Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141790 | sp|Q6DFI2|TM147_XENLA | 37.059 | 170 | 97 | 5 | 1 | 166 | 1 | 164 | 3.22e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141790 | G7J5Q0 | 99.123 | 228 | 2 | 0 | 1 | 228 | 1 | 228 | 1.46e-163 | 460 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0141790 | Msa0380130 | 0.807476 | 4.962537e-50 | -8.615850e-47 |
| Msa0141790 | Msa0429470 | 0.810633 | 1.046053e-50 | -8.615850e-47 |
| Msa0141790 | Msa0429580 | 0.913056 | 9.572393e-84 | -8.615850e-47 |
| Msa0141790 | Msa0623450 | 0.809531 | 1.807088e-50 | -8.615850e-47 |
| Msa0141790 | Msa1269530 | 0.818641 | 1.763278e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141790 | MtrunA17_Chr3g0133291 | 99.123 | 228 | 2 | 0 | 1 | 228 | 1 | 228 | 2.81e-167 | 460 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141790 | AT1G47640.1 | 86.344 | 227 | 31 | 0 | 1 | 227 | 1 | 227 | 5.33e-147 | 409 |
Find 71 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTCCATTCCATATCTT+TGG | 0.207710 | 1_4:+532110 | Msa0141790:three_prime_UTR |
| TGCATAGGTTGGCTCCTCTT+TGG | 0.231286 | 1_4:+530572 | Msa0141790:CDS |
| CCTAGAGGCTAATGCAAATT+TGG | 0.264750 | 1_4:+530642 | Msa0141790:CDS |
| TAATAAAATCCAGGGTGTTT+TGG | 0.297926 | 1_4:+532315 | Msa0141790:three_prime_UTR |
| AACATCAATAAAACCTATTA+AGG | 0.298184 | 1_4:-530280 | None:intergenic |
| GCTCCATTGTCTGCTTCTTT+TGG | 0.299649 | 1_4:+531933 | Msa0141790:three_prime_UTR |
| GCATAGGTTGGCTCCTCTTT+GGG | 0.301668 | 1_4:+530573 | Msa0141790:CDS |
| CCAGCACACAAGTATATAAT+AGG | 0.316254 | 1_4:-530993 | None:intergenic |
| AGCTCAAAACCGACCACTTT+GGG | 0.322717 | 1_4:-531783 | None:intergenic |
| TCTCTGCCAGCTTATTTGTT+TGG | 0.326986 | 1_4:+529046 | Msa0141790:intron |
| GAGCATATCCCTCGCTGGAC+TGG | 0.334400 | 1_4:+530926 | Msa0141790:CDS |
| TACATGTTACACACCTGATA+TGG | 0.335870 | 1_4:-529107 | None:intergenic |
| AACTGTGCGATTCTCACTTT+CGG | 0.343965 | 1_4:+528715 | Msa0141790:CDS |
| GGGTCTTGGGTTTATTCTTT+CGG | 0.344658 | 1_4:-530965 | None:intergenic |
| AGATATTTCTGTGAGTCAAC+TGG | 0.359727 | 1_4:-530326 | None:intergenic |
| AGCTATTTGAGACGTGGATT+GGG | 0.361113 | 1_4:+531750 | Msa0141790:intron |
| CTAGAGGATTAGAATTTACT+TGG | 0.367682 | 1_4:+530602 | Msa0141790:CDS |
| CAGCTATTTGAGACGTGGAT+TGG | 0.383715 | 1_4:+531749 | Msa0141790:intron |
| CCAAATTTGCATTAGCCTCT+AGG | 0.391836 | 1_4:-530642 | None:intergenic |
| GCTAAGATAAACCAAAGATA+TGG | 0.400423 | 1_4:-532121 | None:intergenic |
| AGTAAAGACCTTGTGATAGA+TGG | 0.402554 | 1_4:-531032 | None:intergenic |
| CCTATTATATACTTGTGTGC+TGG | 0.408006 | 1_4:+530993 | Msa0141790:CDS |
| CTATTATATACTTGTGTGCT+GGG | 0.411762 | 1_4:+530994 | Msa0141790:CDS |
| AGCATATCCCTCGCTGGACT+GGG | 0.422684 | 1_4:+530927 | Msa0141790:CDS |
| TGATAGCTTTGATCCATATC+AGG | 0.429031 | 1_4:+529094 | Msa0141790:CDS |
| TATAATAGGAATGAGGGTCT+TGG | 0.441236 | 1_4:-530979 | None:intergenic |
| ATAATAGGAATGAGGGTCTT+GGG | 0.442787 | 1_4:-530978 | None:intergenic |
| AATCACAAGTTTCAAGCAGT+TGG | 0.445704 | 1_4:+530354 | Msa0141790:CDS |
| CCTCTTTGGGTGGGTGCTAG+AGG | 0.451531 | 1_4:+530586 | Msa0141790:CDS |
| AACAACTAATAATAAAATCC+AGG | 0.456732 | 1_4:+532306 | Msa0141790:three_prime_UTR |
| GAGCTCAAAACCGACCACTT+TGG | 0.467128 | 1_4:-531784 | None:intergenic |
| GCTCTTCACATCCTTGGTGA+TGG | 0.469782 | 1_4:+531803 | Msa0141790:CDS |
| TCGCTGGACTGGGATCTGAT+TGG | 0.478355 | 1_4:+530937 | Msa0141790:CDS |
| AAAGAGAAAGAGAAAGAGAA+AGG | 0.486114 | 1_4:+528617 | Msa0141790:five_prime_UTR |
| AGGTTGGCTCCTCTTTGGGT+GGG | 0.487173 | 1_4:+530577 | Msa0141790:CDS |
| AAGTTTCAAGCAGTTGGACT+TGG | 0.494155 | 1_4:+530360 | Msa0141790:CDS |
| TCTGTGAGTCAACTGGGTTA+AGG | 0.496836 | 1_4:-530319 | None:intergenic |
| AGAGAAAGAGAAAGGTGAAG+TGG | 0.502932 | 1_4:+528625 | Msa0141790:five_prime_UTR |
| ACTGGGTTAAGGCAAAATAA+AGG | 0.503580 | 1_4:-530308 | None:intergenic |
| TAGGTTGGCTCCTCTTTGGG+TGG | 0.506863 | 1_4:+530576 | Msa0141790:CDS |
| TACTCAGAAAATAGTTATGT+AGG | 0.518456 | 1_4:-531903 | None:intergenic |
| GATAAACCAAAGATATGGAA+TGG | 0.524667 | 1_4:-532116 | None:intergenic |
| TCTCGCTACAGCATTAGTAA+AGG | 0.526454 | 1_4:+528928 | Msa0141790:CDS |
| CTGGACTGGGATCTGATTGG+TGG | 0.535784 | 1_4:+530940 | Msa0141790:CDS |
| ACAAGTATATAATAGGAATG+AGG | 0.541413 | 1_4:-530986 | None:intergenic |
| TTCTGCAGCTATTTGAGACG+TGG | 0.544622 | 1_4:+531744 | Msa0141790:intron |
| TGATTCTGTACTGCATAGGT+TGG | 0.545086 | 1_4:+530561 | Msa0141790:CDS |
| GATATTTCTGTGAGTCAACT+GGG | 0.551092 | 1_4:-530325 | None:intergenic |
| GCGGAGTAGTAGACGGCGTG+AGG | 0.553841 | 1_4:-528739 | None:intergenic |
| CTGCCAAAAGAAGCAGACAA+TGG | 0.556661 | 1_4:-531936 | None:intergenic |
| CAAGTATATAATAGGAATGA+GGG | 0.557618 | 1_4:-530985 | None:intergenic |
| TTGCTGATTCTGTACTGCAT+AGG | 0.570050 | 1_4:+530557 | Msa0141790:CDS |
| TGGCATCTTCCCAAAGTGGT+CGG | 0.572570 | 1_4:+531774 | Msa0141790:CDS |
| CCTCTAGCACCCACCCAAAG+AGG | 0.575616 | 1_4:-530586 | None:intergenic |
| ACAACTAATAATAAAATCCA+GGG | 0.580652 | 1_4:+532307 | Msa0141790:three_prime_UTR |
| TAGAGGATTAGAATTTACTT+GGG | 0.589952 | 1_4:+530603 | Msa0141790:CDS |
| AGACCTTGTGATAGATGGCA+TGG | 0.593404 | 1_4:-531027 | None:intergenic |
| ATCAGATCCCAGTCCAGCGA+GGG | 0.598514 | 1_4:-530934 | None:intergenic |
| TAGCAGCTTTCTCAAGCTGA+AGG | 0.600485 | 1_4:-531864 | None:intergenic |
| ATTTGAGACGTGGATTGGGG+TGG | 0.610413 | 1_4:+531754 | Msa0141790:CDS |
| GCTATTTGAGACGTGGATTG+GGG | 0.613941 | 1_4:+531751 | Msa0141790:intron |
| AGGTGTGGCGGAGTAGTAGA+CGG | 0.628616 | 1_4:-528746 | None:intergenic |
| CTACCATGCCATCTATCACA+AGG | 0.634671 | 1_4:+531024 | Msa0141790:CDS |
| AAAAGATCAGAATCAGATGA+CGG | 0.640988 | 1_4:+528678 | Msa0141790:exon |
| CGGAGTAGTAGACGGCGTGA+GGG | 0.654035 | 1_4:-528738 | None:intergenic |
| AGATCTGAGTATGATACACT+CGG | 0.676121 | 1_4:+528878 | Msa0141790:intron |
| GGGGTGGCATCTTCCCAAAG+TGG | 0.678666 | 1_4:+531770 | Msa0141790:CDS |
| AAGTACTTACAAAGGTGTGG+CGG | 0.688668 | 1_4:-528758 | None:intergenic |
| ACTTATAAAAGCCATCACCA+AGG | 0.688750 | 1_4:-531814 | None:intergenic |
| AATCAGATCCCAGTCCAGCG+AGG | 0.703058 | 1_4:-530935 | None:intergenic |
| TGTAGCGAGATAAACAACTG+CGG | 0.776602 | 1_4:-528915 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTATCATAATAAAT+AGG | - | chr1_4:529961-529980 | None:intergenic | 10.0% |
| !!! | GTTTTTCCTAAATTATAATA+AGG | + | chr1_4:529161-529180 | Msa0141790:intron | 15.0% |
| !!! | AACTAATTTAAAGGTATTTT+GGG | - | chr1_4:529359-529378 | None:intergenic | 15.0% |
| !!! | AAACTAATTTAAAGGTATTT+TGG | - | chr1_4:529360-529379 | None:intergenic | 15.0% |
| !! | TGAGATAATTACTATAATTA+CGG | + | chr1_4:529393-529412 | Msa0141790:intron | 15.0% |
| !! | TTTATCATAATAAATAGGAA+TGG | - | chr1_4:529956-529975 | None:intergenic | 15.0% |
| !! | CTATAAGAATATATGAAAAT+TGG | - | chr1_4:530188-530207 | None:intergenic | 15.0% |
| !! | ACAACAAACATAATAAAATA+TGG | - | chr1_4:530215-530234 | None:intergenic | 15.0% |
| !!! | TTTTATAATCCAACATTAAT+TGG | + | chr1_4:530768-530787 | Msa0141790:intron | 15.0% |
| !! | TACCACAAAAAAAAATTAAT+AGG | - | chr1_4:532045-532064 | None:intergenic | 15.0% |
| !! | TATTAGTTAGAGAGTTAATT+AGG | - | chr1_4:529000-529019 | None:intergenic | 20.0% |
| !! | ACTACACCTTATTATAATTT+AGG | - | chr1_4:529170-529189 | None:intergenic | 20.0% |
| !! | CCATTAAGAAACTAATTTAA+AGG | - | chr1_4:529368-529387 | None:intergenic | 20.0% |
| !!! | CCTTTAAATTAGTTTCTTAA+TGG | + | chr1_4:529365-529384 | Msa0141790:intron | 20.0% |
| !! | GAGATAATTACTATAATTAC+GGG | + | chr1_4:529394-529413 | Msa0141790:intron | 20.0% |
| !! | AAATTATCTCCTAATTACAT+TGG | - | chr1_4:529559-529578 | None:intergenic | 20.0% |
| !! | TAAATAAACAAAAGATAGCA+CGG | - | chr1_4:529810-529829 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGTTTGTTGTC+TGG | + | chr1_4:530216-530235 | Msa0141790:intron | 20.0% |
| !! | AACATCAATAAAACCTATTA+AGG | - | chr1_4:530283-530302 | None:intergenic | 20.0% |
| !!! | TTTTAAATTTATGTGCATCT+TGG | + | chr1_4:530423-530442 | Msa0141790:intron | 20.0% |
| !! | TGTAAAAAATTCAAAACTCT+AGG | - | chr1_4:530706-530725 | None:intergenic | 20.0% |
| !!! | TTTTTACAATCCACATTAAT+TGG | + | chr1_4:530718-530737 | Msa0141790:intron | 20.0% |
| !!! | AATGATTTAAAACAAGAAGA+GGG | + | chr1_4:531238-531257 | Msa0141790:intron | 20.0% |
| !!! | TGAATTTTAAATAAACTGCA+TGG | - | chr1_4:531965-531984 | None:intergenic | 20.0% |
| !!! | TACTTTTGTTTCAAAACAAT+TGG | + | chr1_4:532148-532167 | Msa0141790:three_prime_UTR | 20.0% |
| !!! | TTGTTTTCTAATTGTATCTT+TGG | + | chr1_4:532200-532219 | Msa0141790:three_prime_UTR | 20.0% |
| !! | AACAACTAATAATAAAATCC+AGG | + | chr1_4:532306-532325 | Msa0141790:three_prime_UTR | 20.0% |
| !! | ACAACTAATAATAAAATCCA+GGG | + | chr1_4:532307-532326 | Msa0141790:three_prime_UTR | 20.0% |
| !!! | TTTTGTAGTATATTTACTCA+AGG | + | chr1_4:532372-532391 | Msa0141790:three_prime_UTR | 20.0% |
| !!! | GAATGAAAAAGTACTTACAA+AGG | - | chr1_4:528769-528788 | None:intergenic | 25.0% |
| ! | TTAGGTTTGAAGATGTAAAA+AGG | - | chr1_4:528982-529001 | None:intergenic | 25.0% |
| ! | TTCTTAAGTGTGATAAATGA+TGG | + | chr1_4:529577-529596 | Msa0141790:intron | 25.0% |
| !! | GATTTTCTTATAACTGTTCA+TGG | + | chr1_4:529622-529641 | Msa0141790:intron | 25.0% |
| ! | TTAAATCATTATCTCTAGCA+GGG | - | chr1_4:529683-529702 | None:intergenic | 25.0% |
| ! | TTTAAATCATTATCTCTAGC+AGG | - | chr1_4:529684-529703 | None:intergenic | 25.0% |
| !! | TAGAGATAATGATTTAAAGC+AGG | + | chr1_4:529686-529705 | Msa0141790:intron | 25.0% |
| !! | AGAGATAATGATTTAAAGCA+GGG | + | chr1_4:529687-529706 | Msa0141790:intron | 25.0% |
| ! | AAATAAACAAAAGATAGCAC+GGG | - | chr1_4:529809-529828 | None:intergenic | 25.0% |
| !!! | CGTTTGGTATATTTTGTTTA+TGG | + | chr1_4:529875-529894 | Msa0141790:intron | 25.0% |
| ! | ACTTAAATTTCAGCATAAGT+AGG | + | chr1_4:529977-529996 | Msa0141790:intron | 25.0% |
| !!! | TCTGTTTTGAGAAATTACAA+TGG | + | chr1_4:530142-530161 | Msa0141790:intron | 25.0% |
| !! | TTGTCTGGAATAATAACAAA+TGG | + | chr1_4:530231-530250 | Msa0141790:intron | 25.0% |
| !!! | TGTTTTTCAGGAATTTTTGA+AGG | + | chr1_4:530257-530276 | Msa0141790:intron | 25.0% |
| ! | TAGAGGATTAGAATTTACTT+GGG | + | chr1_4:530603-530622 | Msa0141790:CDS | 25.0% |
| ! | TGCATTATTCCAATTAATGT+TGG | - | chr1_4:530780-530799 | None:intergenic | 25.0% |
| ! | CAAGTATATAATAGGAATGA+GGG | - | chr1_4:530988-531007 | None:intergenic | 25.0% |
| ! | ACAAGTATATAATAGGAATG+AGG | - | chr1_4:530989-531008 | None:intergenic | 25.0% |
| !!! | ACTGATGTCATTTTAATTTG+AGG | + | chr1_4:531100-531119 | Msa0141790:intron | 25.0% |
| !!! | TTCTTGTTTTAAATCATTGC+AGG | - | chr1_4:531236-531255 | None:intergenic | 25.0% |
| !! | CAATGATTTAAAACAAGAAG+AGG | + | chr1_4:531237-531256 | Msa0141790:intron | 25.0% |
| ! | TTGTACTAAATAACATATCG+TGG | - | chr1_4:531438-531457 | None:intergenic | 25.0% |
| ! | TACTCAGAAAATAGTTATGT+AGG | - | chr1_4:531906-531925 | None:intergenic | 25.0% |
| !!! | CGCCTATTAATTTTTTTTTG+TGG | + | chr1_4:532040-532059 | Msa0141790:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTGTGGTAGAATGT+TGG | + | chr1_4:532051-532070 | Msa0141790:three_prime_UTR | 25.0% |
| AAAGAGAAAGAGAAAGAGAA+AGG | + | chr1_4:528617-528636 | Msa0141790:five_prime_UTR | 30.0% | |
| AAAAGATCAGAATCAGATGA+CGG | + | chr1_4:528678-528697 | Msa0141790:exon | 30.0% | |
| !! | AAAAAGTACTTACAAAGGTG+TGG | - | chr1_4:528764-528783 | None:intergenic | 30.0% |
| ! | AGTTTTCATGATGCGAAATT+GGG | - | chr1_4:528828-528847 | None:intergenic | 30.0% |
| ! | TAGTTTTCATGATGCGAAAT+TGG | - | chr1_4:528829-528848 | None:intergenic | 30.0% |
| TCCTTAATAAGTGTGAAAGT+AGG | + | chr1_4:529479-529498 | Msa0141790:intron | 30.0% | |
| ACCTACTTTCACACTTATTA+AGG | - | chr1_4:529483-529502 | None:intergenic | 30.0% | |
| TATCTCCTAATTACATTGGA+GGG | - | chr1_4:529555-529574 | None:intergenic | 30.0% | |
| TTATCTCCTAATTACATTGG+AGG | - | chr1_4:529556-529575 | None:intergenic | 30.0% | |
| TGGATACAAGAGAATATTTG+TGG | + | chr1_4:529597-529616 | Msa0141790:intron | 30.0% | |
| ATACAAGAGAATATTTGTGG+AGG | + | chr1_4:529600-529619 | Msa0141790:intron | 30.0% | |
| ! | TAATGATTTAAAGCAGGGAT+AGG | + | chr1_4:529692-529711 | Msa0141790:intron | 30.0% |
| ! | AATGATTTAAAGCAGGGATA+GGG | + | chr1_4:529693-529712 | Msa0141790:intron | 30.0% |
| !!! | TAGCCAATCATTTTGAGTTT+GGG | + | chr1_4:529728-529747 | Msa0141790:intron | 30.0% |
| AATCCCAAACTCAAAATGAT+TGG | - | chr1_4:529734-529753 | None:intergenic | 30.0% | |
| !!! | ATCATTTTGAGTTTGGGATT+TGG | + | chr1_4:529734-529753 | Msa0141790:intron | 30.0% |
| !!! | TCATTTTGAGTTTGGGATTT+GGG | + | chr1_4:529735-529754 | Msa0141790:intron | 30.0% |
| CAAAATATACCAAACGCTTA+AGG | - | chr1_4:529871-529890 | None:intergenic | 30.0% | |
| CATAATAAATAGGAATGGCA+AGG | - | chr1_4:529951-529970 | None:intergenic | 30.0% | |
| TAAATTTCAGCATAAGTAGG+CGG | + | chr1_4:529980-529999 | Msa0141790:intron | 30.0% | |
| !!! | AACAAATGGCTTTGTTTTTC+AGG | + | chr1_4:530245-530264 | Msa0141790:intron | 30.0% |
| !! | GAATTTTTGAAGGCCTTAAT+AGG | + | chr1_4:530267-530286 | Msa0141790:CDS | 30.0% |
| !!! | ATAGGTTTTATTGATGTTGC+TGG | + | chr1_4:530285-530304 | Msa0141790:CDS | 30.0% |
| CTAGAGGATTAGAATTTACT+TGG | + | chr1_4:530602-530621 | Msa0141790:CDS | 30.0% | |
| ! | CTGTGTTATTCCAATTAATG+TGG | - | chr1_4:530731-530750 | None:intergenic | 30.0% |
| AGTTTGTCAATGTTGTTATG+TGG | + | chr1_4:530802-530821 | Msa0141790:intron | 30.0% | |
| TCAATGTTGTTATGTGGTAT+AGG | + | chr1_4:530808-530827 | Msa0141790:intron | 30.0% | |
| CTATTATATACTTGTGTGCT+GGG | + | chr1_4:530994-531013 | Msa0141790:CDS | 30.0% | |
| CTATATAACAACACTCATTG+AGG | - | chr1_4:531367-531386 | None:intergenic | 30.0% | |
| GTGTTTCAAATAGATTACAG+TGG | + | chr1_4:531459-531478 | Msa0141790:intron | 30.0% | |
| ! | TGATAAAAGACCTGTCTTTT+TGG | + | chr1_4:531620-531639 | Msa0141790:intron | 30.0% |
| ! | AATCACTGGTCTATTAGATA+TGG | + | chr1_4:531647-531666 | Msa0141790:intron | 30.0% |
| GATAAACCAAAGATATGGAA+TGG | - | chr1_4:532119-532138 | None:intergenic | 30.0% | |
| GCTAAGATAAACCAAAGATA+TGG | - | chr1_4:532124-532143 | None:intergenic | 30.0% | |
| !!! | TTAAGATGACTGTTTTAACG+AGG | + | chr1_4:532229-532248 | Msa0141790:three_prime_UTR | 30.0% |
| !! | TAATAAAATCCAGGGTGTTT+TGG | + | chr1_4:532315-532334 | Msa0141790:three_prime_UTR | 30.0% |
| ! | TTTTCATGATGCGAAATTGG+GGG | - | chr1_4:528826-528845 | None:intergenic | 35.0% |
| ! | GTTTTCATGATGCGAAATTG+GGG | - | chr1_4:528827-528846 | None:intergenic | 35.0% |
| AGATCTGAGTATGATACACT+CGG | + | chr1_4:528878-528897 | Msa0141790:intron | 35.0% | |
| AAGTAGCCAAACAAATAAGC+TGG | - | chr1_4:529055-529074 | None:intergenic | 35.0% | |
| !!! | TTGTTTGGCTACTTTTCTCA+AGG | + | chr1_4:529061-529080 | Msa0141790:CDS | 35.0% |
| !! | TGATAGCTTTGATCCATATC+AGG | + | chr1_4:529094-529113 | Msa0141790:CDS | 35.0% |
| TACATGTTACACACCTGATA+TGG | - | chr1_4:529110-529129 | None:intergenic | 35.0% | |
| AGATACCCTCCAATGTAATT+AGG | + | chr1_4:529547-529566 | Msa0141790:intron | 35.0% | |
| TTATAACTGTTCATGGTAGC+TGG | + | chr1_4:529629-529648 | Msa0141790:intron | 35.0% | |
| TATAACTGTTCATGGTAGCT+GGG | + | chr1_4:529630-529649 | Msa0141790:intron | 35.0% | |
| !!! | GTAGCCAATCATTTTGAGTT+TGG | + | chr1_4:529727-529746 | Msa0141790:intron | 35.0% |
| AGATACTGCAGAATCTTGAA+GGG | - | chr1_4:529783-529802 | None:intergenic | 35.0% | |
| ! | CATCTAAAACCTTAAGCGTT+TGG | + | chr1_4:529859-529878 | Msa0141790:intron | 35.0% |
| TATCAATGCATAAAGCCCAA+AGG | + | chr1_4:530013-530032 | Msa0141790:intron | 35.0% | |
| ATCAATGCATAAAGCCCAAA+GGG | + | chr1_4:530014-530033 | Msa0141790:intron | 35.0% | |
| ! | GCCTAAAAGCTTAAGCTTTT+GGG | + | chr1_4:530084-530103 | Msa0141790:intron | 35.0% |
| ! | TCCCAAAAGCTTAAGCTTTT+AGG | - | chr1_4:530088-530107 | None:intergenic | 35.0% |
| ACTGGGTTAAGGCAAAATAA+AGG | - | chr1_4:530311-530330 | None:intergenic | 35.0% | |
| ! | GATATTTCTGTGAGTCAACT+GGG | - | chr1_4:530328-530347 | None:intergenic | 35.0% |
| ! | AGATATTTCTGTGAGTCAAC+TGG | - | chr1_4:530329-530348 | None:intergenic | 35.0% |
| AATCACAAGTTTCAAGCAGT+TGG | + | chr1_4:530354-530373 | Msa0141790:CDS | 35.0% | |
| AATAGCAAAAGAAACACCAG+AGG | - | chr1_4:530482-530501 | None:intergenic | 35.0% | |
| CTTCTCTAACTTTCACTTGT+CGG | + | chr1_4:530505-530524 | Msa0141790:intron | 35.0% | |
| TTTCTGCACTTTATCTGTAC+AGG | + | chr1_4:530899-530918 | Msa0141790:intron | 35.0% | |
| ATAATAGGAATGAGGGTCTT+GGG | - | chr1_4:530981-531000 | None:intergenic | 35.0% | |
| TATAATAGGAATGAGGGTCT+TGG | - | chr1_4:530982-531001 | None:intergenic | 35.0% | |
| CCAGCACACAAGTATATAAT+AGG | - | chr1_4:530996-531015 | None:intergenic | 35.0% | |
| CCTATTATATACTTGTGTGC+TGG | + | chr1_4:530993-531012 | Msa0141790:CDS | 35.0% | |
| AGTAAAGACCTTGTGATAGA+TGG | - | chr1_4:531035-531054 | None:intergenic | 35.0% | |
| ! | TCTAGCACTCACTCTTTTAT+TGG | + | chr1_4:531155-531174 | Msa0141790:intron | 35.0% |
| TGAGAAGAAAAATCCCAGTT+AGG | - | chr1_4:531305-531324 | None:intergenic | 35.0% | |
| GTGATTCTATCCAAAAAGAC+AGG | - | chr1_4:531633-531652 | None:intergenic | 35.0% | |
| ! | GTCTTTTTGGATAGAATCAC+TGG | + | chr1_4:531633-531652 | Msa0141790:intron | 35.0% |
| AAACACTACGCTACAGTAAA+TGG | - | chr1_4:531711-531730 | None:intergenic | 35.0% | |
| ACTTATAAAAGCCATCACCA+AGG | - | chr1_4:531817-531836 | None:intergenic | 35.0% | |
| !!! | TGGTGATGGCTTTTATAAGT+TGG | + | chr1_4:531817-531836 | Msa0141790:CDS | 35.0% |
| TTCTCTCCATTCCATATCTT+TGG | + | chr1_4:532110-532129 | Msa0141790:three_prime_UTR | 35.0% | |
| AGAGAAAGAGAAAGGTGAAG+TGG | + | chr1_4:528625-528644 | Msa0141790:five_prime_UTR | 40.0% | |
| AACTGTGCGATTCTCACTTT+CGG | + | chr1_4:528715-528734 | Msa0141790:CDS | 40.0% | |
| ! | AAGTACTTACAAAGGTGTGG+CGG | - | chr1_4:528761-528780 | None:intergenic | 40.0% |
| TGTAGCGAGATAAACAACTG+CGG | - | chr1_4:528918-528937 | None:intergenic | 40.0% | |
| TCTCGCTACAGCATTAGTAA+AGG | + | chr1_4:528928-528947 | Msa0141790:CDS | 40.0% | |
| ACAAATAAGCTGGCAGAGAA+AGG | - | chr1_4:529045-529064 | None:intergenic | 40.0% | |
| TCTCTGCCAGCTTATTTGTT+TGG | + | chr1_4:529046-529065 | Msa0141790:intron | 40.0% | |
| ! | AGCTCTAATTCCTTCCATTC+TGG | + | chr1_4:529194-529213 | Msa0141790:intron | 40.0% |
| TCTAATTCCTTCCATTCTGG+AGG | + | chr1_4:529197-529216 | Msa0141790:intron | 40.0% | |
| CTAATTCCTTCCATTCTGGA+GGG | + | chr1_4:529198-529217 | Msa0141790:intron | 40.0% | |
| CACAAGAGTGAAGCATGAAA+TGG | - | chr1_4:529261-529280 | None:intergenic | 40.0% | |
| ATAACTGTTCATGGTAGCTG+GGG | + | chr1_4:529631-529650 | Msa0141790:intron | 40.0% | |
| GATACTGCAGAATCTTGAAG+GGG | - | chr1_4:529782-529801 | None:intergenic | 40.0% | |
| GAGATACTGCAGAATCTTGA+AGG | - | chr1_4:529784-529803 | None:intergenic | 40.0% | |
| ! | CGCCTAAAAGCTTAAGCTTT+TGG | + | chr1_4:530083-530102 | Msa0141790:intron | 40.0% |
| !!! | GCTTAAGCTTTTGGGATAGA+TGG | + | chr1_4:530092-530111 | Msa0141790:intron | 40.0% |
| !!! | CTTTTGGGATAGATGGTTCA+TGG | + | chr1_4:530099-530118 | Msa0141790:intron | 40.0% |
| AAGTTTCAAGCAGTTGGACT+TGG | + | chr1_4:530360-530379 | Msa0141790:CDS | 40.0% | |
| TGATGTTCTCCTTCCTTGAT+CGG | + | chr1_4:530456-530475 | Msa0141790:intron | 40.0% | |
| !! | TTGCTGATTCTGTACTGCAT+AGG | + | chr1_4:530557-530576 | Msa0141790:CDS | 40.0% |
| TGATTCTGTACTGCATAGGT+TGG | + | chr1_4:530561-530580 | Msa0141790:CDS | 40.0% | |
| !! | TACTTGGGAGTACATTTTGC+AGG | + | chr1_4:530618-530637 | Msa0141790:CDS | 40.0% |
| !! | ACTTGGGAGTACATTTTGCA+GGG | + | chr1_4:530619-530638 | Msa0141790:CDS | 40.0% |
| ! | CCAAATTTGCATTAGCCTCT+AGG | - | chr1_4:530645-530664 | None:intergenic | 40.0% |
| CCTAGAGGCTAATGCAAATT+TGG | + | chr1_4:530642-530661 | Msa0141790:CDS | 40.0% | |
| !! | TTGGTACGTTCTTTAGCTCT+CGG | + | chr1_4:530661-530680 | Msa0141790:intron | 40.0% |
| GGGTCTTGGGTTTATTCTTT+CGG | - | chr1_4:530968-530987 | None:intergenic | 40.0% | |
| ! | GCACTCACTCTTTTATTGGA+TGG | + | chr1_4:531159-531178 | Msa0141790:intron | 40.0% |
| CAAATAGAACCCACACAATG+TGG | - | chr1_4:531202-531221 | None:intergenic | 40.0% | |
| TGTTGCTAACACTACCTAAC+TGG | + | chr1_4:531288-531307 | Msa0141790:intron | 40.0% | |
| GTTGCTAACACTACCTAACT+GGG | + | chr1_4:531289-531308 | Msa0141790:intron | 40.0% | |
| GCTATAGCGCAATTGTTTAG+TGG | + | chr1_4:531389-531408 | Msa0141790:intron | 40.0% | |
| GCTATAGCATTGTAGCATAG+TGG | + | chr1_4:531483-531502 | Msa0141790:intron | 40.0% | |
| GGAGAAAGAGAGGTAAAAGT+TGG | - | chr1_4:531572-531591 | None:intergenic | 40.0% | |
| GGTCTATTAGATATGGTGCT+TGG | + | chr1_4:531654-531673 | Msa0141790:intron | 40.0% | |
| ! | AGCTATTTGAGACGTGGATT+GGG | + | chr1_4:531750-531769 | Msa0141790:intron | 40.0% |
| ! | TTTTGAGCTCTTCACATCCT+TGG | + | chr1_4:531797-531816 | Msa0141790:CDS | 40.0% |
| CAAAAAACACCAAAACACCC+TGG | - | chr1_4:532327-532346 | None:intergenic | 40.0% | |
| ATCATTGCCATCTGCTCTCT+TGG | - | chr1_4:529527-529546 | None:intergenic | 45.0% | |
| TCTGTGAGTCAACTGGGTTA+AGG | - | chr1_4:530322-530341 | None:intergenic | 45.0% | |
| CTACCATGCCATCTATCACA+AGG | + | chr1_4:531024-531043 | Msa0141790:CDS | 45.0% | |
| AGACCTTGTGATAGATGGCA+TGG | - | chr1_4:531030-531049 | None:intergenic | 45.0% | |
| TATGTCCCACCACATTGTGT+GGG | + | chr1_4:531190-531209 | Msa0141790:intron | 45.0% | |
| TAGAACCCACACAATGTGGT+GGG | - | chr1_4:531198-531217 | None:intergenic | 45.0% | |
| ATAGAACCCACACAATGTGG+TGG | - | chr1_4:531199-531218 | None:intergenic | 45.0% | |
| ! | CTCATTGAGGCTTTTGTGCT+TGG | - | chr1_4:531354-531373 | None:intergenic | 45.0% |
| GAAGCCAGTGTTGTCAATAG+CGG | - | chr1_4:531538-531557 | None:intergenic | 45.0% | |
| TATCTACGCAGCAACAGACT+CGG | - | chr1_4:531593-531612 | None:intergenic | 45.0% | |
| ! | TTCTGCAGCTATTTGAGACG+TGG | + | chr1_4:531744-531763 | Msa0141790:intron | 45.0% |
| ! | CAGCTATTTGAGACGTGGAT+TGG | + | chr1_4:531749-531768 | Msa0141790:intron | 45.0% |
| ! | GCTATTTGAGACGTGGATTG+GGG | + | chr1_4:531751-531770 | Msa0141790:intron | 45.0% |
| AGCTCAAAACCGACCACTTT+GGG | - | chr1_4:531786-531805 | None:intergenic | 45.0% | |
| TAGCAGCTTTCTCAAGCTGA+AGG | - | chr1_4:531867-531886 | None:intergenic | 45.0% | |
| ! | GCTCCATTGTCTGCTTCTTT+TGG | + | chr1_4:531933-531952 | Msa0141790:three_prime_UTR | 45.0% |
| CTGCCAAAAGAAGCAGACAA+TGG | - | chr1_4:531939-531958 | None:intergenic | 45.0% | |
| ! | TTCCTTCCATTCTGGAGGGA+CGG | + | chr1_4:529202-529221 | Msa0141790:intron | 50.0% |
| GACGGAGTTCTTGTCTGTGT+AGG | + | chr1_4:529220-529239 | Msa0141790:intron | 50.0% | |
| TTGAGTGCCAAGAGAGCAGA+TGG | + | chr1_4:529517-529536 | Msa0141790:intron | 50.0% | |
| TTCATGGTAGCTGGGGATAG+AGG | + | chr1_4:529638-529657 | Msa0141790:intron | 50.0% | |
| CACTGACACGAGATCCCTTT+GGG | - | chr1_4:530031-530050 | None:intergenic | 50.0% | |
| TCACTGACACGAGATCCCTT+TGG | - | chr1_4:530032-530051 | None:intergenic | 50.0% | |
| !! | TGTCGGTGTCACTTCTCTTG+TGG | + | chr1_4:530522-530541 | Msa0141790:intron | 50.0% |
| ! | TGCATAGGTTGGCTCCTCTT+TGG | + | chr1_4:530572-530591 | Msa0141790:CDS | 50.0% |
| ! | GCATAGGTTGGCTCCTCTTT+GGG | + | chr1_4:530573-530592 | Msa0141790:CDS | 50.0% |
| ! | GTACATTTTGCAGGGCCTAG+AGG | + | chr1_4:530627-530646 | Msa0141790:CDS | 50.0% |
| !! | GTTTTGAGCATATCCCTCGC+TGG | + | chr1_4:530921-530940 | Msa0141790:CDS | 50.0% |
| GTATGTCCCACCACATTGTG+TGG | + | chr1_4:531189-531208 | Msa0141790:intron | 50.0% | |
| !! | GTGTTGTCAATAGCGGATCG+CGG | - | chr1_4:531531-531550 | None:intergenic | 50.0% |
| CGATCCGCTATTGACAACAC+TGG | + | chr1_4:531531-531550 | Msa0141790:intron | 50.0% | |
| CAACAGACTCGGAGAAAGAG+AGG | - | chr1_4:531582-531601 | None:intergenic | 50.0% | |
| !! | ATTTGAGACGTGGATTGGGG+TGG | + | chr1_4:531754-531773 | Msa0141790:CDS | 50.0% |
| TGGCATCTTCCCAAAGTGGT+CGG | + | chr1_4:531774-531793 | Msa0141790:CDS | 50.0% | |
| GAGCTCAAAACCGACCACTT+TGG | - | chr1_4:531787-531806 | None:intergenic | 50.0% | |
| GCTCTTCACATCCTTGGTGA+TGG | + | chr1_4:531803-531822 | Msa0141790:CDS | 50.0% | |
| ! | AGGTGTGGCGGAGTAGTAGA+CGG | - | chr1_4:528749-528768 | None:intergenic | 55.0% |
| AGAACTCCGTCCCTCCAGAA+TGG | - | chr1_4:529211-529230 | None:intergenic | 55.0% | |
| TAGCTGGGGATAGAGGAGTG+AGG | + | chr1_4:529645-529664 | Msa0141790:intron | 55.0% | |
| TGGGGATAGAGGAGTGAGGA+AGG | + | chr1_4:529649-529668 | Msa0141790:intron | 55.0% | |
| ! | GAGTTTGGGATTTGGGCCAC+AGG | + | chr1_4:529742-529761 | Msa0141790:intron | 55.0% |
| TTGGGATTTGGGCCACAGGA+TGG | + | chr1_4:529746-529765 | Msa0141790:intron | 55.0% | |
| TGGGATTTGGGCCACAGGAT+GGG | + | chr1_4:529747-529766 | Msa0141790:intron | 55.0% | |
| GAAACACCAGAGGCCGATCA+AGG | - | chr1_4:530472-530491 | None:intergenic | 55.0% | |
| !! | GGTGTCACTTCTCTTGTGGC+AGG | + | chr1_4:530526-530545 | Msa0141790:intron | 55.0% |
| TCACTTCTCTTGTGGCAGGC+TGG | + | chr1_4:530530-530549 | Msa0141790:intron | 55.0% | |
| CACTTCTCTTGTGGCAGGCT+GGG | + | chr1_4:530531-530550 | Msa0141790:intron | 55.0% | |
| ! | TAGGTTGGCTCCTCTTTGGG+TGG | + | chr1_4:530576-530595 | Msa0141790:CDS | 55.0% |
| ! | AGGTTGGCTCCTCTTTGGGT+GGG | + | chr1_4:530577-530596 | Msa0141790:CDS | 55.0% |
| AGCATATCCCTCGCTGGACT+GGG | + | chr1_4:530927-530946 | Msa0141790:CDS | 55.0% | |
| ATCAGATCCCAGTCCAGCGA+GGG | - | chr1_4:530937-530956 | None:intergenic | 55.0% | |
| AATCAGATCCCAGTCCAGCG+AGG | - | chr1_4:530938-530957 | None:intergenic | 55.0% | |
| ! | TCGCTGGACTGGGATCTGAT+TGG | + | chr1_4:530937-530956 | Msa0141790:CDS | 55.0% |
| ! | CTGGACTGGGATCTGATTGG+TGG | + | chr1_4:530940-530959 | Msa0141790:CDS | 55.0% |
| CGGAGTAGTAGACGGCGTGA+GGG | - | chr1_4:528741-528760 | None:intergenic | 60.0% | |
| CTCCGTCCCTCCAGAATGGA+AGG | - | chr1_4:529207-529226 | None:intergenic | 60.0% | |
| GGGATTTGGGCCACAGGATG+GGG | + | chr1_4:529748-529767 | Msa0141790:intron | 60.0% | |
| GGATTTGGGCCACAGGATGG+GGG | + | chr1_4:529749-529768 | Msa0141790:intron | 60.0% | |
| GGTCTACTTCCCCCATCCTG+TGG | - | chr1_4:529761-529780 | None:intergenic | 60.0% | |
| CTCCTTCCTTGATCGGCCTC+TGG | + | chr1_4:530463-530482 | Msa0141790:intron | 60.0% | |
| CACCAGAGGCCGATCAAGGA+AGG | - | chr1_4:530468-530487 | None:intergenic | 60.0% | |
| CCTCTAGCACCCACCCAAAG+AGG | - | chr1_4:530589-530608 | None:intergenic | 60.0% | |
| CCTCTTTGGGTGGGTGCTAG+AGG | + | chr1_4:530586-530605 | Msa0141790:CDS | 60.0% | |
| GAGCATATCCCTCGCTGGAC+TGG | + | chr1_4:530926-530945 | Msa0141790:CDS | 60.0% | |
| GGGGTGGCATCTTCCCAAAG+TGG | + | chr1_4:531770-531789 | Msa0141790:CDS | 60.0% | |
| GCGGAGTAGTAGACGGCGTG+AGG | - | chr1_4:528742-528761 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 528546 | 532410 | 528546 | ID=Msa0141790;Name=Msa0141790 |
| chr1_4 | mRNA | 528546 | 532410 | 528546 | ID=Msa0141790-mRNA-1;Parent=Msa0141790;Name=Msa0141790-mRNA-1;_AED=0.02;_eAED=0.02;_QI=148|1|1|1|1|1|7|535|228 |
| chr1_4 | exon | 528546 | 528770 | 528546 | ID=Msa0141790-mRNA-1:exon:60;Parent=Msa0141790-mRNA-1 |
| chr1_4 | exon | 528880 | 528949 | 528880 | ID=Msa0141790-mRNA-1:exon:61;Parent=Msa0141790-mRNA-1 |
| chr1_4 | exon | 529056 | 529115 | 529056 | ID=Msa0141790-mRNA-1:exon:62;Parent=Msa0141790-mRNA-1 |
| chr1_4 | exon | 530267 | 530381 | 530267 | ID=Msa0141790-mRNA-1:exon:63;Parent=Msa0141790-mRNA-1 |
| chr1_4 | exon | 530548 | 530663 | 530548 | ID=Msa0141790-mRNA-1:exon:64;Parent=Msa0141790-mRNA-1 |
| chr1_4 | exon | 530921 | 531045 | 530921 | ID=Msa0141790-mRNA-1:exon:65;Parent=Msa0141790-mRNA-1 |
| chr1_4 | exon | 531752 | 532410 | 531752 | ID=Msa0141790-mRNA-1:exon:66;Parent=Msa0141790-mRNA-1 |
| chr1_4 | five_prime_UTR | 528546 | 528693 | 528546 | ID=Msa0141790-mRNA-1:five_prime_utr;Parent=Msa0141790-mRNA-1 |
| chr1_4 | CDS | 528694 | 528770 | 528694 | ID=Msa0141790-mRNA-1:cds;Parent=Msa0141790-mRNA-1 |
| chr1_4 | CDS | 528880 | 528949 | 528880 | ID=Msa0141790-mRNA-1:cds;Parent=Msa0141790-mRNA-1 |
| chr1_4 | CDS | 529056 | 529115 | 529056 | ID=Msa0141790-mRNA-1:cds;Parent=Msa0141790-mRNA-1 |
| chr1_4 | CDS | 530267 | 530381 | 530267 | ID=Msa0141790-mRNA-1:cds;Parent=Msa0141790-mRNA-1 |
| chr1_4 | CDS | 530548 | 530663 | 530548 | ID=Msa0141790-mRNA-1:cds;Parent=Msa0141790-mRNA-1 |
| chr1_4 | CDS | 530921 | 531045 | 530921 | ID=Msa0141790-mRNA-1:cds;Parent=Msa0141790-mRNA-1 |
| chr1_4 | CDS | 531752 | 531875 | 531752 | ID=Msa0141790-mRNA-1:cds;Parent=Msa0141790-mRNA-1 |
| chr1_4 | three_prime_UTR | 531876 | 532410 | 531876 | ID=Msa0141790-mRNA-1:three_prime_utr;Parent=Msa0141790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
