Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623450 | XP_003602965.1 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 8.54e-166 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623450 | sp|Q6DFI2|TM147_XENLA | 37.278 | 169 | 98 | 4 | 1 | 166 | 1 | 164 | 1.36e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623450 | G7J5Q0 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 4.08e-166 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623450 | Msa1269530 | 0.983830 | 7.949036e-159 | -8.615850e-47 |
| Msa0141790 | Msa0623450 | 0.809531 | 1.807088e-50 | -8.615850e-47 |
| Msa0380130 | Msa0623450 | 0.992064 | 4.244575e-191 | -8.615850e-47 |
| Msa0429470 | Msa0623450 | 0.994742 | 8.295881e-210 | -8.615850e-47 |
| Msa0429580 | Msa0623450 | 0.935434 | 8.534645e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623450 | MtrunA17_Chr3g0133291 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 7.85e-170 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623450 | AT1G47640.1 | 87.225 | 227 | 29 | 0 | 1 | 227 | 1 | 227 | 1.82e-149 | 415 |
Find 70 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTCCATTCCATATCTT+TGG | 0.207710 | 4_3:-730228 | Msa0623450:three_prime_UTR |
| TGCATAGGTTGGCTCCTCTT+TGG | 0.231286 | 4_3:-731765 | Msa0623450:CDS |
| CCTAGAGGCTAATGCAAATT+TGG | 0.264750 | 4_3:-731695 | Msa0623450:intron |
| TAATAAAATCCAGGGTGTTT+TGG | 0.297926 | 4_3:-730023 | Msa0623450:three_prime_UTR |
| AACATCAATAAAACCTATTA+AGG | 0.298184 | 4_3:+732057 | None:intergenic |
| GCTCCATTGTCTGCTTCTTT+TGG | 0.299649 | 4_3:-730405 | Msa0623450:three_prime_UTR |
| GCATAGGTTGGCTCCTCTTT+GGG | 0.301668 | 4_3:-731764 | Msa0623450:CDS |
| CCAGCACACAAGTATATAAT+AGG | 0.316254 | 4_3:+731345 | None:intergenic |
| AGCTCAAAACCGACCACTTT+GGG | 0.322717 | 4_3:+730555 | None:intergenic |
| TCTCTGCCAGCTTATTTGTT+TGG | 0.326986 | 4_3:-733293 | Msa0623450:intron |
| GAGCATATCCCTCGCTGGAC+TGG | 0.334400 | 4_3:-731412 | Msa0623450:CDS |
| TACATGTTACACACCTGATA+TGG | 0.335870 | 4_3:+733232 | None:intergenic |
| AACTGTGCGATTCTCACTTT+CGG | 0.343965 | 4_3:-733624 | Msa0623450:CDS |
| GGGTCTTGGGTTTATTCTTT+CGG | 0.344658 | 4_3:+731373 | None:intergenic |
| AGATATTTCTGTGAGTCAAC+TGG | 0.359727 | 4_3:+732011 | None:intergenic |
| AGCTATTTGAGACGTGGATT+GGG | 0.361113 | 4_3:-730588 | Msa0623450:CDS |
| CTAGAGGATTAGAATTTACT+TGG | 0.367682 | 4_3:-731735 | Msa0623450:CDS |
| CAGCTATTTGAGACGTGGAT+TGG | 0.383715 | 4_3:-730589 | Msa0623450:CDS |
| CCAAATTTGCATTAGCCTCT+AGG | 0.391836 | 4_3:+731695 | None:intergenic |
| GCTAAGATAAACCAAAGATA+TGG | 0.400423 | 4_3:+730217 | None:intergenic |
| AGTAAAGACCTTGTGATAGA+TGG | 0.402554 | 4_3:+731306 | None:intergenic |
| CCTATTATATACTTGTGTGC+TGG | 0.408006 | 4_3:-731345 | Msa0623450:CDS |
| CTATTATATACTTGTGTGCT+GGG | 0.411762 | 4_3:-731344 | Msa0623450:CDS |
| AGCATATCCCTCGCTGGACT+GGG | 0.422684 | 4_3:-731411 | Msa0623450:CDS |
| TGATAGCTTTGATCCATATC+AGG | 0.429031 | 4_3:-733245 | Msa0623450:intron |
| TATAATAGGAATGAGGGTCT+TGG | 0.441236 | 4_3:+731359 | None:intergenic |
| ATAATAGGAATGAGGGTCTT+GGG | 0.442787 | 4_3:+731360 | None:intergenic |
| AATCACAAGTTTCAAGCAGT+TGG | 0.445704 | 4_3:-731983 | Msa0623450:CDS |
| CCTCTTTGGGTGGGTGCTAG+AGG | 0.451531 | 4_3:-731751 | Msa0623450:CDS |
| AACAACTAATAATAAAATCC+AGG | 0.456732 | 4_3:-730032 | Msa0623450:three_prime_UTR |
| GAGCTCAAAACCGACCACTT+TGG | 0.467128 | 4_3:+730554 | None:intergenic |
| GCTCTTCACATCCTTGGTGA+TGG | 0.469782 | 4_3:-730535 | Msa0623450:CDS |
| AAAGAGAAAGAGAAAGAGAA+AGG | 0.486114 | 4_3:-733722 | Msa0623450:five_prime_UTR |
| AGGTTGGCTCCTCTTTGGGT+GGG | 0.487173 | 4_3:-731760 | Msa0623450:CDS |
| AAGTTTCAAGCAGTTGGACT+TGG | 0.494155 | 4_3:-731977 | Msa0623450:intron |
| TCTGTGAGTCAACTGGGTTA+AGG | 0.496836 | 4_3:+732018 | None:intergenic |
| AGAGAAAGAGAAAGGTGAAG+TGG | 0.502932 | 4_3:-733714 | Msa0623450:five_prime_UTR |
| ACTGGGTTAAGGCAAAATAA+AGG | 0.503580 | 4_3:+732029 | None:intergenic |
| TAGGTTGGCTCCTCTTTGGG+TGG | 0.506863 | 4_3:-731761 | Msa0623450:CDS |
| TACTCAGAAAATAGTTATGT+AGG | 0.518456 | 4_3:+730435 | None:intergenic |
| GATAAACCAAAGATATGGAA+TGG | 0.524667 | 4_3:+730222 | None:intergenic |
| TCTCGCTACAGCATTAGTAA+AGG | 0.526454 | 4_3:-733411 | Msa0623450:intron |
| ACAAGTATATAATAGGAATG+AGG | 0.541413 | 4_3:+731352 | None:intergenic |
| TTCTGCAGCTATTTGAGACG+TGG | 0.544622 | 4_3:-730594 | Msa0623450:intron |
| TGATTCTGTACTGCATAGGT+TGG | 0.545086 | 4_3:-731776 | Msa0623450:CDS |
| GATATTTCTGTGAGTCAACT+GGG | 0.551092 | 4_3:+732012 | None:intergenic |
| GCGGAGTAGTAGACGGCGTG+AGG | 0.553841 | 4_3:+733600 | None:intergenic |
| CTGCCAAAAGAAGCAGACAA+TGG | 0.556661 | 4_3:+730402 | None:intergenic |
| CAAGTATATAATAGGAATGA+GGG | 0.557618 | 4_3:+731353 | None:intergenic |
| TTGCTGATTCTGTACTGCAT+AGG | 0.570050 | 4_3:-731780 | Msa0623450:CDS |
| TGGCATCTTCCCAAAGTGGT+CGG | 0.572570 | 4_3:-730564 | Msa0623450:CDS |
| CCTCTAGCACCCACCCAAAG+AGG | 0.575616 | 4_3:+731751 | None:intergenic |
| ACAACTAATAATAAAATCCA+GGG | 0.580652 | 4_3:-730031 | Msa0623450:three_prime_UTR |
| TAGAGGATTAGAATTTACTT+GGG | 0.589952 | 4_3:-731734 | Msa0623450:CDS |
| AGACCTTGTGATAGATGGCA+TGG | 0.593404 | 4_3:+731311 | None:intergenic |
| TAGCAGCTTTCTCAAGCTGA+AGG | 0.600485 | 4_3:+730474 | None:intergenic |
| ATTTGAGACGTGGATTGGGG+TGG | 0.610413 | 4_3:-730584 | Msa0623450:CDS |
| CAAAGATCCCAGTCCAGCGA+GGG | 0.611270 | 4_3:+731404 | None:intergenic |
| GCTATTTGAGACGTGGATTG+GGG | 0.613941 | 4_3:-730587 | Msa0623450:CDS |
| CTGGACTGGGATCTTTGATG+TGG | 0.618650 | 4_3:-731398 | Msa0623450:CDS |
| AGGTGTGGCGGAGTAGTAGA+CGG | 0.628616 | 4_3:+733593 | None:intergenic |
| CTACCATGCCATCTATCACA+AGG | 0.634671 | 4_3:-731314 | Msa0623450:intron |
| AAAAGATCAGAATCAGATGA+CGG | 0.640988 | 4_3:-733661 | Msa0623450:exon |
| CGGAGTAGTAGACGGCGTGA+GGG | 0.654035 | 4_3:+733601 | None:intergenic |
| AGATCTGAGTATGATACACT+CGG | 0.676121 | 4_3:-733461 | Msa0623450:CDS |
| GGGGTGGCATCTTCCCAAAG+TGG | 0.678666 | 4_3:-730568 | Msa0623450:CDS |
| AAGTACTTACAAAGGTGTGG+CGG | 0.688668 | 4_3:+733581 | None:intergenic |
| ACTTATAAAAGCCATCACCA+AGG | 0.688750 | 4_3:+730524 | None:intergenic |
| TCAAAGATCCCAGTCCAGCG+AGG | 0.696797 | 4_3:+731403 | None:intergenic |
| TGTAGCGAGATAAACAACTG+CGG | 0.776602 | 4_3:+733424 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTATCATAATAAAT+AGG | + | chr4_3:731366-731385 | None:intergenic | 10.0% |
| !!! | GTTTTTCCTAAATTATAATA+AGG | - | chr4_3:730565-730584 | Msa0623450:CDS | 15.0% |
| !!! | AACTAATTTAAAGGTATTTT+GGG | + | chr4_3:730763-730782 | None:intergenic | 15.0% |
| !!! | AAACTAATTTAAAGGTATTT+TGG | + | chr4_3:730764-730783 | None:intergenic | 15.0% |
| !! | TGAGATAATTACTATAATTA+CGG | - | chr4_3:730797-730816 | Msa0623450:intron | 15.0% |
| !! | TTTATCATAATAAATAGGAA+TGG | + | chr4_3:731361-731380 | None:intergenic | 15.0% |
| !! | CTATAAGAATATATGAAAAT+TGG | + | chr4_3:731594-731613 | None:intergenic | 15.0% |
| !! | ACAACAAACATAATAAAATA+TGG | + | chr4_3:731621-731640 | None:intergenic | 15.0% |
| !!! | TTTTATAATCCAACATTAAT+TGG | - | chr4_3:732174-732193 | Msa0623450:intron | 15.0% |
| !! | TACCACAAAAAAAAATTAAT+AGG | + | chr4_3:733450-733469 | None:intergenic | 15.0% |
| !! | TATTAGTTAGAGAGTTAATT+AGG | + | chr4_3:730404-730423 | None:intergenic | 20.0% |
| !! | ACTACACCTTATTATAATTT+AGG | + | chr4_3:730574-730593 | None:intergenic | 20.0% |
| !! | CCATTAAGAAACTAATTTAA+AGG | + | chr4_3:730772-730791 | None:intergenic | 20.0% |
| !!! | CCTTTAAATTAGTTTCTTAA+TGG | - | chr4_3:730769-730788 | Msa0623450:intron | 20.0% |
| !! | GAGATAATTACTATAATTAC+GGG | - | chr4_3:730798-730817 | Msa0623450:intron | 20.0% |
| !! | AAATTATCTCCTAATTACAT+TGG | + | chr4_3:730963-730982 | None:intergenic | 20.0% |
| !! | TAAATAAACAAAAGATAGCA+CGG | + | chr4_3:731215-731234 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGTTTGTTGTC+TGG | - | chr4_3:731622-731641 | Msa0623450:intron | 20.0% |
| !! | AACATCAATAAAACCTATTA+AGG | + | chr4_3:731689-731708 | None:intergenic | 20.0% |
| !!! | TTTTAAATTTATGTGCATCT+TGG | - | chr4_3:731829-731848 | Msa0623450:intron | 20.0% |
| !! | TGTAAAAAATTCAAAACTCT+AGG | + | chr4_3:732112-732131 | None:intergenic | 20.0% |
| !!! | TTTTTACAATCCACATTAAT+TGG | - | chr4_3:732124-732143 | Msa0623450:intron | 20.0% |
| !!! | AATGATTTAAAACAAGAAGA+GGG | - | chr4_3:732643-732662 | Msa0623450:intron | 20.0% |
| !!! | TGAATTTTAAATAAACTGCA+TGG | + | chr4_3:733370-733389 | None:intergenic | 20.0% |
| !!! | TACTTTTGTTTCAAAACAAT+TGG | - | chr4_3:733553-733572 | Msa0623450:intron | 20.0% |
| !!! | TTGTTTTCTAATTGTATCTT+TGG | - | chr4_3:733605-733624 | Msa0623450:CDS | 20.0% |
| !! | AACAACTAATAATAAAATCC+AGG | - | chr4_3:733711-733730 | Msa0623450:five_prime_UTR | 20.0% |
| !! | ACAACTAATAATAAAATCCA+GGG | - | chr4_3:733712-733731 | Msa0623450:five_prime_UTR | 20.0% |
| !!! | TTTTGTAGTATATTTACTCA+AGG | - | chr4_3:733777-733796 | Msa0623450:five_prime_UTR | 20.0% |
| !!! | GAATGAAAAAGTACTTACAA+AGG | + | chr4_3:730173-730192 | None:intergenic | 25.0% |
| ! | TTAGGTTTGAAGATGTAAAA+AGG | + | chr4_3:730386-730405 | None:intergenic | 25.0% |
| ! | TTCTTAAGTGTGATAAATGA+TGG | - | chr4_3:730981-731000 | Msa0623450:intron | 25.0% |
| !! | GATTTTCTTATAACTGTTCA+TGG | - | chr4_3:731026-731045 | Msa0623450:intron | 25.0% |
| ! | TTAAATCATTATCTCTAGCA+GGG | + | chr4_3:731087-731106 | None:intergenic | 25.0% |
| ! | TTTAAATCATTATCTCTAGC+AGG | + | chr4_3:731088-731107 | None:intergenic | 25.0% |
| !! | TAGAGATAATGATTTAAAGC+AGG | - | chr4_3:731090-731109 | Msa0623450:intron | 25.0% |
| !! | AGAGATAATGATTTAAAGCA+GGG | - | chr4_3:731091-731110 | Msa0623450:intron | 25.0% |
| ! | AAATAAACAAAAGATAGCAC+GGG | + | chr4_3:731214-731233 | None:intergenic | 25.0% |
| !!! | CGTTTGGTATATTTTGTTTA+TGG | - | chr4_3:731280-731299 | Msa0623450:intron | 25.0% |
| ! | ACTTAAATTTCAGCATAAGT+AGG | - | chr4_3:731382-731401 | Msa0623450:CDS | 25.0% |
| !!! | CTGTTTTTGAGAAATTACAA+TGG | - | chr4_3:731548-731567 | Msa0623450:intron | 25.0% |
| !! | TTGTCTGGAATAATAACAAA+TGG | - | chr4_3:731637-731656 | Msa0623450:intron | 25.0% |
| !!! | TGTTTTTCAGGAATTTTTGA+AGG | - | chr4_3:731663-731682 | Msa0623450:intron | 25.0% |
| ! | TAGAGGATTAGAATTTACTT+GGG | - | chr4_3:732009-732028 | Msa0623450:CDS | 25.0% |
| ! | TGCATTATTCCAATTAATGT+TGG | + | chr4_3:732186-732205 | None:intergenic | 25.0% |
| ! | CAAGTATATAATAGGAATGA+GGG | + | chr4_3:732393-732412 | None:intergenic | 25.0% |
| ! | ACAAGTATATAATAGGAATG+AGG | + | chr4_3:732394-732413 | None:intergenic | 25.0% |
| !!! | ACTGATGTCATTTTAATTTG+AGG | - | chr4_3:732505-732524 | Msa0623450:intron | 25.0% |
| !!! | TTCTTGTTTTAAATCATTGC+AGG | + | chr4_3:732641-732660 | None:intergenic | 25.0% |
| !! | CAATGATTTAAAACAAGAAG+AGG | - | chr4_3:732642-732661 | Msa0623450:intron | 25.0% |
| ! | TTGTACTAAATAACATATCG+TGG | + | chr4_3:732843-732862 | None:intergenic | 25.0% |
| ! | TACTCAGAAAATAGTTATGT+AGG | + | chr4_3:733311-733330 | None:intergenic | 25.0% |
| !!! | CGCCTATTAATTTTTTTTTG+TGG | - | chr4_3:733445-733464 | Msa0623450:CDS | 25.0% |
| !!! | TTTTTTTTGTGGTAGAATGT+TGG | - | chr4_3:733456-733475 | Msa0623450:CDS | 25.0% |
| AAAGAGAAAGAGAAAGAGAA+AGG | - | chr4_3:730021-730040 | Msa0623450:three_prime_UTR | 30.0% | |
| AAAAGATCAGAATCAGATGA+CGG | - | chr4_3:730082-730101 | Msa0623450:three_prime_UTR | 30.0% | |
| !! | AAAAAGTACTTACAAAGGTG+TGG | + | chr4_3:730168-730187 | None:intergenic | 30.0% |
| ! | AGTTTTCATGATGCGAAATT+GGG | + | chr4_3:730232-730251 | None:intergenic | 30.0% |
| ! | TAGTTTTCATGATGCGAAAT+TGG | + | chr4_3:730233-730252 | None:intergenic | 30.0% |
| TCCTTAATAAGTGTGAAAGT+AGG | - | chr4_3:730883-730902 | Msa0623450:intron | 30.0% | |
| ACCTACTTTCACACTTATTA+AGG | + | chr4_3:730887-730906 | None:intergenic | 30.0% | |
| TATCTCCTAATTACATTGGA+GGG | + | chr4_3:730959-730978 | None:intergenic | 30.0% | |
| TTATCTCCTAATTACATTGG+AGG | + | chr4_3:730960-730979 | None:intergenic | 30.0% | |
| TGGATACAAGAGAATATTTG+TGG | - | chr4_3:731001-731020 | Msa0623450:intron | 30.0% | |
| ATACAAGAGAATATTTGTGG+AGG | - | chr4_3:731004-731023 | Msa0623450:intron | 30.0% | |
| ! | TAATGATTTAAAGCAGGGAT+AGG | - | chr4_3:731096-731115 | Msa0623450:intron | 30.0% |
| ! | AATGATTTAAAGCAGGGATA+GGG | - | chr4_3:731097-731116 | Msa0623450:intron | 30.0% |
| !!! | TAGCCAATCATTTTGAGTTT+GGG | - | chr4_3:731132-731151 | Msa0623450:intron | 30.0% |
| AATCCCAAACTCAAAATGAT+TGG | + | chr4_3:731138-731157 | None:intergenic | 30.0% | |
| !!! | ATCATTTTGAGTTTGGGATT+TGG | - | chr4_3:731138-731157 | Msa0623450:intron | 30.0% |
| !!! | TCATTTTGAGTTTGGGATTT+GGG | - | chr4_3:731139-731158 | Msa0623450:intron | 30.0% |
| CAAAATATACCAAACGCTTA+AGG | + | chr4_3:731276-731295 | None:intergenic | 30.0% | |
| CATAATAAATAGGAATGGCA+AGG | + | chr4_3:731356-731375 | None:intergenic | 30.0% | |
| TAAATTTCAGCATAAGTAGG+CGG | - | chr4_3:731385-731404 | Msa0623450:CDS | 30.0% | |
| !!! | AACAAATGGCTTTGTTTTTC+AGG | - | chr4_3:731651-731670 | Msa0623450:intron | 30.0% |
| !! | GAATTTTTGAAGGCCTTAAT+AGG | - | chr4_3:731673-731692 | Msa0623450:intron | 30.0% |
| !!! | ATAGGTTTTATTGATGTTGC+TGG | - | chr4_3:731691-731710 | Msa0623450:intron | 30.0% |
| CTAGAGGATTAGAATTTACT+TGG | - | chr4_3:732008-732027 | Msa0623450:CDS | 30.0% | |
| ! | CTGTGTTATTCCAATTAATG+TGG | + | chr4_3:732137-732156 | None:intergenic | 30.0% |
| AGTTTGTCAATGTTGTTATG+TGG | - | chr4_3:732208-732227 | Msa0623450:intron | 30.0% | |
| TCAATGTTGTTATGTGGTAT+AGG | - | chr4_3:732214-732233 | Msa0623450:intron | 30.0% | |
| CTATTATATACTTGTGTGCT+GGG | - | chr4_3:732399-732418 | Msa0623450:intron | 30.0% | |
| CTATATAACAACACTCATTG+AGG | + | chr4_3:732772-732791 | None:intergenic | 30.0% | |
| GTGTTTCAAATAGATTACAG+TGG | - | chr4_3:732864-732883 | Msa0623450:intron | 30.0% | |
| ! | TGATAAAAGACCTGTCTTTT+TGG | - | chr4_3:733025-733044 | Msa0623450:intron | 30.0% |
| ! | AATCACTGGTCTATTAGATA+TGG | - | chr4_3:733052-733071 | Msa0623450:intron | 30.0% |
| GATAAACCAAAGATATGGAA+TGG | + | chr4_3:733524-733543 | None:intergenic | 30.0% | |
| GCTAAGATAAACCAAAGATA+TGG | + | chr4_3:733529-733548 | None:intergenic | 30.0% | |
| !!! | TTAAGATGACTGTTTTAACG+AGG | - | chr4_3:733634-733653 | Msa0623450:CDS | 30.0% |
| !! | TAATAAAATCCAGGGTGTTT+TGG | - | chr4_3:733720-733739 | Msa0623450:five_prime_UTR | 30.0% |
| ! | TTTTCATGATGCGAAATTGG+GGG | + | chr4_3:730230-730249 | None:intergenic | 35.0% |
| ! | GTTTTCATGATGCGAAATTG+GGG | + | chr4_3:730231-730250 | None:intergenic | 35.0% |
| AGATCTGAGTATGATACACT+CGG | - | chr4_3:730282-730301 | Msa0623450:three_prime_UTR | 35.0% | |
| AAGTAGCCAAACAAATAAGC+TGG | + | chr4_3:730459-730478 | None:intergenic | 35.0% | |
| !!! | TTGTTTGGCTACTTTTCTCA+AGG | - | chr4_3:730465-730484 | Msa0623450:three_prime_UTR | 35.0% |
| !! | TGATAGCTTTGATCCATATC+AGG | - | chr4_3:730498-730517 | Msa0623450:CDS | 35.0% |
| TACATGTTACACACCTGATA+TGG | + | chr4_3:730514-730533 | None:intergenic | 35.0% | |
| AGATACCCTCCAATGTAATT+AGG | - | chr4_3:730951-730970 | Msa0623450:intron | 35.0% | |
| TTATAACTGTTCATGGTAGC+TGG | - | chr4_3:731033-731052 | Msa0623450:intron | 35.0% | |
| TATAACTGTTCATGGTAGCT+GGG | - | chr4_3:731034-731053 | Msa0623450:intron | 35.0% | |
| !!! | GTAGCCAATCATTTTGAGTT+TGG | - | chr4_3:731131-731150 | Msa0623450:intron | 35.0% |
| AGATACTGCAGAATCTTGAA+GGG | + | chr4_3:731188-731207 | None:intergenic | 35.0% | |
| ! | CATCTAAAACCTTAAGCGTT+TGG | - | chr4_3:731264-731283 | Msa0623450:intron | 35.0% |
| TATCAATGCATAAAGCCCAA+AGG | - | chr4_3:731418-731437 | Msa0623450:CDS | 35.0% | |
| ATCAATGCATAAAGCCCAAA+GGG | - | chr4_3:731419-731438 | Msa0623450:CDS | 35.0% | |
| ! | GCCTAAAAGCTTAAGCTTTT+GGG | - | chr4_3:731489-731508 | Msa0623450:intron | 35.0% |
| ! | TCCCAAAAGCTTAAGCTTTT+AGG | + | chr4_3:731493-731512 | None:intergenic | 35.0% |
| ACTGGGTTAAGGCAAAATAA+AGG | + | chr4_3:731717-731736 | None:intergenic | 35.0% | |
| ! | GATATTTCTGTGAGTCAACT+GGG | + | chr4_3:731734-731753 | None:intergenic | 35.0% |
| ! | AGATATTTCTGTGAGTCAAC+TGG | + | chr4_3:731735-731754 | None:intergenic | 35.0% |
| AATCACAAGTTTCAAGCAGT+TGG | - | chr4_3:731760-731779 | Msa0623450:CDS | 35.0% | |
| AATAGCAAAAGAAACACCAG+AGG | + | chr4_3:731888-731907 | None:intergenic | 35.0% | |
| CTTCTCTAACTTTCACTTGT+CGG | - | chr4_3:731911-731930 | Msa0623450:intron | 35.0% | |
| TTTCTGCACTTTATCTGTAC+AGG | - | chr4_3:732304-732323 | Msa0623450:intron | 35.0% | |
| ATAATAGGAATGAGGGTCTT+GGG | + | chr4_3:732386-732405 | None:intergenic | 35.0% | |
| TATAATAGGAATGAGGGTCT+TGG | + | chr4_3:732387-732406 | None:intergenic | 35.0% | |
| CCAGCACACAAGTATATAAT+AGG | + | chr4_3:732401-732420 | None:intergenic | 35.0% | |
| CCTATTATATACTTGTGTGC+TGG | - | chr4_3:732398-732417 | Msa0623450:intron | 35.0% | |
| AGTAAAGACCTTGTGATAGA+TGG | + | chr4_3:732440-732459 | None:intergenic | 35.0% | |
| ! | TCTAGCACTCACTCTTTTAT+TGG | - | chr4_3:732560-732579 | Msa0623450:intron | 35.0% |
| TGAGAAGAAAAATCCCAGTT+AGG | + | chr4_3:732710-732729 | None:intergenic | 35.0% | |
| GTGATTCTATCCAAAAAGAC+AGG | + | chr4_3:733038-733057 | None:intergenic | 35.0% | |
| ! | GTCTTTTTGGATAGAATCAC+TGG | - | chr4_3:733038-733057 | Msa0623450:intron | 35.0% |
| AAACACTACGCTACAGTAAA+TGG | + | chr4_3:733116-733135 | None:intergenic | 35.0% | |
| ACTTATAAAAGCCATCACCA+AGG | + | chr4_3:733222-733241 | None:intergenic | 35.0% | |
| !!! | TGGTGATGGCTTTTATAAGT+TGG | - | chr4_3:733222-733241 | Msa0623450:intron | 35.0% |
| TTCTCTCCATTCCATATCTT+TGG | - | chr4_3:733515-733534 | Msa0623450:intron | 35.0% | |
| AGAGAAAGAGAAAGGTGAAG+TGG | - | chr4_3:730029-730048 | Msa0623450:three_prime_UTR | 40.0% | |
| AACTGTGCGATTCTCACTTT+CGG | - | chr4_3:730119-730138 | Msa0623450:three_prime_UTR | 40.0% | |
| ! | AAGTACTTACAAAGGTGTGG+CGG | + | chr4_3:730165-730184 | None:intergenic | 40.0% |
| TGTAGCGAGATAAACAACTG+CGG | + | chr4_3:730322-730341 | None:intergenic | 40.0% | |
| TCTCGCTACAGCATTAGTAA+AGG | - | chr4_3:730332-730351 | Msa0623450:three_prime_UTR | 40.0% | |
| ACAAATAAGCTGGCAGAGAA+AGG | + | chr4_3:730449-730468 | None:intergenic | 40.0% | |
| TCTCTGCCAGCTTATTTGTT+TGG | - | chr4_3:730450-730469 | Msa0623450:three_prime_UTR | 40.0% | |
| ! | AGCTCTAATTCCTTCCATTC+TGG | - | chr4_3:730598-730617 | Msa0623450:intron | 40.0% |
| TCTAATTCCTTCCATTCTGG+AGG | - | chr4_3:730601-730620 | Msa0623450:intron | 40.0% | |
| CTAATTCCTTCCATTCTGGA+GGG | - | chr4_3:730602-730621 | Msa0623450:intron | 40.0% | |
| CACAAGAGTGAAGCATGAAA+TGG | + | chr4_3:730665-730684 | None:intergenic | 40.0% | |
| ATAACTGTTCATGGTAGCTG+GGG | - | chr4_3:731035-731054 | Msa0623450:intron | 40.0% | |
| GATACTGCAGAATCTTGAAG+GGG | + | chr4_3:731187-731206 | None:intergenic | 40.0% | |
| GAGATACTGCAGAATCTTGA+AGG | + | chr4_3:731189-731208 | None:intergenic | 40.0% | |
| ! | CGCCTAAAAGCTTAAGCTTT+TGG | - | chr4_3:731488-731507 | Msa0623450:intron | 40.0% |
| !!! | GCTTAAGCTTTTGGGATAGA+TGG | - | chr4_3:731497-731516 | Msa0623450:intron | 40.0% |
| !!! | CTTTTGGGATAGATGGTTCA+TGG | - | chr4_3:731504-731523 | Msa0623450:intron | 40.0% |
| AAGTTTCAAGCAGTTGGACT+TGG | - | chr4_3:731766-731785 | Msa0623450:CDS | 40.0% | |
| TGATGTTCTCCTTCCTTGAT+CGG | - | chr4_3:731862-731881 | Msa0623450:intron | 40.0% | |
| !! | TTGCTGATTCTGTACTGCAT+AGG | - | chr4_3:731963-731982 | Msa0623450:intron | 40.0% |
| TGATTCTGTACTGCATAGGT+TGG | - | chr4_3:731967-731986 | Msa0623450:intron | 40.0% | |
| !! | TACTTGGGAGTACATTTTGC+AGG | - | chr4_3:732024-732043 | Msa0623450:CDS | 40.0% |
| !! | ACTTGGGAGTACATTTTGCA+GGG | - | chr4_3:732025-732044 | Msa0623450:CDS | 40.0% |
| ! | CCAAATTTGCATTAGCCTCT+AGG | + | chr4_3:732051-732070 | None:intergenic | 40.0% |
| CCTAGAGGCTAATGCAAATT+TGG | - | chr4_3:732048-732067 | Msa0623450:CDS | 40.0% | |
| !! | TTGGTACGTTCTTTAGCTCT+CGG | - | chr4_3:732067-732086 | Msa0623450:CDS | 40.0% |
| GGGTCTTGGGTTTATTCTTT+CGG | + | chr4_3:732373-732392 | None:intergenic | 40.0% | |
| ! | GCACTCACTCTTTTATTGGA+TGG | - | chr4_3:732564-732583 | Msa0623450:intron | 40.0% |
| CAAATAGAACCCACACAATG+TGG | + | chr4_3:732607-732626 | None:intergenic | 40.0% | |
| TGTTGCTAACACTACCTAAC+TGG | - | chr4_3:732693-732712 | Msa0623450:intron | 40.0% | |
| GTTGCTAACACTACCTAACT+GGG | - | chr4_3:732694-732713 | Msa0623450:intron | 40.0% | |
| GCTATAGCGCAATTGTTTAG+TGG | - | chr4_3:732794-732813 | Msa0623450:intron | 40.0% | |
| GCTATAGCATTGTAGCATAG+TGG | - | chr4_3:732888-732907 | Msa0623450:intron | 40.0% | |
| GGAGAAAGAGAGGTAAAAGT+TGG | + | chr4_3:732977-732996 | None:intergenic | 40.0% | |
| GGTCTATTAGATATGGTGCT+TGG | - | chr4_3:733059-733078 | Msa0623450:intron | 40.0% | |
| ! | AGCTATTTGAGACGTGGATT+GGG | - | chr4_3:733155-733174 | Msa0623450:intron | 40.0% |
| ! | TTTTGAGCTCTTCACATCCT+TGG | - | chr4_3:733202-733221 | Msa0623450:intron | 40.0% |
| CAAAAAACACCAAAACACCC+TGG | + | chr4_3:733732-733751 | None:intergenic | 40.0% | |
| ATCATTGCCATCTGCTCTCT+TGG | + | chr4_3:730931-730950 | None:intergenic | 45.0% | |
| TCTGTGAGTCAACTGGGTTA+AGG | + | chr4_3:731728-731747 | None:intergenic | 45.0% | |
| CTACCATGCCATCTATCACA+AGG | - | chr4_3:732429-732448 | Msa0623450:intron | 45.0% | |
| AGACCTTGTGATAGATGGCA+TGG | + | chr4_3:732435-732454 | None:intergenic | 45.0% | |
| TATGTCCCACCACATTGTGT+GGG | - | chr4_3:732595-732614 | Msa0623450:intron | 45.0% | |
| TAGAACCCACACAATGTGGT+GGG | + | chr4_3:732603-732622 | None:intergenic | 45.0% | |
| ATAGAACCCACACAATGTGG+TGG | + | chr4_3:732604-732623 | None:intergenic | 45.0% | |
| ! | CTCATTGAGGCTTTTGTGCT+TGG | + | chr4_3:732759-732778 | None:intergenic | 45.0% |
| GAAGCCAGTGTTGTCAATAG+CGG | + | chr4_3:732943-732962 | None:intergenic | 45.0% | |
| TATCTACGCAGCAACAGACT+CGG | + | chr4_3:732998-733017 | None:intergenic | 45.0% | |
| ! | TTCTGCAGCTATTTGAGACG+TGG | - | chr4_3:733149-733168 | Msa0623450:intron | 45.0% |
| ! | CAGCTATTTGAGACGTGGAT+TGG | - | chr4_3:733154-733173 | Msa0623450:intron | 45.0% |
| ! | GCTATTTGAGACGTGGATTG+GGG | - | chr4_3:733156-733175 | Msa0623450:intron | 45.0% |
| AGCTCAAAACCGACCACTTT+GGG | + | chr4_3:733191-733210 | None:intergenic | 45.0% | |
| TAGCAGCTTTCTCAAGCTGA+AGG | + | chr4_3:733272-733291 | None:intergenic | 45.0% | |
| ! | GCTCCATTGTCTGCTTCTTT+TGG | - | chr4_3:733338-733357 | Msa0623450:intron | 45.0% |
| CTGCCAAAAGAAGCAGACAA+TGG | + | chr4_3:733344-733363 | None:intergenic | 45.0% | |
| ! | TTCCTTCCATTCTGGAGGGA+CGG | - | chr4_3:730606-730625 | Msa0623450:intron | 50.0% |
| GACGGAGTTCTTGTCTGTGT+AGG | - | chr4_3:730624-730643 | Msa0623450:intron | 50.0% | |
| TTGAGTGCCAAGAGAGCAGA+TGG | - | chr4_3:730921-730940 | Msa0623450:intron | 50.0% | |
| TTCATGGTAGCTGGGGATAG+AGG | - | chr4_3:731042-731061 | Msa0623450:intron | 50.0% | |
| CACTGACACGAGATCCCTTT+GGG | + | chr4_3:731436-731455 | None:intergenic | 50.0% | |
| TCACTGACACGAGATCCCTT+TGG | + | chr4_3:731437-731456 | None:intergenic | 50.0% | |
| !! | TGTCGGTGTCACTTCTCTTG+TGG | - | chr4_3:731928-731947 | Msa0623450:intron | 50.0% |
| ! | TGCATAGGTTGGCTCCTCTT+TGG | - | chr4_3:731978-731997 | Msa0623450:CDS | 50.0% |
| ! | GCATAGGTTGGCTCCTCTTT+GGG | - | chr4_3:731979-731998 | Msa0623450:CDS | 50.0% |
| ! | GTACATTTTGCAGGGCCTAG+AGG | - | chr4_3:732033-732052 | Msa0623450:CDS | 50.0% |
| !! | GTTTTGAGCATATCCCTCGC+TGG | - | chr4_3:732326-732345 | Msa0623450:intron | 50.0% |
| ! | CTGGACTGGGATCTTTGATG+TGG | - | chr4_3:732345-732364 | Msa0623450:intron | 50.0% |
| GTATGTCCCACCACATTGTG+TGG | - | chr4_3:732594-732613 | Msa0623450:intron | 50.0% | |
| !! | GTGTTGTCAATAGCGGATCG+CGG | + | chr4_3:732936-732955 | None:intergenic | 50.0% |
| CGATCCGCTATTGACAACAC+TGG | - | chr4_3:732936-732955 | Msa0623450:intron | 50.0% | |
| CAACAGACTCGGAGAAAGAG+AGG | + | chr4_3:732987-733006 | None:intergenic | 50.0% | |
| !! | ATTTGAGACGTGGATTGGGG+TGG | - | chr4_3:733159-733178 | Msa0623450:intron | 50.0% |
| TGGCATCTTCCCAAAGTGGT+CGG | - | chr4_3:733179-733198 | Msa0623450:intron | 50.0% | |
| GAGCTCAAAACCGACCACTT+TGG | + | chr4_3:733192-733211 | None:intergenic | 50.0% | |
| GCTCTTCACATCCTTGGTGA+TGG | - | chr4_3:733208-733227 | Msa0623450:intron | 50.0% | |
| ! | AGGTGTGGCGGAGTAGTAGA+CGG | + | chr4_3:730153-730172 | None:intergenic | 55.0% |
| AGAACTCCGTCCCTCCAGAA+TGG | + | chr4_3:730615-730634 | None:intergenic | 55.0% | |
| TAGCTGGGGATAGAGGAGTG+AGG | - | chr4_3:731049-731068 | Msa0623450:intron | 55.0% | |
| TGGGGATAGAGGAGTGAGGA+AGG | - | chr4_3:731053-731072 | Msa0623450:intron | 55.0% | |
| ! | GAGTTTGGGATTTGGGCCAC+AGG | - | chr4_3:731146-731165 | Msa0623450:intron | 55.0% |
| TTGGGATTTGGGCCACAGGA+TGG | - | chr4_3:731150-731169 | Msa0623450:intron | 55.0% | |
| TGGGATTTGGGCCACAGGAT+GGG | - | chr4_3:731151-731170 | Msa0623450:intron | 55.0% | |
| GTCTACTTCCTCCCATCCTG+TGG | + | chr4_3:731165-731184 | None:intergenic | 55.0% | |
| GAAACACCAGAGGCCGATCA+AGG | + | chr4_3:731878-731897 | None:intergenic | 55.0% | |
| !! | GGTGTCACTTCTCTTGTGGC+AGG | - | chr4_3:731932-731951 | Msa0623450:intron | 55.0% |
| TCACTTCTCTTGTGGCAGGC+TGG | - | chr4_3:731936-731955 | Msa0623450:intron | 55.0% | |
| CACTTCTCTTGTGGCAGGCT+GGG | - | chr4_3:731937-731956 | Msa0623450:intron | 55.0% | |
| ! | TAGGTTGGCTCCTCTTTGGG+TGG | - | chr4_3:731982-732001 | Msa0623450:CDS | 55.0% |
| ! | AGGTTGGCTCCTCTTTGGGT+GGG | - | chr4_3:731983-732002 | Msa0623450:CDS | 55.0% |
| AGCATATCCCTCGCTGGACT+GGG | - | chr4_3:732332-732351 | Msa0623450:intron | 55.0% | |
| CAAAGATCCCAGTCCAGCGA+GGG | + | chr4_3:732342-732361 | None:intergenic | 55.0% | |
| TCAAAGATCCCAGTCCAGCG+AGG | + | chr4_3:732343-732362 | None:intergenic | 55.0% | |
| CGGAGTAGTAGACGGCGTGA+GGG | + | chr4_3:730145-730164 | None:intergenic | 60.0% | |
| CTCCGTCCCTCCAGAATGGA+AGG | + | chr4_3:730611-730630 | None:intergenic | 60.0% | |
| GATTTGGGCCACAGGATGGG+AGG | - | chr4_3:731154-731173 | Msa0623450:intron | 60.0% | |
| CTCCTTCCTTGATCGGCCTC+TGG | - | chr4_3:731869-731888 | Msa0623450:intron | 60.0% | |
| CACCAGAGGCCGATCAAGGA+AGG | + | chr4_3:731874-731893 | None:intergenic | 60.0% | |
| CCTCTAGCACCCACCCAAAG+AGG | + | chr4_3:731995-732014 | None:intergenic | 60.0% | |
| CCTCTTTGGGTGGGTGCTAG+AGG | - | chr4_3:731992-732011 | Msa0623450:CDS | 60.0% | |
| GAGCATATCCCTCGCTGGAC+TGG | - | chr4_3:732331-732350 | Msa0623450:intron | 60.0% | |
| GGGGTGGCATCTTCCCAAAG+TGG | - | chr4_3:733175-733194 | Msa0623450:intron | 60.0% | |
| GCGGAGTAGTAGACGGCGTG+AGG | + | chr4_3:730146-730165 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 729950 | 733815 | 729950 | ID=Msa0623450;Name=Msa0623450 |
| chr4_3 | mRNA | 729950 | 733815 | 729950 | ID=Msa0623450-mRNA-1;Parent=Msa0623450;Name=Msa0623450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=148|1|1|1|1|1|7|535|228 |
| chr4_3 | exon | 729950 | 730608 | 729950 | ID=Msa0623450-mRNA-1:exon:258;Parent=Msa0623450-mRNA-1 |
| chr4_3 | exon | 731315 | 731439 | 731315 | ID=Msa0623450-mRNA-1:exon:257;Parent=Msa0623450-mRNA-1 |
| chr4_3 | exon | 731696 | 731811 | 731696 | ID=Msa0623450-mRNA-1:exon:256;Parent=Msa0623450-mRNA-1 |
| chr4_3 | exon | 731978 | 732092 | 731978 | ID=Msa0623450-mRNA-1:exon:255;Parent=Msa0623450-mRNA-1 |
| chr4_3 | exon | 733246 | 733305 | 733246 | ID=Msa0623450-mRNA-1:exon:254;Parent=Msa0623450-mRNA-1 |
| chr4_3 | exon | 733412 | 733481 | 733412 | ID=Msa0623450-mRNA-1:exon:253;Parent=Msa0623450-mRNA-1 |
| chr4_3 | exon | 733591 | 733815 | 733591 | ID=Msa0623450-mRNA-1:exon:252;Parent=Msa0623450-mRNA-1 |
| chr4_3 | five_prime_UTR | 733668 | 733815 | 733668 | ID=Msa0623450-mRNA-1:five_prime_utr;Parent=Msa0623450-mRNA-1 |
| chr4_3 | CDS | 733591 | 733667 | 733591 | ID=Msa0623450-mRNA-1:cds;Parent=Msa0623450-mRNA-1 |
| chr4_3 | CDS | 733412 | 733481 | 733412 | ID=Msa0623450-mRNA-1:cds;Parent=Msa0623450-mRNA-1 |
| chr4_3 | CDS | 733246 | 733305 | 733246 | ID=Msa0623450-mRNA-1:cds;Parent=Msa0623450-mRNA-1 |
| chr4_3 | CDS | 731978 | 732092 | 731978 | ID=Msa0623450-mRNA-1:cds;Parent=Msa0623450-mRNA-1 |
| chr4_3 | CDS | 731696 | 731811 | 731696 | ID=Msa0623450-mRNA-1:cds;Parent=Msa0623450-mRNA-1 |
| chr4_3 | CDS | 731315 | 731439 | 731315 | ID=Msa0623450-mRNA-1:cds;Parent=Msa0623450-mRNA-1 |
| chr4_3 | CDS | 730485 | 730608 | 730485 | ID=Msa0623450-mRNA-1:cds;Parent=Msa0623450-mRNA-1 |
| chr4_3 | three_prime_UTR | 729950 | 730484 | 729950 | ID=Msa0623450-mRNA-1:three_prime_utr;Parent=Msa0623450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
