AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0141570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141570 MtrunA17_Chr7g0255561 97.716 394 8 1 1 394 1 393 0.0 790
Msa0141570 MtrunA17_Chr7g0255581 97.716 394 8 1 1 394 1 393 0.0 790
Msa0141570 MtrunA17_Chr8g0354121 63.710 372 125 5 11 373 9 379 1.05e-169 479
Msa0141570 MtrunA17_Chr3g0081511 58.824 391 152 5 2 388 4 389 4.75e-163 463
Msa0141570 MtrunA17_Chr3g0081421 57.881 387 154 4 1 381 3 386 9.79e-161 457
Msa0141570 MtrunA17_Chr1g0160171 51.124 356 168 2 4 357 3 354 5.99e-128 373
Msa0141570 MtrunA17_Chr3g0114691 47.423 388 194 6 2 383 7 390 1.64e-125 367
Msa0141570 MtrunA17_Chr7g0263101 52.553 333 153 2 6 337 4 332 1.64e-124 364
Msa0141570 MtrunA17_Chr1g0182291 49.859 355 167 4 7 356 7 355 3.18e-122 358
Msa0141570 MtrunA17_Chr3g0114731 47.904 334 168 1 11 344 14 341 5.30e-113 336
Msa0141570 MtrunA17_Chr1g0160181 47.633 338 174 2 8 344 11 346 1.61e-111 332
Msa0141570 MtrunA17_Chr3g0114711 41.598 363 170 4 12 337 11 368 7.09e-105 315
Msa0141570 MtrunA17_Chr3g0114701 46.084 332 176 2 9 339 3 332 1.52e-100 303
Msa0141570 MtrunA17_Chr1g0186601 43.027 337 182 5 11 345 12 340 1.60e-93 284
Msa0141570 MtrunA17_Chr1g0171301 41.761 352 198 4 6 356 7 352 7.01e-93 283
Msa0141570 MtrunA17_Chr1g0186611 41.964 336 187 3 11 345 12 340 4.44e-89 273
Msa0141570 MtrunA17_Chr1g0186571 42.090 335 186 3 12 345 10 337 1.76e-88 271
Msa0141570 MtrunA17_Chr1g0186641 42.090 335 186 4 12 345 10 337 2.43e-88 271
Msa0141570 MtrunA17_Chr1g0186561 42.560 336 186 3 11 345 12 341 1.09e-87 270
Msa0141570 MtrunA17_Chr7g0271561 39.237 367 216 4 16 377 8 372 8.25e-87 268
Msa0141570 MtrunA17_Chr6g0463971 36.620 355 218 4 12 365 13 361 8.48e-85 262
Msa0141570 MtrunA17_Chr3g0142131 39.368 348 202 1 5 343 10 357 6.80e-82 256
Msa0141570 MtrunA17_Chr2g0278561 38.261 345 206 3 1 343 3 342 3.98e-80 251
Msa0141570 MtrunA17_Chr4g0059311 37.462 331 202 2 10 339 6 332 2.30e-79 248
Msa0141570 MtrunA17_Chr2g0278541 38.209 335 199 3 15 343 12 344 4.52e-79 248
Msa0141570 MtrunA17_Chr2g0290611 38.529 340 201 3 12 348 9 343 5.33e-79 248
Msa0141570 MtrunA17_Chr1g0184221 34.670 349 206 2 11 345 12 352 6.89e-79 247
Msa0141570 MtrunA17_Chr1g0155761 38.028 355 206 2 4 344 10 364 1.08e-78 248
Msa0141570 MtrunA17_Chr4g0050881 38.253 332 200 4 15 344 9 337 1.43e-75 238
Msa0141570 MtrunA17_Chr2g0278551 38.053 339 204 2 15 351 12 346 4.17e-75 238
Msa0141570 MtrunA17_Chr3g0129571 34.286 350 215 2 16 350 8 357 4.73e-75 237
Msa0141570 MtrunA17_Chr6g0483401 37.500 336 210 0 24 359 19 354 1.94e-74 236
Msa0141570 MtrunA17_Chr2g0284261 37.117 326 199 3 15 340 8 327 9.16e-73 231
Msa0141570 MtrunA17_Chr3g0129601 33.431 341 214 2 15 349 29 362 4.87e-72 229
Msa0141570 MtrunA17_Chr8g0334761 35.695 367 223 3 16 377 11 369 1.73e-71 228
Msa0141570 MtrunA17_Chr4g0051021 35.942 345 213 4 12 352 11 351 1.08e-70 226
Msa0141570 MtrunA17_Chr4g0050891 37.500 328 194 3 11 332 9 331 1.60e-70 226
Msa0141570 MtrunA17_Chr1g0160111 34.247 365 214 4 24 377 16 365 2.05e-70 226
Msa0141570 MtrunA17_Chr1g0177221 43.254 252 137 2 15 265 18 264 1.55e-69 220
Msa0141570 MtrunA17_Chr2g0332001 36.202 337 209 3 10 345 33 364 2.06e-69 224
Msa0141570 MtrunA17_Chr4g0050941 37.240 384 227 7 11 388 8 383 2.36e-69 223
Msa0141570 MtrunA17_Chr1g0164831 35.000 340 210 4 15 351 3 334 6.36e-68 218
Msa0141570 MtrunA17_Chr3g0129591 34.104 346 220 3 16 356 6 348 2.80e-66 214
Msa0141570 MtrunA17_Chr8g0334751 37.101 345 204 4 16 355 12 348 9.06e-64 208
Msa0141570 MtrunA17_Chr8g0383731 33.233 331 215 2 12 338 2 330 1.13e-62 205
Msa0141570 MtrunA17_Chr5g0413941 35.671 328 205 3 19 345 11 333 3.72e-62 203
Msa0141570 MtrunA17_Chr3g0129581 35.838 346 214 3 16 356 6 348 5.15e-62 203
Msa0141570 MtrunA17_Chr8g0334771 35.417 336 202 3 16 345 11 337 6.88e-62 203
Msa0141570 MtrunA17_Chr3g0126101 34.441 331 208 4 16 344 7 330 1.30e-60 199
Msa0141570 MtrunA17_Chr2g0310441 34.139 331 211 3 16 344 11 336 1.81e-60 199
Msa0141570 MtrunA17_Chr5g0413961 31.402 328 217 2 12 339 11 330 1.52e-59 197
Msa0141570 MtrunA17_Chr1g0150151 31.214 346 229 4 1 344 1 339 2.69e-59 196
Msa0141570 MtrunA17_Chr5g0413921 35.061 328 203 5 20 344 12 332 3.72e-59 195
Msa0141570 MtrunA17_Chr5g0413951 35.404 322 196 5 20 337 12 325 2.56e-58 193
Msa0141570 MtrunA17_Chr7g0227921 34.615 338 206 6 11 344 7 333 1.38e-57 192
Msa0141570 MtrunA17_Chr4g0073241 30.499 341 223 4 16 351 9 340 6.18e-56 188
Msa0141570 MtrunA17_Chr5g0407971 34.718 337 206 4 15 339 11 345 1.56e-55 187
Msa0141570 MtrunA17_Chr4g0050931 32.754 345 184 4 11 349 8 310 2.83e-54 182
Msa0141570 MtrunA17_Chr5g0413931 34.146 328 206 5 20 344 11 331 4.71e-54 182
Msa0141570 MtrunA17_Chr6g0451171 31.967 366 236 7 9 372 6 360 1.19e-53 182
Msa0141570 MtrunA17_Chr5g0408001 34.513 339 208 4 15 341 10 346 1.68e-52 179
Msa0141570 MtrunA17_Chr4g0051001 33.115 305 201 2 12 315 28 330 1.23e-51 176
Msa0141570 MtrunA17_Chr5g0407991 33.918 342 214 2 15 345 9 349 2.38e-51 176
Msa0141570 MtrunA17_Chr6g0451201 32.402 358 230 6 5 362 2 347 2.40e-51 176
Msa0141570 MtrunA17_Chr5g0428881 29.080 337 238 1 10 346 13 348 7.55e-51 175
Msa0141570 MtrunA17_Chr6g0451251 35.455 330 201 5 35 362 32 351 1.48e-50 174
Msa0141570 MtrunA17_Chr5g0408031 33.333 342 212 4 12 339 7 346 1.04e-49 172
Msa0141570 MtrunA17_Chr5g0408041 34.402 343 209 4 15 343 11 351 2.33e-49 171
Msa0141570 MtrunA17_Chr6g0451211 32.647 340 215 6 9 344 6 335 2.04e-48 168
Msa0141570 MtrunA17_Chr5g0441761 28.529 333 228 2 19 351 18 340 1.26e-47 166
Msa0141570 MtrunA17_Chr3g0126091 29.794 339 221 5 16 345 12 342 5.48e-47 164
Msa0141570 MtrunA17_Chr8g0369841 30.060 336 223 2 15 339 9 343 1.45e-45 161
Msa0141570 MtrunA17_Chr1g0211801 32.432 259 170 3 7 265 3 256 2.83e-42 149
Msa0141570 MtrunA17_Chr6g0451261 30.159 315 211 5 5 318 4 310 1.85e-41 155
Msa0141570 MtrunA17_Chr5g0429001 30.357 280 190 2 68 346 8 283 8.72e-40 144
Msa0141570 MtrunA17_Chr3g0084091 31.276 243 164 1 95 337 10 249 1.50e-38 140
Msa0141570 MtrunA17_Chr5g0404811 34.389 221 143 1 123 343 1 219 2.41e-38 138
Msa0141570 MtrunA17_Chr2g0278021 35.023 217 134 3 129 340 1 215 5.70e-33 125
Msa0141570 MtrunA17_Chr6g0451191 31.984 247 156 5 129 373 1 237 9.82e-33 123
Msa0141570 MtrunA17_Chr4g0056081 28.487 337 208 10 19 338 18 338 1.25e-32 125
Msa0141570 MtrunA17_Chr1g0182261 45.714 140 73 3 208 344 78 217 2.26e-32 122
Msa0141570 MtrunA17_Chr1g0182261 40.000 75 45 0 11 85 10 84 2.55e-13 68.9
Msa0141570 MtrunA17_Chr8g0334711 36.139 202 115 4 16 212 11 203 1.63e-31 119
Msa0141570 MtrunA17_Chr5g0399281 27.329 322 228 5 19 338 12 329 4.31e-30 118
Msa0141570 MtrunA17_Chr1g0172881 41.781 146 70 4 123 265 16 149 2.97e-28 108
Msa0141570 MtrunA17_Chr5g0404801 44.444 117 65 0 12 128 4 120 2.23e-25 99.8
Msa0141570 MtrunA17_Chr8g0372571 93.478 46 3 0 244 289 1 46 1.33e-24 95.9
Msa0141570 MtrunA17_Chr2g0278031 42.342 111 64 0 15 125 14 124 3.43e-24 96.7
Msa0141570 MtrunA17_Chr4g0021721 91.304 46 4 0 244 289 1 46 6.03e-24 94.0
Msa0141570 MtrunA17_Chr8g0334721 40.164 122 73 0 229 350 1 122 6.53e-24 97.1
Msa0141570 MtrunA17_Chr1g0177231 51.899 79 38 0 266 344 29 107 3.85e-22 91.3
Msa0141570 MtrunA17_Chr1g0172891 51.250 80 38 1 272 351 13 91 3.77e-20 85.1
Msa0141570 MtrunA17_Chr8g0334731 30.189 212 121 7 16 224 12 199 5.49e-18 81.6
Msa0141570 MtrunA17_Chr4g0050921 32.353 102 69 0 217 318 3 104 5.31e-16 74.3
Msa0141570 MtrunA17_Chr4g0050911 40.449 89 52 1 95 182 11 99 6.51e-16 75.1
Msa0141570 MtrunA17_Chr1g0211811 40.541 74 44 0 267 340 1 74 8.00e-16 72.4
Msa0141570 MtrunA17_Chr6g0451241 52.459 61 27 1 284 344 26 84 1.44e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141570 AT5G07050.1 61.965 397 136 6 1 392 3 389 1.22e-172 488
Msa0141570 AT2G40900.1 53.083 373 162 4 12 382 7 368 3.18e-150 431
Msa0141570 AT3G56620.1 52.941 374 166 3 12 383 7 372 4.14e-140 404
Msa0141570 AT1G21890.1 50.733 341 163 1 15 350 10 350 3.15e-128 374
Msa0141570 AT4G08300.1 49.462 372 173 4 12 373 7 373 1.42e-124 365
Msa0141570 AT2G37460.1 50.588 340 156 3 12 345 11 344 2.93e-122 359
Msa0141570 AT1G44800.1 48.266 346 174 3 12 356 7 348 3.85e-121 356
Msa0141570 AT2G39510.1 47.632 359 182 3 15 372 7 360 1.62e-120 354
Msa0141570 AT1G21890.2 52.288 306 141 1 15 315 10 315 8.09e-115 339
Msa0141570 AT4G08290.1 46.588 337 175 2 1 337 1 332 1.14e-112 335
Msa0141570 AT5G13670.1 45.317 331 174 4 11 338 3 329 1.40e-102 308
Msa0141570 AT2G37450.2 42.941 340 166 3 12 350 5 317 4.00e-89 273
Msa0141570 AT1G09380.1 40.439 319 190 0 16 334 8 326 9.84e-86 265
Msa0141570 AT1G75500.1 37.396 361 217 4 12 365 16 374 2.08e-79 249
Msa0141570 AT1G75500.2 37.396 361 217 4 12 365 16 374 2.08e-79 249
Msa0141570 AT4G08290.2 42.803 264 146 2 1 264 1 259 1.30e-77 241
Msa0141570 AT3G18200.2 38.988 336 195 4 12 345 31 358 5.69e-77 243
Msa0141570 AT3G53210.1 37.500 336 201 2 12 344 6 335 5.41e-73 233
Msa0141570 AT5G64700.1 34.821 336 214 3 15 346 7 341 2.12e-72 231
Msa0141570 AT3G30340.1 36.000 325 205 1 15 339 10 331 2.30e-70 225
Msa0141570 AT1G43650.1 36.047 344 200 4 15 346 6 341 1.68e-67 218
Msa0141570 AT4G30420.2 35.311 354 207 6 15 356 8 351 7.23e-67 217
Msa0141570 AT1G25270.1 36.196 326 206 1 15 340 2 325 4.17e-66 214
Msa0141570 AT4G30420.1 35.362 345 213 4 18 356 1 341 3.96e-65 212
Msa0141570 AT2G37450.3 44.958 238 124 2 101 337 1 232 1.80e-64 207
Msa0141570 AT1G01070.1 34.278 353 224 4 1 351 1 347 1.70e-61 202
Msa0141570 AT1G68170.2 33.634 333 216 2 11 341 8 337 3.53e-56 189
Msa0141570 AT4G01440.1 31.343 335 218 2 16 346 10 336 5.91e-56 188
Msa0141570 AT1G68170.1 34.043 329 212 2 15 341 2 327 8.06e-56 187
Msa0141570 AT1G11450.3 32.258 341 224 4 12 351 12 346 3.11e-55 186
Msa0141570 AT4G28040.1 32.036 334 204 7 12 340 4 319 5.51e-55 185
Msa0141570 AT4G28040.5 32.036 334 204 7 12 340 4 319 5.51e-55 185
Msa0141570 AT4G28040.3 32.036 334 204 7 12 340 4 319 5.51e-55 185
Msa0141570 AT4G28040.4 32.036 334 204 7 12 340 4 319 5.51e-55 185
Msa0141570 AT4G28040.2 32.036 334 204 7 12 340 4 319 5.51e-55 185
Msa0141570 AT5G40240.1 31.454 337 227 4 4 338 7 341 9.03e-55 185
Msa0141570 AT5G40240.3 31.454 337 227 4 4 338 7 341 9.03e-55 185
Msa0141570 AT5G40240.2 31.765 340 227 5 2 338 18 355 1.06e-54 185
Msa0141570 AT5G40210.1 33.739 329 182 6 19 339 16 316 1.53e-54 184
Msa0141570 AT1G11460.1 33.435 329 210 3 12 337 12 334 1.54e-54 184
Msa0141570 AT5G40230.1 31.487 343 223 6 3 339 7 343 8.24e-53 180
Msa0141570 AT2G37450.1 41.964 224 123 2 128 350 61 278 6.09e-52 176
Msa0141570 AT2G37450.1 54.386 57 26 0 12 68 5 61 4.49e-13 69.7
Msa0141570 AT4G01430.1 30.588 340 230 4 12 348 5 341 7.42e-51 175
Msa0141570 AT3G53210.2 36.328 256 154 2 92 344 29 278 8.21e-51 173
Msa0141570 AT3G28050.1 30.994 342 218 8 10 345 5 334 9.77e-50 172
Msa0141570 AT5G45370.1 33.333 321 200 2 19 339 23 329 1.78e-49 171
Msa0141570 AT3G45870.1 33.846 325 207 3 15 332 11 334 2.66e-49 171
Msa0141570 AT1G01070.2 34.932 292 182 4 62 351 15 300 3.12e-49 169
Msa0141570 AT4G01440.3 30.921 304 198 2 16 315 10 305 3.31e-49 169
Msa0141570 AT1G11450.5 33.333 303 195 4 50 351 6 302 5.67e-49 168
Msa0141570 AT5G45370.2 32.229 332 213 2 19 339 23 353 2.22e-48 169
Msa0141570 AT5G45370.4 32.229 332 213 2 19 339 23 353 2.22e-48 169
Msa0141570 AT1G70260.1 29.290 338 227 3 16 345 12 345 3.00e-48 168
Msa0141570 AT3G53210.3 35.918 245 148 2 12 253 6 244 1.85e-47 163
Msa0141570 AT1G11450.2 33.000 300 194 4 53 351 2 295 2.94e-47 163
Msa0141570 AT3G18200.1 38.136 236 136 4 112 345 1 228 4.50e-47 161
Msa0141570 AT3G28130.2 32.047 337 211 7 19 345 16 344 8.68e-47 164
Msa0141570 AT3G28100.1 31.378 341 219 7 7 340 4 336 1.49e-46 163
Msa0141570 AT4G19185.1 32.635 334 213 2 17 339 22 354 1.59e-46 164
Msa0141570 AT3G30340.2 34.263 251 162 1 15 265 10 257 4.76e-46 160
Msa0141570 AT5G64700.2 32.549 255 167 3 15 265 7 260 9.71e-46 158
Msa0141570 AT4G15540.1 30.792 341 219 4 1 339 1 326 1.13e-45 160
Msa0141570 AT4G15540.2 30.792 341 219 4 1 339 1 326 1.13e-45 160
Msa0141570 AT1G11450.4 30.820 305 205 3 12 315 12 311 7.15e-45 157
Msa0141570 AT3G28070.2 35.102 245 153 4 98 340 7 247 2.26e-44 155
Msa0141570 AT3G28070.1 35.102 245 153 4 98 340 99 339 2.22e-43 155
Msa0141570 AT3G45870.8 33.117 308 198 3 15 315 11 317 4.24e-43 153
Msa0141570 AT3G28130.5 34.783 253 157 4 98 345 9 258 5.48e-43 151
Msa0141570 AT3G28130.1 34.783 253 157 4 98 345 9 258 5.48e-43 151
Msa0141570 AT5G47470.1 31.515 330 210 7 19 343 33 351 6.94e-42 151
Msa0141570 AT5G47470.2 31.515 330 210 7 19 343 61 379 1.05e-41 151
Msa0141570 AT4G01430.2 30.945 307 206 4 12 315 5 308 1.11e-41 149
Msa0141570 AT5G47470.3 31.515 330 210 7 19 343 61 379 1.33e-41 150
Msa0141570 AT4G24980.1 29.773 309 147 5 30 338 1 239 3.09e-41 147
Msa0141570 AT3G28080.5 36.475 244 147 6 100 340 9 247 1.67e-40 145
Msa0141570 AT3G28080.7 36.475 244 147 6 100 340 9 247 1.67e-40 145
Msa0141570 AT3G28080.8 36.475 244 147 6 100 340 9 247 1.67e-40 145
Msa0141570 AT3G28080.6 36.475 244 147 6 100 340 9 247 1.67e-40 145
Msa0141570 AT3G28080.1 32.622 328 207 9 19 340 17 336 1.90e-40 147
Msa0141570 AT3G28080.2 36.475 244 147 6 100 340 90 328 1.27e-39 144
Msa0141570 AT4G01440.4 31.890 254 161 2 16 265 10 255 1.49e-39 142
Msa0141570 AT1G43650.2 32.669 251 160 3 15 264 6 248 6.59e-39 140
Msa0141570 AT4G01450.2 31.875 320 201 3 28 342 21 328 1.22e-37 139
Msa0141570 AT3G45870.9 34.146 246 155 2 15 253 11 256 5.85e-36 133
Msa0141570 AT4G01450.1 30.375 293 187 3 28 315 21 301 9.04e-36 134
Msa0141570 AT1G11450.1 31.274 259 171 3 94 351 2 254 1.56e-35 131
Msa0141570 AT4G19185.2 31.395 258 165 2 93 339 20 276 2.11e-35 132
Msa0141570 AT1G60050.1 28.080 349 223 6 16 348 13 349 9.89e-35 132
Msa0141570 AT4G01440.5 30.342 234 151 2 117 346 3 228 3.37e-34 127
Msa0141570 AT4G01440.2 30.342 234 151 2 117 346 3 228 3.37e-34 127
Msa0141570 AT4G16620.1 30.921 304 197 7 46 343 41 337 9.20e-33 126
Msa0141570 AT4G01450.4 32.751 229 137 3 28 251 21 237 1.69e-32 123
Msa0141570 AT3G28070.3 33.182 220 141 4 98 315 99 314 2.01e-32 124
Msa0141570 AT4G01450.3 33.491 212 124 3 28 234 21 220 3.15e-30 117
Msa0141570 AT5G45370.6 30.677 251 162 2 100 339 2 251 3.72e-30 117
Msa0141570 AT5G45370.5 30.677 251 162 2 100 339 2 251 3.72e-30 117
Msa0141570 AT3G28070.5 32.243 214 139 4 129 340 1 210 1.19e-29 115
Msa0141570 AT3G28130.3 32.432 222 142 4 129 345 1 219 2.54e-29 114
Msa0141570 AT3G28080.3 28.528 326 169 8 19 340 17 282 1.85e-27 110
Msa0141570 AT3G28080.4 30.992 242 109 5 100 340 9 193 2.72e-27 108
Msa0141570 AT3G28080.9 33.953 215 134 6 129 340 1 210 8.06e-27 107
Msa0141570 AT3G28100.3 30.645 248 159 5 19 260 17 257 1.80e-26 107
Msa0141570 AT3G45870.5 32.547 212 135 3 128 332 49 259 1.65e-25 105
Msa0141570 AT3G28130.4 29.435 248 162 5 19 260 16 256 5.57e-24 100
Msa0141570 AT4G16620.4 30.364 247 161 5 101 343 1 240 1.53e-23 99.0
Msa0141570 AT4G16620.2 30.364 247 161 5 101 343 1 240 1.53e-23 99.0
Msa0141570 AT3G28100.2 32.663 199 122 4 19 212 17 208 4.14e-21 92.0
Msa0141570 AT5G45370.3 27.984 243 161 3 110 339 52 293 1.08e-20 92.4
Msa0141570 AT3G28130.6 31.658 199 124 4 19 212 16 207 3.70e-20 88.6
Msa0141570 AT4G01430.3 27.536 207 145 3 144 348 1 204 6.17e-20 88.2
Msa0141570 AT4G16620.3 29.208 202 135 4 46 245 41 236 1.20e-19 88.6
Msa0141570 AT3G45870.6 31.282 195 126 3 128 315 49 242 1.28e-19 87.8
Msa0141570 AT3G45870.7 31.282 195 126 3 128 315 49 242 1.28e-19 87.8
Msa0141570 AT3G45870.2 33.333 147 97 1 186 332 38 183 2.22e-16 78.2
Msa0141570 AT3G45870.4 32.061 131 82 2 130 253 4 134 1.81e-12 65.5
Msa0141570 AT3G45870.3 30.128 156 99 3 105 253 29 181 2.46e-12 66.2
Msa0141570 AT3G28060.1 28.571 154 87 5 169 315 17 154 2.69e-12 64.7

Find 116 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGTTTAAGATTGAATT+TGG 0.143919 1_3:+76750303 None:intergenic
CATATCTTTCATGTGAAAAT+TGG 0.163457 1_3:-76750069 Msa0141570:three_prime_UTR
GTAGACTATTGGAGGATTTA+AGG 0.168844 1_3:-76750377 Msa0141570:three_prime_UTR
TATCTACATGCTTAAACTTT+TGG 0.196211 1_3:+76750573 None:intergenic
GGAATTTAGGATGGAGAAAT+TGG 0.206523 1_3:-76752295 Msa0141570:intron
GGCTTCTTTCTTCATCCTTC+AGG 0.230455 1_3:-76752055 Msa0141570:intron
TTAAGCATGTAGATATTATT+AGG 0.232966 1_3:-76750565 Msa0141570:exon
ATGATCTTGAACTGATTCTT+TGG 0.233434 1_3:+76750235 None:intergenic
GGTTGAGCGTTAACGAAAAT+TGG 0.237703 1_3:-76750492 Msa0141570:three_prime_UTR
GCAATGATTTCTCTACAATT+TGG 0.240624 1_3:-76753099 Msa0141570:CDS
GATGATCATTGTCGCAATTA+TGG 0.247539 1_3:-76751292 Msa0141570:CDS
ATTTGTGACTGCAGTGTTAT+TGG 0.252494 1_3:-76750813 Msa0141570:intron
CCTGAAAACACTACTGATTC+TGG 0.323745 1_3:-76752132 Msa0141570:CDS
TAGGACTTTACTCAGTTCTA+TGG 0.324315 1_3:-76750773 Msa0141570:CDS
AATGAAGATAAAATTTGAAT+TGG 0.328094 1_3:-76750269 Msa0141570:three_prime_UTR
GGAACTGTAATTACAGTTGC+TGG 0.333568 1_3:-76752237 Msa0141570:CDS
AAATGCAGGCTGTGACATTA+AGG 0.337786 1_3:-76751950 Msa0141570:intron
ATGAAGTGTTGCGTAGAAAA+TGG 0.340827 1_3:-76750699 Msa0141570:CDS
TCATAATTGCCACCTTTGCT+TGG 0.345790 1_3:-76752077 Msa0141570:CDS
ATGTTCGTGTTGGGACTTCT+CGG 0.352905 1_3:-76752799 Msa0141570:CDS
ATGTGCCTCGTTCAAACTAT+AGG 0.353351 1_3:+76750094 None:intergenic
CGTAGAAAATGGAGTAATAT+TGG 0.363042 1_3:-76750688 Msa0141570:CDS
GTGAAGCTACTAAAGTGTTA+AGG 0.367933 1_3:-76750614 Msa0141570:CDS
CAACCAATGCTCCAAGCATT+TGG 0.368276 1_3:+76751837 None:intergenic
CATAATTGCCACCTTTGCTT+GGG 0.374698 1_3:-76752076 Msa0141570:CDS
GGTGAAAAGGATTGGGTTGA+AGG 0.379275 1_3:-76752111 Msa0141570:CDS
CTGATTCTGGTGAAAAGGAT+TGG 0.390193 1_3:-76752119 Msa0141570:CDS
CACTACTGATTCTGGTGAAA+AGG 0.391411 1_3:-76752124 Msa0141570:CDS
ACAGAAGAGATACATCGTTT+TGG 0.394349 1_3:-76750438 Msa0141570:three_prime_UTR
ATGATCATTGTCGCAATTAT+GGG 0.399537 1_3:-76751291 Msa0141570:CDS
AGAGAAATCATTGCTATGTA+TGG 0.403687 1_3:+76753108 None:intergenic
TAATAGCACATGAGTAGGTT+GGG 0.409987 1_3:+76752480 None:intergenic
CGTTAACGAAAATTGGTTAT+CGG 0.417126 1_3:-76750485 Msa0141570:three_prime_UTR
ATGTAGATATTATTAGGATT+AGG 0.417520 1_3:-76750559 Msa0141570:three_prime_UTR
CAGTTCCAATCACCTTTACT+TGG 0.422944 1_3:+76752253 None:intergenic
AAATGATATTGAAATGCAAA+AGG 0.427377 1_3:-76750637 Msa0141570:CDS
ATGAGAACGATAGATTTGTT+TGG 0.435671 1_3:-76750351 Msa0141570:three_prime_UTR
AAGCCAAATGCTTGGAGCAT+TGG 0.441831 1_3:-76751840 Msa0141570:CDS
AGATGCCAAGTAAAGGTGAT+TGG 0.445654 1_3:-76752258 Msa0141570:CDS
GCCATGACAAATGTCATTGC+TGG 0.449617 1_3:+76752446 None:intergenic
TGGTAGAGAGAATTGATAGA+AGG 0.452079 1_3:-76750513 Msa0141570:three_prime_UTR
TAAAATTTGAATTGGAGGGC+AGG 0.452269 1_3:-76750261 Msa0141570:three_prime_UTR
AACATAAGAAATGTGATCCT+TGG 0.453298 1_3:+76752829 None:intergenic
TGTGCCTCGTTCAAACTATA+GGG 0.455048 1_3:+76750095 None:intergenic
TGAAGCTACTAAAGTGTTAA+GGG 0.455287 1_3:-76750613 Msa0141570:CDS
AGGACTTTACTCAGTTCTAT+GGG 0.455974 1_3:-76750772 Msa0141570:CDS
GATCAGAACCTATACTATGC+TGG 0.460553 1_3:-76752518 Msa0141570:CDS
CACAGCCATAGTGTGTTCCT+TGG 0.460675 1_3:-76751904 Msa0141570:CDS
TTGTCATTGGCAGGAAGATA+AGG 0.461420 1_3:-76752852 Msa0141570:intron
TGTGCCCAAGGAACACACTA+TGG 0.466969 1_3:+76751899 None:intergenic
CAAATGCTTGGAGCATTGGT+TGG 0.475581 1_3:-76751836 Msa0141570:CDS
ATTCAATCTTAAACTTGAGA+TGG 0.479498 1_3:-76750299 Msa0141570:three_prime_UTR
CTCTCAAGAACAATAGCAAA+TGG 0.479507 1_3:+76752973 None:intergenic
GGAATAGTCATGCAAAAGAA+AGG 0.480743 1_3:-76751348 Msa0141570:CDS
TGATTCTGGTGAAAAGGATT+GGG 0.481402 1_3:-76752118 Msa0141570:CDS
ATTTATTGTACTAATAAACT+AGG 0.481941 1_3:+76753204 None:intergenic
AAACTATCATGAACGTACTT+AGG 0.483390 1_3:-76750462 Msa0141570:three_prime_UTR
AAATGCTTGGAGCATTGGTT+GGG 0.486794 1_3:-76751835 Msa0141570:CDS
TGTTCGTGTTGGGACTTCTC+GGG 0.488097 1_3:-76752798 Msa0141570:intron
ATTTCAACCCAGCATAGTAT+AGG 0.492882 1_3:+76752510 None:intergenic
CTAATAGCACATGAGTAGGT+TGG 0.498278 1_3:+76752479 None:intergenic
GAAGATAAAATTTGAATTGG+AGG 0.501051 1_3:-76750266 Msa0141570:three_prime_UTR
GAACAGGGTATAATATCATC+AGG 0.501590 1_3:-76751390 Msa0141570:intron
CATTTGCTATTGTTCTTGAG+AGG 0.504801 1_3:-76752972 Msa0141570:intron
GAACTGTAATTACAGTTGCT+GGG 0.505303 1_3:-76752236 Msa0141570:CDS
GGTCTGACCTACTATGTTCA+AGG 0.506224 1_3:-76751369 Msa0141570:CDS
TAGGCGGTATAGTAGACTAT+TGG 0.508889 1_3:-76750388 Msa0141570:three_prime_UTR
TTTATGCAAATGTTCGTGTT+GGG 0.509361 1_3:-76752808 Msa0141570:CDS
ACAGCCATAGTGTGTTCCTT+GGG 0.511265 1_3:-76751903 Msa0141570:CDS
AAAATTTGAATTGGAGGGCA+GGG 0.512071 1_3:-76750260 Msa0141570:three_prime_UTR
AAGATAAAATTTGAATTGGA+GGG 0.512076 1_3:-76750265 Msa0141570:three_prime_UTR
TCAGAATTAATGTGTTGGCT+AGG 0.518698 1_3:-76750177 Msa0141570:three_prime_UTR
AAAATTAAGATGCCAAGTAA+AGG 0.523206 1_3:-76752265 Msa0141570:CDS
AGATATTATTAGGATTAGGA+AGG 0.528756 1_3:-76750555 Msa0141570:three_prime_UTR
AAGCAAAGGTGGCAATTATG+AGG 0.530606 1_3:+76752079 None:intergenic
ATCAGAACCTATACTATGCT+GGG 0.534041 1_3:-76752517 Msa0141570:CDS
GTTTATGCAAATGTTCGTGT+TGG 0.539764 1_3:-76752809 Msa0141570:CDS
AATGATATTGAAATGCAAAA+GGG 0.540111 1_3:-76750636 Msa0141570:CDS
GAATAGTCATGCAAAAGAAA+GGG 0.552823 1_3:-76751347 Msa0141570:CDS
TATTATTAGGATTAGGAAGG+GGG 0.553611 1_3:-76750552 Msa0141570:three_prime_UTR
ATATTATTAGGATTAGGAAG+GGG 0.554728 1_3:-76750553 Msa0141570:three_prime_UTR
GTGGAGCCGTGGACCGTGGT+AGG 0.556187 1_3:-76750407 Msa0141570:three_prime_UTR
CCCAGCAATGACATTTGTCA+TGG 0.557417 1_3:-76752447 Msa0141570:CDS
GCGGTATAGTAGACTATTGG+AGG 0.558021 1_3:-76750385 Msa0141570:three_prime_UTR
GATATTATTAGGATTAGGAA+GGG 0.565642 1_3:-76750554 Msa0141570:three_prime_UTR
TGGAGCATAAGCCAAATGCT+TGG 0.566635 1_3:-76751848 Msa0141570:CDS
AATTACAGTTGCTGGGGCCA+TGG 0.571553 1_3:-76752229 Msa0141570:CDS
ATATTGGAAACAGTGATTGA+AGG 0.577888 1_3:-76750672 Msa0141570:CDS
GAAAGAAGCCCAAGCAAAGG+TGG 0.577910 1_3:+76752068 None:intergenic
TATGGTCAGAATTAATGTGT+TGG 0.585596 1_3:-76750182 Msa0141570:three_prime_UTR
AATTGATTGAAGTGTGCCCA+AGG 0.589839 1_3:+76751887 None:intergenic
GACTATTCCTTGAACATAGT+AGG 0.590965 1_3:+76751362 None:intergenic
AATAGCACATGAGTAGGTTG+GGG 0.594825 1_3:+76752481 None:intergenic
TATAGGTTCTGATCAATCAC+AGG 0.594938 1_3:+76752527 None:intergenic
CAGAATTAATGTGTTGGCTA+GGG 0.595071 1_3:-76750176 Msa0141570:three_prime_UTR
ATTGCTAATAGCACATGAGT+AGG 0.596686 1_3:+76752475 None:intergenic
AACTGTAATTACAGTTGCTG+GGG 0.596912 1_3:-76752235 Msa0141570:CDS
GAGCCGTGGACCGTGGTAGG+CGG 0.606056 1_3:-76750404 Msa0141570:three_prime_UTR
GCGACAATGATCATCATCAA+AGG 0.607473 1_3:+76751300 None:intergenic
TGGAGTGAAGAGTGGAGCCG+TGG 0.608169 1_3:-76750418 Msa0141570:three_prime_UTR
CCATGACAAATGTCATTGCT+GGG 0.609642 1_3:+76752447 None:intergenic
GTCTACTATACCGCCTACCA+CGG 0.612154 1_3:+76750394 None:intergenic
TGGTATGAACATAATAACAA+AGG 0.615728 1_3:-76753070 Msa0141570:CDS
AAGAGTGGAGCCGTGGACCG+TGG 0.633950 1_3:-76750411 Msa0141570:three_prime_UTR
TGAAGAAGAGACAATAACTG+AGG 0.638287 1_3:-76750724 Msa0141570:CDS
GAAGAAGAGACAATAACTGA+GGG 0.639766 1_3:-76750723 Msa0141570:CDS
GAACATAGTGACTCATTCCA+CGG 0.650720 1_3:+76753037 None:intergenic
GAAGAAAGAAGCCCAAGCAA+AGG 0.650903 1_3:+76752065 None:intergenic
TTGGCAGGAAGATAAGGCCA+AGG 0.651054 1_3:-76752846 Msa0141570:intron
ATACCGCCTACCACGGTCCA+CGG 0.656561 1_3:+76750401 None:intergenic
TTTGTATAATGTCATCACCA+TGG 0.663821 1_3:+76752212 None:intergenic
GGACTTTACTCAGTTCTATG+GGG 0.681459 1_3:-76750771 Msa0141570:CDS
ACAAAGGTTTCACTCAACCG+TGG 0.684285 1_3:-76753054 Msa0141570:CDS
GGGGTCGTTCTAGCTCAGCA+TGG 0.693882 1_3:-76750533 Msa0141570:three_prime_UTR
ATGGTGATGACATTATACAA+AGG 0.703249 1_3:-76752210 Msa0141570:CDS
TTAACCCTATAGTTTGAACG+AGG 0.715011 1_3:-76750099 Msa0141570:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTTTATTTTT+TGG - chr1_3:76752136-76752155 Msa0141570:CDS 0.0%
!!! TAAATATTAATTTGGTTATT+GGG + chr1_3:76750927-76750946 None:intergenic 10.0%
!!! ATAAATATTAATTTGGTTAT+TGG + chr1_3:76750928-76750947 None:intergenic 10.0%
!! AAATAAAATACTTTATGATA+TGG + chr1_3:76752095-76752114 None:intergenic 10.0%
!!! TTTTTTTTTCTACTTTTTTT+GGG + chr1_3:76752392-76752411 None:intergenic 10.0%
!!! ATTTTTTTTTCTACTTTTTT+TGG + chr1_3:76752393-76752412 None:intergenic 10.0%
!! ATTTATTGTACTAATAAACT+AGG + chr1_3:76750117-76750136 None:intergenic 15.0%
!!! TGATTGCTAATTTATTTTTT+TGG + chr1_3:76751665-76751684 None:intergenic 15.0%
!! ATCAACAAACATAAAAAATA+GGG + chr1_3:76751871-76751890 None:intergenic 15.0%
!!! ATAAAATACTTTTTTATTGG+TGG + chr1_3:76752122-76752141 None:intergenic 15.0%
!! AATGAAGATAAAATTTGAAT+TGG - chr1_3:76753049-76753068 Msa0141570:CDS 15.0%
!! TTATCATTAAGAATGAATGA+TGG + chr1_3:76750375-76750394 None:intergenic 20.0%
!!! AACAAATTTTAGAACATTGT+TGG + chr1_3:76750756-76750775 None:intergenic 20.0%
!!! AATTTGTTATTGTTTGTATC+AGG - chr1_3:76750768-76750787 Msa0141570:CDS 20.0%
!!! TATGCTTTATTTTGGAATTT+AGG - chr1_3:76751010-76751029 Msa0141570:intron 20.0%
!!! AATTTTTTGTGATTAAATGC+AGG - chr1_3:76751354-76751373 Msa0141570:CDS 20.0%
!!! TTTTTTGGTAGTGATTATTA+AGG + chr1_3:76751650-76751669 None:intergenic 20.0%
!!! AACATAAAAAATAGGGTTTT+GGG + chr1_3:76751864-76751883 None:intergenic 20.0%
!!! AAACATAAAAAATAGGGTTT+TGG + chr1_3:76751865-76751884 None:intergenic 20.0%
!! CATCAACAAACATAAAAAAT+AGG + chr1_3:76751872-76751891 None:intergenic 20.0%
!!! TTTGTTGATGAATTTATTGA+GGG - chr1_3:76751882-76751901 Msa0141570:CDS 20.0%
!!! CAAGGTTTTAATTATATTTG+TGG + chr1_3:76752271-76752290 None:intergenic 20.0%
!!! ATTTGATATTTTCATTGGAT+TGG + chr1_3:76752295-76752314 None:intergenic 20.0%
!!! CTAGAATTTGATATTTTCAT+TGG + chr1_3:76752300-76752319 None:intergenic 20.0%
!! AAATGATATTGAAATGCAAA+AGG - chr1_3:76752681-76752700 Msa0141570:intron 20.0%
!! AATGATATTGAAATGCAAAA+GGG - chr1_3:76752682-76752701 Msa0141570:intron 20.0%
!! TTAAGCATGTAGATATTATT+AGG - chr1_3:76752753-76752772 Msa0141570:intron 20.0%
!! ATGTAGATATTATTAGGATT+AGG - chr1_3:76752759-76752778 Msa0141570:intron 20.0%
!! AAGATAAAATTTGAATTGGA+GGG - chr1_3:76753053-76753072 Msa0141570:CDS 20.0%
!!! TCATTTTCTTTTTCAAAGTA+TGG - chr1_3:76753118-76753137 Msa0141570:CDS 20.0%
!! ATTTTTCTTCTTCTCTCTAT+TGG + chr1_3:76750147-76750166 None:intergenic 25.0%
! AATAGAGAGAAGAAGAAAAA+TGG - chr1_3:76750146-76750165 Msa0141570:three_prime_UTR 25.0%
! TGGTATGAACATAATAACAA+AGG - chr1_3:76750248-76750267 Msa0141570:three_prime_UTR 25.0%
! TTGTAAGCCATTATCTATAA+CGG + chr1_3:76750644-76750663 None:intergenic 25.0%
!!! GTGTTACATATGCTTTATTT+TGG - chr1_3:76751002-76751021 Msa0141570:intron 25.0%
!!! CTTTATTTTGGAATTTAGGA+TGG - chr1_3:76751014-76751033 Msa0141570:intron 25.0%
! AAAATTAAGATGCCAAGTAA+AGG - chr1_3:76751053-76751072 Msa0141570:intron 25.0%
!!! TTTTCAGGTTCATAATTTCT+AGG + chr1_3:76751174-76751193 None:intergenic 25.0%
! TTTAACAATTACATACCTGA+AGG + chr1_3:76751281-76751300 None:intergenic 25.0%
! AAGTTAAAACTTTGATAAGG+GGG + chr1_3:76751548-76751567 None:intergenic 25.0%
! CAAGTTAAAACTTTGATAAG+GGG + chr1_3:76751549-76751568 None:intergenic 25.0%
! GCAAGTTAAAACTTTGATAA+GGG + chr1_3:76751550-76751569 None:intergenic 25.0%
! TGCAAGTTAAAACTTTGATA+AGG + chr1_3:76751551-76751570 None:intergenic 25.0%
! TTAGCAATCAAAATTAGTGA+CGG - chr1_3:76751675-76751694 Msa0141570:intron 25.0%
! GTTAAAAAAACTTGAAGTTC+CGG - chr1_3:76751806-76751825 Msa0141570:CDS 25.0%
!! GTTTGTTGATGAATTTATTG+AGG - chr1_3:76751881-76751900 Msa0141570:CDS 25.0%
!!! GAATTTATTGAGGGTATTAA+TGG - chr1_3:76751891-76751910 Msa0141570:CDS 25.0%
!! GTATTAATGGATGTAAACTT+TGG - chr1_3:76751904-76751923 Msa0141570:CDS 25.0%
!! CAAGATATAATTTTTCTGCA+AGG + chr1_3:76752062-76752081 None:intergenic 25.0%
! CTTGCAGAAAAATTATATCT+TGG - chr1_3:76752060-76752079 Msa0141570:CDS 25.0%
! CAGAAAAATTATATCTTGGA+GGG - chr1_3:76752064-76752083 Msa0141570:CDS 25.0%
! ATTCTAGTGAGAAATAAACT+TGG - chr1_3:76752313-76752332 Msa0141570:intron 25.0%
!! TATCTACATGCTTAAACTTT+TGG + chr1_3:76752748-76752767 None:intergenic 25.0%
! AGATATTATTAGGATTAGGA+AGG - chr1_3:76752763-76752782 Msa0141570:intron 25.0%
! GATATTATTAGGATTAGGAA+GGG - chr1_3:76752764-76752783 Msa0141570:intron 25.0%
! ATATTATTAGGATTAGGAAG+GGG - chr1_3:76752765-76752784 Msa0141570:intron 25.0%
!! CTCAAGTTTAAGATTGAATT+TGG + chr1_3:76753018-76753037 None:intergenic 25.0%
! ATTCAATCTTAAACTTGAGA+TGG - chr1_3:76753019-76753038 Msa0141570:CDS 25.0%
! GAAGATAAAATTTGAATTGG+AGG - chr1_3:76753052-76753071 Msa0141570:CDS 25.0%
!!! AGAAAAAAGCTCATTTTTGT+AGG - chr1_3:76753188-76753207 Msa0141570:five_prime_UTR 25.0%
! CATATCTTTCATGTGAAAAT+TGG - chr1_3:76753249-76753268 Msa0141570:five_prime_UTR 25.0%
!!! GTAGTACAAGTTTTTTTCAG+AGG - chr1_3:76750181-76750200 Msa0141570:three_prime_UTR 30.0%
AGAGAAATCATTGCTATGTA+TGG + chr1_3:76750213-76750232 None:intergenic 30.0%
GCAATGATTTCTCTACAATT+TGG - chr1_3:76750219-76750238 Msa0141570:three_prime_UTR 30.0%
AACATAAGAAATGTGATCCT+TGG + chr1_3:76750492-76750511 None:intergenic 30.0%
TTTATGCAAATGTTCGTGTT+GGG - chr1_3:76750510-76750529 Msa0141570:three_prime_UTR 30.0%
AGAATTACGAGTATTCTTGA+AGG - chr1_3:76750562-76750581 Msa0141570:three_prime_UTR 30.0%
TGTAAGAAATTTCGACTGTA+GGG + chr1_3:76750597-76750616 None:intergenic 30.0%
TTGTAAGAAATTTCGACTGT+AGG + chr1_3:76750598-76750617 None:intergenic 30.0%
ATCTTGACCGTTATAGATAA+TGG - chr1_3:76750634-76750653 Msa0141570:CDS 30.0%
TTTGTATAATGTCATCACCA+TGG + chr1_3:76751109-76751128 None:intergenic 30.0%
! ATGGTGATGACATTATACAA+AGG - chr1_3:76751108-76751127 Msa0141570:intron 30.0%
! AATTGCTGTGACTTTTGTTA+TGG - chr1_3:76751450-76751469 Msa0141570:intron 30.0%
!! TTTGGTAGTGATTATTAAGG+TGG + chr1_3:76751647-76751666 None:intergenic 30.0%
TTTGCGATAACAAATTAGCA+AGG + chr1_3:76751714-76751733 None:intergenic 30.0%
GAATAGTCATGCAAAAGAAA+GGG - chr1_3:76751971-76751990 Msa0141570:intron 30.0%
ATGATCATTGTCGCAATTAT+GGG - chr1_3:76752027-76752046 Msa0141570:intron 30.0%
GCAGAAAAATTATATCTTGG+AGG - chr1_3:76752063-76752082 Msa0141570:CDS 30.0%
CAGCATCACAATTATAATTG+TGG + chr1_3:76752212-76752231 None:intergenic 30.0%
!! TATTTTCATTGGATTGGACA+AGG + chr1_3:76752289-76752308 None:intergenic 30.0%
! AAAAAAGCACAACATGTGAA+CGG - chr1_3:76752443-76752462 Msa0141570:CDS 30.0%
CGTAGAAAATGGAGTAATAT+TGG - chr1_3:76752630-76752649 Msa0141570:intron 30.0%
ATATTGGAAACAGTGATTGA+AGG - chr1_3:76752646-76752665 Msa0141570:intron 30.0%
! TGAAGCTACTAAAGTGTTAA+GGG - chr1_3:76752705-76752724 Msa0141570:intron 30.0%
TATTATTAGGATTAGGAAGG+GGG - chr1_3:76752766-76752785 Msa0141570:intron 30.0%
CGTTAACGAAAATTGGTTAT+CGG - chr1_3:76752833-76752852 Msa0141570:CDS 30.0%
AAACTATCATGAACGTACTT+AGG - chr1_3:76752856-76752875 Msa0141570:intron 30.0%
! ATGAGAACGATAGATTTGTT+TGG - chr1_3:76752967-76752986 Msa0141570:intron 30.0%
! ATGATCTTGAACTGATTCTT+TGG + chr1_3:76753086-76753105 None:intergenic 30.0%
TATGGTCAGAATTAATGTGT+TGG - chr1_3:76753136-76753155 Msa0141570:CDS 30.0%
GAGAGAAGAAGAAAAATGGA+AGG - chr1_3:76750150-76750169 Msa0141570:three_prime_UTR 35.0%
GAAGAAAAATGGAAGGAGAT+AGG - chr1_3:76750157-76750176 Msa0141570:three_prime_UTR 35.0%
!!! TCTCTACAATTTGGTTTTGC+TGG - chr1_3:76750228-76750247 Msa0141570:three_prime_UTR 35.0%
CTCTCAAGAACAATAGCAAA+TGG + chr1_3:76750348-76750367 None:intergenic 35.0%
!! CATTTGCTATTGTTCTTGAG+AGG - chr1_3:76750346-76750365 Msa0141570:three_prime_UTR 35.0%
! CACACTCTATTTCTTGTCAT+TGG - chr1_3:76750453-76750472 Msa0141570:three_prime_UTR 35.0%
GTTTATGCAAATGTTCGTGT+TGG - chr1_3:76750509-76750528 Msa0141570:three_prime_UTR 35.0%
TTTCTTACAAGCACTTCAGT+CGG - chr1_3:76750608-76750627 Msa0141570:CDS 35.0%
! TATAGGTTCTGATCAATCAC+AGG + chr1_3:76750794-76750813 None:intergenic 35.0%
ATCAGAACCTATACTATGCT+GGG - chr1_3:76750801-76750820 Msa0141570:CDS 35.0%
ATTTCAACCCAGCATAGTAT+AGG + chr1_3:76750811-76750830 None:intergenic 35.0%
TAATAGCACATGAGTAGGTT+GGG + chr1_3:76750841-76750860 None:intergenic 35.0%
ATTGCTAATAGCACATGAGT+AGG + chr1_3:76750846-76750865 None:intergenic 35.0%
!! TTGTCATGGCAGTTATTTTC+AGG - chr1_3:76750885-76750904 Msa0141570:intron 35.0%
! GGAATTTAGGATGGAGAAAT+TGG - chr1_3:76751023-76751042 Msa0141570:intron 35.0%
GAACTGTAATTACAGTTGCT+GGG - chr1_3:76751082-76751101 Msa0141570:intron 35.0%
AACTGTAATTACAGTTGCTG+GGG - chr1_3:76751083-76751102 Msa0141570:intron 35.0%
TGATTCTGGTGAAAAGGATT+GGG - chr1_3:76751200-76751219 Msa0141570:intron 35.0%
!!! TCATGTTTTTTCGTCCTGAA+TGG - chr1_3:76751761-76751780 Msa0141570:intron 35.0%
GATGTAAACTTTGGTGAACA+GGG - chr1_3:76751913-76751932 Msa0141570:CDS 35.0%
GAACAGGGTATAATATCATC+AGG - chr1_3:76751928-76751947 Msa0141570:CDS 35.0%
GACTATTCCTTGAACATAGT+AGG + chr1_3:76751959-76751978 None:intergenic 35.0%
GGAATAGTCATGCAAAAGAA+AGG - chr1_3:76751970-76751989 Msa0141570:intron 35.0%
CTGAAAGCAGTAACAAAAAC+TGG + chr1_3:76751997-76752016 None:intergenic 35.0%
GATGATCATTGTCGCAATTA+TGG - chr1_3:76752026-76752045 Msa0141570:intron 35.0%
CTTTAGTATTGCATCACAAG+TGG - chr1_3:76752244-76752263 Msa0141570:CDS 35.0%
ATTTGTGACTGCAGTGTTAT+TGG - chr1_3:76752505-76752524 Msa0141570:CDS 35.0%
!!! GGAGCTATTTTGATCGTAAT+AGG - chr1_3:76752526-76752545 Msa0141570:CDS 35.0%
TAGGACTTTACTCAGTTCTA+TGG - chr1_3:76752545-76752564 Msa0141570:intron 35.0%
AGGACTTTACTCAGTTCTAT+GGG - chr1_3:76752546-76752565 Msa0141570:intron 35.0%
TGAAGAAGAGACAATAACTG+AGG - chr1_3:76752594-76752613 Msa0141570:intron 35.0%
GAAGAAGAGACAATAACTGA+GGG - chr1_3:76752595-76752614 Msa0141570:intron 35.0%
!! ATGAAGTGTTGCGTAGAAAA+TGG - chr1_3:76752619-76752638 Msa0141570:intron 35.0%
! GTGAAGCTACTAAAGTGTTA+AGG - chr1_3:76752704-76752723 Msa0141570:intron 35.0%
TGGTAGAGAGAATTGATAGA+AGG - chr1_3:76752805-76752824 Msa0141570:CDS 35.0%
! ACAGAAGAGATACATCGTTT+TGG - chr1_3:76752880-76752899 Msa0141570:intron 35.0%
GTAGACTATTGGAGGATTTA+AGG - chr1_3:76752941-76752960 Msa0141570:intron 35.0%
TAAAATTTGAATTGGAGGGC+AGG - chr1_3:76753057-76753076 Msa0141570:CDS 35.0%
AAAATTTGAATTGGAGGGCA+GGG - chr1_3:76753058-76753077 Msa0141570:CDS 35.0%
!! TCAGAATTAATGTGTTGGCT+AGG - chr1_3:76753141-76753160 Msa0141570:CDS 35.0%
!! CAGAATTAATGTGTTGGCTA+GGG - chr1_3:76753142-76753161 Msa0141570:CDS 35.0%
TTAACCCTATAGTTTGAACG+AGG - chr1_3:76753219-76753238 Msa0141570:five_prime_UTR 35.0%
GAACATAGTGACTCATTCCA+CGG + chr1_3:76750284-76750303 None:intergenic 40.0%
! CTCTATTTCTTGTCATTGGC+AGG - chr1_3:76750457-76750476 Msa0141570:three_prime_UTR 40.0%
TTGTCATTGGCAGGAAGATA+AGG - chr1_3:76750466-76750485 Msa0141570:three_prime_UTR 40.0%
ATTTCGACTGTAGGGAATCT+GGG + chr1_3:76750589-76750608 None:intergenic 40.0%
AATTTCGACTGTAGGGAATC+TGG + chr1_3:76750590-76750609 None:intergenic 40.0%
GATCAGAACCTATACTATGC+TGG - chr1_3:76750800-76750819 Msa0141570:CDS 40.0%
AATAGCACATGAGTAGGTTG+GGG + chr1_3:76750840-76750859 None:intergenic 40.0%
CTAATAGCACATGAGTAGGT+TGG + chr1_3:76750842-76750861 None:intergenic 40.0%
CCATGACAAATGTCATTGCT+GGG + chr1_3:76750874-76750893 None:intergenic 40.0%
AGATGCCAAGTAAAGGTGAT+TGG - chr1_3:76751060-76751079 Msa0141570:intron 40.0%
CAGTTCCAATCACCTTTACT+TGG + chr1_3:76751068-76751087 None:intergenic 40.0%
GGAACTGTAATTACAGTTGC+TGG - chr1_3:76751081-76751100 Msa0141570:intron 40.0%
! CCAGAATCAGTAGTGTTTTC+AGG + chr1_3:76751189-76751208 None:intergenic 40.0%
!! CCTGAAAACACTACTGATTC+TGG - chr1_3:76751186-76751205 Msa0141570:intron 40.0%
!! CACTACTGATTCTGGTGAAA+AGG - chr1_3:76751194-76751213 Msa0141570:intron 40.0%
CTGATTCTGGTGAAAAGGAT+TGG - chr1_3:76751199-76751218 Msa0141570:intron 40.0%
AAGCAAAGGTGGCAATTATG+AGG + chr1_3:76751242-76751261 None:intergenic 40.0%
TCATAATTGCCACCTTTGCT+TGG - chr1_3:76751241-76751260 Msa0141570:intron 40.0%
CATAATTGCCACCTTTGCTT+GGG - chr1_3:76751242-76751261 Msa0141570:intron 40.0%
AAATGCAGGCTGTGACATTA+AGG - chr1_3:76751368-76751387 Msa0141570:CDS 40.0%
AATTGATTGAAGTGTGCCCA+AGG + chr1_3:76751434-76751453 None:intergenic 40.0%
!! AAATGCTTGGAGCATTGGTT+GGG - chr1_3:76751483-76751502 Msa0141570:intron 40.0%
TCACAGTCAAATGCGACTAA+TGG - chr1_3:76751608-76751627 Msa0141570:intron 40.0%
! CCAAAAAAGCATGTCCATTC+AGG + chr1_3:76751778-76751797 None:intergenic 40.0%
!!! CCTGAATGGACATGCTTTTT+TGG - chr1_3:76751775-76751794 Msa0141570:intron 40.0%
! TATATCGACTGCAATTTCGC+CGG + chr1_3:76751828-76751847 None:intergenic 40.0%
GGATGTAAACTTTGGTGAAC+AGG - chr1_3:76751912-76751931 Msa0141570:CDS 40.0%
GCGACAATGATCATCATCAA+AGG + chr1_3:76752021-76752040 None:intergenic 40.0%
GGACTTTACTCAGTTCTATG+GGG - chr1_3:76752547-76752566 Msa0141570:intron 40.0%
GGTTGAGCGTTAACGAAAAT+TGG - chr1_3:76752826-76752845 Msa0141570:CDS 40.0%
TAGGCGGTATAGTAGACTAT+TGG - chr1_3:76752930-76752949 Msa0141570:intron 40.0%
TGTGCCTCGTTCAAACTATA+GGG + chr1_3:76753226-76753245 None:intergenic 40.0%
ATGTGCCTCGTTCAAACTAT+AGG + chr1_3:76753227-76753246 None:intergenic 40.0%
ACAAAGGTTTCACTCAACCG+TGG - chr1_3:76750264-76750283 Msa0141570:three_prime_UTR 45.0%
ATGTTCGTGTTGGGACTTCT+CGG - chr1_3:76750519-76750538 Msa0141570:three_prime_UTR 45.0%
CCCAGCAATGACATTTGTCA+TGG - chr1_3:76750871-76750890 Msa0141570:intron 45.0%
GCCATGACAAATGTCATTGC+TGG + chr1_3:76750875-76750894 None:intergenic 45.0%
!! GGTGAAAAGGATTGGGTTGA+AGG - chr1_3:76751207-76751226 Msa0141570:intron 45.0%
GAAGAAAGAAGCCCAAGCAA+AGG + chr1_3:76751256-76751275 None:intergenic 45.0%
GGCTTCTTTCTTCATCCTTC+AGG - chr1_3:76751263-76751282 Msa0141570:CDS 45.0%
ACAGCCATAGTGTGTTCCTT+GGG - chr1_3:76751415-76751434 Msa0141570:intron 45.0%
TGGAGCATAAGCCAAATGCT+TGG - chr1_3:76751470-76751489 Msa0141570:intron 45.0%
AAGCCAAATGCTTGGAGCAT+TGG - chr1_3:76751478-76751497 Msa0141570:intron 45.0%
CAACCAATGCTCCAAGCATT+TGG + chr1_3:76751484-76751503 None:intergenic 45.0%
!! CAAATGCTTGGAGCATTGGT+TGG - chr1_3:76751482-76751501 Msa0141570:intron 45.0%
ATTAAGGTGGTCATCAGTCG+TGG + chr1_3:76751634-76751653 None:intergenic 45.0%
GGTCTGACCTACTATGTTCA+AGG - chr1_3:76751949-76751968 Msa0141570:intron 45.0%
GTGAACGGTGATAAGCACTT+TGG - chr1_3:76752458-76752477 Msa0141570:CDS 45.0%
!!! CATCGTTTTGGAGTGAAGAG+TGG - chr1_3:76752892-76752911 Msa0141570:intron 45.0%
GCGGTATAGTAGACTATTGG+AGG - chr1_3:76752933-76752952 Msa0141570:intron 45.0%
!! AGATTATATAAATATTAATT+TGG + chr1_3:76750935-76750954 None:intergenic 5.0%
!!! AAAATAAAATACTTTTTTAT+TGG + chr1_3:76752125-76752144 None:intergenic 5.0%
TTGGCAGGAAGATAAGGCCA+AGG - chr1_3:76750472-76750491 Msa0141570:three_prime_UTR 50.0%
TGTTCGTGTTGGGACTTCTC+GGG - chr1_3:76750520-76750539 Msa0141570:three_prime_UTR 50.0%
AATTACAGTTGCTGGGGCCA+TGG - chr1_3:76751089-76751108 Msa0141570:intron 50.0%
GAAAGAAGCCCAAGCAAAGG+TGG + chr1_3:76751253-76751272 None:intergenic 50.0%
CACAGCCATAGTGTGTTCCT+TGG - chr1_3:76751414-76751433 Msa0141570:intron 50.0%
TGTGCCCAAGGAACACACTA+TGG + chr1_3:76751422-76751441 None:intergenic 50.0%
GTCTACTATACCGCCTACCA+CGG + chr1_3:76752927-76752946 None:intergenic 50.0%
GGGGGAGAGACTTACAGCAT+AGG + chr1_3:76751530-76751549 None:intergenic 55.0%
!! GGGGTCGTTCTAGCTCAGCA+TGG - chr1_3:76752785-76752804 Msa0141570:intron 60.0%
TGGAGTGAAGAGTGGAGCCG+TGG - chr1_3:76752900-76752919 Msa0141570:intron 60.0%
ATACCGCCTACCACGGTCCA+CGG + chr1_3:76752920-76752939 None:intergenic 60.0%
AAGAGTGGAGCCGTGGACCG+TGG - chr1_3:76752907-76752926 Msa0141570:intron 65.0%
GTGGAGCCGTGGACCGTGGT+AGG - chr1_3:76752911-76752930 Msa0141570:intron 70.0%
GAGCCGTGGACCGTGGTAGG+CGG - chr1_3:76752914-76752933 Msa0141570:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 76750062 76753278 76750062 ID=Msa0141570;Name=Msa0141570
chr1_3 mRNA 76750062 76753278 76750062 ID=Msa0141570-mRNA-1;Parent=Msa0141570;Name=Msa0141570-mRNA-1;_AED=0.13;_eAED=0.13;_QI=103|1|1|1|1|1|7|522|394
chr1_3 exon 76750062 76750821 76750062 ID=Msa0141570-mRNA-1:exon:26753;Parent=Msa0141570-mRNA-1
chr1_3 exon 76751255 76751406 76751255 ID=Msa0141570-mRNA-1:exon:26752;Parent=Msa0141570-mRNA-1
chr1_3 exon 76751806 76751964 76751806 ID=Msa0141570-mRNA-1:exon:26751;Parent=Msa0141570-mRNA-1
chr1_3 exon 76752056 76752308 76752056 ID=Msa0141570-mRNA-1:exon:26750;Parent=Msa0141570-mRNA-1
chr1_3 exon 76752434 76752550 76752434 ID=Msa0141570-mRNA-1:exon:26749;Parent=Msa0141570-mRNA-1
chr1_3 exon 76752799 76752861 76752799 ID=Msa0141570-mRNA-1:exon:26748;Parent=Msa0141570-mRNA-1
chr1_3 exon 76752973 76753278 76752973 ID=Msa0141570-mRNA-1:exon:26747;Parent=Msa0141570-mRNA-1
chr1_3 five_prime_UTR 76753176 76753278 76753176 ID=Msa0141570-mRNA-1:five_prime_utr;Parent=Msa0141570-mRNA-1
chr1_3 CDS 76752973 76753175 76752973 ID=Msa0141570-mRNA-1:cds;Parent=Msa0141570-mRNA-1
chr1_3 CDS 76752799 76752861 76752799 ID=Msa0141570-mRNA-1:cds;Parent=Msa0141570-mRNA-1
chr1_3 CDS 76752434 76752550 76752434 ID=Msa0141570-mRNA-1:cds;Parent=Msa0141570-mRNA-1
chr1_3 CDS 76752056 76752308 76752056 ID=Msa0141570-mRNA-1:cds;Parent=Msa0141570-mRNA-1
chr1_3 CDS 76751806 76751964 76751806 ID=Msa0141570-mRNA-1:cds;Parent=Msa0141570-mRNA-1
chr1_3 CDS 76751255 76751406 76751255 ID=Msa0141570-mRNA-1:cds;Parent=Msa0141570-mRNA-1
chr1_3 CDS 76750584 76750821 76750584 ID=Msa0141570-mRNA-1:cds;Parent=Msa0141570-mRNA-1
chr1_3 three_prime_UTR 76750062 76750583 76750062 ID=Msa0141570-mRNA-1:three_prime_utr;Parent=Msa0141570-mRNA-1
Gene Sequence

>Msa0141570

ATGGAAGGAGATAGGTGTAGTACAAGTTTTTTTCAGAGGTGCAAGCCATACATAGCAATGATTTCTCTACAATTTGGTTTTGCTGGTATGAACATAATAACAAAGGTTTCACTCAACCGTGGAATGAGTCACTATGTTCTTGTTGTTTATAGACATGCTTTTGCTACTGCTGTTATTGCTCCATTTGCTATTGTTCTTGAGAGGAAGATAAGGCCAAGGATCACATTTCTTATGTTTATGCAAATGTTCGTGTTGGGACTTCTCGGGCCTGTGATTGATCAGAACCTATACTATGCTGGGTTGAAATTCACTTCCCCAACCTACTCATGTGCTATTAGCAATATTCTCCCAGCAATGACATTTGTCATGGCAGTTATTTTCAGGATGGAGAAATTGGACATAAAAAAATTAAGATGCCAAGTAAAGGTGATTGGAACTGTAATTACAGTTGCTGGGGCCATGGTGATGACATTATACAAAGGACAAGTTATTAATATATTAAGTTCTCAATACATGCATCATCCTAGAAATTATGAACCTGAAAACACTACTGATTCTGGTGAAAAGGATTGGGTTGAAGGTTCTATTCTCCTCATAATTGCCACCTTTGCTTGGGCTTCTTTCTTCATCCTTCAGGCTGTGACATTAAGGAAATATTCAGCTCAGCTCTCACTCACAGCCATAGTGTGTTCCTTGGGCACACTTCAATCAATTGCTGTGACTTTTGTTATGGAGCATAAGCCAAATGCTTGGAGCATTGGTTGGGACATGAACTTATTAGCTGCAGCCTATGCTGGTATAATATCATCAGGTCTGACCTACTATGTTCAAGGAATAGTCATGCAAAAGAAAGGGCCAGTTTTTGTTACTGCTTTCAGTCCTTTGATGATGATCATTGTCGCAATTATGGGCACTTTCATCCTTGCAGAAAAATTATATCTTGGAGGTGTTATTGGAGCTATTTTGATCGTAATAGGACTTTACTCAGTTCTATGGGGCAAAAGCAAAGAAAATAAAGAGATTGAAGAAGAGACAATAACTGAGGGAATGAAGTGTTGCGTAGAAAATGGAGTAATATTGGAAACAGTGATTGAAGGTGTTGAAGAAACAAATGATATTGAAATGCAAAAGGGTGAAGCTACTAAAGTGTTAAGGGTAGCAATTATTAGTGTTCCAAAAGTTTAA
Protein sequence

>Msa0141570

MEGDRCSTSFFQRCKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNILPAMTFVMAVIFRMEKLDIKKLRCQVKVIGTVITVAGAMVMTLYKGQVINILSSQYMHHPRNYEPENTTDSGEKDWVEGSILLIIATFAWASFFILQAVTLRKYSAQLSLTAIVCSLGTLQSIAVTFVMEHKPNAWSIGWDMNLLAAAYAGIISSGLTYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGTFILAEKLYLGGVIGAILIVIGLYSVLWGKSKENKEIEEETITEGMKCCVENGVILETVIEGVEETNDIEMQKGEATKVLRVAIISVPKV*