Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380130 | XP_003602965.1 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 8.54e-166 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380130 | sp|Q6DFI2|TM147_XENLA | 37.278 | 169 | 98 | 4 | 1 | 166 | 1 | 164 | 1.36e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380130 | G7J5Q0 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 4.08e-166 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0141790 | Msa0380130 | 0.807476 | 4.962537e-50 | -8.615850e-47 |
| Msa0380130 | Msa0429470 | 0.994229 | 1.409996e-205 | -8.615850e-47 |
| Msa0380130 | Msa0429580 | 0.934865 | 2.081279e-96 | -8.615850e-47 |
| Msa0380130 | Msa0623450 | 0.992064 | 4.244575e-191 | -8.615850e-47 |
| Msa0380130 | Msa1269530 | 0.993181 | 5.424213e-198 | -8.615850e-47 |
| Msa0380130 | Msa1339200 | 0.811823 | 5.772720e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380130 | MtrunA17_Chr3g0133291 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 7.85e-170 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380130 | AT1G47640.1 | 87.225 | 227 | 29 | 0 | 1 | 227 | 1 | 227 | 1.82e-149 | 415 |
Find 70 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTCCATTCCATATCTT+TGG | 0.207710 | 3_1:-81685453 | Msa0380130:three_prime_UTR |
| TGCATAGGTTGGCTCCTCTT+TGG | 0.231286 | 3_1:-81686990 | Msa0380130:CDS |
| CCTAGAGGCTAATGCAAATT+TGG | 0.264750 | 3_1:-81686920 | Msa0380130:intron |
| TAATAAAATCCAGGGTGTTT+TGG | 0.297926 | 3_1:-81685248 | Msa0380130:three_prime_UTR |
| AACATCAATAAAACCTATTA+AGG | 0.298184 | 3_1:+81687282 | None:intergenic |
| GCTCCATTGTCTGCTTCTTT+TGG | 0.299649 | 3_1:-81685630 | Msa0380130:three_prime_UTR |
| GCATAGGTTGGCTCCTCTTT+GGG | 0.301668 | 3_1:-81686989 | Msa0380130:CDS |
| CCAGCACACAAGTATATAAT+AGG | 0.316254 | 3_1:+81686570 | None:intergenic |
| AGCTCAAAACCGACCACTTT+GGG | 0.322717 | 3_1:+81685780 | None:intergenic |
| TCTCTGCCAGCTTATTTGTT+TGG | 0.326986 | 3_1:-81688518 | Msa0380130:intron |
| GAGCATATCCCTCGCTGGAC+TGG | 0.334400 | 3_1:-81686637 | Msa0380130:CDS |
| TACATGTTACACACCTGATA+TGG | 0.335870 | 3_1:+81688457 | None:intergenic |
| AACTGTGCGATTCTCACTTT+CGG | 0.343965 | 3_1:-81688849 | Msa0380130:CDS |
| GGGTCTTGGGTTTATTCTTT+CGG | 0.344658 | 3_1:+81686598 | None:intergenic |
| AGATATTTCTGTGAGTCAAC+TGG | 0.359727 | 3_1:+81687236 | None:intergenic |
| AGCTATTTGAGACGTGGATT+GGG | 0.361113 | 3_1:-81685813 | Msa0380130:CDS |
| CTAGAGGATTAGAATTTACT+TGG | 0.367682 | 3_1:-81686960 | Msa0380130:CDS |
| CAGCTATTTGAGACGTGGAT+TGG | 0.383715 | 3_1:-81685814 | Msa0380130:CDS |
| CCAAATTTGCATTAGCCTCT+AGG | 0.391836 | 3_1:+81686920 | None:intergenic |
| GCTAAGATAAACCAAAGATA+TGG | 0.400423 | 3_1:+81685442 | None:intergenic |
| AGTAAAGACCTTGTGATAGA+TGG | 0.402554 | 3_1:+81686531 | None:intergenic |
| CCTATTATATACTTGTGTGC+TGG | 0.408006 | 3_1:-81686570 | Msa0380130:CDS |
| CTATTATATACTTGTGTGCT+GGG | 0.411762 | 3_1:-81686569 | Msa0380130:CDS |
| AGCATATCCCTCGCTGGACT+GGG | 0.422684 | 3_1:-81686636 | Msa0380130:CDS |
| TGATAGCTTTGATCCATATC+AGG | 0.429031 | 3_1:-81688470 | Msa0380130:intron |
| TATAATAGGAATGAGGGTCT+TGG | 0.441236 | 3_1:+81686584 | None:intergenic |
| ATAATAGGAATGAGGGTCTT+GGG | 0.442787 | 3_1:+81686585 | None:intergenic |
| AATCACAAGTTTCAAGCAGT+TGG | 0.445704 | 3_1:-81687208 | Msa0380130:CDS |
| CCTCTTTGGGTGGGTGCTAG+AGG | 0.451531 | 3_1:-81686976 | Msa0380130:CDS |
| AACAACTAATAATAAAATCC+AGG | 0.456732 | 3_1:-81685257 | Msa0380130:three_prime_UTR |
| GAGCTCAAAACCGACCACTT+TGG | 0.467128 | 3_1:+81685779 | None:intergenic |
| GCTCTTCACATCCTTGGTGA+TGG | 0.469782 | 3_1:-81685760 | Msa0380130:CDS |
| AAAGAGAAAGAGAAAGAGAA+AGG | 0.486114 | 3_1:-81688947 | Msa0380130:five_prime_UTR |
| AGGTTGGCTCCTCTTTGGGT+GGG | 0.487173 | 3_1:-81686985 | Msa0380130:CDS |
| AAGTTTCAAGCAGTTGGACT+TGG | 0.494155 | 3_1:-81687202 | Msa0380130:intron |
| TCTGTGAGTCAACTGGGTTA+AGG | 0.496836 | 3_1:+81687243 | None:intergenic |
| AGAGAAAGAGAAAGGTGAAG+TGG | 0.502932 | 3_1:-81688939 | Msa0380130:five_prime_UTR |
| ACTGGGTTAAGGCAAAATAA+AGG | 0.503580 | 3_1:+81687254 | None:intergenic |
| TAGGTTGGCTCCTCTTTGGG+TGG | 0.506863 | 3_1:-81686986 | Msa0380130:CDS |
| TACTCAGAAAATAGTTATGT+AGG | 0.518456 | 3_1:+81685660 | None:intergenic |
| GATAAACCAAAGATATGGAA+TGG | 0.524667 | 3_1:+81685447 | None:intergenic |
| TCTCGCTACAGCATTAGTAA+AGG | 0.526454 | 3_1:-81688636 | Msa0380130:intron |
| ACAAGTATATAATAGGAATG+AGG | 0.541413 | 3_1:+81686577 | None:intergenic |
| TTCTGCAGCTATTTGAGACG+TGG | 0.544622 | 3_1:-81685819 | Msa0380130:intron |
| TGATTCTGTACTGCATAGGT+TGG | 0.545086 | 3_1:-81687001 | Msa0380130:CDS |
| GATATTTCTGTGAGTCAACT+GGG | 0.551092 | 3_1:+81687237 | None:intergenic |
| GCGGAGTAGTAGACGGCGTG+AGG | 0.553841 | 3_1:+81688825 | None:intergenic |
| CTGCCAAAAGAAGCAGACAA+TGG | 0.556661 | 3_1:+81685627 | None:intergenic |
| CAAGTATATAATAGGAATGA+GGG | 0.557618 | 3_1:+81686578 | None:intergenic |
| TTGCTGATTCTGTACTGCAT+AGG | 0.570050 | 3_1:-81687005 | Msa0380130:CDS |
| TGGCATCTTCCCAAAGTGGT+CGG | 0.572570 | 3_1:-81685789 | Msa0380130:CDS |
| CCTCTAGCACCCACCCAAAG+AGG | 0.575616 | 3_1:+81686976 | None:intergenic |
| ACAACTAATAATAAAATCCA+GGG | 0.580652 | 3_1:-81685256 | Msa0380130:three_prime_UTR |
| TAGAGGATTAGAATTTACTT+GGG | 0.589952 | 3_1:-81686959 | Msa0380130:CDS |
| AGACCTTGTGATAGATGGCA+TGG | 0.593404 | 3_1:+81686536 | None:intergenic |
| TAGCAGCTTTCTCAAGCTGA+AGG | 0.600485 | 3_1:+81685699 | None:intergenic |
| ATTTGAGACGTGGATTGGGG+TGG | 0.610413 | 3_1:-81685809 | Msa0380130:CDS |
| CAAAGATCCCAGTCCAGCGA+GGG | 0.611270 | 3_1:+81686629 | None:intergenic |
| GCTATTTGAGACGTGGATTG+GGG | 0.613941 | 3_1:-81685812 | Msa0380130:CDS |
| CTGGACTGGGATCTTTGATG+TGG | 0.618650 | 3_1:-81686623 | Msa0380130:CDS |
| AGGTGTGGCGGAGTAGTAGA+CGG | 0.628616 | 3_1:+81688818 | None:intergenic |
| CTACCATGCCATCTATCACA+AGG | 0.634671 | 3_1:-81686539 | Msa0380130:intron |
| AAAAGATCAGAATCAGATGA+CGG | 0.640988 | 3_1:-81688886 | Msa0380130:exon |
| CGGAGTAGTAGACGGCGTGA+GGG | 0.654035 | 3_1:+81688826 | None:intergenic |
| AGATCTGAGTATGATACACT+CGG | 0.676121 | 3_1:-81688686 | Msa0380130:CDS |
| GGGGTGGCATCTTCCCAAAG+TGG | 0.678666 | 3_1:-81685793 | Msa0380130:CDS |
| AAGTACTTACAAAGGTGTGG+CGG | 0.688668 | 3_1:+81688806 | None:intergenic |
| ACTTATAAAAGCCATCACCA+AGG | 0.688750 | 3_1:+81685749 | None:intergenic |
| TCAAAGATCCCAGTCCAGCG+AGG | 0.696797 | 3_1:+81686628 | None:intergenic |
| TGTAGCGAGATAAACAACTG+CGG | 0.776602 | 3_1:+81688649 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTATCATAATAAAT+AGG | + | chr3_1:81686591-81686610 | None:intergenic | 10.0% |
| !!! | GTTTTTCCTAAATTATAATA+AGG | - | chr3_1:81685790-81685809 | Msa0380130:CDS | 15.0% |
| !!! | AACTAATTTAAAGGTATTTT+GGG | + | chr3_1:81685988-81686007 | None:intergenic | 15.0% |
| !!! | AAACTAATTTAAAGGTATTT+TGG | + | chr3_1:81685989-81686008 | None:intergenic | 15.0% |
| !! | TGAGATAATTACTATAATTA+CGG | - | chr3_1:81686022-81686041 | Msa0380130:intron | 15.0% |
| !! | TTTATCATAATAAATAGGAA+TGG | + | chr3_1:81686586-81686605 | None:intergenic | 15.0% |
| !! | CTATAAGAATATATGAAAAT+TGG | + | chr3_1:81686819-81686838 | None:intergenic | 15.0% |
| !! | ACAACAAACATAATAAAATA+TGG | + | chr3_1:81686846-81686865 | None:intergenic | 15.0% |
| !!! | TTTTATAATCCAACATTAAT+TGG | - | chr3_1:81687399-81687418 | Msa0380130:intron | 15.0% |
| !! | TACCACAAAAAAAAATTAAT+AGG | + | chr3_1:81688675-81688694 | None:intergenic | 15.0% |
| !! | TATTAGTTAGAGAGTTAATT+AGG | + | chr3_1:81685629-81685648 | None:intergenic | 20.0% |
| !! | ACTACACCTTATTATAATTT+AGG | + | chr3_1:81685799-81685818 | None:intergenic | 20.0% |
| !! | CCATTAAGAAACTAATTTAA+AGG | + | chr3_1:81685997-81686016 | None:intergenic | 20.0% |
| !!! | CCTTTAAATTAGTTTCTTAA+TGG | - | chr3_1:81685994-81686013 | Msa0380130:intron | 20.0% |
| !! | GAGATAATTACTATAATTAC+GGG | - | chr3_1:81686023-81686042 | Msa0380130:intron | 20.0% |
| !! | AAATTATCTCCTAATTACAT+TGG | + | chr3_1:81686188-81686207 | None:intergenic | 20.0% |
| !! | TAAATAAACAAAAGATAGCA+CGG | + | chr3_1:81686440-81686459 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGTTTGTTGTC+TGG | - | chr3_1:81686847-81686866 | Msa0380130:intron | 20.0% |
| !! | AACATCAATAAAACCTATTA+AGG | + | chr3_1:81686914-81686933 | None:intergenic | 20.0% |
| !!! | TTTTAAATTTATGTGCATCT+TGG | - | chr3_1:81687054-81687073 | Msa0380130:intron | 20.0% |
| !! | TGTAAAAAATTCAAAACTCT+AGG | + | chr3_1:81687337-81687356 | None:intergenic | 20.0% |
| !!! | TTTTTACAATCCACATTAAT+TGG | - | chr3_1:81687349-81687368 | Msa0380130:intron | 20.0% |
| !!! | AATGATTTAAAACAAGAAGA+GGG | - | chr3_1:81687868-81687887 | Msa0380130:intron | 20.0% |
| !!! | TGAATTTTAAATAAACTGCA+TGG | + | chr3_1:81688595-81688614 | None:intergenic | 20.0% |
| !!! | TACTTTTGTTTCAAAACAAT+TGG | - | chr3_1:81688778-81688797 | Msa0380130:intron | 20.0% |
| !!! | TTGTTTTCTAATTGTATCTT+TGG | - | chr3_1:81688830-81688849 | Msa0380130:CDS | 20.0% |
| !! | AACAACTAATAATAAAATCC+AGG | - | chr3_1:81688936-81688955 | Msa0380130:five_prime_UTR | 20.0% |
| !! | ACAACTAATAATAAAATCCA+GGG | - | chr3_1:81688937-81688956 | Msa0380130:five_prime_UTR | 20.0% |
| !!! | TTTTGTAGTATATTTACTCA+AGG | - | chr3_1:81689002-81689021 | Msa0380130:five_prime_UTR | 20.0% |
| !!! | GAATGAAAAAGTACTTACAA+AGG | + | chr3_1:81685398-81685417 | None:intergenic | 25.0% |
| ! | TTAGGTTTGAAGATGTAAAA+AGG | + | chr3_1:81685611-81685630 | None:intergenic | 25.0% |
| ! | TTCTTAAGTGTGATAAATGA+TGG | - | chr3_1:81686206-81686225 | Msa0380130:intron | 25.0% |
| !! | GATTTTCTTATAACTGTTCA+TGG | - | chr3_1:81686251-81686270 | Msa0380130:intron | 25.0% |
| ! | TTAAATCATTATCTCTAGCA+GGG | + | chr3_1:81686312-81686331 | None:intergenic | 25.0% |
| ! | TTTAAATCATTATCTCTAGC+AGG | + | chr3_1:81686313-81686332 | None:intergenic | 25.0% |
| !! | TAGAGATAATGATTTAAAGC+AGG | - | chr3_1:81686315-81686334 | Msa0380130:intron | 25.0% |
| !! | AGAGATAATGATTTAAAGCA+GGG | - | chr3_1:81686316-81686335 | Msa0380130:intron | 25.0% |
| ! | AAATAAACAAAAGATAGCAC+GGG | + | chr3_1:81686439-81686458 | None:intergenic | 25.0% |
| !!! | CGTTTGGTATATTTTGTTTA+TGG | - | chr3_1:81686505-81686524 | Msa0380130:intron | 25.0% |
| ! | ACTTAAATTTCAGCATAAGT+AGG | - | chr3_1:81686607-81686626 | Msa0380130:CDS | 25.0% |
| !!! | CTGTTTTTGAGAAATTACAA+TGG | - | chr3_1:81686773-81686792 | Msa0380130:intron | 25.0% |
| !! | TTGTCTGGAATAATAACAAA+TGG | - | chr3_1:81686862-81686881 | Msa0380130:intron | 25.0% |
| !!! | TGTTTTTCAGGAATTTTTGA+AGG | - | chr3_1:81686888-81686907 | Msa0380130:intron | 25.0% |
| ! | TAGAGGATTAGAATTTACTT+GGG | - | chr3_1:81687234-81687253 | Msa0380130:CDS | 25.0% |
| ! | TGCATTATTCCAATTAATGT+TGG | + | chr3_1:81687411-81687430 | None:intergenic | 25.0% |
| ! | CAAGTATATAATAGGAATGA+GGG | + | chr3_1:81687618-81687637 | None:intergenic | 25.0% |
| ! | ACAAGTATATAATAGGAATG+AGG | + | chr3_1:81687619-81687638 | None:intergenic | 25.0% |
| !!! | ACTGATGTCATTTTAATTTG+AGG | - | chr3_1:81687730-81687749 | Msa0380130:intron | 25.0% |
| !!! | TTCTTGTTTTAAATCATTGC+AGG | + | chr3_1:81687866-81687885 | None:intergenic | 25.0% |
| !! | CAATGATTTAAAACAAGAAG+AGG | - | chr3_1:81687867-81687886 | Msa0380130:intron | 25.0% |
| ! | TTGTACTAAATAACATATCG+TGG | + | chr3_1:81688068-81688087 | None:intergenic | 25.0% |
| ! | TACTCAGAAAATAGTTATGT+AGG | + | chr3_1:81688536-81688555 | None:intergenic | 25.0% |
| !!! | CGCCTATTAATTTTTTTTTG+TGG | - | chr3_1:81688670-81688689 | Msa0380130:CDS | 25.0% |
| !!! | TTTTTTTTGTGGTAGAATGT+TGG | - | chr3_1:81688681-81688700 | Msa0380130:CDS | 25.0% |
| AAAGAGAAAGAGAAAGAGAA+AGG | - | chr3_1:81685246-81685265 | Msa0380130:three_prime_UTR | 30.0% | |
| AAAAGATCAGAATCAGATGA+CGG | - | chr3_1:81685307-81685326 | Msa0380130:three_prime_UTR | 30.0% | |
| !! | AAAAAGTACTTACAAAGGTG+TGG | + | chr3_1:81685393-81685412 | None:intergenic | 30.0% |
| ! | AGTTTTCATGATGCGAAATT+GGG | + | chr3_1:81685457-81685476 | None:intergenic | 30.0% |
| ! | TAGTTTTCATGATGCGAAAT+TGG | + | chr3_1:81685458-81685477 | None:intergenic | 30.0% |
| TCCTTAATAAGTGTGAAAGT+AGG | - | chr3_1:81686108-81686127 | Msa0380130:intron | 30.0% | |
| ACCTACTTTCACACTTATTA+AGG | + | chr3_1:81686112-81686131 | None:intergenic | 30.0% | |
| TATCTCCTAATTACATTGGA+GGG | + | chr3_1:81686184-81686203 | None:intergenic | 30.0% | |
| TTATCTCCTAATTACATTGG+AGG | + | chr3_1:81686185-81686204 | None:intergenic | 30.0% | |
| TGGATACAAGAGAATATTTG+TGG | - | chr3_1:81686226-81686245 | Msa0380130:intron | 30.0% | |
| ATACAAGAGAATATTTGTGG+AGG | - | chr3_1:81686229-81686248 | Msa0380130:intron | 30.0% | |
| ! | TAATGATTTAAAGCAGGGAT+AGG | - | chr3_1:81686321-81686340 | Msa0380130:intron | 30.0% |
| ! | AATGATTTAAAGCAGGGATA+GGG | - | chr3_1:81686322-81686341 | Msa0380130:intron | 30.0% |
| !!! | TAGCCAATCATTTTGAGTTT+GGG | - | chr3_1:81686357-81686376 | Msa0380130:intron | 30.0% |
| AATCCCAAACTCAAAATGAT+TGG | + | chr3_1:81686363-81686382 | None:intergenic | 30.0% | |
| !!! | ATCATTTTGAGTTTGGGATT+TGG | - | chr3_1:81686363-81686382 | Msa0380130:intron | 30.0% |
| !!! | TCATTTTGAGTTTGGGATTT+GGG | - | chr3_1:81686364-81686383 | Msa0380130:intron | 30.0% |
| CAAAATATACCAAACGCTTA+AGG | + | chr3_1:81686501-81686520 | None:intergenic | 30.0% | |
| CATAATAAATAGGAATGGCA+AGG | + | chr3_1:81686581-81686600 | None:intergenic | 30.0% | |
| TAAATTTCAGCATAAGTAGG+CGG | - | chr3_1:81686610-81686629 | Msa0380130:CDS | 30.0% | |
| !!! | AACAAATGGCTTTGTTTTTC+AGG | - | chr3_1:81686876-81686895 | Msa0380130:intron | 30.0% |
| !! | GAATTTTTGAAGGCCTTAAT+AGG | - | chr3_1:81686898-81686917 | Msa0380130:intron | 30.0% |
| !!! | ATAGGTTTTATTGATGTTGC+TGG | - | chr3_1:81686916-81686935 | Msa0380130:intron | 30.0% |
| CTAGAGGATTAGAATTTACT+TGG | - | chr3_1:81687233-81687252 | Msa0380130:CDS | 30.0% | |
| ! | CTGTGTTATTCCAATTAATG+TGG | + | chr3_1:81687362-81687381 | None:intergenic | 30.0% |
| AGTTTGTCAATGTTGTTATG+TGG | - | chr3_1:81687433-81687452 | Msa0380130:intron | 30.0% | |
| TCAATGTTGTTATGTGGTAT+AGG | - | chr3_1:81687439-81687458 | Msa0380130:intron | 30.0% | |
| CTATTATATACTTGTGTGCT+GGG | - | chr3_1:81687624-81687643 | Msa0380130:intron | 30.0% | |
| TTAGAAGAAAAATCCCAGTT+AGG | + | chr3_1:81687935-81687954 | None:intergenic | 30.0% | |
| CTATATAACAACACTCATTG+AGG | + | chr3_1:81687997-81688016 | None:intergenic | 30.0% | |
| GTGTTTCAAATAGATTACAG+TGG | - | chr3_1:81688089-81688108 | Msa0380130:intron | 30.0% | |
| ! | TGATAAAAGACCTGTCTTTT+TGG | - | chr3_1:81688250-81688269 | Msa0380130:intron | 30.0% |
| ! | AATCACTGGTCTATTAGATA+TGG | - | chr3_1:81688277-81688296 | Msa0380130:intron | 30.0% |
| GATAAACCAAAGATATGGAA+TGG | + | chr3_1:81688749-81688768 | None:intergenic | 30.0% | |
| GCTAAGATAAACCAAAGATA+TGG | + | chr3_1:81688754-81688773 | None:intergenic | 30.0% | |
| !!! | TTAAGATGACTGTTTTAACG+AGG | - | chr3_1:81688859-81688878 | Msa0380130:CDS | 30.0% |
| !! | TAATAAAATCCAGGGTGTTT+TGG | - | chr3_1:81688945-81688964 | Msa0380130:five_prime_UTR | 30.0% |
| ! | TTTTCATGATGCGAAATTGG+GGG | + | chr3_1:81685455-81685474 | None:intergenic | 35.0% |
| ! | GTTTTCATGATGCGAAATTG+GGG | + | chr3_1:81685456-81685475 | None:intergenic | 35.0% |
| AGATCTGAGTATGATACACT+CGG | - | chr3_1:81685507-81685526 | Msa0380130:three_prime_UTR | 35.0% | |
| AAGTAGCCAAACAAATAAGC+TGG | + | chr3_1:81685684-81685703 | None:intergenic | 35.0% | |
| !!! | TTGTTTGGCTACTTTTCTCA+AGG | - | chr3_1:81685690-81685709 | Msa0380130:three_prime_UTR | 35.0% |
| !! | TGATAGCTTTGATCCATATC+AGG | - | chr3_1:81685723-81685742 | Msa0380130:CDS | 35.0% |
| TACATGTTACACACCTGATA+TGG | + | chr3_1:81685739-81685758 | None:intergenic | 35.0% | |
| AGATACCCTCCAATGTAATT+AGG | - | chr3_1:81686176-81686195 | Msa0380130:intron | 35.0% | |
| TTATAACTGTTCATGGTAGC+TGG | - | chr3_1:81686258-81686277 | Msa0380130:intron | 35.0% | |
| TATAACTGTTCATGGTAGCT+GGG | - | chr3_1:81686259-81686278 | Msa0380130:intron | 35.0% | |
| !!! | GTAGCCAATCATTTTGAGTT+TGG | - | chr3_1:81686356-81686375 | Msa0380130:intron | 35.0% |
| AGATACTGCAGAATCTTGAA+GGG | + | chr3_1:81686413-81686432 | None:intergenic | 35.0% | |
| ! | CATCTAAAACCTTAAGCGTT+TGG | - | chr3_1:81686489-81686508 | Msa0380130:intron | 35.0% |
| TATCAATGCATAAAGCCCAA+AGG | - | chr3_1:81686643-81686662 | Msa0380130:CDS | 35.0% | |
| ATCAATGCATAAAGCCCAAA+GGG | - | chr3_1:81686644-81686663 | Msa0380130:CDS | 35.0% | |
| ! | GCCTAAAAGCTTAAGCTTTT+GGG | - | chr3_1:81686714-81686733 | Msa0380130:intron | 35.0% |
| ! | TCCCAAAAGCTTAAGCTTTT+AGG | + | chr3_1:81686718-81686737 | None:intergenic | 35.0% |
| ACTGGGTTAAGGCAAAATAA+AGG | + | chr3_1:81686942-81686961 | None:intergenic | 35.0% | |
| ! | GATATTTCTGTGAGTCAACT+GGG | + | chr3_1:81686959-81686978 | None:intergenic | 35.0% |
| ! | AGATATTTCTGTGAGTCAAC+TGG | + | chr3_1:81686960-81686979 | None:intergenic | 35.0% |
| AATCACAAGTTTCAAGCAGT+TGG | - | chr3_1:81686985-81687004 | Msa0380130:CDS | 35.0% | |
| AATAGCAAAAGAAACACCAG+AGG | + | chr3_1:81687113-81687132 | None:intergenic | 35.0% | |
| CTTCTCTAACTTTCACTTGT+CGG | - | chr3_1:81687136-81687155 | Msa0380130:intron | 35.0% | |
| TTTCTGCACTTTATCTGTAC+AGG | - | chr3_1:81687529-81687548 | Msa0380130:intron | 35.0% | |
| ATAATAGGAATGAGGGTCTT+GGG | + | chr3_1:81687611-81687630 | None:intergenic | 35.0% | |
| TATAATAGGAATGAGGGTCT+TGG | + | chr3_1:81687612-81687631 | None:intergenic | 35.0% | |
| CCAGCACACAAGTATATAAT+AGG | + | chr3_1:81687626-81687645 | None:intergenic | 35.0% | |
| CCTATTATATACTTGTGTGC+TGG | - | chr3_1:81687623-81687642 | Msa0380130:intron | 35.0% | |
| AGTAAAGACCTTGTGATAGA+TGG | + | chr3_1:81687665-81687684 | None:intergenic | 35.0% | |
| ! | TCTAGCACTCACTCTTTTAT+TGG | - | chr3_1:81687785-81687804 | Msa0380130:intron | 35.0% |
| GTGATTCTATCCAAAAAGAC+AGG | + | chr3_1:81688263-81688282 | None:intergenic | 35.0% | |
| ! | GTCTTTTTGGATAGAATCAC+TGG | - | chr3_1:81688263-81688282 | Msa0380130:intron | 35.0% |
| AAACACTACGCTACAGTAAA+TGG | + | chr3_1:81688341-81688360 | None:intergenic | 35.0% | |
| ACTTATAAAAGCCATCACCA+AGG | + | chr3_1:81688447-81688466 | None:intergenic | 35.0% | |
| !!! | TGGTGATGGCTTTTATAAGT+TGG | - | chr3_1:81688447-81688466 | Msa0380130:intron | 35.0% |
| TTCTCTCCATTCCATATCTT+TGG | - | chr3_1:81688740-81688759 | Msa0380130:intron | 35.0% | |
| AGAGAAAGAGAAAGGTGAAG+TGG | - | chr3_1:81685254-81685273 | Msa0380130:three_prime_UTR | 40.0% | |
| AACTGTGCGATTCTCACTTT+CGG | - | chr3_1:81685344-81685363 | Msa0380130:three_prime_UTR | 40.0% | |
| ! | AAGTACTTACAAAGGTGTGG+CGG | + | chr3_1:81685390-81685409 | None:intergenic | 40.0% |
| TGTAGCGAGATAAACAACTG+CGG | + | chr3_1:81685547-81685566 | None:intergenic | 40.0% | |
| TCTCGCTACAGCATTAGTAA+AGG | - | chr3_1:81685557-81685576 | Msa0380130:three_prime_UTR | 40.0% | |
| ACAAATAAGCTGGCAGAGAA+AGG | + | chr3_1:81685674-81685693 | None:intergenic | 40.0% | |
| TCTCTGCCAGCTTATTTGTT+TGG | - | chr3_1:81685675-81685694 | Msa0380130:three_prime_UTR | 40.0% | |
| ! | AGCTCTAATTCCTTCCATTC+TGG | - | chr3_1:81685823-81685842 | Msa0380130:intron | 40.0% |
| TCTAATTCCTTCCATTCTGG+AGG | - | chr3_1:81685826-81685845 | Msa0380130:intron | 40.0% | |
| CTAATTCCTTCCATTCTGGA+GGG | - | chr3_1:81685827-81685846 | Msa0380130:intron | 40.0% | |
| CACAAGAGTGAAGCATGAAA+TGG | + | chr3_1:81685890-81685909 | None:intergenic | 40.0% | |
| ATAACTGTTCATGGTAGCTG+GGG | - | chr3_1:81686260-81686279 | Msa0380130:intron | 40.0% | |
| GATACTGCAGAATCTTGAAG+GGG | + | chr3_1:81686412-81686431 | None:intergenic | 40.0% | |
| GAGATACTGCAGAATCTTGA+AGG | + | chr3_1:81686414-81686433 | None:intergenic | 40.0% | |
| ! | CGCCTAAAAGCTTAAGCTTT+TGG | - | chr3_1:81686713-81686732 | Msa0380130:intron | 40.0% |
| !!! | GCTTAAGCTTTTGGGATAGA+TGG | - | chr3_1:81686722-81686741 | Msa0380130:intron | 40.0% |
| !!! | CTTTTGGGATAGATGGTTCA+TGG | - | chr3_1:81686729-81686748 | Msa0380130:intron | 40.0% |
| AAGTTTCAAGCAGTTGGACT+TGG | - | chr3_1:81686991-81687010 | Msa0380130:CDS | 40.0% | |
| TGATGTTCTCCTTCCTTGAT+CGG | - | chr3_1:81687087-81687106 | Msa0380130:intron | 40.0% | |
| !! | TTGCTGATTCTGTACTGCAT+AGG | - | chr3_1:81687188-81687207 | Msa0380130:intron | 40.0% |
| TGATTCTGTACTGCATAGGT+TGG | - | chr3_1:81687192-81687211 | Msa0380130:intron | 40.0% | |
| !! | TACTTGGGAGTACATTTTGC+AGG | - | chr3_1:81687249-81687268 | Msa0380130:CDS | 40.0% |
| !! | ACTTGGGAGTACATTTTGCA+GGG | - | chr3_1:81687250-81687269 | Msa0380130:CDS | 40.0% |
| ! | CCAAATTTGCATTAGCCTCT+AGG | + | chr3_1:81687276-81687295 | None:intergenic | 40.0% |
| CCTAGAGGCTAATGCAAATT+TGG | - | chr3_1:81687273-81687292 | Msa0380130:CDS | 40.0% | |
| !! | TTGGTACGTTCTTTAGCTCT+CGG | - | chr3_1:81687292-81687311 | Msa0380130:CDS | 40.0% |
| GGGTCTTGGGTTTATTCTTT+CGG | + | chr3_1:81687598-81687617 | None:intergenic | 40.0% | |
| ! | GCACTCACTCTTTTATTGGA+TGG | - | chr3_1:81687789-81687808 | Msa0380130:intron | 40.0% |
| CAAATAGAACCCACACAATG+TGG | + | chr3_1:81687832-81687851 | None:intergenic | 40.0% | |
| TGTTGCTAACACTACCTAAC+TGG | - | chr3_1:81687918-81687937 | Msa0380130:intron | 40.0% | |
| GTTGCTAACACTACCTAACT+GGG | - | chr3_1:81687919-81687938 | Msa0380130:intron | 40.0% | |
| GCTATAGCGCAATTGTTTAG+TGG | - | chr3_1:81688019-81688038 | Msa0380130:intron | 40.0% | |
| GCTATAGCATTGTAGCATAG+TGG | - | chr3_1:81688113-81688132 | Msa0380130:intron | 40.0% | |
| GGAGAAAGAGAGGTAAAAGT+TGG | + | chr3_1:81688202-81688221 | None:intergenic | 40.0% | |
| GGTCTATTAGATATGGTGCT+TGG | - | chr3_1:81688284-81688303 | Msa0380130:intron | 40.0% | |
| ! | AGCTATTTGAGACGTGGATT+GGG | - | chr3_1:81688380-81688399 | Msa0380130:intron | 40.0% |
| ! | TTTTGAGCTCTTCACATCCT+TGG | - | chr3_1:81688427-81688446 | Msa0380130:intron | 40.0% |
| CAAAAAACACCAAAACACCC+TGG | + | chr3_1:81688957-81688976 | None:intergenic | 40.0% | |
| ATCATTGCCATCTGCTCTCT+TGG | + | chr3_1:81686156-81686175 | None:intergenic | 45.0% | |
| TCTGTGAGTCAACTGGGTTA+AGG | + | chr3_1:81686953-81686972 | None:intergenic | 45.0% | |
| CTACCATGCCATCTATCACA+AGG | - | chr3_1:81687654-81687673 | Msa0380130:intron | 45.0% | |
| AGACCTTGTGATAGATGGCA+TGG | + | chr3_1:81687660-81687679 | None:intergenic | 45.0% | |
| TATGTCCCACCACATTGTGT+GGG | - | chr3_1:81687820-81687839 | Msa0380130:intron | 45.0% | |
| TAGAACCCACACAATGTGGT+GGG | + | chr3_1:81687828-81687847 | None:intergenic | 45.0% | |
| ATAGAACCCACACAATGTGG+TGG | + | chr3_1:81687829-81687848 | None:intergenic | 45.0% | |
| ! | CTCATTGAGGCTTTTGTGCT+TGG | + | chr3_1:81687984-81688003 | None:intergenic | 45.0% |
| GAAGCCAGTGTTGTCAATAG+CGG | + | chr3_1:81688168-81688187 | None:intergenic | 45.0% | |
| TATCTACGCAGCAACAGACT+CGG | + | chr3_1:81688223-81688242 | None:intergenic | 45.0% | |
| ! | TTCTGCAGCTATTTGAGACG+TGG | - | chr3_1:81688374-81688393 | Msa0380130:intron | 45.0% |
| ! | CAGCTATTTGAGACGTGGAT+TGG | - | chr3_1:81688379-81688398 | Msa0380130:intron | 45.0% |
| ! | GCTATTTGAGACGTGGATTG+GGG | - | chr3_1:81688381-81688400 | Msa0380130:intron | 45.0% |
| AGCTCAAAACCGACCACTTT+GGG | + | chr3_1:81688416-81688435 | None:intergenic | 45.0% | |
| TAGCAGCTTTCTCAAGCTGA+AGG | + | chr3_1:81688497-81688516 | None:intergenic | 45.0% | |
| ! | GCTCCATTGTCTGCTTCTTT+TGG | - | chr3_1:81688563-81688582 | Msa0380130:intron | 45.0% |
| CTGCCAAAAGAAGCAGACAA+TGG | + | chr3_1:81688569-81688588 | None:intergenic | 45.0% | |
| ! | TTCCTTCCATTCTGGAGGGA+CGG | - | chr3_1:81685831-81685850 | Msa0380130:intron | 50.0% |
| GACGGAGTTCTTGTCTGTGT+AGG | - | chr3_1:81685849-81685868 | Msa0380130:intron | 50.0% | |
| TTGAGTGCCAAGAGAGCAGA+TGG | - | chr3_1:81686146-81686165 | Msa0380130:intron | 50.0% | |
| TTCATGGTAGCTGGGGATAG+AGG | - | chr3_1:81686267-81686286 | Msa0380130:intron | 50.0% | |
| CACTGACACGAGATCCCTTT+GGG | + | chr3_1:81686661-81686680 | None:intergenic | 50.0% | |
| TCACTGACACGAGATCCCTT+TGG | + | chr3_1:81686662-81686681 | None:intergenic | 50.0% | |
| !! | TGTCGGTGTCACTTCTCTTG+TGG | - | chr3_1:81687153-81687172 | Msa0380130:intron | 50.0% |
| ! | TGCATAGGTTGGCTCCTCTT+TGG | - | chr3_1:81687203-81687222 | Msa0380130:CDS | 50.0% |
| ! | GCATAGGTTGGCTCCTCTTT+GGG | - | chr3_1:81687204-81687223 | Msa0380130:CDS | 50.0% |
| ! | GTACATTTTGCAGGGCCTAG+AGG | - | chr3_1:81687258-81687277 | Msa0380130:CDS | 50.0% |
| !! | GTTTTGAGCATATCCCTCGC+TGG | - | chr3_1:81687551-81687570 | Msa0380130:intron | 50.0% |
| ! | CTGGACTGGGATCTTTGATG+TGG | - | chr3_1:81687570-81687589 | Msa0380130:intron | 50.0% |
| GTATGTCCCACCACATTGTG+TGG | - | chr3_1:81687819-81687838 | Msa0380130:intron | 50.0% | |
| !! | GTGTTGTCAATAGCGGATCG+CGG | + | chr3_1:81688161-81688180 | None:intergenic | 50.0% |
| CGATCCGCTATTGACAACAC+TGG | - | chr3_1:81688161-81688180 | Msa0380130:intron | 50.0% | |
| CAACAGACTCGGAGAAAGAG+AGG | + | chr3_1:81688212-81688231 | None:intergenic | 50.0% | |
| !! | ATTTGAGACGTGGATTGGGG+TGG | - | chr3_1:81688384-81688403 | Msa0380130:intron | 50.0% |
| TGGCATCTTCCCAAAGTGGT+CGG | - | chr3_1:81688404-81688423 | Msa0380130:intron | 50.0% | |
| GAGCTCAAAACCGACCACTT+TGG | + | chr3_1:81688417-81688436 | None:intergenic | 50.0% | |
| GCTCTTCACATCCTTGGTGA+TGG | - | chr3_1:81688433-81688452 | Msa0380130:intron | 50.0% | |
| ! | AGGTGTGGCGGAGTAGTAGA+CGG | + | chr3_1:81685378-81685397 | None:intergenic | 55.0% |
| AGAACTCCGTCCCTCCAGAA+TGG | + | chr3_1:81685840-81685859 | None:intergenic | 55.0% | |
| TAGCTGGGGATAGAGGAGTG+AGG | - | chr3_1:81686274-81686293 | Msa0380130:intron | 55.0% | |
| TGGGGATAGAGGAGTGAGGA+AGG | - | chr3_1:81686278-81686297 | Msa0380130:intron | 55.0% | |
| ! | GAGTTTGGGATTTGGGCCAC+AGG | - | chr3_1:81686371-81686390 | Msa0380130:intron | 55.0% |
| TTGGGATTTGGGCCACAGGA+TGG | - | chr3_1:81686375-81686394 | Msa0380130:intron | 55.0% | |
| TGGGATTTGGGCCACAGGAT+GGG | - | chr3_1:81686376-81686395 | Msa0380130:intron | 55.0% | |
| GTCTACTTCCTCCCATCCTG+TGG | + | chr3_1:81686390-81686409 | None:intergenic | 55.0% | |
| GAAACACCAGAGGCCGATCA+AGG | + | chr3_1:81687103-81687122 | None:intergenic | 55.0% | |
| !! | GGTGTCACTTCTCTTGTGGC+AGG | - | chr3_1:81687157-81687176 | Msa0380130:intron | 55.0% |
| TCACTTCTCTTGTGGCAGGC+TGG | - | chr3_1:81687161-81687180 | Msa0380130:intron | 55.0% | |
| CACTTCTCTTGTGGCAGGCT+GGG | - | chr3_1:81687162-81687181 | Msa0380130:intron | 55.0% | |
| ! | TAGGTTGGCTCCTCTTTGGG+TGG | - | chr3_1:81687207-81687226 | Msa0380130:CDS | 55.0% |
| ! | AGGTTGGCTCCTCTTTGGGT+GGG | - | chr3_1:81687208-81687227 | Msa0380130:CDS | 55.0% |
| AGCATATCCCTCGCTGGACT+GGG | - | chr3_1:81687557-81687576 | Msa0380130:intron | 55.0% | |
| CAAAGATCCCAGTCCAGCGA+GGG | + | chr3_1:81687567-81687586 | None:intergenic | 55.0% | |
| TCAAAGATCCCAGTCCAGCG+AGG | + | chr3_1:81687568-81687587 | None:intergenic | 55.0% | |
| CGGAGTAGTAGACGGCGTGA+GGG | + | chr3_1:81685370-81685389 | None:intergenic | 60.0% | |
| CTCCGTCCCTCCAGAATGGA+AGG | + | chr3_1:81685836-81685855 | None:intergenic | 60.0% | |
| GATTTGGGCCACAGGATGGG+AGG | - | chr3_1:81686379-81686398 | Msa0380130:intron | 60.0% | |
| CTCCTTCCTTGATCGGCCTC+TGG | - | chr3_1:81687094-81687113 | Msa0380130:intron | 60.0% | |
| CACCAGAGGCCGATCAAGGA+AGG | + | chr3_1:81687099-81687118 | None:intergenic | 60.0% | |
| CCTCTAGCACCCACCCAAAG+AGG | + | chr3_1:81687220-81687239 | None:intergenic | 60.0% | |
| CCTCTTTGGGTGGGTGCTAG+AGG | - | chr3_1:81687217-81687236 | Msa0380130:CDS | 60.0% | |
| GAGCATATCCCTCGCTGGAC+TGG | - | chr3_1:81687556-81687575 | Msa0380130:intron | 60.0% | |
| GGGGTGGCATCTTCCCAAAG+TGG | - | chr3_1:81688400-81688419 | Msa0380130:intron | 60.0% | |
| GCGGAGTAGTAGACGGCGTG+AGG | + | chr3_1:81685371-81685390 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 81685175 | 81689040 | 81685175 | ID=Msa0380130;Name=Msa0380130 |
| chr3_1 | mRNA | 81685175 | 81689040 | 81685175 | ID=Msa0380130-mRNA-1;Parent=Msa0380130;Name=Msa0380130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=148|1|1|1|1|1|7|535|228 |
| chr3_1 | exon | 81685175 | 81685833 | 81685175 | ID=Msa0380130-mRNA-1:exon:20798;Parent=Msa0380130-mRNA-1 |
| chr3_1 | exon | 81686540 | 81686664 | 81686540 | ID=Msa0380130-mRNA-1:exon:20797;Parent=Msa0380130-mRNA-1 |
| chr3_1 | exon | 81686921 | 81687036 | 81686921 | ID=Msa0380130-mRNA-1:exon:20796;Parent=Msa0380130-mRNA-1 |
| chr3_1 | exon | 81687203 | 81687317 | 81687203 | ID=Msa0380130-mRNA-1:exon:20795;Parent=Msa0380130-mRNA-1 |
| chr3_1 | exon | 81688471 | 81688530 | 81688471 | ID=Msa0380130-mRNA-1:exon:20794;Parent=Msa0380130-mRNA-1 |
| chr3_1 | exon | 81688637 | 81688706 | 81688637 | ID=Msa0380130-mRNA-1:exon:20793;Parent=Msa0380130-mRNA-1 |
| chr3_1 | exon | 81688816 | 81689040 | 81688816 | ID=Msa0380130-mRNA-1:exon:20792;Parent=Msa0380130-mRNA-1 |
| chr3_1 | five_prime_UTR | 81688893 | 81689040 | 81688893 | ID=Msa0380130-mRNA-1:five_prime_utr;Parent=Msa0380130-mRNA-1 |
| chr3_1 | CDS | 81688816 | 81688892 | 81688816 | ID=Msa0380130-mRNA-1:cds;Parent=Msa0380130-mRNA-1 |
| chr3_1 | CDS | 81688637 | 81688706 | 81688637 | ID=Msa0380130-mRNA-1:cds;Parent=Msa0380130-mRNA-1 |
| chr3_1 | CDS | 81688471 | 81688530 | 81688471 | ID=Msa0380130-mRNA-1:cds;Parent=Msa0380130-mRNA-1 |
| chr3_1 | CDS | 81687203 | 81687317 | 81687203 | ID=Msa0380130-mRNA-1:cds;Parent=Msa0380130-mRNA-1 |
| chr3_1 | CDS | 81686921 | 81687036 | 81686921 | ID=Msa0380130-mRNA-1:cds;Parent=Msa0380130-mRNA-1 |
| chr3_1 | CDS | 81686540 | 81686664 | 81686540 | ID=Msa0380130-mRNA-1:cds;Parent=Msa0380130-mRNA-1 |
| chr3_1 | CDS | 81685710 | 81685833 | 81685710 | ID=Msa0380130-mRNA-1:cds;Parent=Msa0380130-mRNA-1 |
| chr3_1 | three_prime_UTR | 81685175 | 81685709 | 81685175 | ID=Msa0380130-mRNA-1:three_prime_utr;Parent=Msa0380130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
