS
GAAAGAAGCCCAAGCAAAGG+TGG 0.577910 7_4:-51353130 None:intergenic
AAGCAAAGGTGGCAATAATG+AGG 0.583286 7_4:-51353119 None:intergenic
TAGAGTTGAGAAATTGGGAG+GGG 0.583687 7_4:+51354610 Msa1161150:three_prime_UTR
TACAGGTTCTGATCAATCAC+AGG 0.587319 7_4:-51352669 None:intergenic
AATTGATTGAAGTGTGCCCA+AGG 0.589839 7_4:-51353317 None:intergenic
TGAAGAAGAGACAATATCTG+AGG 0.594058 7_4:+51354382 Msa1161150:CDS
AATAGCACATGAGTAGGTTG+GGG 0.594825 7_4:-51352715 None:intergenic
ATTGCTAATAGCACATGAGT+AGG 0.596686 7_4:-51352721 None:intergenic
AACTGTAATTACAGTTGCTG+GGG 0.596912 7_4:+51352963 Msa1161150:CDS
GCTACAATGATCATCATCAA+AGG 0.605705 7_4:-51353824 None:intergenic
AAGTTACATTATGGATAACC+GGG 0.607834 7_4:-51354736 None:intergenic
CCATGACAAATGTCATTGCT+GGG 0.609642 7_4:-51352749 None:intergenic
TGGTATGAACATAATAACAA+AGG 0.615728 7_4:+51352129 Msa1161150:CDS
GTCTTACCTACTATGTTCAA+GGG 0.621110 7_4:+51353756 Msa1161150:CDS
TTGATTAGGACCATTAAGTG+TGG 0.624939 7_4:+51354712 Msa1161150:three_prime_UTR
CGTAGAGTTGAGAAATTGGG+AGG 0.627084 7_4:+51354608 Msa1161150:three_prime_UTR
GAAGAAGAGACAATATCTGA+GGG 0.629287 7_4:+51354383 Msa1161150:CDS
GAAGAAAGAAGCCCAAGCAA+AGG 0.631452 7_4:-51353133 None:intergenic
TAATACTACTGATAGAGAGA+AGG 0.633010 7_4:+51352014 Msa1161150:five_prime_UTR
GAACATAGTGACTCATTCCA+CGG 0.650720 7_4:-51352162 None:intergenic
TTGGCAGGAAGATAAGGCCA+AGG 0.651054 7_4:+51352344 Msa1161150:intron
AGAAACAGAGTTGTATACAG+AGG 0.655104 7_4:-51351974 None:intergenic
GTAGAGTTGAGAAATTGGGA+GGG 0.658226 7_4:+51354609 Msa1161150:three_prime_UTR
TTTGTATAATGTCATCACCA+TGG 0.663821 7_4:-51352986 None:intergenic
GGACTTTACTCAGTTCTATG+GGG 0.681459 7_4:+51354335 Msa1161150:CDS
ACAAAGGTTTCACTCAACCG+TGG 0.684285 7_4:+51352145 Msa1161150:CDS
ATGGTGATGACATTATACAA+AGG 0.703249 7_4:+51352988 Msa1161150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACATAAAAAGAATATAA+AGG - chr7_4:51352851-51352870 None:intergenic 10.0%
!!! TTTATATTCTTTTTATGTTT+TGG + chr7_4:51352850-51352869 Msa1161150:intron 10.0%
!!! AATTTAAAACTTTGATAAAA+GGG - chr7_4:51353435-51353454 None:intergenic 10.0%
!! AAAAACTTTATTATATAACA+TGG - chr7_4:51353901-51353920 None:intergenic 10.0%
!!! AAAATAATAAAGCATTTAAA+AGG + chr7_4:51354192-51354211 Msa1161150:intron 10.0%
!! TTAAATATGTAGATATTATT+AGG + chr7_4:51354541-51354560 Msa1161150:exon 10.0%
!! AATTTAATTAAGTTACATTA+TGG - chr7_4:51354748-51354767 None:intergenic 10.0%
!!! AACAAATTTTAGAACATTTT+TGG - chr7_4:51352634-51352653 None:intergenic 15.0%
!!! AATTTGTTATTGTTTCTATT+AGG + chr7_4:51352646-51352665 Msa1161150:intron 15.0%
!! TAAAAAGAATATAAAGGAAA+AGG - chr7_4:51352845-51352864 None:intergenic 15.0%
!!! ATTTAAAACTTTGATAAAAG+GGG - chr7_4:51353434-51353453 None:intergenic 15.0%
!!! CAATTTAAAACTTTGATAAA+AGG - chr7_4:51353436-51353455 None:intergenic 15.0%
!!! ATTTATCTCCATTATAATTT+TGG + chr7_4:51353947-51353966 Msa1161150:intron 15.0%
!!! TTTATCTCCATTATAATTTT+GGG + chr7_4:51353948-51353967 Msa1161150:intron 15.0%
!!! TCATAAAAAAGCATATATAT+AGG + chr7_4:51354226-51354245 Msa1161150:intron 15.0%
!!! TATCTACATATTTAAACTTT+TGG - chr7_4:51354536-51354555 None:intergenic 15.0%
!! TTGTTCAAATATTAAGCTAA+TGG - chr7_4:51352296-51352315 None:intergenic 20.0%
!! AATTGTTCAATCTTAATCAA+TGG + chr7_4:51352550-51352569 Msa1161150:intron 20.0%
!! TGGTATTAAAAGATTTAACT+TGG + chr7_4:51352870-51352889 Msa1161150:intron 20.0%
!!! AAGATTTAACTTGGTTTATT+TGG + chr7_4:51352879-51352898 Msa1161150:intron 20.0%
!!! TGGTTTATTTGGAATAAATT+AGG + chr7_4:51352890-51352909 Msa1161150:intron 20.0%
!!! TTATTTGGAATAAATTAGGA+TGG + chr7_4:51352894-51352913 Msa1161150:intron 20.0%
!!! TCTATTTTGTGATTAAATTC+AGG + chr7_4:51353240-51353259 Msa1161150:intron 20.0%
!!! TTTAAAACTTTGATAAAAGG+GGG - chr7_4:51353433-51353452 None:intergenic 20.0%
!! AAAAAAAAAACAATATGTCG+CGG + chr7_4:51353621-51353640 Msa1161150:intron 20.0%
!! ATCAACAAGCATAAAAAATA+GGG - chr7_4:51353677-51353696 None:intergenic 20.0%
!!! TTTTATTTTTGTAATGGAAG+TGG + chr7_4:51353923-51353942 Msa1161150:intron 20.0%
!!! TTATCTCCATTATAATTTTG+GGG + chr7_4:51353949-51353968 Msa1161150:intron 20.0%
!!! TTTTTTCCCCAAAATTATAA+TGG - chr7_4:51353958-51353977 None:intergenic 20.0%
!!! ATAATTTTGGGGAAAAAAAT+TGG + chr7_4:51353960-51353979 Msa1161150:intron 20.0%
!!! CAAGGTTTTAATTTTATTTG+TGG - chr7_4:51354065-51354084 None:intergenic 20.0%
!!! AAAAAGCATATATATAGGAA+CGG + chr7_4:51354231-51354250 Msa1161150:intron 20.0%
!! AAATGATATTGAAATGCAAA+AGG + chr7_4:51354469-51354488 Msa1161150:CDS 20.0%
!! AATGATATTGAAATGCAAAA+GGG + chr7_4:51354470-51354489 Msa1161150:CDS 20.0%
!! TTCAAAAGGAAATTATATTG+AGG + chr7_4:51354780-51354799 Msa1161150:three_prime_UTR 20.0%
! AGAGAGAAGGAAAAAAAAAA+TGG + chr7_4:51352027-51352046 Msa1161150:exon 25.0%
! AGAAGGAAAAAAAAAATGGA+AGG + chr7_4:51352031-51352050 Msa1161150:exon 25.0%
! AAAAAAAAATGGAAGGAGAT+AGG + chr7_4:51352038-51352057 Msa1161150:exon 25.0%
! TGGTATGAACATAATAACAA+AGG + chr7_4:51352129-51352148 Msa1161150:CDS 25.0%
! ATCATTAGATCGATATTGAA+CGG + chr7_4:51352501-51352520 Msa1161150:intron 25.0%
! ATAAATTAGGATGGAGAAAT+TGG + chr7_4:51352903-51352922 Msa1161150:intron 25.0%
! AAAATTAAGATGCCAAGTAA+AGG + chr7_4:51352933-51352952 Msa1161150:CDS 25.0%
!!! TTTTCAGGTTCATAATTTCT+AGG - chr7_4:51353054-51353073 None:intergenic 25.0%
! TTAAAACTTTGATAAAAGGG+GGG - chr7_4:51353432-51353451 None:intergenic 25.0%
! CTCGTCACTAAATTTATTAA+CGG + chr7_4:51353522-51353541 Msa1161150:intron 25.0%
!!! GAGTTTTTTTAGTAGTGTAA+TGG + chr7_4:51353577-51353596 Msa1161150:intron 25.0%
!!! TTTTTAGTAGTGTAATGGTT+TGG + chr7_4:51353582-51353601 Msa1161150:intron 25.0%
! CATCAACAAGCATAAAAAAT+AGG - chr7_4:51353678-51353697 None:intergenic 25.0%
!! GTATTAATGGATGTAAACTT+TGG + chr7_4:51353710-51353729 Msa1161150:intron 25.0%
! ATGATCATTGTAGCAATTAT+GGG + chr7_4:51353833-51353852 Msa1161150:CDS 25.0%
!!! CAAGATATAATTTTTCAGCA+AGG - chr7_4:51353868-51353887 None:intergenic 25.0%
! CTTGCTGAAAAATTATATCT+TGG + chr7_4:51353866-51353885 Msa1161150:CDS 25.0%
! CTGAAAAATTATATCTTGGA+GGG + chr7_4:51353870-51353889 Msa1161150:CDS 25.0%
! AACTTTAATATTGCATCACA+AGG + chr7_4:51354036-51354055 Msa1161150:intron 25.0%
! ACTTTAATATTGCATCACAA+GGG + chr7_4:51354037-51354056 Msa1161150:intron 25.0%
! TGTAGAAAATGGAGTAATAT+TGG + chr7_4:51354418-51354437 Msa1161150:CDS 25.0%
!!! AAACTTTGGTAAAGCATTTT+TGG + chr7_4:51354686-51354705 Msa1161150:three_prime_UTR 25.0%
! TAAGTTACATTATGGATAAC+CGG - chr7_4:51354740-51354759 None:intergenic 25.0%
TCTCTCTATCAGTAGTATTA+TGG - chr7_4:51352014-51352033 None:intergenic 30.0%
TAATACTACTGATAGAGAGA+AGG + chr7_4:51352014-51352033 Msa1161150:five_prime_UTR 30.0%
AGACAAATCATTGCTATGTA+AGG - chr7_4:51352094-51352113 None:intergenic 30.0%
! GCAATGATTTGTCTACAATT+TGG + chr7_4:51352100-51352119 Msa1161150:CDS 30.0%
TCCATCATTCATTCTTAATG+TGG + chr7_4:51352252-51352271 Msa1161150:intron 30.0%
TCCACATTAAGAATGAATGA+TGG - chr7_4:51352256-51352275 None:intergenic 30.0%
! CACACTTTATTTCTTGTCAT+TGG + chr7_4:51352325-51352344 Msa1161150:intron 30.0%
TTTATGCAAATGTTCGTGTT+GGG + chr7_4:51352382-51352401 Msa1161150:CDS 30.0%
GATTTAGATGACATGATTGT+AGG - chr7_4:51352484-51352503 None:intergenic 30.0%
TTTGTATAATGTCATCACCA+TGG - chr7_4:51352989-51353008 None:intergenic 30.0%
! ATGGTGATGACATTATACAA+AGG + chr7_4:51352988-51353007 Msa1161150:CDS 30.0%
TGATTCTGGTGAAAAAGATT+GGG + chr7_4:51353080-51353099 Msa1161150:CDS 30.0%
! AATTGCTGTGACTTTTGTTA+TGG + chr7_4:51353336-51353355 Msa1161150:CDS 30.0%
! CTTGTTGATGAATTTATCGA+GGG + chr7_4:51353688-51353707 Msa1161150:intron 30.0%
!! GAATTTATCGAGGGTATTAA+TGG + chr7_4:51353697-51353716 Msa1161150:intron 30.0%
GATGATCATTGTAGCAATTA+TGG + chr7_4:51353832-51353851 Msa1161150:CDS 30.0%
GCTGAAAAATTATATCTTGG+AGG + chr7_4:51353869-51353888 Msa1161150:CDS 30.0%
TCACATCGCAATTATAATTG+TGG - chr7_4:51354007-51354026 None:intergenic 30.0%
CTTTAATATTGCATCACAAG+GGG + chr7_4:51354038-51354057 Msa1161150:intron 30.0%
TTGATATGTTCACAGTTCAT+TGG - chr7_4:51354094-51354113 None:intergenic 30.0%
ATTTGTGATTGCAGTGTTAT+TGG + chr7_4:51354293-51354312 Msa1161150:intron 30.0%
!! ATGAAGTGTTGTGTAGAAAA+TGG + chr7_4:51354407-51354426 Msa1161150:CDS 30.0%
ATATTGGAAACAGTGATTGA+AGG + chr7_4:51354434-51354453 Msa1161150:CDS 30.0%
!! TGAAGCTACTAAAGTTTTGA+GGG + chr7_4:51354493-51354512 Msa1161150:CDS 30.0%
TTATCATCACTACCTTTCTT+TGG + chr7_4:51354662-51354681 Msa1161150:three_prime_UTR 30.0%
! TACCTTTCTTTGGAAAACTT+TGG + chr7_4:51354672-51354691 Msa1161150:three_prime_UTR 30.0%
! TACCAAAGTTTTCCAAAGAA+AGG - chr7_4:51354677-51354696 None:intergenic 30.0%
AAGTTACATTATGGATAACC+GGG - chr7_4:51354739-51354758 None:intergenic 30.0%
! TTTTGCAGACTTTGTTCAAA+AGG + chr7_4:51354766-51354785 Msa1161150:three_prime_UTR 30.0%
AGAAACAGAGTTGTATACAG+AGG - chr7_4:51351977-51351996 None:intergenic 35.0%
!!! TGTCTACAATTTGGTTTTGC+TGG + chr7_4:51352109-51352128 Msa1161150:CDS 35.0%
CTCTCAAGAACAATAGCAAA+TGG - chr7_4:51352229-51352248 None:intergenic 35.0%
!! CATTTGCTATTGTTCTTGAG+AGG + chr7_4:51352227-51352246 Msa1161150:CDS 35.0%
! CTTTATTTCTTGTCATTGGC+AGG + chr7_4:51352329-51352348 Msa1161150:intron 35.0%
AACATGAGAAATGTGATCCT+TGG - chr7_4:51352364-51352383 None:intergenic 35.0%
GTTTATGCAAATGTTCGTGT+TGG + chr7_4:51352381-51352400 Msa1161150:CDS 35.0%
TAATAGCACATGAGTAGGTT+GGG - chr7_4:51352719-51352738 None:intergenic 35.0%
ATTGCTAATAGCACATGAGT+AGG - chr7_4:51352724-51352743 None:intergenic 35.0%
!! TTGTCATGGCAGTTATTTTC+AGG + chr7_4:51352763-51352782 Msa1161150:CDS 35.0%
GAACTGTAATTACAGTTGCT+GGG + chr7_4:51352962-51352981 Msa1161150:CDS 35.0%
AACTGTAATTACAGTTGCTG+GGG + chr7_4:51352963-51352982 Msa1161150:CDS 35.0%
CTGATTCTGGTGAAAAAGAT+TGG + chr7_4:51353079-51353098 Msa1161150:CDS 35.0%
GGTGAAAAAGATTGGGTTAA+AGG + chr7_4:51353087-51353106 Msa1161150:CDS 35.0%
! AGAAATATCGACTGTGATCT+TGG - chr7_4:51353647-51353666 None:intergenic 35.0%
! GCTTGTTGATGAATTTATCG+AGG + chr7_4:51353687-51353706 Msa1161150:intron 35.0%
GTCTTACCTACTATGTTCAA+GGG + chr7_4:51353756-51353775 Msa1161150:CDS 35.0%
GGATAGTCATGCAAAAGAAA+GGG + chr7_4:51353777-51353796 Msa1161150:CDS 35.0%
GCTACAATGATCATCATCAA+AGG - chr7_4:51353827-51353846 None:intergenic 35.0%
ACAGTTCATTGGATTGAACA+AGG - chr7_4:51354083-51354102 None:intergenic 35.0%
AAGCATATATATAGGAACGG+TGG + chr7_4:51354234-51354253 Msa1161150:intron 35.0%
!!! GGAGCTATTTTGATCGTAAT+AGG + chr7_4:51354314-51354333 Msa1161150:CDS 35.0%
TAGGACTTTACTCAGTTCTA+TGG + chr7_4:51354333-51354352 Msa1161150:CDS 35.0%
AGGACTTTACTCAGTTCTAT+GGG + chr7_4:51354334-51354353 Msa1161150:CDS 35.0%
TGAAGAAGAGACAATATCTG+AGG + chr7_4:51354382-51354401 Msa1161150:CDS 35.0%
GAAGAAGAGACAATATCTGA+GGG + chr7_4:51354383-51354402 Msa1161150:CDS 35.0%
! GTGAAGCTACTAAAGTTTTG+AGG + chr7_4:51354492-51354511 Msa1161150:CDS 35.0%
ATCACGTAGAGTTGAGAAAT+TGG + chr7_4:51354604-51354623 Msa1161150:three_prime_UTR 35.0%
TCACGTAGAGTTGAGAAATT+GGG + chr7_4:51354605-51354624 Msa1161150:three_prime_UTR 35.0%
! GATGATAATGAGGATGAAGA+AGG - chr7_4:51354650-51354669 None:intergenic 35.0%
! GAAAGGTAGTGATGATAATG+AGG - chr7_4:51354660-51354679 None:intergenic 35.0%
!! CTTTGGTAAAGCATTTTTGG+TGG + chr7_4:51354689-51354708 Msa1161150:three_prime_UTR 35.0%
!!! AGCATTTTTGGTGGTTGATT+AGG + chr7_4:51354698-51354717 Msa1161150:three_prime_UTR 35.0%
TTGATTAGGACCATTAAGTG+TGG + chr7_4:51354712-51354731 Msa1161150:three_prime_UTR 35.0%
TGATTAGGACCATTAAGTGT+GGG + chr7_4:51354713-51354732 Msa1161150:three_prime_UTR 35.0%
GAACATAGTGACTCATTCCA+CGG - chr7_4:51352165-51352184 None:intergenic 40.0%
TTGTCATTGGCAGGAAGATA+AGG + chr7_4:51352338-51352357 Msa1161150:intron 40.0%
! TACAGGTTCTGATCAATCAC+AGG - chr7_4:51352672-51352691 None:intergenic 40.0%
ATCAGAACCTGTACTATGCT+GGG + chr7_4:51352679-51352698 Msa1161150:CDS 40.0%
ATTTCAACCCAGCATAGTAC+AGG - chr7_4:51352689-51352708 None:intergenic 40.0%
AATAGCACATGAGTAGGTTG+GGG - chr7_4:51352718-51352737 None:intergenic 40.0%
CTAATAGCACATGAGTAGGT+TGG - chr7_4:51352720-51352739 None:intergenic 40.0%
CCATGACAAATGTCATTGCT+GGG - chr7_4:51352752-51352771 None:intergenic 40.0%
AGATGCCAAGTAAAGGTGAT+TGG + chr7_4:51352940-51352959 Msa1161150:CDS 40.0%
CAGTTCCAATCACCTTTACT+TGG - chr7_4:51352948-51352967 None:intergenic 40.0%
GGAACTGTAATTACAGTTGC+TGG + chr7_4:51352961-51352980 Msa1161150:CDS 40.0%
! CCAGAATCAGTAGTGTTTTC+AGG - chr7_4:51353069-51353088 None:intergenic 40.0%
!! CCTGAAAACACTACTGATTC+TGG + chr7_4:51353066-51353085 Msa1161150:CDS 40.0%
AAGCAAAGGTGGCAATAATG+AGG - chr7_4:51353122-51353141 None:intergenic 40.0%
TCATTATTGCCACCTTTGCT+TGG + chr7_4:51353121-51353140 Msa1161150:CDS 40.0%
CATTATTGCCACCTTTGCTT+GGG + chr7_4:51353122-51353141 Msa1161150:CDS 40.0%
GGCTTCTTTCTTCATTCTTC+AGG + chr7_4:51353143-51353162 Msa1161150:CDS 40.0%
AAATTCAGGCTGTGACATTG+AGG + chr7_4:51353254-51353273 Msa1161150:intron 40.0%
ACAGCTATAGTGTGTTCCTT+GGG + chr7_4:51353301-51353320 Msa1161150:CDS 40.0%
AATTGATTGAAGTGTGCCCA+AGG - chr7_4:51353320-51353339 None:intergenic 40.0%
!! AAATGCTTGGAGCATTGGTT+GGG + chr7_4:51353369-51353388 Msa1161150:CDS 40.0%
!! GTAGTGTAATGGTTTGGTTC+TGG + chr7_4:51353588-51353607 Msa1161150:intron 40.0%
GATGTAAACTTTGGTGAGCA+GGG + chr7_4:51353719-51353738 Msa1161150:intron 40.0%
GAGCAGGGTATAATATCATC+AGG + chr7_4:51353734-51353753 Msa1161150:intron 40.0%
GGTCTTACCTACTATGTTCA+AGG + chr7_4:51353755-51353774 Msa1161150:CDS 40.0%
GACTATCCCTTGAACATAGT+AGG - chr7_4:51353765-51353784 None:intergenic 40.0%
GGGATAGTCATGCAAAAGAA+AGG + chr7_4:51353776-51353795 Msa1161150:CDS 40.0%
CTGAAAGCAGTGACAAAAAC+TGG - chr7_4:51353803-51353822 None:intergenic 40.0%
AGGAACGGTGGTAAACAATT+TGG + chr7_4:51354246-51354265 Msa1161150:intron 40.0%
GGACTTTACTCAGTTCTATG+GGG + chr7_4:51354335-51354354 Msa1161150:CDS 40.0%
GTAGAGTTGAGAAATTGGGA+GGG + chr7_4:51354609-51354628 Msa1161150:three_prime_UTR 40.0%
TAGAGTTGAGAAATTGGGAG+GGG + chr7_4:51354610-51354629 Msa1161150:three_prime_UTR 40.0%
ACAAAGGTTTCACTCAACCG+TGG + chr7_4:51352145-51352164 Msa1161150:CDS 45.0%
!! GTCAGAAAAGTACTAACCCG+AGG - chr7_4:51352411-51352430 None:intergenic 45.0%
GATCAGAACCTGTACTATGC+TGG + chr7_4:51352678-51352697 Msa1161150:CDS 45.0%
CCCAGCAATGACATTTGTCA+TGG + chr7_4:51352749-51352768 Msa1161150:CDS 45.0%
GCCATGACAAATGTCATTGC+TGG - chr7_4:51352753-51352772 None:intergenic 45.0%
GAAGAAAGAAGCCCAAGCAA+AGG - chr7_4:51353136-51353155 None:intergenic 45.0%
CACAGCTATAGTGTGTTCCT+TGG + chr7_4:51353300-51353319 Msa1161150:CDS 45.0%
TGGAGCATAAGCCAAATGCT+TGG + chr7_4:51353356-51353375 Msa1161150:CDS 45.0%
AAGCCAAATGCTTGGAGCAT+TGG + chr7_4:51353364-51353383 Msa1161150:CDS 45.0%
CAACCAATGCTCCAAGCATT+TGG - chr7_4:51353370-51353389 None:intergenic 45.0%
!! CAAATGCTTGGAGCATTGGT+TGG + chr7_4:51353368-51353387 Msa1161150:CDS 45.0%
!! GTGTAATGGTTTGGTTCTGG+TGG + chr7_4:51353591-51353610 Msa1161150:intron 45.0%
GGATGTAAACTTTGGTGAGC+AGG + chr7_4:51353718-51353737 Msa1161150:intron 45.0%
CGTAGAGTTGAGAAATTGGG+AGG + chr7_4:51354608-51354627 Msa1161150:three_prime_UTR 45.0%
!! TTATAAATTAATTAAGAAAT+TGG + chr7_4:51353177-51353196 Msa1161150:intron 5.0%
!!! TTTTTATTTTATTTTTGTAA+TGG + chr7_4:51353917-51353936 Msa1161150:intron 5.0%
TTGGCAGGAAGATAAGGCCA+AGG + chr7_4:51352344-51352363 Msa1161150:intron 50.0%
ATGTTCGTGTTGGGACTCCT+CGG + chr7_4:51352391-51352410 Msa1161150:CDS 50.0%
AATTACAGTTGCTGGGGCCA+TGG + chr7_4:51352969-51352988 Msa1161150:CDS 50.0%
GAAAGAAGCCCAAGCAAAGG+TGG - chr7_4:51353133-51353152 None:intergenic 50.0%
ATAACCGGGCCCACACTTAA+TGG - chr7_4:51354725-51354744 None:intergenic 50.0%
TGTTCGTGTTGGGACTCCTC+GGG + chr7_4:51352392-51352411 Msa1161150:CDS 55.0%
AGGGGGGAGACTTACAGCAT+AGG - chr7_4:51353416-51353435 None:intergenic 55.0%
AGGACCATTAAGTGTGGGCC+CGG + chr7_4:51354718-51354737 Msa1161150:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 51351942 51354811 51351942 ID=Msa1161150;Name=Msa1161150
chr7_4 mRNA 51351942 51354811 51351942 ID=Msa1161150-mRNA-1;Parent=Msa1161150;Name=Msa1161150-mRNA-1;_AED=0.14;_eAED=0.14;_QI=104|1|1|1|1|1|7|267|394
chr7_4 exon 51351942 51352248 51351942 ID=Msa1161150-mRNA-1:exon:14468;Parent=Msa1161150-mRNA-1
chr7_4 exon 51352351 51352413 51352351 ID=Msa1161150-mRNA-1:exon:14469;Parent=Msa1161150-mRNA-1
chr7_4 exon 51352668 51352784 51352668 ID=Msa1161150-mRNA-1:exon:14470;Parent=Msa1161150-mRNA-1
chr7_4 exon 51352912 51353164 51352912 ID=Msa1161150-mRNA-1:exon:14471;Parent=Msa1161150-mRNA-1
chr7_4 exon 51353262 51353420 51353262 ID=Msa1161150-mRNA-1:exon:14472;Parent=Msa1161150-mRNA-1
chr7_4 exon 51353740 51353891 51353740 ID=Msa1161150-mRNA-1:exon:14473;Parent=Msa1161150-mRNA-1
chr7_4 exon 51354307 51354811 51354307 ID=Msa1161150-mRNA-1:exon:14474;Parent=Msa1161150-mRNA-1
chr7_4 five_prime_UTR 51351942 51352045 51351942 ID=Msa1161150-mRNA-1:five_prime_utr;Parent=Msa1161150-mRNA-1
chr7_4 CDS 51352046 51352248 51352046 ID=Msa1161150-mRNA-1:cds;Parent=Msa1161150-mRNA-1
chr7_4 CDS 51352351 51352413 51352351 ID=Msa1161150-mRNA-1:cds;Parent=Msa1161150-mRNA-1
chr7_4 CDS 51352668 51352784 51352668 ID=Msa1161150-mRNA-1:cds;Parent=Msa1161150-mRNA-1
chr7_4 CDS 51352912 51353164 51352912 ID=Msa1161150-mRNA-1:cds;Parent=Msa1161150-mRNA-1
chr7_4 CDS 51353262 51353420 51353262 ID=Msa1161150-mRNA-1:cds;Parent=Msa1161150-mRNA-1
chr7_4 CDS 51353740 51353891 51353740 ID=Msa1161150-mRNA-1:cds;Parent=Msa1161150-mRNA-1
chr7_4 CDS 51354307 51354544 51354307 ID=Msa1161150-mRNA-1:cds;Parent=Msa1161150-mRNA-1
chr7_4 three_prime_UTR 51354545 51354811 51354545 ID=Msa1161150-mRNA-1:three_prime_utr;Parent=Msa1161150-mRNA-1
Gene Sequence

>Msa1161150

ATGGAAGGAGATAGGTGTAGTACAAGTTTTTTTCAAAGATGCAAGCCTTACATAGCAATGATTTGTCTACAATTTGGTTTTGCTGGTATGAACATAATAACAAAGGTTTCACTCAACCGTGGAATGAGTCACTATGTTCTTGTTGTTTATAGACATGCTTTTGCTACTGCTGTTATTGCTCCATTTGCTATTGTTCTTGAGAGGAAGATAAGGCCAAGGATCACATTTCTCATGTTTATGCAAATGTTCGTGTTGGGACTCCTCGGGCCTGTGATTGATCAGAACCTGTACTATGCTGGGTTGAAATTCACTTCCCCAACCTACTCATGTGCTATTAGCAATATTCTCCCAGCAATGACATTTGTCATGGCAGTTATTTTCAGGATGGAGAAATTGGACTTGAAAAAATTAAGATGCCAAGTAAAGGTGATTGGAACTGTAATTACAGTTGCTGGGGCCATGGTGATGACATTATACAAAGGACAAGTTATTAATATATTGAGTTCTCAATACATGCATCATCCTAGAAATTATGAACCTGAAAACACTACTGATTCTGGTGAAAAAGATTGGGTTAAAGGTTCTATTCTCCTCATTATTGCCACCTTTGCTTGGGCTTCTTTCTTCATTCTTCAGGCTGTGACATTGAGGAAATACTCAGCTCAACTCTCACTCACAGCTATAGTGTGTTCCTTGGGCACACTTCAATCAATTGCTGTGACTTTTGTTATGGAGCATAAGCCAAATGCTTGGAGCATTGGTTGGGACATGAACTTATTAGCTGCAGCCTATGCTGGTATAATATCATCAGGTCTTACCTACTATGTTCAAGGGATAGTCATGCAAAAGAAAGGGCCAGTTTTTGTCACTGCTTTCAGTCCTTTGATGATGATCATTGTAGCAATTATGGGCACTTTCATCCTTGCTGAAAAATTATATCTTGGAGGTGTTATTGGAGCTATTTTGATCGTAATAGGACTTTACTCAGTTCTATGGGGCAAAAGCAAAGAAAATAAAGAGATTGAAGAAGAGACAATATCTGAGGGAATGAAGTGTTGTGTAGAAAATGGAGTAATATTGGAAACAGTGATTGAAGGTGTTGAAGAAACAAATGATATTGAAATGCAAAAGGGTGAAGCTACTAAAGTTTTGAGGGTAGCAATTATTAGTGTTCCAAAAGTTTAA
Protein sequence

>Msa1161150

MEGDRCSTSFFQRCKPYIAMICLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNILPAMTFVMAVIFRMEKLDLKKLRCQVKVIGTVITVAGAMVMTLYKGQVINILSSQYMHHPRNYEPENTTDSGEKDWVKGSILLIIATFAWASFFILQAVTLRKYSAQLSLTAIVCSLGTLQSIAVTFVMEHKPNAWSIGWDMNLLAAAYAGIISSGLTYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGTFILAEKLYLGGVIGAILIVIGLYSVLWGKSKENKEIEEETISEGMKCCVENGVILETVIEGVEETNDIEMQKGEATKVLRVAIISVPKV*