AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1033150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033150 MtrunA17_Chr7g0255561 97.716 394 8 1 1 394 1 393 0.0 788
Msa1033150 MtrunA17_Chr7g0255581 97.716 394 8 1 1 394 1 393 0.0 788
Msa1033150 MtrunA17_Chr8g0354121 63.978 372 124 5 11 373 9 379 2.19e-171 484
Msa1033150 MtrunA17_Chr3g0081511 58.824 391 152 5 2 388 4 389 4.50e-163 463
Msa1033150 MtrunA17_Chr3g0081421 57.881 387 154 4 1 381 3 386 7.62e-161 457
Msa1033150 MtrunA17_Chr1g0160171 50.843 356 169 2 4 357 3 354 3.27e-127 371
Msa1033150 MtrunA17_Chr7g0263101 52.853 333 152 2 6 337 4 332 4.94e-125 365
Msa1033150 MtrunA17_Chr3g0114691 47.165 388 195 6 2 383 7 390 1.22e-124 365
Msa1033150 MtrunA17_Chr1g0182291 49.859 355 167 4 7 356 7 355 3.79e-122 358
Msa1033150 MtrunA17_Chr3g0114731 47.904 334 168 1 11 344 14 341 1.17e-112 335
Msa1033150 MtrunA17_Chr1g0160181 47.337 338 175 2 8 344 11 346 8.68e-111 330
Msa1033150 MtrunA17_Chr3g0114711 41.598 363 170 4 12 337 11 368 1.96e-104 314
Msa1033150 MtrunA17_Chr3g0114701 46.084 332 176 2 9 339 3 332 2.50e-100 303
Msa1033150 MtrunA17_Chr1g0186601 43.027 337 182 5 11 345 12 340 4.09e-94 286
Msa1033150 MtrunA17_Chr1g0171301 42.045 352 197 4 6 356 7 352 2.25e-93 284
Msa1033150 MtrunA17_Chr1g0186611 42.262 336 186 3 11 345 12 340 5.88e-90 275
Msa1033150 MtrunA17_Chr1g0186571 42.388 335 185 3 12 345 10 337 2.86e-89 273
Msa1033150 MtrunA17_Chr1g0186641 42.683 328 181 3 12 338 10 331 3.18e-89 273
Msa1033150 MtrunA17_Chr1g0186561 42.857 336 185 3 11 345 12 341 2.00e-88 271
Msa1033150 MtrunA17_Chr7g0271561 39.237 367 216 4 16 377 8 372 4.56e-87 269
Msa1033150 MtrunA17_Chr6g0463971 36.901 355 217 4 12 365 13 361 1.97e-85 264
Msa1033150 MtrunA17_Chr3g0142131 39.368 348 202 1 5 343 10 357 1.93e-81 254
Msa1033150 MtrunA17_Chr2g0278561 38.261 345 206 3 1 343 3 342 6.32e-80 251
Msa1033150 MtrunA17_Chr4g0059311 37.462 331 202 2 10 339 6 332 9.94e-80 249
Msa1033150 MtrunA17_Chr1g0184221 34.957 349 205 2 11 345 12 352 1.30e-79 249
Msa1033150 MtrunA17_Chr2g0278541 38.209 335 199 3 15 343 12 344 3.50e-79 249
Msa1033150 MtrunA17_Chr2g0290611 38.529 340 201 3 12 348 9 343 4.68e-79 248
Msa1033150 MtrunA17_Chr1g0155761 38.329 347 200 2 12 344 18 364 2.13e-78 247
Msa1033150 MtrunA17_Chr2g0278551 38.053 339 204 2 15 351 12 346 3.29e-75 239
Msa1033150 MtrunA17_Chr4g0050881 38.253 332 200 4 15 344 9 337 3.68e-75 237
Msa1033150 MtrunA17_Chr3g0129571 34.286 350 215 2 16 350 8 357 8.83e-75 236
Msa1033150 MtrunA17_Chr6g0483401 37.500 336 210 0 24 359 19 354 1.63e-74 236
Msa1033150 MtrunA17_Chr3g0129601 33.724 341 213 2 15 349 29 362 9.23e-73 231
Msa1033150 MtrunA17_Chr2g0284261 36.778 329 202 3 12 340 5 327 1.96e-72 230
Msa1033150 MtrunA17_Chr8g0334761 35.695 367 223 3 16 377 11 369 1.06e-71 229
Msa1033150 MtrunA17_Chr4g0051021 35.942 345 213 4 12 352 11 351 6.98e-71 227
Msa1033150 MtrunA17_Chr4g0050891 37.500 328 194 3 11 332 9 331 1.45e-70 226
Msa1033150 MtrunA17_Chr1g0160111 34.247 365 214 4 24 377 16 365 2.31e-70 225
Msa1033150 MtrunA17_Chr2g0332001 36.202 337 209 3 10 345 33 364 1.37e-69 224
Msa1033150 MtrunA17_Chr4g0050941 37.240 384 227 7 11 388 8 383 3.55e-69 223
Msa1033150 MtrunA17_Chr1g0177221 43.254 252 137 2 15 265 18 264 4.04e-69 219
Msa1033150 MtrunA17_Chr1g0164831 35.000 340 210 4 15 351 3 334 5.42e-68 218
Msa1033150 MtrunA17_Chr3g0129591 34.104 346 220 3 16 356 6 348 1.87e-66 215
Msa1033150 MtrunA17_Chr8g0334751 37.101 345 204 4 16 355 12 348 4.02e-64 209
Msa1033150 MtrunA17_Chr8g0383731 33.535 331 214 2 12 338 2 330 3.04e-63 206
Msa1033150 MtrunA17_Chr8g0334771 35.417 336 202 3 16 345 11 337 3.63e-62 204
Msa1033150 MtrunA17_Chr3g0129581 35.838 346 214 3 16 356 6 348 3.70e-62 204
Msa1033150 MtrunA17_Chr5g0413941 35.671 328 205 3 19 345 11 333 8.28e-62 202
Msa1033150 MtrunA17_Chr3g0126101 34.012 344 214 5 16 356 7 340 2.19e-61 201
Msa1033150 MtrunA17_Chr2g0310441 34.139 331 211 3 16 344 11 336 1.12e-60 200
Msa1033150 MtrunA17_Chr5g0413961 31.402 328 217 2 12 339 11 330 6.30e-60 197
Msa1033150 MtrunA17_Chr1g0150151 31.214 346 229 4 1 344 1 339 3.91e-59 196
Msa1033150 MtrunA17_Chr5g0413921 35.061 328 203 5 20 344 12 332 1.03e-58 194
Msa1033150 MtrunA17_Chr5g0413951 35.404 322 196 5 20 337 12 325 6.89e-58 192
Msa1033150 MtrunA17_Chr7g0227921 34.615 338 206 6 11 344 7 333 2.38e-57 191
Msa1033150 MtrunA17_Chr4g0073241 30.499 341 223 4 16 351 9 340 1.49e-55 187
Msa1033150 MtrunA17_Chr5g0407971 34.718 337 206 4 15 339 11 345 1.72e-55 187
Msa1033150 MtrunA17_Chr5g0413931 34.146 328 206 5 20 344 11 331 2.44e-54 183
Msa1033150 MtrunA17_Chr4g0050931 32.754 345 184 4 11 349 8 310 2.98e-54 182
Msa1033150 MtrunA17_Chr6g0451171 31.694 366 237 7 9 372 6 360 3.25e-53 181
Msa1033150 MtrunA17_Chr5g0408001 34.513 339 208 4 15 341 10 346 1.06e-52 180
Msa1033150 MtrunA17_Chr4g0051001 33.115 305 201 2 12 315 28 330 8.74e-52 176
Msa1033150 MtrunA17_Chr5g0407991 33.918 342 214 2 15 345 9 349 1.03e-51 177
Msa1033150 MtrunA17_Chr6g0451251 33.989 356 223 5 9 362 6 351 1.50e-51 176
Msa1033150 MtrunA17_Chr5g0428881 29.080 337 238 1 10 346 13 348 2.93e-51 176
Msa1033150 MtrunA17_Chr6g0451201 32.402 358 230 6 5 362 2 347 2.94e-51 175
Msa1033150 MtrunA17_Chr5g0408031 33.333 342 212 4 12 339 7 346 4.87e-50 172
Msa1033150 MtrunA17_Chr5g0408041 34.402 343 209 4 15 343 11 351 1.38e-49 172
Msa1033150 MtrunA17_Chr6g0451211 32.647 340 215 6 9 344 6 335 3.01e-48 167
Msa1033150 MtrunA17_Chr5g0441761 28.529 333 228 2 19 351 18 340 8.27e-48 166
Msa1033150 MtrunA17_Chr3g0126091 29.794 339 221 5 16 345 12 342 2.89e-47 165
Msa1033150 MtrunA17_Chr8g0369841 30.060 336 223 2 15 339 9 343 8.97e-46 161
Msa1033150 MtrunA17_Chr1g0211801 32.432 259 170 3 7 265 3 256 2.31e-42 149
Msa1033150 MtrunA17_Chr6g0451261 30.159 315 211 5 5 318 4 310 3.15e-41 155
Msa1033150 MtrunA17_Chr5g0429001 30.357 280 190 2 68 346 8 283 5.57e-40 144
Msa1033150 MtrunA17_Chr3g0084091 31.276 243 164 1 95 337 10 249 6.93e-39 141
Msa1033150 MtrunA17_Chr5g0404811 34.389 221 143 1 123 343 1 219 2.17e-38 138
Msa1033150 MtrunA17_Chr2g0278021 35.023 217 134 3 129 340 1 215 5.82e-33 125
Msa1033150 MtrunA17_Chr6g0451191 31.984 247 156 5 129 373 1 237 6.77e-33 123
Msa1033150 MtrunA17_Chr4g0056081 28.487 337 208 10 19 338 18 338 2.21e-32 125
Msa1033150 MtrunA17_Chr1g0182261 45.714 140 73 3 208 344 78 217 3.35e-32 121
Msa1033150 MtrunA17_Chr1g0182261 40.000 75 45 0 11 85 10 84 2.68e-13 68.9
Msa1033150 MtrunA17_Chr8g0334711 36.139 202 115 4 16 212 11 203 7.21e-32 120
Msa1033150 MtrunA17_Chr5g0399281 27.329 322 228 5 19 338 12 329 6.85e-30 118
Msa1033150 MtrunA17_Chr1g0172881 41.781 146 70 4 123 265 16 149 3.09e-28 108
Msa1033150 MtrunA17_Chr5g0404801 44.444 117 65 0 12 128 4 120 2.07e-25 100
Msa1033150 MtrunA17_Chr8g0372571 93.478 46 3 0 244 289 1 46 1.50e-24 95.9
Msa1033150 MtrunA17_Chr2g0278031 42.342 111 64 0 15 125 14 124 2.63e-24 97.1
Msa1033150 MtrunA17_Chr4g0021721 91.304 46 4 0 244 289 1 46 6.55e-24 93.6
Msa1033150 MtrunA17_Chr8g0334721 40.164 122 73 0 229 350 1 122 9.22e-24 96.7
Msa1033150 MtrunA17_Chr1g0177231 51.899 79 38 0 266 344 29 107 4.18e-22 90.9
Msa1033150 MtrunA17_Chr1g0172891 51.250 80 38 1 272 351 13 91 4.00e-20 85.1
Msa1033150 MtrunA17_Chr8g0334731 30.189 212 121 7 16 224 12 199 2.50e-18 82.8
Msa1033150 MtrunA17_Chr4g0050911 40.449 89 52 1 95 182 11 99 5.62e-16 75.1
Msa1033150 MtrunA17_Chr4g0050921 32.353 102 69 0 217 318 3 104 5.80e-16 73.9
Msa1033150 MtrunA17_Chr1g0211811 40.541 74 44 0 267 340 1 74 8.08e-16 72.4
Msa1033150 MtrunA17_Chr6g0451241 52.459 61 27 1 284 344 26 84 1.40e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033150 AT5G07050.1 61.965 397 136 6 1 392 3 389 1.75e-172 487
Msa1033150 AT2G40900.1 53.619 373 160 4 12 382 7 368 2.05e-152 436
Msa1033150 AT3G56620.1 53.476 374 164 3 12 383 7 372 4.38e-142 409
Msa1033150 AT1G21890.1 47.396 384 188 3 15 388 10 389 2.24e-127 372
Msa1033150 AT4G08300.1 49.194 372 174 4 12 373 7 373 7.54e-124 363
Msa1033150 AT2G37460.1 50.882 340 155 3 12 345 11 344 1.01e-122 360
Msa1033150 AT1G44800.1 47.977 346 175 3 12 356 7 348 1.64e-120 354
Msa1033150 AT2G39510.1 47.632 359 182 3 15 372 7 360 2.27e-120 354
Msa1033150 AT1G21890.2 51.961 306 142 1 15 315 10 315 4.98e-114 337
Msa1033150 AT4G08290.1 46.588 337 175 2 1 337 1 332 1.46e-112 334
Msa1033150 AT5G13670.1 45.317 331 174 4 11 338 3 329 6.21e-103 310
Msa1033150 AT2G37450.2 43.235 340 165 3 12 350 5 317 7.55e-90 275
Msa1033150 AT1G09380.1 40.439 319 190 0 16 334 8 326 5.43e-86 266
Msa1033150 AT1G75500.1 37.396 361 217 4 12 365 16 374 4.75e-79 249
Msa1033150 AT1G75500.2 37.396 361 217 4 12 365 16 374 4.75e-79 249
Msa1033150 AT4G08290.2 42.803 264 146 2 1 264 1 259 8.15e-78 242
Msa1033150 AT3G18200.2 38.988 336 195 4 12 345 31 358 1.36e-76 242
Msa1033150 AT3G53210.1 37.500 336 201 2 12 344 6 335 2.66e-73 233
Msa1033150 AT5G64700.1 35.119 336 213 3 15 346 7 341 5.98e-73 232
Msa1033150 AT3G30340.1 36.000 325 205 1 15 339 10 331 2.13e-70 226
Msa1033150 AT1G43650.1 35.735 347 213 4 15 360 6 343 4.70e-68 219
Msa1033150 AT4G30420.2 35.311 354 207 6 15 356 8 351 7.38e-67 217
Msa1033150 AT1G25270.1 36.196 326 206 1 15 340 2 325 6.20e-66 214
Msa1033150 AT4G30420.1 35.362 345 213 4 18 356 1 341 3.06e-65 213
Msa1033150 AT2G37450.3 45.378 238 123 2 101 337 1 232 6.97e-65 208
Msa1033150 AT1G01070.1 34.278 353 224 4 1 351 1 347 1.42e-61 202
Msa1033150 AT1G68170.2 33.634 333 216 2 11 341 8 337 1.75e-56 189
Msa1033150 AT1G68170.1 34.043 329 212 2 15 341 2 327 4.54e-56 188
Msa1033150 AT4G01440.1 31.343 335 218 2 16 346 10 336 8.57e-56 187
Msa1033150 AT4G28040.1 32.036 334 204 7 12 340 4 319 5.87e-55 185
Msa1033150 AT4G28040.5 32.036 334 204 7 12 340 4 319 5.87e-55 185
Msa1033150 AT4G28040.3 32.036 334 204 7 12 340 4 319 5.87e-55 185
Msa1033150 AT4G28040.4 32.036 334 204 7 12 340 4 319 5.87e-55 185
Msa1033150 AT4G28040.2 32.036 334 204 7 12 340 4 319 5.87e-55 185
Msa1033150 AT1G11450.3 31.818 352 233 4 1 351 1 346 6.67e-55 185
Msa1033150 AT5G40210.1 33.739 329 182 6 19 339 16 316 7.42e-55 184
Msa1033150 AT1G11460.1 33.435 329 210 3 12 337 12 334 1.03e-54 184
Msa1033150 AT5G40240.1 31.454 337 227 4 4 338 7 341 1.23e-54 185
Msa1033150 AT5G40240.3 31.454 337 227 4 4 338 7 341 1.23e-54 185
Msa1033150 AT5G40240.2 31.765 340 227 5 2 338 18 355 1.39e-54 185
Msa1033150 AT5G40230.1 31.487 343 223 6 3 339 7 343 1.07e-52 180
Msa1033150 AT2G37450.1 42.411 224 122 2 128 350 61 278 2.13e-52 177
Msa1033150 AT2G37450.1 54.386 57 26 0 12 68 5 61 3.24e-13 70.1
Msa1033150 AT4G01430.1 30.588 340 230 4 12 348 5 341 4.20e-51 175
Msa1033150 AT3G53210.2 36.328 256 154 2 92 344 29 278 9.12e-51 173
Msa1033150 AT3G28050.1 31.579 342 216 9 10 345 5 334 8.25e-50 172
Msa1033150 AT5G45370.1 33.333 321 200 2 19 339 23 329 1.12e-49 171
Msa1033150 AT1G01070.2 34.932 292 182 4 62 351 15 300 3.86e-49 169
Msa1033150 AT3G45870.1 33.846 325 207 3 15 332 11 334 4.40e-49 171
Msa1033150 AT4G01440.3 30.921 304 198 2 16 315 10 305 5.05e-49 169
Msa1033150 AT1G11450.5 33.333 303 195 4 50 351 6 302 6.79e-49 168
Msa1033150 AT5G45370.2 32.229 332 213 2 19 339 23 353 1.23e-48 169
Msa1033150 AT5G45370.4 32.229 332 213 2 19 339 23 353 1.23e-48 169
Msa1033150 AT1G70260.1 29.290 338 227 3 16 345 12 345 1.76e-48 169
Msa1033150 AT3G53210.3 35.918 245 148 2 12 253 6 244 1.01e-47 164
Msa1033150 AT1G11450.2 33.000 300 194 4 53 351 2 295 3.10e-47 163
Msa1033150 AT3G18200.1 38.136 236 136 4 112 345 1 228 4.31e-47 161
Msa1033150 AT3G28130.2 32.047 337 211 7 19 345 16 344 9.84e-47 164
Msa1033150 AT4G19185.1 32.635 334 213 2 17 339 22 354 1.51e-46 164
Msa1033150 AT3G28100.1 31.378 341 219 7 7 340 4 336 1.57e-46 163
Msa1033150 AT5G64700.2 33.071 254 165 3 15 264 7 259 2.48e-46 160
Msa1033150 AT3G30340.2 34.263 251 162 1 15 265 10 257 3.09e-46 160
Msa1033150 AT4G15540.1 30.792 341 219 4 1 339 1 326 1.06e-45 160
Msa1033150 AT4G15540.2 30.792 341 219 4 1 339 1 326 1.06e-45 160
Msa1033150 AT1G11450.4 30.820 305 205 3 12 315 12 311 1.90e-44 157
Msa1033150 AT3G28070.2 35.102 245 153 4 98 340 7 247 2.05e-44 155
Msa1033150 AT3G28070.1 35.102 245 153 4 98 340 99 339 2.22e-43 155
Msa1033150 AT3G28130.5 34.783 253 157 4 98 345 9 258 5.20e-43 151
Msa1033150 AT3G28130.1 34.783 253 157 4 98 345 9 258 5.20e-43 151
Msa1033150 AT3G45870.8 33.117 308 198 3 15 315 11 317 7.01e-43 152
Msa1033150 AT4G01430.2 30.945 307 206 4 12 315 5 308 6.40e-42 150
Msa1033150 AT5G47470.1 30.725 345 223 7 4 343 18 351 6.87e-42 151
Msa1033150 AT5G47470.2 31.515 330 210 7 19 343 61 379 7.44e-42 152
Msa1033150 AT5G47470.3 30.725 345 223 7 4 343 46 379 9.56e-42 151
Msa1033150 AT4G24980.1 29.773 309 147 5 30 338 1 239 1.75e-41 147
Msa1033150 AT3G28080.5 36.475 244 147 6 100 340 9 247 1.23e-40 145
Msa1033150 AT3G28080.7 36.475 244 147 6 100 340 9 247 1.23e-40 145
Msa1033150 AT3G28080.8 36.475 244 147 6 100 340 9 247 1.23e-40 145
Msa1033150 AT3G28080.6 36.475 244 147 6 100 340 9 247 1.23e-40 145
Msa1033150 AT3G28080.1 32.622 328 207 9 19 340 17 336 1.80e-40 147
Msa1033150 AT3G28080.2 36.475 244 147 6 100 340 90 328 1.06e-39 145
Msa1033150 AT4G01440.4 31.890 254 161 2 16 265 10 255 1.71e-39 142
Msa1033150 AT1G43650.2 33.068 251 159 3 15 264 6 248 1.98e-39 142
Msa1033150 AT4G01450.2 32.188 320 200 3 28 342 21 328 3.92e-38 141
Msa1033150 AT4G01450.1 30.717 293 186 3 28 315 21 301 2.68e-36 135
Msa1033150 AT3G45870.9 34.146 246 155 2 15 253 11 256 1.35e-35 132
Msa1033150 AT1G11450.1 31.274 259 171 3 94 351 2 254 1.53e-35 131
Msa1033150 AT4G19185.2 31.395 258 165 2 93 339 20 276 2.13e-35 132
Msa1033150 AT1G60050.1 26.562 384 244 7 16 383 13 374 5.15e-35 133
Msa1033150 AT4G01440.5 30.342 234 151 2 117 346 3 228 3.47e-34 127
Msa1033150 AT4G01440.2 30.342 234 151 2 117 346 3 228 3.47e-34 127
Msa1033150 AT4G01450.4 33.188 229 136 3 28 251 21 237 4.75e-33 125
Msa1033150 AT4G16620.1 30.921 304 197 7 46 343 41 337 1.08e-32 126
Msa1033150 AT3G28070.3 33.182 220 141 4 98 315 99 314 1.65e-32 125
Msa1033150 AT4G01450.3 33.962 212 123 3 28 234 21 220 1.03e-30 118
Msa1033150 AT5G45370.6 30.677 251 162 2 100 339 2 251 4.34e-30 117
Msa1033150 AT5G45370.5 30.677 251 162 2 100 339 2 251 4.34e-30 117
Msa1033150 AT3G28070.5 32.243 214 139 4 129 340 1 210 1.11e-29 115
Msa1033150 AT3G28130.3 32.432 222 142 4 129 345 1 219 2.24e-29 114
Msa1033150 AT3G28080.3 28.528 326 169 8 19 340 17 282 2.07e-27 110
Msa1033150 AT3G28080.4 30.992 242 109 5 100 340 9 193 2.64e-27 108
Msa1033150 AT3G28080.9 33.953 215 134 6 129 340 1 210 7.98e-27 107
Msa1033150 AT3G28100.3 30.645 248 159 5 19 260 17 257 1.68e-26 107
Msa1033150 AT3G45870.5 32.547 212 135 3 128 332 49 259 1.31e-25 105
Msa1033150 AT3G28130.4 29.435 248 162 5 19 260 16 256 7.08e-24 100
Msa1033150 AT4G16620.4 30.364 247 161 5 101 343 1 240 1.30e-23 99.4
Msa1033150 AT4G16620.2 30.364 247 161 5 101 343 1 240 1.30e-23 99.4
Msa1033150 AT3G28100.2 32.663 199 122 4 19 212 17 208 4.22e-21 92.0
Msa1033150 AT5G45370.3 27.984 243 161 3 110 339 52 293 1.31e-20 92.0
Msa1033150 AT3G28130.6 31.658 199 124 4 19 212 16 207 4.33e-20 88.6
Msa1033150 AT4G01430.3 27.536 207 145 3 144 348 1 204 7.08e-20 88.2
Msa1033150 AT3G45870.6 31.282 195 126 3 128 315 49 242 1.06e-19 88.2
Msa1033150 AT3G45870.7 31.282 195 126 3 128 315 49 242 1.06e-19 88.2
Msa1033150 AT4G16620.3 29.208 202 135 4 46 245 41 236 1.30e-19 88.2
Msa1033150 AT3G45870.2 33.333 147 97 1 186 332 38 183 2.56e-16 78.2
Msa1033150 AT3G45870.4 32.061 131 82 2 130 253 4 134 1.52e-12 65.5
Msa1033150 AT3G45870.3 32.331 133 83 2 128 253 49 181 1.97e-12 66.2
Msa1033150 AT3G28060.1 27.922 154 88 5 169 315 17 154 1.16e-11 62.8

Find 92 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTACATATTTAAACTTT+TGG 0.203502 7_1:-68171535 None:intergenic
GGAATTTAGGATGGAGAAAT+TGG 0.206523 7_1:+68169906 Msa1033150:intron
AATTCAATTAAGTTACATTA+TGG 0.211640 7_1:-68171748 None:intergenic
GGCTTCTTTCTTCATTCTTC+AGG 0.214826 7_1:+68170146 Msa1033150:CDS
TTAAATATGTAGATATTATT+AGG 0.226319 7_1:+68171543 Msa1033150:exon
GATGATCATTGTAGCAATTA+TGG 0.238191 7_1:+68170834 Msa1033150:CDS
GCAATGATTTGTCTACAATT+TGG 0.240667 7_1:+68169098 Msa1033150:CDS
TTATCATCACTACCTTTCTT+TGG 0.252134 7_1:+68171665 Msa1033150:three_prime_UTR
ATTTGTGATTGCAGTGTTAT+TGG 0.259447 7_1:+68171295 Msa1033150:intron
ATCACGTAGAGTTGAGAAAT+TGG 0.280355 7_1:+68171606 Msa1033150:three_prime_UTR
TCTCTCTATCAGTAGTATTA+TGG 0.314109 7_1:-68169009 None:intergenic
TCATTATTGCCACCTTTGCT+TGG 0.320554 7_1:+68170124 Msa1033150:CDS
CCTGAAAACACTACTGATTC+TGG 0.323745 7_1:+68170069 Msa1033150:CDS
TAGGACTTTACTCAGTTCTA+TGG 0.324315 7_1:+68171335 Msa1033150:CDS
ATAACCGGGCCCACACTTAA+TGG 0.328176 7_1:-68171725 None:intergenic
GGAACTGTAATTACAGTTGC+TGG 0.333568 7_1:+68169964 Msa1033150:CDS
TAAGTTACATTATGGATAAC+CGG 0.335801 7_1:-68171740 None:intergenic
CATTATTGCCACCTTTGCTT+GGG 0.365039 7_1:+68170125 Msa1033150:CDS
CAACCAATGCTCCAAGCATT+TGG 0.368276 7_1:-68170370 None:intergenic
TGTAGAAAATGGAGTAATAT+TGG 0.373183 7_1:+68171420 Msa1033150:CDS
ATGAAGTGTTGTGTAGAAAA+TGG 0.377896 7_1:+68171409 Msa1033150:CDS
TAATAGCACATGAGTAGGTT+GGG 0.409987 7_1:-68169721 None:intergenic
TACCTTTCTTTGGAAAACTT+TGG 0.411135 7_1:+68171675 Msa1033150:three_prime_UTR
ATGATCATTGTAGCAATTAT+GGG 0.413953 7_1:+68170835 Msa1033150:CDS
AGACAAATCATTGCTATGTA+AGG 0.421535 7_1:-68169089 None:intergenic
CAGTTCCAATCACCTTTACT+TGG 0.422944 7_1:-68169948 None:intergenic
AAATGATATTGAAATGCAAA+AGG 0.427377 7_1:+68171471 Msa1033150:CDS
CACAGCTATAGTGTGTTCCT+TGG 0.437061 7_1:+68170303 Msa1033150:CDS
AAGCCAAATGCTTGGAGCAT+TGG 0.441831 7_1:+68170367 Msa1033150:CDS
AGATGCCAAGTAAAGGTGAT+TGG 0.445654 7_1:+68169943 Msa1033150:CDS
ATGTTCGTGTTGGGACTCCT+CGG 0.448412 7_1:+68169396 Msa1033150:CDS
GCCATGACAAATGTCATTGC+TGG 0.449617 7_1:-68169755 None:intergenic
AACATAAGAAATGTGATCCT+TGG 0.453298 7_1:-68169366 None:intergenic
AGGACTTTACTCAGTTCTAT+GGG 0.455974 7_1:+68171336 Msa1033150:CDS
GATCAGAACCTATACTATGC+TGG 0.460553 7_1:+68169683 Msa1033150:CDS
TTGTCATTGGCAGGAAGATA+AGG 0.461420 7_1:+68169343 Msa1033150:intron
CAAATGCTTGGAGCATTGGT+TGG 0.475581 7_1:+68170371 Msa1033150:CDS
CTCTCAAGAACAATAGCAAA+TGG 0.479507 7_1:-68169224 None:intergenic
GGAATAGTCATGCAAAAGAA+AGG 0.480743 7_1:+68170778 Msa1033150:CDS
AAATGCTTGGAGCATTGGTT+GGG 0.486794 7_1:+68170372 Msa1033150:CDS
GGTCTTACCTACTATGTTCA+AGG 0.488423 7_1:+68170757 Msa1033150:CDS
TTCAAAAGGAAATTATATTG+AGG 0.488849 7_1:+68171783 Msa1033150:three_prime_UTR
ATTTCAACCCAGCATAGTAT+AGG 0.492882 7_1:-68169691 None:intergenic
CTAATAGCACATGAGTAGGT+TGG 0.498278 7_1:-68169722 None:intergenic
TGTTCGTGTTGGGACTCCTC+GGG 0.499429 7_1:+68169397 Msa1033150:CDS
CATTTGCTATTGTTCTTGAG+AGG 0.504801 7_1:+68169225 Msa1033150:CDS
GAACTGTAATTACAGTTGCT+GGG 0.505303 7_1:+68169965 Msa1033150:CDS
TCACGTAGAGTTGAGAAATT+GGG 0.508042 7_1:+68171607 Msa1033150:three_prime_UTR
ACAGCTATAGTGTGTTCCTT+GGG 0.509092 7_1:+68170304 Msa1033150:CDS
TTTATGCAAATGTTCGTGTT+GGG 0.509361 7_1:+68169387 Msa1033150:CDS
GAGCAGGGTATAATATCATC+AGG 0.517268 7_1:+68170736 Msa1033150:intron
AGGACCATTAAGTGTGGGCC+CGG 0.523031 7_1:+68171721 Msa1033150:three_prime_UTR
AAAATTAAGATGCCAAGTAA+AGG 0.523206 7_1:+68169936 Msa1033150:CDS
GAAAGGTAGTGATGATAATG+AGG 0.529638 7_1:-68171660 None:intergenic
ATCAGAACCTATACTATGCT+GGG 0.534041 7_1:+68169684 Msa1033150:CDS
GTTTATGCAAATGTTCGTGT+TGG 0.539764 7_1:+68169386 Msa1033150:CDS
AATGATATTGAAATGCAAAA+GGG 0.540111 7_1:+68171472 Msa1033150:CDS
AAATTCAGGCTGTGACATTG+AGG 0.548667 7_1:+68170257 Msa1033150:intron
GACTATTCCTTGAACATAGT+AGG 0.549973 7_1:-68170764 None:intergenic
GAATAGTCATGCAAAAGAAA+GGG 0.552823 7_1:+68170779 Msa1033150:CDS
CCCAGCAATGACATTTGTCA+TGG 0.557417 7_1:+68169754 Msa1033150:CDS
TGATTAGGACCATTAAGTGT+GGG 0.561450 7_1:+68171716 Msa1033150:three_prime_UTR
GATGATAATGAGGATGAAGA+AGG 0.563760 7_1:-68171650 None:intergenic
TGGAGCATAAGCCAAATGCT+TGG 0.566635 7_1:+68170359 Msa1033150:CDS
AATTACAGTTGCTGGGGCCA+TGG 0.571553 7_1:+68169972 Msa1033150:CDS
ATATTGGAAACAGTGATTGA+AGG 0.577888 7_1:+68171436 Msa1033150:CDS
GAAAGAAGCCCAAGCAAAGG+TGG 0.577910 7_1:-68170133 None:intergenic
AAGCAAAGGTGGCAATAATG+AGG 0.583286 7_1:-68170122 None:intergenic
TAGAGTTGAGAAATTGGGAG+GGG 0.583687 7_1:+68171612 Msa1033150:three_prime_UTR
AATTGATTGAAGTGTGCCCA+AGG 0.589839 7_1:-68170320 None:intergenic
AATAGCACATGAGTAGGTTG+GGG 0.594825 7_1:-68169720 None:intergenic
TATAGGTTCTGATCAATCAC+AGG 0.594938 7_1:-68169674 None:intergenic
ATTGCTAATAGCACATGAGT+AGG 0.596686 7_1:-68169726 None:intergenic
AACTGTAATTACAGTTGCTG+GGG 0.596912 7_1:+68169966 Msa1033150:CDS
GCTACAATGATCATCATCAA+AGG 0.605705 7_1:-68170826 None:intergenic
AAGTTACATTATGGATAACC+GGG 0.607834 7_1:-68171739 None:intergenic
CCATGACAAATGTCATTGCT+GGG 0.609642 7_1:-68169754 None:intergenic
TGGTATGAACATAATAACAA+AGG 0.615728 7_1:+68169127 Msa1033150:CDS
TTGATTAGGACCATTAAGTG+TGG 0.624939 7_1:+68171715 Msa1033150:three_prime_UTR
CGTAGAGTTGAGAAATTGGG+AGG 0.627084 7_1:+68171610 Msa1033150:three_prime_UTR
GAAGAAAGAAGCCCAAGCAA+AGG 0.631452 7_1:-68170136 None:intergenic
TAATACTACTGATAGAGAGA+AGG 0.633010 7_1:+68169012 Msa1033150:five_prime_UTR
TGAAGAAGAGACAATAACTG+AGG 0.638287 7_1:+68171384 Msa1033150:CDS
GAAGAAGAGACAATAACTGA+GGG 0.639766 7_1:+68171385 Msa1033150:CDS
GAACATAGTGACTCATTCCA+CGG 0.650720 7_1:-68169160 None:intergenic
TTGGCAGGAAGATAAGGCCA+AGG 0.651054 7_1:+68169349 Msa1033150:intron
AGAAACAGAGTTGTATACAG+AGG 0.655104 7_1:-68168973 None:intergenic
GTAGAGTTGAGAAATTGGGA+GGG 0.658226 7_1:+68171611 Msa1033150:three_prime_UTR
TTTGTATAATGTCATCACCA+TGG 0.663821 7_1:-68169989 None:intergenic
GGACTTTACTCAGTTCTATG+GGG 0.681459 7_1:+68171337 Msa1033150:CDS
ACAAAGGTTTCACTCAACCG+TGG 0.684285 7_1:+68169143 Msa1033150:CDS
ATGGTGATGACATTATACAA+AGG 0.703249 7_1:+68169991 Msa1033150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGTTATTGTTTTTATT+AGG + chr7_1:68169651-68169670 Msa1033150:intron 10.0%
!!! AATTTAAAACTTTGATAAAA+GGG - chr7_1:68170438-68170457 None:intergenic 10.0%
!!! GTTTTATTTTATTTTTGTAA+TGG + chr7_1:68170919-68170938 Msa1033150:intron 10.0%
!!! AAAATAATAAAGCATTTAAA+AGG + chr7_1:68171194-68171213 Msa1033150:intron 10.0%
!! TTAAATATGTAGATATTATT+AGG + chr7_1:68171543-68171562 Msa1033150:exon 10.0%
!!! AACAAATTTTAGAACATTTT+TGG - chr7_1:68169639-68169658 None:intergenic 15.0%
!!! ATTTAAAACTTTGATAAAAG+GGG - chr7_1:68170437-68170456 None:intergenic 15.0%
!!! CAATTTAAAACTTTGATAAA+AGG - chr7_1:68170439-68170458 None:intergenic 15.0%
!! AAACACTTTATTATATAACA+TGG - chr7_1:68170903-68170922 None:intergenic 15.0%
!!! ATTTATCTCCATTATAATTT+TGG + chr7_1:68170949-68170968 Msa1033150:intron 15.0%
!!! TTTATCTCCATTATAATTTT+GGG + chr7_1:68170950-68170969 Msa1033150:intron 15.0%
!!! TCATAAAAAAGCATATATAT+AGG + chr7_1:68171228-68171247 Msa1033150:intron 15.0%
!!! TATCTACATATTTAAACTTT+TGG - chr7_1:68171538-68171557 None:intergenic 15.0%
!! AATTCAATTAAGTTACATTA+TGG - chr7_1:68171751-68171770 None:intergenic 15.0%
!! TTATCATTAAGAATGAATGA+TGG - chr7_1:68169254-68169273 None:intergenic 20.0%
!! AATTGTTCAATCTTAATCAA+TGG + chr7_1:68169555-68169574 Msa1033150:intron 20.0%
!!! TATGCTTTATTTTGGAATTT+AGG + chr7_1:68169893-68169912 Msa1033150:intron 20.0%
!!! TCTATTTTGTGATTAAATTC+AGG + chr7_1:68170243-68170262 Msa1033150:intron 20.0%
!!! TTTAAAACTTTGATAAAAGG+GGG - chr7_1:68170436-68170455 None:intergenic 20.0%
!!! TTTTATTTTTGTAATGGAAG+TGG + chr7_1:68170925-68170944 Msa1033150:intron 20.0%
!!! TTATCTCCATTATAATTTTG+GGG + chr7_1:68170951-68170970 Msa1033150:intron 20.0%
!!! TTTTTTCCCCAAAATTATAA+TGG - chr7_1:68170960-68170979 None:intergenic 20.0%
!!! ATAATTTTGGGGAAAAAAAT+TGG + chr7_1:68170962-68170981 Msa1033150:intron 20.0%
!!! CAAGGTTTTAATTTTATTTG+TGG - chr7_1:68171067-68171086 None:intergenic 20.0%
!!! AAAAAGCATATATATAGGAA+CGG + chr7_1:68171233-68171252 Msa1033150:intron 20.0%
!! AAATGATATTGAAATGCAAA+AGG + chr7_1:68171471-68171490 Msa1033150:CDS 20.0%
!! AATGATATTGAAATGCAAAA+GGG + chr7_1:68171472-68171491 Msa1033150:CDS 20.0%
!! TTCAAAAGGAAATTATATTG+AGG + chr7_1:68171783-68171802 Msa1033150:three_prime_UTR 20.0%
! AGAGAGAAGGAAAAAAAAAA+TGG + chr7_1:68169025-68169044 Msa1033150:exon 25.0%
! AGAAGGAAAAAAAAAATGGA+AGG + chr7_1:68169029-68169048 Msa1033150:exon 25.0%
! AAAAAAAAATGGAAGGAGAT+AGG + chr7_1:68169036-68169055 Msa1033150:exon 25.0%
! TGGTATGAACATAATAACAA+AGG + chr7_1:68169127-68169146 Msa1033150:CDS 25.0%
! ATCATTAGATCGATATTGAA+CGG + chr7_1:68169506-68169525 Msa1033150:intron 25.0%
!!! GTGTTACATATGCTTTATTT+TGG + chr7_1:68169885-68169904 Msa1033150:intron 25.0%
!!! CTTTATTTTGGAATTTAGGA+TGG + chr7_1:68169897-68169916 Msa1033150:intron 25.0%
! AAAATTAAGATGCCAAGTAA+AGG + chr7_1:68169936-68169955 Msa1033150:CDS 25.0%
!!! TTTTCAGGTTCATAATTTCT+AGG - chr7_1:68170057-68170076 None:intergenic 25.0%
! TTAAAACTTTGATAAAAGGG+GGG - chr7_1:68170435-68170454 None:intergenic 25.0%
! CTCGTCACTAAATTTATTAA+CGG + chr7_1:68170525-68170544 Msa1033150:intron 25.0%
!!! GAGTTTTTTTAGTAGTGTAA+TGG + chr7_1:68170580-68170599 Msa1033150:intron 25.0%
!!! TTTTTAGTAGTGTAATGGTT+TGG + chr7_1:68170585-68170604 Msa1033150:intron 25.0%
! CAAAAAAAAACAATATGTCG+CGG + chr7_1:68170623-68170642 Msa1033150:intron 25.0%
! ATCAACAAGCATAAAAAATG+GGG - chr7_1:68170679-68170698 None:intergenic 25.0%
! CATCAACAAGCATAAAAAAT+GGG - chr7_1:68170680-68170699 None:intergenic 25.0%
! TCATCAACAAGCATAAAAAA+TGG - chr7_1:68170681-68170700 None:intergenic 25.0%
!! GTATTAATGGATGTAAACTT+TGG + chr7_1:68170712-68170731 Msa1033150:intron 25.0%
! ATGATCATTGTAGCAATTAT+GGG + chr7_1:68170835-68170854 Msa1033150:CDS 25.0%
!!! CAAGATATAATTTTTCAGCA+AGG - chr7_1:68170870-68170889 None:intergenic 25.0%
! CTTGCTGAAAAATTATATCT+TGG + chr7_1:68170868-68170887 Msa1033150:CDS 25.0%
! CTGAAAAATTATATCTTGGA+GGG + chr7_1:68170872-68170891 Msa1033150:CDS 25.0%
! TTGATATGTTCATAGTTCAT+TGG - chr7_1:68171096-68171115 None:intergenic 25.0%
! TGTAGAAAATGGAGTAATAT+TGG + chr7_1:68171420-68171439 Msa1033150:CDS 25.0%
! TAAGTTACATTATGGATAAC+CGG - chr7_1:68171743-68171762 None:intergenic 25.0%
!! TTTTGCATACTTTGTTCAAA+AGG + chr7_1:68171769-68171788 Msa1033150:three_prime_UTR 25.0%
TCTCTCTATCAGTAGTATTA+TGG - chr7_1:68169012-68169031 None:intergenic 30.0%
TAATACTACTGATAGAGAGA+AGG + chr7_1:68169012-68169031 Msa1033150:five_prime_UTR 30.0%
AGACAAATCATTGCTATGTA+AGG - chr7_1:68169092-68169111 None:intergenic 30.0%
! GCAATGATTTGTCTACAATT+TGG + chr7_1:68169098-68169117 Msa1033150:CDS 30.0%
AACATAAGAAATGTGATCCT+TGG - chr7_1:68169369-68169388 None:intergenic 30.0%
TTTATGCAAATGTTCGTGTT+GGG + chr7_1:68169387-68169406 Msa1033150:CDS 30.0%
GATTTAGATGACATGATTGT+AGG - chr7_1:68169489-68169508 None:intergenic 30.0%
TTTGTATAATGTCATCACCA+TGG - chr7_1:68169992-68170011 None:intergenic 30.0%
! ATGGTGATGACATTATACAA+AGG + chr7_1:68169991-68170010 Msa1033150:CDS 30.0%
TGATTCTGGTGAAAAAGATT+GGG + chr7_1:68170083-68170102 Msa1033150:CDS 30.0%
! AATTGCTGTGACTTTTGTTA+TGG + chr7_1:68170339-68170358 Msa1033150:CDS 30.0%
! CTTGTTGATGAATTTATCGA+GGG + chr7_1:68170690-68170709 Msa1033150:intron 30.0%
!! GAATTTATCGAGGGTATTAA+TGG + chr7_1:68170699-68170718 Msa1033150:intron 30.0%
GAATAGTCATGCAAAAGAAA+GGG + chr7_1:68170779-68170798 Msa1033150:CDS 30.0%
GATGATCATTGTAGCAATTA+TGG + chr7_1:68170834-68170853 Msa1033150:CDS 30.0%
GCTGAAAAATTATATCTTGG+AGG + chr7_1:68170871-68170890 Msa1033150:CDS 30.0%
TCACATCGCAATTATAATTG+TGG - chr7_1:68171009-68171028 None:intergenic 30.0%
CTTTAATATTGCATCACAAG+TGG + chr7_1:68171040-68171059 Msa1033150:intron 30.0%
ATAGTTCATTGGATTGAACA+AGG - chr7_1:68171085-68171104 None:intergenic 30.0%
ATTTGTGATTGCAGTGTTAT+TGG + chr7_1:68171295-68171314 Msa1033150:intron 30.0%
!! ATGAAGTGTTGTGTAGAAAA+TGG + chr7_1:68171409-68171428 Msa1033150:CDS 30.0%
ATATTGGAAACAGTGATTGA+AGG + chr7_1:68171436-68171455 Msa1033150:CDS 30.0%
!! TGAAGCTACTAAAGTTTTGA+GGG + chr7_1:68171495-68171514 Msa1033150:CDS 30.0%
TTATCATCACTACCTTTCTT+TGG + chr7_1:68171665-68171684 Msa1033150:three_prime_UTR 30.0%
! TACCTTTCTTTGGAAAACTT+TGG + chr7_1:68171675-68171694 Msa1033150:three_prime_UTR 30.0%
! TACCAAAGTTTTCCAAAGAA+AGG - chr7_1:68171680-68171699 None:intergenic 30.0%
!! CTTTGGTAAAGCATTTTTAG+TGG + chr7_1:68171692-68171711 Msa1033150:three_prime_UTR 30.0%
!!! AGCATTTTTAGTGGTTGATT+AGG + chr7_1:68171701-68171720 Msa1033150:three_prime_UTR 30.0%
AAGTTACATTATGGATAACC+GGG - chr7_1:68171742-68171761 None:intergenic 30.0%
AGAAACAGAGTTGTATACAG+AGG - chr7_1:68168976-68168995 None:intergenic 35.0%
!!! TGTCTACAATTTGGTTTTGC+TGG + chr7_1:68169107-68169126 Msa1033150:CDS 35.0%
CTCTCAAGAACAATAGCAAA+TGG - chr7_1:68169227-68169246 None:intergenic 35.0%
!! CATTTGCTATTGTTCTTGAG+AGG + chr7_1:68169225-68169244 Msa1033150:CDS 35.0%
! CACACTCTATTTCTTGTCAT+TGG + chr7_1:68169330-68169349 Msa1033150:intron 35.0%
GTTTATGCAAATGTTCGTGT+TGG + chr7_1:68169386-68169405 Msa1033150:CDS 35.0%
! TATAGGTTCTGATCAATCAC+AGG - chr7_1:68169677-68169696 None:intergenic 35.0%
ATCAGAACCTATACTATGCT+GGG + chr7_1:68169684-68169703 Msa1033150:CDS 35.0%
ATTTCAACCCAGCATAGTAT+AGG - chr7_1:68169694-68169713 None:intergenic 35.0%
TAATAGCACATGAGTAGGTT+GGG - chr7_1:68169724-68169743 None:intergenic 35.0%
ATTGCTAATAGCACATGAGT+AGG - chr7_1:68169729-68169748 None:intergenic 35.0%
!! TTGTCATGGCAGTTATTTTC+AGG + chr7_1:68169768-68169787 Msa1033150:CDS 35.0%
! GGAATTTAGGATGGAGAAAT+TGG + chr7_1:68169906-68169925 Msa1033150:intron 35.0%
GAACTGTAATTACAGTTGCT+GGG + chr7_1:68169965-68169984 Msa1033150:CDS 35.0%
AACTGTAATTACAGTTGCTG+GGG + chr7_1:68169966-68169985 Msa1033150:CDS 35.0%
CTGATTCTGGTGAAAAAGAT+TGG + chr7_1:68170082-68170101 Msa1033150:CDS 35.0%
GGTGAAAAAGATTGGGTTAA+AGG + chr7_1:68170090-68170109 Msa1033150:CDS 35.0%
! AGAAATATCGACTGTGATCT+TGG - chr7_1:68170649-68170668 None:intergenic 35.0%
! GCTTGTTGATGAATTTATCG+AGG + chr7_1:68170689-68170708 Msa1033150:intron 35.0%
GACTATTCCTTGAACATAGT+AGG - chr7_1:68170767-68170786 None:intergenic 35.0%
GGAATAGTCATGCAAAAGAA+AGG + chr7_1:68170778-68170797 Msa1033150:CDS 35.0%
GCTACAATGATCATCATCAA+AGG - chr7_1:68170829-68170848 None:intergenic 35.0%
AAGCATATATATAGGAACGG+TGG + chr7_1:68171236-68171255 Msa1033150:intron 35.0%
!!! GGAGCTATTTTGATCGTAAT+AGG + chr7_1:68171316-68171335 Msa1033150:CDS 35.0%
TAGGACTTTACTCAGTTCTA+TGG + chr7_1:68171335-68171354 Msa1033150:CDS 35.0%
AGGACTTTACTCAGTTCTAT+GGG + chr7_1:68171336-68171355 Msa1033150:CDS 35.0%
TGAAGAAGAGACAATAACTG+AGG + chr7_1:68171384-68171403 Msa1033150:CDS 35.0%
GAAGAAGAGACAATAACTGA+GGG + chr7_1:68171385-68171404 Msa1033150:CDS 35.0%
! GTGAAGCTACTAAAGTTTTG+AGG + chr7_1:68171494-68171513 Msa1033150:CDS 35.0%
ATCACGTAGAGTTGAGAAAT+TGG + chr7_1:68171606-68171625 Msa1033150:three_prime_UTR 35.0%
TCACGTAGAGTTGAGAAATT+GGG + chr7_1:68171607-68171626 Msa1033150:three_prime_UTR 35.0%
! GATGATAATGAGGATGAAGA+AGG - chr7_1:68171653-68171672 None:intergenic 35.0%
! GAAAGGTAGTGATGATAATG+AGG - chr7_1:68171663-68171682 None:intergenic 35.0%
TTGATTAGGACCATTAAGTG+TGG + chr7_1:68171715-68171734 Msa1033150:three_prime_UTR 35.0%
TGATTAGGACCATTAAGTGT+GGG + chr7_1:68171716-68171735 Msa1033150:three_prime_UTR 35.0%
GAACATAGTGACTCATTCCA+CGG - chr7_1:68169163-68169182 None:intergenic 40.0%
! CTCTATTTCTTGTCATTGGC+AGG + chr7_1:68169334-68169353 Msa1033150:intron 40.0%
TTGTCATTGGCAGGAAGATA+AGG + chr7_1:68169343-68169362 Msa1033150:intron 40.0%
GATCAGAACCTATACTATGC+TGG + chr7_1:68169683-68169702 Msa1033150:CDS 40.0%
AATAGCACATGAGTAGGTTG+GGG - chr7_1:68169723-68169742 None:intergenic 40.0%
CTAATAGCACATGAGTAGGT+TGG - chr7_1:68169725-68169744 None:intergenic 40.0%
CCATGACAAATGTCATTGCT+GGG - chr7_1:68169757-68169776 None:intergenic 40.0%
AGATGCCAAGTAAAGGTGAT+TGG + chr7_1:68169943-68169962 Msa1033150:CDS 40.0%
CAGTTCCAATCACCTTTACT+TGG - chr7_1:68169951-68169970 None:intergenic 40.0%
GGAACTGTAATTACAGTTGC+TGG + chr7_1:68169964-68169983 Msa1033150:CDS 40.0%
! CCAGAATCAGTAGTGTTTTC+AGG - chr7_1:68170072-68170091 None:intergenic 40.0%
!! CCTGAAAACACTACTGATTC+TGG + chr7_1:68170069-68170088 Msa1033150:CDS 40.0%
AAGCAAAGGTGGCAATAATG+AGG - chr7_1:68170125-68170144 None:intergenic 40.0%
TCATTATTGCCACCTTTGCT+TGG + chr7_1:68170124-68170143 Msa1033150:CDS 40.0%
CATTATTGCCACCTTTGCTT+GGG + chr7_1:68170125-68170144 Msa1033150:CDS 40.0%
GGCTTCTTTCTTCATTCTTC+AGG + chr7_1:68170146-68170165 Msa1033150:CDS 40.0%
AAATTCAGGCTGTGACATTG+AGG + chr7_1:68170257-68170276 Msa1033150:intron 40.0%
ACAGCTATAGTGTGTTCCTT+GGG + chr7_1:68170304-68170323 Msa1033150:CDS 40.0%
AATTGATTGAAGTGTGCCCA+AGG - chr7_1:68170323-68170342 None:intergenic 40.0%
!! AAATGCTTGGAGCATTGGTT+GGG + chr7_1:68170372-68170391 Msa1033150:CDS 40.0%
!! GTAGTGTAATGGTTTGGTTC+TGG + chr7_1:68170591-68170610 Msa1033150:intron 40.0%
GATGTAAACTTTGGTGAGCA+GGG + chr7_1:68170721-68170740 Msa1033150:intron 40.0%
GAGCAGGGTATAATATCATC+AGG + chr7_1:68170736-68170755 Msa1033150:intron 40.0%
GGTCTTACCTACTATGTTCA+AGG + chr7_1:68170757-68170776 Msa1033150:CDS 40.0%
CTGAAAGCAGTGACAAAAAC+TGG - chr7_1:68170805-68170824 None:intergenic 40.0%
AGGAACGGTGGTAAACAATT+TGG + chr7_1:68171248-68171267 Msa1033150:intron 40.0%
GGACTTTACTCAGTTCTATG+GGG + chr7_1:68171337-68171356 Msa1033150:CDS 40.0%
GTAGAGTTGAGAAATTGGGA+GGG + chr7_1:68171611-68171630 Msa1033150:three_prime_UTR 40.0%
TAGAGTTGAGAAATTGGGAG+GGG + chr7_1:68171612-68171631 Msa1033150:three_prime_UTR 40.0%
ACAAAGGTTTCACTCAACCG+TGG + chr7_1:68169143-68169162 Msa1033150:CDS 45.0%
!! GTCAGAAAAGTACTAACCCG+AGG - chr7_1:68169416-68169435 None:intergenic 45.0%
CCCAGCAATGACATTTGTCA+TGG + chr7_1:68169754-68169773 Msa1033150:CDS 45.0%
GCCATGACAAATGTCATTGC+TGG - chr7_1:68169758-68169777 None:intergenic 45.0%
GAAGAAAGAAGCCCAAGCAA+AGG - chr7_1:68170139-68170158 None:intergenic 45.0%
CACAGCTATAGTGTGTTCCT+TGG + chr7_1:68170303-68170322 Msa1033150:CDS 45.0%
TGGAGCATAAGCCAAATGCT+TGG + chr7_1:68170359-68170378 Msa1033150:CDS 45.0%
AAGCCAAATGCTTGGAGCAT+TGG + chr7_1:68170367-68170386 Msa1033150:CDS 45.0%
CAACCAATGCTCCAAGCATT+TGG - chr7_1:68170373-68170392 None:intergenic 45.0%
!! CAAATGCTTGGAGCATTGGT+TGG + chr7_1:68170371-68170390 Msa1033150:CDS 45.0%
!! GTGTAATGGTTTGGTTCTGG+TGG + chr7_1:68170594-68170613 Msa1033150:intron 45.0%
GGATGTAAACTTTGGTGAGC+AGG + chr7_1:68170720-68170739 Msa1033150:intron 45.0%
CGTAGAGTTGAGAAATTGGG+AGG + chr7_1:68171610-68171629 Msa1033150:three_prime_UTR 45.0%
!! AGATTATATAAATATTAATT+TGG - chr7_1:68169818-68169837 None:intergenic 5.0%
!! TTATAAATTAATTAAGAAAT+TGG + chr7_1:68170180-68170199 Msa1033150:intron 5.0%
TTGGCAGGAAGATAAGGCCA+AGG + chr7_1:68169349-68169368 Msa1033150:intron 50.0%
ATGTTCGTGTTGGGACTCCT+CGG + chr7_1:68169396-68169415 Msa1033150:CDS 50.0%
AATTACAGTTGCTGGGGCCA+TGG + chr7_1:68169972-68169991 Msa1033150:CDS 50.0%
GAAAGAAGCCCAAGCAAAGG+TGG - chr7_1:68170136-68170155 None:intergenic 50.0%
ATAACCGGGCCCACACTTAA+TGG - chr7_1:68171728-68171747 None:intergenic 50.0%
TGTTCGTGTTGGGACTCCTC+GGG + chr7_1:68169397-68169416 Msa1033150:CDS 55.0%
AGGGGGGAGACTTACAGCAT+AGG - chr7_1:68170419-68170438 None:intergenic 55.0%
AGGACCATTAAGTGTGGGCC+CGG + chr7_1:68171721-68171740 Msa1033150:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 68168941 68171814 68168941 ID=Msa1033150;Name=Msa1033150
chr7_1 mRNA 68168941 68171814 68168941 ID=Msa1033150-mRNA-1;Parent=Msa1033150;Name=Msa1033150-mRNA-1;_AED=0.11;_eAED=0.11;_QI=103|1|1|1|1|1|7|268|394
chr7_1 exon 68168941 68169246 68168941 ID=Msa1033150-mRNA-1:exon:15796;Parent=Msa1033150-mRNA-1
chr7_1 exon 68169356 68169418 68169356 ID=Msa1033150-mRNA-1:exon:15797;Parent=Msa1033150-mRNA-1
chr7_1 exon 68169673 68169789 68169673 ID=Msa1033150-mRNA-1:exon:15798;Parent=Msa1033150-mRNA-1
chr7_1 exon 68169915 68170167 68169915 ID=Msa1033150-mRNA-1:exon:15799;Parent=Msa1033150-mRNA-1
chr7_1 exon 68170265 68170423 68170265 ID=Msa1033150-mRNA-1:exon:15800;Parent=Msa1033150-mRNA-1
chr7_1 exon 68170742 68170893 68170742 ID=Msa1033150-mRNA-1:exon:15801;Parent=Msa1033150-mRNA-1
chr7_1 exon 68171309 68171814 68171309 ID=Msa1033150-mRNA-1:exon:15802;Parent=Msa1033150-mRNA-1
chr7_1 five_prime_UTR 68168941 68169043 68168941 ID=Msa1033150-mRNA-1:five_prime_utr;Parent=Msa1033150-mRNA-1
chr7_1 CDS 68169044 68169246 68169044 ID=Msa1033150-mRNA-1:cds;Parent=Msa1033150-mRNA-1
chr7_1 CDS 68169356 68169418 68169356 ID=Msa1033150-mRNA-1:cds;Parent=Msa1033150-mRNA-1
chr7_1 CDS 68169673 68169789 68169673 ID=Msa1033150-mRNA-1:cds;Parent=Msa1033150-mRNA-1
chr7_1 CDS 68169915 68170167 68169915 ID=Msa1033150-mRNA-1:cds;Parent=Msa1033150-mRNA-1
chr7_1 CDS 68170265 68170423 68170265 ID=Msa1033150-mRNA-1:cds;Parent=Msa1033150-mRNA-1
chr7_1 CDS 68170742 68170893 68170742 ID=Msa1033150-mRNA-1:cds;Parent=Msa1033150-mRNA-1
chr7_1 CDS 68171309 68171546 68171309 ID=Msa1033150-mRNA-1:cds;Parent=Msa1033150-mRNA-1
chr7_1 three_prime_UTR 68171547 68171814 68171547 ID=Msa1033150-mRNA-1:three_prime_utr;Parent=Msa1033150-mRNA-1
Gene Sequence

>Msa1033150

ATGGAAGGAGATAGGTGTAGTACAAGTTTTTTTCAAAGATGCAAGCCTTACATAGCAATGATTTGTCTACAATTTGGTTTTGCTGGTATGAACATAATAACAAAGGTTTCACTCAACCGTGGAATGAGTCACTATGTTCTTGTTGTTTATAGACATGCTTTTGCTACTGCTGTTATTGCTCCATTTGCTATTGTTCTTGAGAGGAAGATAAGGCCAAGGATCACATTTCTTATGTTTATGCAAATGTTCGTGTTGGGACTCCTCGGGCCTGTGATTGATCAGAACCTATACTATGCTGGGTTGAAATTCACTTCCCCAACCTACTCATGTGCTATTAGCAATATTCTCCCAGCAATGACATTTGTCATGGCAGTTATTTTCAGGATGGAGAAATTGGACATAAAAAAATTAAGATGCCAAGTAAAGGTGATTGGAACTGTAATTACAGTTGCTGGGGCCATGGTGATGACATTATACAAAGGACAAGTTATTAATATATTAAGTTCTCAATACATGCATCATCCTAGAAATTATGAACCTGAAAACACTACTGATTCTGGTGAAAAAGATTGGGTTAAAGGTTCTATTCTCCTCATTATTGCCACCTTTGCTTGGGCTTCTTTCTTCATTCTTCAGGCTGTGACATTGAGGAAATACTCAGCTCAACTCTCACTCACAGCTATAGTGTGTTCCTTGGGCACACTTCAATCAATTGCTGTGACTTTTGTTATGGAGCATAAGCCAAATGCTTGGAGCATTGGTTGGGACATGAACTTATTAGCTGCAGCCTATGCTGGTATAATATCATCAGGTCTTACCTACTATGTTCAAGGAATAGTCATGCAAAAGAAAGGGCCAGTTTTTGTCACTGCTTTCAGTCCTTTGATGATGATCATTGTAGCAATTATGGGCACTTTCATCCTTGCTGAAAAATTATATCTTGGAGGTGTTATTGGAGCTATTTTGATCGTAATAGGACTTTACTCAGTTCTATGGGGCAAAAGCAAAGAAAATAAAGAGATTGAAGAAGAGACAATAACTGAGGGAATGAAGTGTTGTGTAGAAAATGGAGTAATATTGGAAACAGTGATTGAAGGTGTTGAAGAAACAAATGATATTGAAATGCAAAAGGGTGAAGCTACTAAAGTTTTGAGGGTAGCAATTATTAGTGTTCCAAAAGTTTAA
Protein sequence

>Msa1033150

MEGDRCSTSFFQRCKPYIAMICLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNILPAMTFVMAVIFRMEKLDIKKLRCQVKVIGTVITVAGAMVMTLYKGQVINILSSQYMHHPRNYEPENTTDSGEKDWVKGSILLIIATFAWASFFILQAVTLRKYSAQLSLTAIVCSLGTLQSIAVTFVMEHKPNAWSIGWDMNLLAAAYAGIISSGLTYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGTFILAEKLYLGGVIGAILIVIGLYSVLWGKSKENKEIEEETITEGMKCCVENGVILETVIEGVEETNDIEMQKGEATKVLRVAIISVPKV*