AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1033210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033210 MtrunA17_Chr7g0255561 97.716 394 8 1 1 394 1 393 0.0 790
Msa1033210 MtrunA17_Chr7g0255581 97.716 394 8 1 1 394 1 393 0.0 790
Msa1033210 MtrunA17_Chr8g0354121 63.710 372 125 5 11 373 9 379 1.05e-169 479
Msa1033210 MtrunA17_Chr3g0081511 58.824 391 152 5 2 388 4 389 4.75e-163 463
Msa1033210 MtrunA17_Chr3g0081421 57.881 387 154 4 1 381 3 386 9.79e-161 457
Msa1033210 MtrunA17_Chr1g0160171 51.124 356 168 2 4 357 3 354 5.99e-128 373
Msa1033210 MtrunA17_Chr3g0114691 47.423 388 194 6 2 383 7 390 1.64e-125 367
Msa1033210 MtrunA17_Chr7g0263101 52.553 333 153 2 6 337 4 332 1.64e-124 364
Msa1033210 MtrunA17_Chr1g0182291 49.859 355 167 4 7 356 7 355 3.18e-122 358
Msa1033210 MtrunA17_Chr3g0114731 47.904 334 168 1 11 344 14 341 5.30e-113 336
Msa1033210 MtrunA17_Chr1g0160181 47.633 338 174 2 8 344 11 346 1.61e-111 332
Msa1033210 MtrunA17_Chr3g0114711 41.598 363 170 4 12 337 11 368 7.09e-105 315
Msa1033210 MtrunA17_Chr3g0114701 46.084 332 176 2 9 339 3 332 1.52e-100 303
Msa1033210 MtrunA17_Chr1g0186601 43.027 337 182 5 11 345 12 340 1.60e-93 284
Msa1033210 MtrunA17_Chr1g0171301 41.761 352 198 4 6 356 7 352 7.01e-93 283
Msa1033210 MtrunA17_Chr1g0186611 41.964 336 187 3 11 345 12 340 4.44e-89 273
Msa1033210 MtrunA17_Chr1g0186571 42.090 335 186 3 12 345 10 337 1.76e-88 271
Msa1033210 MtrunA17_Chr1g0186641 42.090 335 186 4 12 345 10 337 2.43e-88 271
Msa1033210 MtrunA17_Chr1g0186561 42.560 336 186 3 11 345 12 341 1.09e-87 270
Msa1033210 MtrunA17_Chr7g0271561 39.237 367 216 4 16 377 8 372 8.25e-87 268
Msa1033210 MtrunA17_Chr6g0463971 36.620 355 218 4 12 365 13 361 8.48e-85 262
Msa1033210 MtrunA17_Chr3g0142131 39.368 348 202 1 5 343 10 357 6.80e-82 256
Msa1033210 MtrunA17_Chr2g0278561 38.261 345 206 3 1 343 3 342 3.98e-80 251
Msa1033210 MtrunA17_Chr4g0059311 37.462 331 202 2 10 339 6 332 2.30e-79 248
Msa1033210 MtrunA17_Chr2g0278541 38.209 335 199 3 15 343 12 344 4.52e-79 248
Msa1033210 MtrunA17_Chr2g0290611 38.529 340 201 3 12 348 9 343 5.33e-79 248
Msa1033210 MtrunA17_Chr1g0184221 34.670 349 206 2 11 345 12 352 6.89e-79 247
Msa1033210 MtrunA17_Chr1g0155761 38.028 355 206 2 4 344 10 364 1.08e-78 248
Msa1033210 MtrunA17_Chr4g0050881 38.253 332 200 4 15 344 9 337 1.43e-75 238
Msa1033210 MtrunA17_Chr2g0278551 38.053 339 204 2 15 351 12 346 4.17e-75 238
Msa1033210 MtrunA17_Chr3g0129571 34.286 350 215 2 16 350 8 357 4.73e-75 237
Msa1033210 MtrunA17_Chr6g0483401 37.500 336 210 0 24 359 19 354 1.94e-74 236
Msa1033210 MtrunA17_Chr2g0284261 37.117 326 199 3 15 340 8 327 9.16e-73 231
Msa1033210 MtrunA17_Chr3g0129601 33.431 341 214 2 15 349 29 362 4.87e-72 229
Msa1033210 MtrunA17_Chr8g0334761 35.695 367 223 3 16 377 11 369 1.73e-71 228
Msa1033210 MtrunA17_Chr4g0051021 35.942 345 213 4 12 352 11 351 1.08e-70 226
Msa1033210 MtrunA17_Chr4g0050891 37.500 328 194 3 11 332 9 331 1.60e-70 226
Msa1033210 MtrunA17_Chr1g0160111 34.247 365 214 4 24 377 16 365 2.05e-70 226
Msa1033210 MtrunA17_Chr1g0177221 43.254 252 137 2 15 265 18 264 1.55e-69 220
Msa1033210 MtrunA17_Chr2g0332001 36.202 337 209 3 10 345 33 364 2.06e-69 224
Msa1033210 MtrunA17_Chr4g0050941 37.240 384 227 7 11 388 8 383 2.36e-69 223
Msa1033210 MtrunA17_Chr1g0164831 35.000 340 210 4 15 351 3 334 6.36e-68 218
Msa1033210 MtrunA17_Chr3g0129591 34.104 346 220 3 16 356 6 348 2.80e-66 214
Msa1033210 MtrunA17_Chr8g0334751 37.101 345 204 4 16 355 12 348 9.06e-64 208
Msa1033210 MtrunA17_Chr8g0383731 33.233 331 215 2 12 338 2 330 1.13e-62 205
Msa1033210 MtrunA17_Chr5g0413941 35.671 328 205 3 19 345 11 333 3.72e-62 203
Msa1033210 MtrunA17_Chr3g0129581 35.838 346 214 3 16 356 6 348 5.15e-62 203
Msa1033210 MtrunA17_Chr8g0334771 35.417 336 202 3 16 345 11 337 6.88e-62 203
Msa1033210 MtrunA17_Chr3g0126101 34.441 331 208 4 16 344 7 330 1.30e-60 199
Msa1033210 MtrunA17_Chr2g0310441 34.139 331 211 3 16 344 11 336 1.81e-60 199
Msa1033210 MtrunA17_Chr5g0413961 31.402 328 217 2 12 339 11 330 1.52e-59 197
Msa1033210 MtrunA17_Chr1g0150151 31.214 346 229 4 1 344 1 339 2.69e-59 196
Msa1033210 MtrunA17_Chr5g0413921 35.061 328 203 5 20 344 12 332 3.72e-59 195
Msa1033210 MtrunA17_Chr5g0413951 35.404 322 196 5 20 337 12 325 2.56e-58 193
Msa1033210 MtrunA17_Chr7g0227921 34.615 338 206 6 11 344 7 333 1.38e-57 192
Msa1033210 MtrunA17_Chr4g0073241 30.499 341 223 4 16 351 9 340 6.18e-56 188
Msa1033210 MtrunA17_Chr5g0407971 34.718 337 206 4 15 339 11 345 1.56e-55 187
Msa1033210 MtrunA17_Chr4g0050931 32.754 345 184 4 11 349 8 310 2.83e-54 182
Msa1033210 MtrunA17_Chr5g0413931 34.146 328 206 5 20 344 11 331 4.71e-54 182
Msa1033210 MtrunA17_Chr6g0451171 31.967 366 236 7 9 372 6 360 1.19e-53 182
Msa1033210 MtrunA17_Chr5g0408001 34.513 339 208 4 15 341 10 346 1.68e-52 179
Msa1033210 MtrunA17_Chr4g0051001 33.115 305 201 2 12 315 28 330 1.23e-51 176
Msa1033210 MtrunA17_Chr5g0407991 33.918 342 214 2 15 345 9 349 2.38e-51 176
Msa1033210 MtrunA17_Chr6g0451201 32.402 358 230 6 5 362 2 347 2.40e-51 176
Msa1033210 MtrunA17_Chr5g0428881 29.080 337 238 1 10 346 13 348 7.55e-51 175
Msa1033210 MtrunA17_Chr6g0451251 35.455 330 201 5 35 362 32 351 1.48e-50 174
Msa1033210 MtrunA17_Chr5g0408031 33.333 342 212 4 12 339 7 346 1.04e-49 172
Msa1033210 MtrunA17_Chr5g0408041 34.402 343 209 4 15 343 11 351 2.33e-49 171
Msa1033210 MtrunA17_Chr6g0451211 32.647 340 215 6 9 344 6 335 2.04e-48 168
Msa1033210 MtrunA17_Chr5g0441761 28.529 333 228 2 19 351 18 340 1.26e-47 166
Msa1033210 MtrunA17_Chr3g0126091 29.794 339 221 5 16 345 12 342 5.48e-47 164
Msa1033210 MtrunA17_Chr8g0369841 30.060 336 223 2 15 339 9 343 1.45e-45 161
Msa1033210 MtrunA17_Chr1g0211801 32.432 259 170 3 7 265 3 256 2.83e-42 149
Msa1033210 MtrunA17_Chr6g0451261 30.159 315 211 5 5 318 4 310 1.85e-41 155
Msa1033210 MtrunA17_Chr5g0429001 30.357 280 190 2 68 346 8 283 8.72e-40 144
Msa1033210 MtrunA17_Chr3g0084091 31.276 243 164 1 95 337 10 249 1.50e-38 140
Msa1033210 MtrunA17_Chr5g0404811 34.389 221 143 1 123 343 1 219 2.41e-38 138
Msa1033210 MtrunA17_Chr2g0278021 35.023 217 134 3 129 340 1 215 5.70e-33 125
Msa1033210 MtrunA17_Chr6g0451191 31.984 247 156 5 129 373 1 237 9.82e-33 123
Msa1033210 MtrunA17_Chr4g0056081 28.487 337 208 10 19 338 18 338 1.25e-32 125
Msa1033210 MtrunA17_Chr1g0182261 45.714 140 73 3 208 344 78 217 2.26e-32 122
Msa1033210 MtrunA17_Chr1g0182261 40.000 75 45 0 11 85 10 84 2.55e-13 68.9
Msa1033210 MtrunA17_Chr8g0334711 36.139 202 115 4 16 212 11 203 1.63e-31 119
Msa1033210 MtrunA17_Chr5g0399281 27.329 322 228 5 19 338 12 329 4.31e-30 118
Msa1033210 MtrunA17_Chr1g0172881 41.781 146 70 4 123 265 16 149 2.97e-28 108
Msa1033210 MtrunA17_Chr5g0404801 44.444 117 65 0 12 128 4 120 2.23e-25 99.8
Msa1033210 MtrunA17_Chr8g0372571 93.478 46 3 0 244 289 1 46 1.33e-24 95.9
Msa1033210 MtrunA17_Chr2g0278031 42.342 111 64 0 15 125 14 124 3.43e-24 96.7
Msa1033210 MtrunA17_Chr4g0021721 91.304 46 4 0 244 289 1 46 6.03e-24 94.0
Msa1033210 MtrunA17_Chr8g0334721 40.164 122 73 0 229 350 1 122 6.53e-24 97.1
Msa1033210 MtrunA17_Chr1g0177231 51.899 79 38 0 266 344 29 107 3.85e-22 91.3
Msa1033210 MtrunA17_Chr1g0172891 51.250 80 38 1 272 351 13 91 3.77e-20 85.1
Msa1033210 MtrunA17_Chr8g0334731 30.189 212 121 7 16 224 12 199 5.49e-18 81.6
Msa1033210 MtrunA17_Chr4g0050921 32.353 102 69 0 217 318 3 104 5.31e-16 74.3
Msa1033210 MtrunA17_Chr4g0050911 40.449 89 52 1 95 182 11 99 6.51e-16 75.1
Msa1033210 MtrunA17_Chr1g0211811 40.541 74 44 0 267 340 1 74 8.00e-16 72.4
Msa1033210 MtrunA17_Chr6g0451241 52.459 61 27 1 284 344 26 84 1.44e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033210 AT5G07050.1 61.965 397 136 6 1 392 3 389 1.22e-172 488
Msa1033210 AT2G40900.1 53.083 373 162 4 12 382 7 368 3.18e-150 431
Msa1033210 AT3G56620.1 52.941 374 166 3 12 383 7 372 4.14e-140 404
Msa1033210 AT1G21890.1 50.733 341 163 1 15 350 10 350 3.15e-128 374
Msa1033210 AT4G08300.1 49.462 372 173 4 12 373 7 373 1.42e-124 365
Msa1033210 AT2G37460.1 50.588 340 156 3 12 345 11 344 2.93e-122 359
Msa1033210 AT1G44800.1 48.266 346 174 3 12 356 7 348 3.85e-121 356
Msa1033210 AT2G39510.1 47.632 359 182 3 15 372 7 360 1.62e-120 354
Msa1033210 AT1G21890.2 52.288 306 141 1 15 315 10 315 8.09e-115 339
Msa1033210 AT4G08290.1 46.588 337 175 2 1 337 1 332 1.14e-112 335
Msa1033210 AT5G13670.1 45.317 331 174 4 11 338 3 329 1.40e-102 308
Msa1033210 AT2G37450.2 42.941 340 166 3 12 350 5 317 4.00e-89 273
Msa1033210 AT1G09380.1 40.439 319 190 0 16 334 8 326 9.84e-86 265
Msa1033210 AT1G75500.1 37.396 361 217 4 12 365 16 374 2.08e-79 249
Msa1033210 AT1G75500.2 37.396 361 217 4 12 365 16 374 2.08e-79 249
Msa1033210 AT4G08290.2 42.803 264 146 2 1 264 1 259 1.30e-77 241
Msa1033210 AT3G18200.2 38.988 336 195 4 12 345 31 358 5.69e-77 243
Msa1033210 AT3G53210.1 37.500 336 201 2 12 344 6 335 5.41e-73 233
Msa1033210 AT5G64700.1 34.821 336 214 3 15 346 7 341 2.12e-72 231
Msa1033210 AT3G30340.1 36.000 325 205 1 15 339 10 331 2.30e-70 225
Msa1033210 AT1G43650.1 36.047 344 200 4 15 346 6 341 1.68e-67 218
Msa1033210 AT4G30420.2 35.311 354 207 6 15 356 8 351 7.23e-67 217
Msa1033210 AT1G25270.1 36.196 326 206 1 15 340 2 325 4.17e-66 214
Msa1033210 AT4G30420.1 35.362 345 213 4 18 356 1 341 3.96e-65 212
Msa1033210 AT2G37450.3 44.958 238 124 2 101 337 1 232 1.80e-64 207
Msa1033210 AT1G01070.1 34.278 353 224 4 1 351 1 347 1.70e-61 202
Msa1033210 AT1G68170.2 33.634 333 216 2 11 341 8 337 3.53e-56 189
Msa1033210 AT4G01440.1 31.343 335 218 2 16 346 10 336 5.91e-56 188
Msa1033210 AT1G68170.1 34.043 329 212 2 15 341 2 327 8.06e-56 187
Msa1033210 AT1G11450.3 32.258 341 224 4 12 351 12 346 3.11e-55 186
Msa1033210 AT4G28040.1 32.036 334 204 7 12 340 4 319 5.51e-55 185
Msa1033210 AT4G28040.5 32.036 334 204 7 12 340 4 319 5.51e-55 185
Msa1033210 AT4G28040.3 32.036 334 204 7 12 340 4 319 5.51e-55 185
Msa1033210 AT4G28040.4 32.036 334 204 7 12 340 4 319 5.51e-55 185
Msa1033210 AT4G28040.2 32.036 334 204 7 12 340 4 319 5.51e-55 185
Msa1033210 AT5G40240.1 31.454 337 227 4 4 338 7 341 9.03e-55 185
Msa1033210 AT5G40240.3 31.454 337 227 4 4 338 7 341 9.03e-55 185
Msa1033210 AT5G40240.2 31.765 340 227 5 2 338 18 355 1.06e-54 185
Msa1033210 AT5G40210.1 33.739 329 182 6 19 339 16 316 1.53e-54 184
Msa1033210 AT1G11460.1 33.435 329 210 3 12 337 12 334 1.54e-54 184
Msa1033210 AT5G40230.1 31.487 343 223 6 3 339 7 343 8.24e-53 180
Msa1033210 AT2G37450.1 41.964 224 123 2 128 350 61 278 6.09e-52 176
Msa1033210 AT2G37450.1 54.386 57 26 0 12 68 5 61 4.49e-13 69.7
Msa1033210 AT4G01430.1 30.588 340 230 4 12 348 5 341 7.42e-51 175
Msa1033210 AT3G53210.2 36.328 256 154 2 92 344 29 278 8.21e-51 173
Msa1033210 AT3G28050.1 30.994 342 218 8 10 345 5 334 9.77e-50 172
Msa1033210 AT5G45370.1 33.333 321 200 2 19 339 23 329 1.78e-49 171
Msa1033210 AT3G45870.1 33.846 325 207 3 15 332 11 334 2.66e-49 171
Msa1033210 AT1G01070.2 34.932 292 182 4 62 351 15 300 3.12e-49 169
Msa1033210 AT4G01440.3 30.921 304 198 2 16 315 10 305 3.31e-49 169
Msa1033210 AT1G11450.5 33.333 303 195 4 50 351 6 302 5.67e-49 168
Msa1033210 AT5G45370.2 32.229 332 213 2 19 339 23 353 2.22e-48 169
Msa1033210 AT5G45370.4 32.229 332 213 2 19 339 23 353 2.22e-48 169
Msa1033210 AT1G70260.1 29.290 338 227 3 16 345 12 345 3.00e-48 168
Msa1033210 AT3G53210.3 35.918 245 148 2 12 253 6 244 1.85e-47 163
Msa1033210 AT1G11450.2 33.000 300 194 4 53 351 2 295 2.94e-47 163
Msa1033210 AT3G18200.1 38.136 236 136 4 112 345 1 228 4.50e-47 161
Msa1033210 AT3G28130.2 32.047 337 211 7 19 345 16 344 8.68e-47 164
Msa1033210 AT3G28100.1 31.378 341 219 7 7 340 4 336 1.49e-46 163
Msa1033210 AT4G19185.1 32.635 334 213 2 17 339 22 354 1.59e-46 164
Msa1033210 AT3G30340.2 34.263 251 162 1 15 265 10 257 4.76e-46 160
Msa1033210 AT5G64700.2 32.549 255 167 3 15 265 7 260 9.71e-46 158
Msa1033210 AT4G15540.1 30.792 341 219 4 1 339 1 326 1.13e-45 160
Msa1033210 AT4G15540.2 30.792 341 219 4 1 339 1 326 1.13e-45 160
Msa1033210 AT1G11450.4 30.820 305 205 3 12 315 12 311 7.15e-45 157
Msa1033210 AT3G28070.2 35.102 245 153 4 98 340 7 247 2.26e-44 155
Msa1033210 AT3G28070.1 35.102 245 153 4 98 340 99 339 2.22e-43 155
Msa1033210 AT3G45870.8 33.117 308 198 3 15 315 11 317 4.24e-43 153
Msa1033210 AT3G28130.5 34.783 253 157 4 98 345 9 258 5.48e-43 151
Msa1033210 AT3G28130.1 34.783 253 157 4 98 345 9 258 5.48e-43 151
Msa1033210 AT5G47470.1 31.515 330 210 7 19 343 33 351 6.94e-42 151
Msa1033210 AT5G47470.2 31.515 330 210 7 19 343 61 379 1.05e-41 151
Msa1033210 AT4G01430.2 30.945 307 206 4 12 315 5 308 1.11e-41 149
Msa1033210 AT5G47470.3 31.515 330 210 7 19 343 61 379 1.33e-41 150
Msa1033210 AT4G24980.1 29.773 309 147 5 30 338 1 239 3.09e-41 147
Msa1033210 AT3G28080.5 36.475 244 147 6 100 340 9 247 1.67e-40 145
Msa1033210 AT3G28080.7 36.475 244 147 6 100 340 9 247 1.67e-40 145
Msa1033210 AT3G28080.8 36.475 244 147 6 100 340 9 247 1.67e-40 145
Msa1033210 AT3G28080.6 36.475 244 147 6 100 340 9 247 1.67e-40 145
Msa1033210 AT3G28080.1 32.622 328 207 9 19 340 17 336 1.90e-40 147
Msa1033210 AT3G28080.2 36.475 244 147 6 100 340 90 328 1.27e-39 144
Msa1033210 AT4G01440.4 31.890 254 161 2 16 265 10 255 1.49e-39 142
Msa1033210 AT1G43650.2 32.669 251 160 3 15 264 6 248 6.59e-39 140
Msa1033210 AT4G01450.2 31.875 320 201 3 28 342 21 328 1.22e-37 139
Msa1033210 AT3G45870.9 34.146 246 155 2 15 253 11 256 5.85e-36 133
Msa1033210 AT4G01450.1 30.375 293 187 3 28 315 21 301 9.04e-36 134
Msa1033210 AT1G11450.1 31.274 259 171 3 94 351 2 254 1.56e-35 131
Msa1033210 AT4G19185.2 31.395 258 165 2 93 339 20 276 2.11e-35 132
Msa1033210 AT1G60050.1 28.080 349 223 6 16 348 13 349 9.89e-35 132
Msa1033210 AT4G01440.5 30.342 234 151 2 117 346 3 228 3.37e-34 127
Msa1033210 AT4G01440.2 30.342 234 151 2 117 346 3 228 3.37e-34 127
Msa1033210 AT4G16620.1 30.921 304 197 7 46 343 41 337 9.20e-33 126
Msa1033210 AT4G01450.4 32.751 229 137 3 28 251 21 237 1.69e-32 123
Msa1033210 AT3G28070.3 33.182 220 141 4 98 315 99 314 2.01e-32 124
Msa1033210 AT4G01450.3 33.491 212 124 3 28 234 21 220 3.15e-30 117
Msa1033210 AT5G45370.6 30.677 251 162 2 100 339 2 251 3.72e-30 117
Msa1033210 AT5G45370.5 30.677 251 162 2 100 339 2 251 3.72e-30 117
Msa1033210 AT3G28070.5 32.243 214 139 4 129 340 1 210 1.19e-29 115
Msa1033210 AT3G28130.3 32.432 222 142 4 129 345 1 219 2.54e-29 114
Msa1033210 AT3G28080.3 28.528 326 169 8 19 340 17 282 1.85e-27 110
Msa1033210 AT3G28080.4 30.992 242 109 5 100 340 9 193 2.72e-27 108
Msa1033210 AT3G28080.9 33.953 215 134 6 129 340 1 210 8.06e-27 107
Msa1033210 AT3G28100.3 30.645 248 159 5 19 260 17 257 1.80e-26 107
Msa1033210 AT3G45870.5 32.547 212 135 3 128 332 49 259 1.65e-25 105
Msa1033210 AT3G28130.4 29.435 248 162 5 19 260 16 256 5.57e-24 100
Msa1033210 AT4G16620.4 30.364 247 161 5 101 343 1 240 1.53e-23 99.0
Msa1033210 AT4G16620.2 30.364 247 161 5 101 343 1 240 1.53e-23 99.0
Msa1033210 AT3G28100.2 32.663 199 122 4 19 212 17 208 4.14e-21 92.0
Msa1033210 AT5G45370.3 27.984 243 161 3 110 339 52 293 1.08e-20 92.4
Msa1033210 AT3G28130.6 31.658 199 124 4 19 212 16 207 3.70e-20 88.6
Msa1033210 AT4G01430.3 27.536 207 145 3 144 348 1 204 6.17e-20 88.2
Msa1033210 AT4G16620.3 29.208 202 135 4 46 245 41 236 1.20e-19 88.6
Msa1033210 AT3G45870.6 31.282 195 126 3 128 315 49 242 1.28e-19 87.8
Msa1033210 AT3G45870.7 31.282 195 126 3 128 315 49 242 1.28e-19 87.8
Msa1033210 AT3G45870.2 33.333 147 97 1 186 332 38 183 2.22e-16 78.2
Msa1033210 AT3G45870.4 32.061 131 82 2 130 253 4 134 1.81e-12 65.5
Msa1033210 AT3G45870.3 30.128 156 99 3 105 253 29 181 2.46e-12 66.2
Msa1033210 AT3G28060.1 28.571 154 87 5 169 315 17 154 2.69e-12 64.7

Find 117 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGTTTAAGATTGAATT+TGG 0.143919 7_1:+68244133 None:intergenic
CATATCTTTCATGTGAAAAT+TGG 0.163457 7_1:-68243899 Msa1033210:three_prime_UTR
GTAGACTATTGGAGGATTTA+AGG 0.168844 7_1:-68244207 Msa1033210:three_prime_UTR
TATCTACATGCTTAAACTTT+TGG 0.196211 7_1:+68244403 None:intergenic
GGAATTTAGGATGGAGAAAT+TGG 0.206523 7_1:-68246125 Msa1033210:intron
GGCTTCTTTCTTCATCCTTC+AGG 0.230455 7_1:-68245885 Msa1033210:intron
TTAAGCATGTAGATATTATT+AGG 0.232966 7_1:-68244395 Msa1033210:exon
ATGATCTTGAACTGATTCTT+TGG 0.233434 7_1:+68244065 None:intergenic
GGTTGAGCGTTAACGAAAAT+TGG 0.237703 7_1:-68244322 Msa1033210:three_prime_UTR
GCAATGATTTCTCTACAATT+TGG 0.240624 7_1:-68246930 Msa1033210:CDS
GATGATCATTGTCGCAATTA+TGG 0.247539 7_1:-68245122 Msa1033210:CDS
ATTTGTGACTGCAGTGTTAT+TGG 0.252494 7_1:-68244643 Msa1033210:intron
CCTGAAAACACTACTGATTC+TGG 0.323745 7_1:-68245962 Msa1033210:CDS
TAGGACTTTACTCAGTTCTA+TGG 0.324315 7_1:-68244603 Msa1033210:CDS
AATGAAGATAAAATTTGAAT+TGG 0.328094 7_1:-68244099 Msa1033210:three_prime_UTR
GGAACTGTAATTACAGTTGC+TGG 0.333568 7_1:-68246067 Msa1033210:CDS
AAATGCAGGCTGTGACATTA+AGG 0.337786 7_1:-68245780 Msa1033210:intron
TCATAATTGCCACCTTTGCT+TGG 0.345790 7_1:-68245907 Msa1033210:CDS
ATGTTCGTGTTGGGACTTCT+CGG 0.352905 7_1:-68246629 Msa1033210:CDS
ATGTGCCTCGTTCAAACTAT+AGG 0.353351 7_1:+68243924 None:intergenic
GTGAAGCTACTAAAGTGTTA+AGG 0.367933 7_1:-68244444 Msa1033210:CDS
CAACCAATGCTCCAAGCATT+TGG 0.368276 7_1:+68245667 None:intergenic
TGTAGAAAATGGAGTAATAT+TGG 0.373183 7_1:-68244518 Msa1033210:CDS
CATAATTGCCACCTTTGCTT+GGG 0.374698 7_1:-68245906 Msa1033210:CDS
ATGAAGTGTTGTGTAGAAAA+TGG 0.377896 7_1:-68244529 Msa1033210:CDS
GGTGAAAAGGATTGGGTTGA+AGG 0.379275 7_1:-68245941 Msa1033210:CDS
CTGATTCTGGTGAAAAGGAT+TGG 0.390193 7_1:-68245949 Msa1033210:CDS
CACTACTGATTCTGGTGAAA+AGG 0.391411 7_1:-68245954 Msa1033210:CDS
ATGATCATTGTCGCAATTAT+GGG 0.399537 7_1:-68245121 Msa1033210:CDS
ACGGAAGAGATACATCGTTT+TGG 0.402684 7_1:-68244268 Msa1033210:three_prime_UTR
AGAGAAATCATTGCTATGTA+TGG 0.403687 7_1:+68246939 None:intergenic
TAATAGCACATGAGTAGGTT+GGG 0.409987 7_1:+68246310 None:intergenic
CGTTAACGAAAATTGGTTAT+CGG 0.417126 7_1:-68244315 Msa1033210:three_prime_UTR
ATGTAGATATTATTAGGATT+AGG 0.417520 7_1:-68244389 Msa1033210:three_prime_UTR
CAGTTCCAATCACCTTTACT+TGG 0.422944 7_1:+68246083 None:intergenic
AAATGATATTGAAATGCAAA+AGG 0.427377 7_1:-68244467 Msa1033210:CDS
ATGAGAACGATAGATTTGTT+TGG 0.435671 7_1:-68244181 Msa1033210:three_prime_UTR
AAGCCAAATGCTTGGAGCAT+TGG 0.441831 7_1:-68245670 Msa1033210:CDS
AGATGCCAAGTAAAGGTGAT+TGG 0.445654 7_1:-68246088 Msa1033210:CDS
GCCATGACAAATGTCATTGC+TGG 0.449617 7_1:+68246276 None:intergenic
TGGTAGAGAGAATTGATAGA+AGG 0.452079 7_1:-68244343 Msa1033210:three_prime_UTR
TAAAATTTGAATTGGAGGGC+AGG 0.452269 7_1:-68244091 Msa1033210:three_prime_UTR
AACATAAGAAATGTGATCCT+TGG 0.453298 7_1:+68246659 None:intergenic
TGTGCCTCGTTCAAACTATA+GGG 0.455048 7_1:+68243925 None:intergenic
TGAAGCTACTAAAGTGTTAA+GGG 0.455287 7_1:-68244443 Msa1033210:CDS
AGGACTTTACTCAGTTCTAT+GGG 0.455974 7_1:-68244602 Msa1033210:CDS
GATCAGAACCTATACTATGC+TGG 0.460553 7_1:-68246348 Msa1033210:CDS
CACAGCCATAGTGTGTTCCT+TGG 0.460675 7_1:-68245734 Msa1033210:CDS
TTGTCATTGGCAGGAAGATA+AGG 0.461420 7_1:-68246682 Msa1033210:intron
TGTGCCCAAGGAACACACTA+TGG 0.466969 7_1:+68245729 None:intergenic
CAAATGCTTGGAGCATTGGT+TGG 0.475581 7_1:-68245666 Msa1033210:CDS
ATTCAATCTTAAACTTGAGA+TGG 0.479498 7_1:-68244129 Msa1033210:three_prime_UTR
CTCTCAAGAACAATAGCAAA+TGG 0.479507 7_1:+68246804 None:intergenic
GGAATAGTCATGCAAAAGAA+AGG 0.480743 7_1:-68245178 Msa1033210:CDS
TGATTCTGGTGAAAAGGATT+GGG 0.481402 7_1:-68245948 Msa1033210:CDS
ATTTATTGTACTAATAAACT+AGG 0.481941 7_1:+68247035 None:intergenic
AAACTATCATGAACGTACTT+AGG 0.483390 7_1:-68244292 Msa1033210:three_prime_UTR
AAATGCTTGGAGCATTGGTT+GGG 0.486794 7_1:-68245665 Msa1033210:CDS
TGTTCGTGTTGGGACTTCTC+GGG 0.488097 7_1:-68246628 Msa1033210:intron
ATTTCAACCCAGCATAGTAT+AGG 0.492882 7_1:+68246340 None:intergenic
CTAATAGCACATGAGTAGGT+TGG 0.498278 7_1:+68246309 None:intergenic
GAAGATAAAATTTGAATTGG+AGG 0.501051 7_1:-68244096 Msa1033210:three_prime_UTR
GAACAGGGTATAATATCATC+AGG 0.501590 7_1:-68245220 Msa1033210:intron
CATTTGCTATTGTTCTTGAG+AGG 0.504801 7_1:-68246803 Msa1033210:intron
GAACTGTAATTACAGTTGCT+GGG 0.505303 7_1:-68246066 Msa1033210:CDS
GGTCTGACCTACTATGTTCA+AGG 0.506224 7_1:-68245199 Msa1033210:CDS
TAGGCGGTATAGTAGACTAT+TGG 0.508889 7_1:-68244218 Msa1033210:three_prime_UTR
TTTATGCAAATGTTCGTGTT+GGG 0.509361 7_1:-68246638 Msa1033210:CDS
ACAGCCATAGTGTGTTCCTT+GGG 0.511265 7_1:-68245733 Msa1033210:CDS
AAAATTTGAATTGGAGGGCA+GGG 0.512071 7_1:-68244090 Msa1033210:three_prime_UTR
AAGATAAAATTTGAATTGGA+GGG 0.512076 7_1:-68244095 Msa1033210:three_prime_UTR
TCAGAATTAATGTGTTGGCT+AGG 0.518698 7_1:-68244007 Msa1033210:three_prime_UTR
AAAATTAAGATGCCAAGTAA+AGG 0.523206 7_1:-68246095 Msa1033210:CDS
AGATATTATTAGGATTAGGA+AGG 0.528756 7_1:-68244385 Msa1033210:three_prime_UTR
AAGCAAAGGTGGCAATTATG+AGG 0.530606 7_1:+68245909 None:intergenic
ATCAGAACCTATACTATGCT+GGG 0.534041 7_1:-68246347 Msa1033210:CDS
GTTTATGCAAATGTTCGTGT+TGG 0.539764 7_1:-68246639 Msa1033210:CDS
AATGATATTGAAATGCAAAA+GGG 0.540111 7_1:-68244466 Msa1033210:CDS
GAATAGTCATGCAAAAGAAA+GGG 0.552823 7_1:-68245177 Msa1033210:CDS
TATTATTAGGATTAGGAAGG+GGG 0.553611 7_1:-68244382 Msa1033210:three_prime_UTR
ATATTATTAGGATTAGGAAG+GGG 0.554728 7_1:-68244383 Msa1033210:three_prime_UTR
GTGGAGCCGTGGACCGTGGT+AGG 0.556187 7_1:-68244237 Msa1033210:three_prime_UTR
CCCAGCAATGACATTTGTCA+TGG 0.557417 7_1:-68246277 Msa1033210:CDS
GCGGTATAGTAGACTATTGG+AGG 0.558021 7_1:-68244215 Msa1033210:three_prime_UTR
GATATTATTAGGATTAGGAA+GGG 0.565642 7_1:-68244384 Msa1033210:three_prime_UTR
TGGAGCATAAGCCAAATGCT+TGG 0.566635 7_1:-68245678 Msa1033210:CDS
AATTACAGTTGCTGGGGCCA+TGG 0.571553 7_1:-68246059 Msa1033210:CDS
ATATTGGAAACAGTGATTGA+AGG 0.577888 7_1:-68244502 Msa1033210:CDS
GAAAGAAGCCCAAGCAAAGG+TGG 0.577910 7_1:+68245898 None:intergenic
TATGGTCAGAATTAATGTGT+TGG 0.585596 7_1:-68244012 Msa1033210:three_prime_UTR
AATTGATTGAAGTGTGCCCA+AGG 0.589839 7_1:+68245717 None:intergenic
GACTATTCCTTGAACATAGT+AGG 0.590965 7_1:+68245192 None:intergenic
AATAGCACATGAGTAGGTTG+GGG 0.594825 7_1:+68246311 None:intergenic
TATAGGTTCTGATCAATCAC+AGG 0.594938 7_1:+68246357 None:intergenic
CAGAATTAATGTGTTGGCTA+GGG 0.595071 7_1:-68244006 Msa1033210:three_prime_UTR
ATTGCTAATAGCACATGAGT+AGG 0.596686 7_1:+68246305 None:intergenic
AACTGTAATTACAGTTGCTG+GGG 0.596912 7_1:-68246065 Msa1033210:CDS
GAGCCGTGGACCGTGGTAGG+CGG 0.606056 7_1:-68244234 Msa1033210:three_prime_UTR
GCGACAATGATCATCATCAA+AGG 0.607473 7_1:+68245130 None:intergenic
TGGAGTGAAGAGTGGAGCCG+TGG 0.608169 7_1:-68244248 Msa1033210:three_prime_UTR
CCATGACAAATGTCATTGCT+GGG 0.609642 7_1:+68246277 None:intergenic
GTCTACTATACCGCCTACCA+CGG 0.612154 7_1:+68244224 None:intergenic
TGGTATGAACATAATAACAA+AGG 0.615728 7_1:-68246901 Msa1033210:CDS
ATCATGAACGTACTTAGGAA+CGG 0.619509 7_1:-68244287 Msa1033210:three_prime_UTR
AAGAGTGGAGCCGTGGACCG+TGG 0.633950 7_1:-68244241 Msa1033210:three_prime_UTR
TGAAGAAGAGACAATAACTG+AGG 0.638287 7_1:-68244554 Msa1033210:CDS
GAAGAAGAGACAATAACTGA+GGG 0.639766 7_1:-68244553 Msa1033210:CDS
GAACATAGTGACTCATTCCA+CGG 0.650720 7_1:+68246868 None:intergenic
GAAGAAAGAAGCCCAAGCAA+AGG 0.650903 7_1:+68245895 None:intergenic
TTGGCAGGAAGATAAGGCCA+AGG 0.651054 7_1:-68246676 Msa1033210:intron
ATACCGCCTACCACGGTCCA+CGG 0.656561 7_1:+68244231 None:intergenic
TTTGTATAATGTCATCACCA+TGG 0.663821 7_1:+68246042 None:intergenic
GGACTTTACTCAGTTCTATG+GGG 0.681459 7_1:-68244601 Msa1033210:CDS
ACAAAGGTTTCACTCAACCG+TGG 0.684285 7_1:-68246885 Msa1033210:CDS
GGGGTCGTTCTAGCTCAGCA+TGG 0.693882 7_1:-68244363 Msa1033210:three_prime_UTR
ATGGTGATGACATTATACAA+AGG 0.703249 7_1:-68246040 Msa1033210:CDS
TTAACCCTATAGTTTGAACG+AGG 0.715011 7_1:-68243929 Msa1033210:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTTTATTTTT+TGG - chr7_1:68245967-68245986 Msa1033210:CDS 0.0%
!!! TAAATATTAATTTGGTTATT+GGG + chr7_1:68244758-68244777 None:intergenic 10.0%
!!! ATAAATATTAATTTGGTTAT+TGG + chr7_1:68244759-68244778 None:intergenic 10.0%
!! AAATAAAATACTTTATGATA+TGG + chr7_1:68245926-68245945 None:intergenic 10.0%
!!! TTTTTTTTTCTACTTTTTTT+GGG + chr7_1:68246223-68246242 None:intergenic 10.0%
!!! ATTTTTTTTTCTACTTTTTT+TGG + chr7_1:68246224-68246243 None:intergenic 10.0%
!! ATTTATTGTACTAATAAACT+AGG + chr7_1:68243947-68243966 None:intergenic 15.0%
!!! TGATTGCTAATTTATTTTTT+TGG + chr7_1:68245496-68245515 None:intergenic 15.0%
!! ATCAACAAACATAAAAAATA+GGG + chr7_1:68245702-68245721 None:intergenic 15.0%
!!! ATAAAATACTTTTTTATTGG+TGG + chr7_1:68245953-68245972 None:intergenic 15.0%
!! AATGAAGATAAAATTTGAAT+TGG - chr7_1:68246880-68246899 Msa1033210:CDS 15.0%
!! TTATCATTAAGAATGAATGA+TGG + chr7_1:68244205-68244224 None:intergenic 20.0%
!!! AACAAATTTTAGAACATTGT+TGG + chr7_1:68244587-68244606 None:intergenic 20.0%
!!! AATTTGTTATTGTTTGTATC+AGG - chr7_1:68244599-68244618 Msa1033210:CDS 20.0%
!!! TATGCTTTATTTTGGAATTT+AGG - chr7_1:68244841-68244860 Msa1033210:intron 20.0%
!!! TTTTTTGGTAGTGATTATTA+AGG + chr7_1:68245481-68245500 None:intergenic 20.0%
!!! AACATAAAAAATAGGGTTTT+GGG + chr7_1:68245695-68245714 None:intergenic 20.0%
!!! AAACATAAAAAATAGGGTTT+TGG + chr7_1:68245696-68245715 None:intergenic 20.0%
!! CATCAACAAACATAAAAAAT+AGG + chr7_1:68245703-68245722 None:intergenic 20.0%
!!! TTTGTTGATGAATTTATTGA+GGG - chr7_1:68245713-68245732 Msa1033210:CDS 20.0%
!!! CAAGGTTTTAATTATATTTG+TGG + chr7_1:68246102-68246121 None:intergenic 20.0%
!!! ATTTGATATTTTCATTGGAT+TGG + chr7_1:68246126-68246145 None:intergenic 20.0%
!!! CTAGAATTTGATATTTTCAT+TGG + chr7_1:68246131-68246150 None:intergenic 20.0%
!! AAATGATATTGAAATGCAAA+AGG - chr7_1:68246512-68246531 Msa1033210:intron 20.0%
!! AATGATATTGAAATGCAAAA+GGG - chr7_1:68246513-68246532 Msa1033210:intron 20.0%
!! TTAAGCATGTAGATATTATT+AGG - chr7_1:68246584-68246603 Msa1033210:intron 20.0%
!! ATGTAGATATTATTAGGATT+AGG - chr7_1:68246590-68246609 Msa1033210:intron 20.0%
!! AAGATAAAATTTGAATTGGA+GGG - chr7_1:68246884-68246903 Msa1033210:CDS 20.0%
!!! TCATTTTCTTTTTCAAAGTA+TGG - chr7_1:68246949-68246968 Msa1033210:CDS 20.0%
!! ATTTTTCTTCTTCTCTCTAT+TGG + chr7_1:68243977-68243996 None:intergenic 25.0%
! AATAGAGAGAAGAAGAAAAA+TGG - chr7_1:68243976-68243995 Msa1033210:three_prime_UTR 25.0%
! TGGTATGAACATAATAACAA+AGG - chr7_1:68244078-68244097 Msa1033210:three_prime_UTR 25.0%
! TTGTAAGCCATTATCTATAA+CGG + chr7_1:68244475-68244494 None:intergenic 25.0%
!!! GTGTTACATATGCTTTATTT+TGG - chr7_1:68244833-68244852 Msa1033210:intron 25.0%
!!! CTTTATTTTGGAATTTAGGA+TGG - chr7_1:68244845-68244864 Msa1033210:intron 25.0%
! AAAATTAAGATGCCAAGTAA+AGG - chr7_1:68244884-68244903 Msa1033210:intron 25.0%
!!! TTTTCAGGTTCATAATTTCT+AGG + chr7_1:68245005-68245024 None:intergenic 25.0%
! TTTAACAATTACATACCTGA+AGG + chr7_1:68245112-68245131 None:intergenic 25.0%
!! AATTTTGTGTGATTAAATGC+AGG - chr7_1:68245185-68245204 Msa1033210:CDS 25.0%
! AAGTTAAAACTTTGATAAGG+GGG + chr7_1:68245379-68245398 None:intergenic 25.0%
! CAAGTTAAAACTTTGATAAG+GGG + chr7_1:68245380-68245399 None:intergenic 25.0%
! GCAAGTTAAAACTTTGATAA+GGG + chr7_1:68245381-68245400 None:intergenic 25.0%
! TGCAAGTTAAAACTTTGATA+AGG + chr7_1:68245382-68245401 None:intergenic 25.0%
! TTAGCAATCAAAATTAGTGA+CGG - chr7_1:68245506-68245525 Msa1033210:intron 25.0%
! GTTAAAAAAACTTGAAGTTC+CGG - chr7_1:68245637-68245656 Msa1033210:CDS 25.0%
!! GTTTGTTGATGAATTTATTG+AGG - chr7_1:68245712-68245731 Msa1033210:CDS 25.0%
!!! GAATTTATTGAGGGTATTAA+TGG - chr7_1:68245722-68245741 Msa1033210:CDS 25.0%
!! GTATTAATGGATGTAAACTT+TGG - chr7_1:68245735-68245754 Msa1033210:CDS 25.0%
!! CAAGATATAATTTTTCTGCA+AGG + chr7_1:68245893-68245912 None:intergenic 25.0%
! CTTGCAGAAAAATTATATCT+TGG - chr7_1:68245891-68245910 Msa1033210:CDS 25.0%
! CAGAAAAATTATATCTTGGA+GGG - chr7_1:68245895-68245914 Msa1033210:CDS 25.0%
! ATTCTAGTGAGAAATAAACT+TGG - chr7_1:68246144-68246163 Msa1033210:intron 25.0%
! TGTAGAAAATGGAGTAATAT+TGG - chr7_1:68246461-68246480 Msa1033210:intron 25.0%
!! TATCTACATGCTTAAACTTT+TGG + chr7_1:68246579-68246598 None:intergenic 25.0%
! AGATATTATTAGGATTAGGA+AGG - chr7_1:68246594-68246613 Msa1033210:intron 25.0%
! GATATTATTAGGATTAGGAA+GGG - chr7_1:68246595-68246614 Msa1033210:intron 25.0%
! ATATTATTAGGATTAGGAAG+GGG - chr7_1:68246596-68246615 Msa1033210:intron 25.0%
!! CTCAAGTTTAAGATTGAATT+TGG + chr7_1:68246849-68246868 None:intergenic 25.0%
! ATTCAATCTTAAACTTGAGA+TGG - chr7_1:68246850-68246869 Msa1033210:CDS 25.0%
! GAAGATAAAATTTGAATTGG+AGG - chr7_1:68246883-68246902 Msa1033210:CDS 25.0%
!!! AGAAAAAAGCTCATTTTTGT+AGG - chr7_1:68247019-68247038 Msa1033210:five_prime_UTR 25.0%
! CATATCTTTCATGTGAAAAT+TGG - chr7_1:68247080-68247099 Msa1033210:five_prime_UTR 25.0%
!!! GTAGTACAAGTTTTTTTCAG+AGG - chr7_1:68244011-68244030 Msa1033210:three_prime_UTR 30.0%
AGAGAAATCATTGCTATGTA+TGG + chr7_1:68244043-68244062 None:intergenic 30.0%
GCAATGATTTCTCTACAATT+TGG - chr7_1:68244049-68244068 Msa1033210:three_prime_UTR 30.0%
AACATAAGAAATGTGATCCT+TGG + chr7_1:68244323-68244342 None:intergenic 30.0%
TTTATGCAAATGTTCGTGTT+GGG - chr7_1:68244341-68244360 Msa1033210:three_prime_UTR 30.0%
AGAATTACGAGTATTCTTGA+AGG - chr7_1:68244393-68244412 Msa1033210:three_prime_UTR 30.0%
TGTAAGAAATTTCGACTGTA+GGG + chr7_1:68244428-68244447 None:intergenic 30.0%
TTGTAAGAAATTTCGACTGT+AGG + chr7_1:68244429-68244448 None:intergenic 30.0%
ATCTTGACCGTTATAGATAA+TGG - chr7_1:68244465-68244484 Msa1033210:CDS 30.0%
TTTGTATAATGTCATCACCA+TGG + chr7_1:68244940-68244959 None:intergenic 30.0%
! ATGGTGATGACATTATACAA+AGG - chr7_1:68244939-68244958 Msa1033210:intron 30.0%
! AATTGCTGTGACTTTTGTTA+TGG - chr7_1:68245281-68245300 Msa1033210:intron 30.0%
!! TTTGGTAGTGATTATTAAGG+TGG + chr7_1:68245478-68245497 None:intergenic 30.0%
TTTGCGATAACAAATTAGCA+AGG + chr7_1:68245545-68245564 None:intergenic 30.0%
GAATAGTCATGCAAAAGAAA+GGG - chr7_1:68245802-68245821 Msa1033210:intron 30.0%
ATGATCATTGTCGCAATTAT+GGG - chr7_1:68245858-68245877 Msa1033210:intron 30.0%
GCAGAAAAATTATATCTTGG+AGG - chr7_1:68245894-68245913 Msa1033210:CDS 30.0%
CAGCATCACAATTATAATTG+TGG + chr7_1:68246043-68246062 None:intergenic 30.0%
!! TATTTTCATTGGATTGGACA+AGG + chr7_1:68246120-68246139 None:intergenic 30.0%
! AAAAAAGCACAACATGTGAA+CGG - chr7_1:68246274-68246293 Msa1033210:CDS 30.0%
!! ATGAAGTGTTGTGTAGAAAA+TGG - chr7_1:68246450-68246469 Msa1033210:intron 30.0%
ATATTGGAAACAGTGATTGA+AGG - chr7_1:68246477-68246496 Msa1033210:intron 30.0%
! TGAAGCTACTAAAGTGTTAA+GGG - chr7_1:68246536-68246555 Msa1033210:intron 30.0%
TATTATTAGGATTAGGAAGG+GGG - chr7_1:68246597-68246616 Msa1033210:intron 30.0%
CGTTAACGAAAATTGGTTAT+CGG - chr7_1:68246664-68246683 Msa1033210:CDS 30.0%
AAACTATCATGAACGTACTT+AGG - chr7_1:68246687-68246706 Msa1033210:intron 30.0%
! ATGAGAACGATAGATTTGTT+TGG - chr7_1:68246798-68246817 Msa1033210:intron 30.0%
! ATGATCTTGAACTGATTCTT+TGG + chr7_1:68246917-68246936 None:intergenic 30.0%
TATGGTCAGAATTAATGTGT+TGG - chr7_1:68246967-68246986 Msa1033210:CDS 30.0%
GAGAGAAGAAGAAAAATGGA+AGG - chr7_1:68243980-68243999 Msa1033210:three_prime_UTR 35.0%
GAAGAAAAATGGAAGGAGAT+AGG - chr7_1:68243987-68244006 Msa1033210:three_prime_UTR 35.0%
!!! TCTCTACAATTTGGTTTTGC+TGG - chr7_1:68244058-68244077 Msa1033210:three_prime_UTR 35.0%
CTCTCAAGAACAATAGCAAA+TGG + chr7_1:68244178-68244197 None:intergenic 35.0%
!! CATTTGCTATTGTTCTTGAG+AGG - chr7_1:68244176-68244195 Msa1033210:three_prime_UTR 35.0%
! CACACTCTATTTCTTGTCAT+TGG - chr7_1:68244284-68244303 Msa1033210:three_prime_UTR 35.0%
GTTTATGCAAATGTTCGTGT+TGG - chr7_1:68244340-68244359 Msa1033210:three_prime_UTR 35.0%
TTTCTTACAAGCACTTCAGT+CGG - chr7_1:68244439-68244458 Msa1033210:CDS 35.0%
! TATAGGTTCTGATCAATCAC+AGG + chr7_1:68244625-68244644 None:intergenic 35.0%
ATCAGAACCTATACTATGCT+GGG - chr7_1:68244632-68244651 Msa1033210:CDS 35.0%
ATTTCAACCCAGCATAGTAT+AGG + chr7_1:68244642-68244661 None:intergenic 35.0%
TAATAGCACATGAGTAGGTT+GGG + chr7_1:68244672-68244691 None:intergenic 35.0%
ATTGCTAATAGCACATGAGT+AGG + chr7_1:68244677-68244696 None:intergenic 35.0%
!! TTGTCATGGCAGTTATTTTC+AGG - chr7_1:68244716-68244735 Msa1033210:intron 35.0%
! GGAATTTAGGATGGAGAAAT+TGG - chr7_1:68244854-68244873 Msa1033210:intron 35.0%
GAACTGTAATTACAGTTGCT+GGG - chr7_1:68244913-68244932 Msa1033210:intron 35.0%
AACTGTAATTACAGTTGCTG+GGG - chr7_1:68244914-68244933 Msa1033210:intron 35.0%
TGATTCTGGTGAAAAGGATT+GGG - chr7_1:68245031-68245050 Msa1033210:intron 35.0%
!!! TCATGTTTTTTCGTCCTGAA+TGG - chr7_1:68245592-68245611 Msa1033210:intron 35.0%
GATGTAAACTTTGGTGAACA+GGG - chr7_1:68245744-68245763 Msa1033210:CDS 35.0%
GAACAGGGTATAATATCATC+AGG - chr7_1:68245759-68245778 Msa1033210:CDS 35.0%
GACTATTCCTTGAACATAGT+AGG + chr7_1:68245790-68245809 None:intergenic 35.0%
GGAATAGTCATGCAAAAGAA+AGG - chr7_1:68245801-68245820 Msa1033210:intron 35.0%
CTGAAAGCAGTAACAAAAAC+TGG + chr7_1:68245828-68245847 None:intergenic 35.0%
GATGATCATTGTCGCAATTA+TGG - chr7_1:68245857-68245876 Msa1033210:intron 35.0%
CTTTAGTATTGCATCACAAG+TGG - chr7_1:68246075-68246094 Msa1033210:CDS 35.0%
ATTTGTGACTGCAGTGTTAT+TGG - chr7_1:68246336-68246355 Msa1033210:CDS 35.0%
!!! GGAGCTATTTTGATCGTAAT+AGG - chr7_1:68246357-68246376 Msa1033210:CDS 35.0%
TAGGACTTTACTCAGTTCTA+TGG - chr7_1:68246376-68246395 Msa1033210:intron 35.0%
AGGACTTTACTCAGTTCTAT+GGG - chr7_1:68246377-68246396 Msa1033210:intron 35.0%
TGAAGAAGAGACAATAACTG+AGG - chr7_1:68246425-68246444 Msa1033210:intron 35.0%
GAAGAAGAGACAATAACTGA+GGG - chr7_1:68246426-68246445 Msa1033210:intron 35.0%
! GTGAAGCTACTAAAGTGTTA+AGG - chr7_1:68246535-68246554 Msa1033210:intron 35.0%
TGGTAGAGAGAATTGATAGA+AGG - chr7_1:68246636-68246655 Msa1033210:CDS 35.0%
ATCATGAACGTACTTAGGAA+CGG - chr7_1:68246692-68246711 Msa1033210:intron 35.0%
GTAGACTATTGGAGGATTTA+AGG - chr7_1:68246772-68246791 Msa1033210:intron 35.0%
TAAAATTTGAATTGGAGGGC+AGG - chr7_1:68246888-68246907 Msa1033210:CDS 35.0%
AAAATTTGAATTGGAGGGCA+GGG - chr7_1:68246889-68246908 Msa1033210:CDS 35.0%
!! TCAGAATTAATGTGTTGGCT+AGG - chr7_1:68246972-68246991 Msa1033210:CDS 35.0%
!! CAGAATTAATGTGTTGGCTA+GGG - chr7_1:68246973-68246992 Msa1033210:CDS 35.0%
TTAACCCTATAGTTTGAACG+AGG - chr7_1:68247050-68247069 Msa1033210:five_prime_UTR 35.0%
GAACATAGTGACTCATTCCA+CGG + chr7_1:68244114-68244133 None:intergenic 40.0%
! CTCTATTTCTTGTCATTGGC+AGG - chr7_1:68244288-68244307 Msa1033210:three_prime_UTR 40.0%
TTGTCATTGGCAGGAAGATA+AGG - chr7_1:68244297-68244316 Msa1033210:three_prime_UTR 40.0%
ATTTCGACTGTAGGGAATCT+GGG + chr7_1:68244420-68244439 None:intergenic 40.0%
AATTTCGACTGTAGGGAATC+TGG + chr7_1:68244421-68244440 None:intergenic 40.0%
GATCAGAACCTATACTATGC+TGG - chr7_1:68244631-68244650 Msa1033210:CDS 40.0%
AATAGCACATGAGTAGGTTG+GGG + chr7_1:68244671-68244690 None:intergenic 40.0%
CTAATAGCACATGAGTAGGT+TGG + chr7_1:68244673-68244692 None:intergenic 40.0%
CCATGACAAATGTCATTGCT+GGG + chr7_1:68244705-68244724 None:intergenic 40.0%
AGATGCCAAGTAAAGGTGAT+TGG - chr7_1:68244891-68244910 Msa1033210:intron 40.0%
CAGTTCCAATCACCTTTACT+TGG + chr7_1:68244899-68244918 None:intergenic 40.0%
GGAACTGTAATTACAGTTGC+TGG - chr7_1:68244912-68244931 Msa1033210:intron 40.0%
! CCAGAATCAGTAGTGTTTTC+AGG + chr7_1:68245020-68245039 None:intergenic 40.0%
!! CCTGAAAACACTACTGATTC+TGG - chr7_1:68245017-68245036 Msa1033210:intron 40.0%
!! CACTACTGATTCTGGTGAAA+AGG - chr7_1:68245025-68245044 Msa1033210:intron 40.0%
CTGATTCTGGTGAAAAGGAT+TGG - chr7_1:68245030-68245049 Msa1033210:intron 40.0%
AAGCAAAGGTGGCAATTATG+AGG + chr7_1:68245073-68245092 None:intergenic 40.0%
TCATAATTGCCACCTTTGCT+TGG - chr7_1:68245072-68245091 Msa1033210:intron 40.0%
CATAATTGCCACCTTTGCTT+GGG - chr7_1:68245073-68245092 Msa1033210:intron 40.0%
AAATGCAGGCTGTGACATTA+AGG - chr7_1:68245199-68245218 Msa1033210:CDS 40.0%
AATTGATTGAAGTGTGCCCA+AGG + chr7_1:68245265-68245284 None:intergenic 40.0%
!! AAATGCTTGGAGCATTGGTT+GGG - chr7_1:68245314-68245333 Msa1033210:intron 40.0%
TCACAGTCAAATGCGACTAA+TGG - chr7_1:68245439-68245458 Msa1033210:intron 40.0%
! CCAAAAAAGCATGTCCATTC+AGG + chr7_1:68245609-68245628 None:intergenic 40.0%
!!! CCTGAATGGACATGCTTTTT+TGG - chr7_1:68245606-68245625 Msa1033210:intron 40.0%
TATAACGACTGCAATTTCGC+CGG + chr7_1:68245659-68245678 None:intergenic 40.0%
GGATGTAAACTTTGGTGAAC+AGG - chr7_1:68245743-68245762 Msa1033210:CDS 40.0%
GCGACAATGATCATCATCAA+AGG + chr7_1:68245852-68245871 None:intergenic 40.0%
GGACTTTACTCAGTTCTATG+GGG - chr7_1:68246378-68246397 Msa1033210:intron 40.0%
GGTTGAGCGTTAACGAAAAT+TGG - chr7_1:68246657-68246676 Msa1033210:CDS 40.0%
! ACGGAAGAGATACATCGTTT+TGG - chr7_1:68246711-68246730 Msa1033210:intron 40.0%
TAGGCGGTATAGTAGACTAT+TGG - chr7_1:68246761-68246780 Msa1033210:intron 40.0%
TGTGCCTCGTTCAAACTATA+GGG + chr7_1:68247057-68247076 None:intergenic 40.0%
ATGTGCCTCGTTCAAACTAT+AGG + chr7_1:68247058-68247077 None:intergenic 40.0%
ACAAAGGTTTCACTCAACCG+TGG - chr7_1:68244094-68244113 Msa1033210:three_prime_UTR 45.0%
ATGTTCGTGTTGGGACTTCT+CGG - chr7_1:68244350-68244369 Msa1033210:three_prime_UTR 45.0%
CCCAGCAATGACATTTGTCA+TGG - chr7_1:68244702-68244721 Msa1033210:intron 45.0%
GCCATGACAAATGTCATTGC+TGG + chr7_1:68244706-68244725 None:intergenic 45.0%
!! GGTGAAAAGGATTGGGTTGA+AGG - chr7_1:68245038-68245057 Msa1033210:intron 45.0%
GAAGAAAGAAGCCCAAGCAA+AGG + chr7_1:68245087-68245106 None:intergenic 45.0%
GGCTTCTTTCTTCATCCTTC+AGG - chr7_1:68245094-68245113 Msa1033210:CDS 45.0%
ACAGCCATAGTGTGTTCCTT+GGG - chr7_1:68245246-68245265 Msa1033210:intron 45.0%
TGGAGCATAAGCCAAATGCT+TGG - chr7_1:68245301-68245320 Msa1033210:intron 45.0%
AAGCCAAATGCTTGGAGCAT+TGG - chr7_1:68245309-68245328 Msa1033210:intron 45.0%
CAACCAATGCTCCAAGCATT+TGG + chr7_1:68245315-68245334 None:intergenic 45.0%
!! CAAATGCTTGGAGCATTGGT+TGG - chr7_1:68245313-68245332 Msa1033210:intron 45.0%
ATTAAGGTGGTCATCAGTCG+TGG + chr7_1:68245465-68245484 None:intergenic 45.0%
GGTCTGACCTACTATGTTCA+AGG - chr7_1:68245780-68245799 Msa1033210:intron 45.0%
GTGAACGGTGATAAGCACTT+TGG - chr7_1:68246289-68246308 Msa1033210:CDS 45.0%
!!! CATCGTTTTGGAGTGAAGAG+TGG - chr7_1:68246723-68246742 Msa1033210:intron 45.0%
GCGGTATAGTAGACTATTGG+AGG - chr7_1:68246764-68246783 Msa1033210:intron 45.0%
!! AGATTATATAAATATTAATT+TGG + chr7_1:68244766-68244785 None:intergenic 5.0%
!!! AAAATAAAATACTTTTTTAT+TGG + chr7_1:68245956-68245975 None:intergenic 5.0%
TTGGCAGGAAGATAAGGCCA+AGG - chr7_1:68244303-68244322 Msa1033210:three_prime_UTR 50.0%
TGTTCGTGTTGGGACTTCTC+GGG - chr7_1:68244351-68244370 Msa1033210:three_prime_UTR 50.0%
AATTACAGTTGCTGGGGCCA+TGG - chr7_1:68244920-68244939 Msa1033210:intron 50.0%
GAAAGAAGCCCAAGCAAAGG+TGG + chr7_1:68245084-68245103 None:intergenic 50.0%
CACAGCCATAGTGTGTTCCT+TGG - chr7_1:68245245-68245264 Msa1033210:intron 50.0%
TGTGCCCAAGGAACACACTA+TGG + chr7_1:68245253-68245272 None:intergenic 50.0%
GTCTACTATACCGCCTACCA+CGG + chr7_1:68246758-68246777 None:intergenic 50.0%
GGGGGAGAGACTTACAGCAT+AGG + chr7_1:68245361-68245380 None:intergenic 55.0%
!! GGGGTCGTTCTAGCTCAGCA+TGG - chr7_1:68246616-68246635 Msa1033210:intron 60.0%
TGGAGTGAAGAGTGGAGCCG+TGG - chr7_1:68246731-68246750 Msa1033210:intron 60.0%
ATACCGCCTACCACGGTCCA+CGG + chr7_1:68246751-68246770 None:intergenic 60.0%
AAGAGTGGAGCCGTGGACCG+TGG - chr7_1:68246738-68246757 Msa1033210:intron 65.0%
GTGGAGCCGTGGACCGTGGT+AGG - chr7_1:68246742-68246761 Msa1033210:intron 70.0%
GAGCCGTGGACCGTGGTAGG+CGG - chr7_1:68246745-68246764 Msa1033210:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 68243892 68247109 68243892 ID=Msa1033210;Name=Msa1033210
chr7_1 mRNA 68243892 68247109 68243892 ID=Msa1033210-mRNA-1;Parent=Msa1033210;Name=Msa1033210-mRNA-1;_AED=0.11;_eAED=0.11;_QI=103|1|1|1|1|1|7|522|394
chr7_1 exon 68243892 68244651 68243892 ID=Msa1033210-mRNA-1:exon:15937;Parent=Msa1033210-mRNA-1
chr7_1 exon 68245085 68245236 68245085 ID=Msa1033210-mRNA-1:exon:15936;Parent=Msa1033210-mRNA-1
chr7_1 exon 68245636 68245794 68245636 ID=Msa1033210-mRNA-1:exon:15935;Parent=Msa1033210-mRNA-1
chr7_1 exon 68245886 68246138 68245886 ID=Msa1033210-mRNA-1:exon:15934;Parent=Msa1033210-mRNA-1
chr7_1 exon 68246264 68246380 68246264 ID=Msa1033210-mRNA-1:exon:15933;Parent=Msa1033210-mRNA-1
chr7_1 exon 68246629 68246691 68246629 ID=Msa1033210-mRNA-1:exon:15932;Parent=Msa1033210-mRNA-1
chr7_1 exon 68246804 68247109 68246804 ID=Msa1033210-mRNA-1:exon:15931;Parent=Msa1033210-mRNA-1
chr7_1 five_prime_UTR 68247007 68247109 68247007 ID=Msa1033210-mRNA-1:five_prime_utr;Parent=Msa1033210-mRNA-1
chr7_1 CDS 68246804 68247006 68246804 ID=Msa1033210-mRNA-1:cds;Parent=Msa1033210-mRNA-1
chr7_1 CDS 68246629 68246691 68246629 ID=Msa1033210-mRNA-1:cds;Parent=Msa1033210-mRNA-1
chr7_1 CDS 68246264 68246380 68246264 ID=Msa1033210-mRNA-1:cds;Parent=Msa1033210-mRNA-1
chr7_1 CDS 68245886 68246138 68245886 ID=Msa1033210-mRNA-1:cds;Parent=Msa1033210-mRNA-1
chr7_1 CDS 68245636 68245794 68245636 ID=Msa1033210-mRNA-1:cds;Parent=Msa1033210-mRNA-1
chr7_1 CDS 68245085 68245236 68245085 ID=Msa1033210-mRNA-1:cds;Parent=Msa1033210-mRNA-1
chr7_1 CDS 68244414 68244651 68244414 ID=Msa1033210-mRNA-1:cds;Parent=Msa1033210-mRNA-1
chr7_1 three_prime_UTR 68243892 68244413 68243892 ID=Msa1033210-mRNA-1:three_prime_utr;Parent=Msa1033210-mRNA-1
Gene Sequence

>Msa1033210

ATGGAAGGAGATAGGTGTAGTACAAGTTTTTTTCAGAGGTGCAAGCCATACATAGCAATGATTTCTCTACAATTTGGTTTTGCTGGTATGAACATAATAACAAAGGTTTCACTCAACCGTGGAATGAGTCACTATGTTCTTGTTGTTTATAGACATGCTTTTGCTACTGCTGTTATTGCTCCATTTGCTATTGTTCTTGAGAGGAAGATAAGGCCAAGGATCACATTTCTTATGTTTATGCAAATGTTCGTGTTGGGACTTCTCGGGCCTGTGATTGATCAGAACCTATACTATGCTGGGTTGAAATTCACTTCCCCAACCTACTCATGTGCTATTAGCAATATTCTCCCAGCAATGACATTTGTCATGGCAGTTATTTTCAGGATGGAGAAATTGGACATAAAAAAATTAAGATGCCAAGTAAAGGTGATTGGAACTGTAATTACAGTTGCTGGGGCCATGGTGATGACATTATACAAAGGACAAGTTATTAATATATTAAGTTCTCAATACATGCATCATCCTAGAAATTATGAACCTGAAAACACTACTGATTCTGGTGAAAAGGATTGGGTTGAAGGTTCTATTCTCCTCATAATTGCCACCTTTGCTTGGGCTTCTTTCTTCATCCTTCAGGCTGTGACATTAAGGAAATATTCAGCTCAGCTCTCACTCACAGCCATAGTGTGTTCCTTGGGCACACTTCAATCAATTGCTGTGACTTTTGTTATGGAGCATAAGCCAAATGCTTGGAGCATTGGTTGGGACATGAACTTATTAGCTGCAGCCTATGCTGGTATAATATCATCAGGTCTGACCTACTATGTTCAAGGAATAGTCATGCAAAAGAAAGGGCCAGTTTTTGTTACTGCTTTCAGTCCTTTGATGATGATCATTGTCGCAATTATGGGCACTTTCATCCTTGCAGAAAAATTATATCTTGGAGGTGTTATTGGAGCTATTTTGATCGTAATAGGACTTTACTCAGTTCTATGGGGCAAAAGCAAAGAAAATAAAGAGATTGAAGAAGAGACAATAACTGAGGGAATGAAGTGTTGTGTAGAAAATGGAGTAATATTGGAAACAGTGATTGAAGGTGTTGAAGAAACAAATGATATTGAAATGCAAAAGGGTGAAGCTACTAAAGTGTTAAGGGTAGCAATTATTAGTGTTCCAAAAGTTTAA
Protein sequence

>Msa1033210

MEGDRCSTSFFQRCKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNILPAMTFVMAVIFRMEKLDIKKLRCQVKVIGTVITVAGAMVMTLYKGQVINILSSQYMHHPRNYEPENTTDSGEKDWVEGSILLIIATFAWASFFILQAVTLRKYSAQLSLTAIVCSLGTLQSIAVTFVMEHKPNAWSIGWDMNLLAAAYAGIISSGLTYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGTFILAEKLYLGGVIGAILIVIGLYSVLWGKSKENKEIEEETITEGMKCCVENGVILETVIEGVEETNDIEMQKGEATKVLRVAIISVPKV*