Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429470 | XP_003602965.1 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 8.54e-166 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429470 | sp|Q6DFI2|TM147_XENLA | 37.278 | 169 | 98 | 4 | 1 | 166 | 1 | 164 | 1.36e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429470 | G7J5Q0 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 4.08e-166 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0141790 | Msa0429470 | 0.810633 | 1.046053e-50 | -8.615850e-47 |
| Msa0380130 | Msa0429470 | 0.994229 | 1.409996e-205 | -8.615850e-47 |
| Msa0429470 | Msa0429580 | 0.937809 | 1.891327e-98 | -8.615850e-47 |
| Msa0429470 | Msa0623450 | 0.994742 | 8.295881e-210 | -8.615850e-47 |
| Msa0429470 | Msa1269530 | 0.987903 | 5.734752e-172 | -8.615850e-47 |
| Msa0429470 | Msa1339200 | 0.806387 | 8.430153e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429470 | MtrunA17_Chr3g0133291 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 7.85e-170 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429470 | AT1G47640.1 | 87.225 | 227 | 29 | 0 | 1 | 227 | 1 | 227 | 1.82e-149 | 415 |
Find 70 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTCCATTCCATATCTT+TGG | 0.207710 | 3_2:-80902684 | Msa0429470:three_prime_UTR |
| TGCATAGGTTGGCTCCTCTT+TGG | 0.231286 | 3_2:-80904221 | Msa0429470:CDS |
| CCTAGAGGCTAATGCAAATT+TGG | 0.264750 | 3_2:-80904151 | Msa0429470:intron |
| TAATAAAATCCAGGGTGTTT+TGG | 0.297926 | 3_2:-80902479 | Msa0429470:three_prime_UTR |
| AACATCAATAAAACCTATTA+AGG | 0.298184 | 3_2:+80904513 | None:intergenic |
| GCTCCATTGTCTGCTTCTTT+TGG | 0.299649 | 3_2:-80902861 | Msa0429470:three_prime_UTR |
| GCATAGGTTGGCTCCTCTTT+GGG | 0.301668 | 3_2:-80904220 | Msa0429470:CDS |
| CCAGCACACAAGTATATAAT+AGG | 0.316254 | 3_2:+80903801 | None:intergenic |
| AGCTCAAAACCGACCACTTT+GGG | 0.322717 | 3_2:+80903011 | None:intergenic |
| TCTCTGCCAGCTTATTTGTT+TGG | 0.326986 | 3_2:-80905749 | Msa0429470:intron |
| GAGCATATCCCTCGCTGGAC+TGG | 0.334400 | 3_2:-80903868 | Msa0429470:CDS |
| TACATGTTACACACCTGATA+TGG | 0.335870 | 3_2:+80905688 | None:intergenic |
| AACTGTGCGATTCTCACTTT+CGG | 0.343965 | 3_2:-80906080 | Msa0429470:CDS |
| GGGTCTTGGGTTTATTCTTT+CGG | 0.344658 | 3_2:+80903829 | None:intergenic |
| AGATATTTCTGTGAGTCAAC+TGG | 0.359727 | 3_2:+80904467 | None:intergenic |
| AGCTATTTGAGACGTGGATT+GGG | 0.361113 | 3_2:-80903044 | Msa0429470:CDS |
| CTAGAGGATTAGAATTTACT+TGG | 0.367682 | 3_2:-80904191 | Msa0429470:CDS |
| CAGCTATTTGAGACGTGGAT+TGG | 0.383715 | 3_2:-80903045 | Msa0429470:CDS |
| CCAAATTTGCATTAGCCTCT+AGG | 0.391836 | 3_2:+80904151 | None:intergenic |
| GCTAAGATAAACCAAAGATA+TGG | 0.400423 | 3_2:+80902673 | None:intergenic |
| AGTAAAGACCTTGTGATAGA+TGG | 0.402554 | 3_2:+80903762 | None:intergenic |
| CCTATTATATACTTGTGTGC+TGG | 0.408006 | 3_2:-80903801 | Msa0429470:CDS |
| CTATTATATACTTGTGTGCT+GGG | 0.411762 | 3_2:-80903800 | Msa0429470:CDS |
| AGCATATCCCTCGCTGGACT+GGG | 0.422684 | 3_2:-80903867 | Msa0429470:CDS |
| TGATAGCTTTGATCCATATC+AGG | 0.429031 | 3_2:-80905701 | Msa0429470:intron |
| TATAATAGGAATGAGGGTCT+TGG | 0.441236 | 3_2:+80903815 | None:intergenic |
| ATAATAGGAATGAGGGTCTT+GGG | 0.442787 | 3_2:+80903816 | None:intergenic |
| AATCACAAGTTTCAAGCAGT+TGG | 0.445704 | 3_2:-80904439 | Msa0429470:CDS |
| CCTCTTTGGGTGGGTGCTAG+AGG | 0.451531 | 3_2:-80904207 | Msa0429470:CDS |
| AACAACTAATAATAAAATCC+AGG | 0.456732 | 3_2:-80902488 | Msa0429470:three_prime_UTR |
| GAGCTCAAAACCGACCACTT+TGG | 0.467128 | 3_2:+80903010 | None:intergenic |
| GCTCTTCACATCCTTGGTGA+TGG | 0.469782 | 3_2:-80902991 | Msa0429470:CDS |
| AAAGAGAAAGAGAAAGAGAA+AGG | 0.486114 | 3_2:-80906178 | Msa0429470:five_prime_UTR |
| AGGTTGGCTCCTCTTTGGGT+GGG | 0.487173 | 3_2:-80904216 | Msa0429470:CDS |
| AAGTTTCAAGCAGTTGGACT+TGG | 0.494155 | 3_2:-80904433 | Msa0429470:intron |
| TCTGTGAGTCAACTGGGTTA+AGG | 0.496836 | 3_2:+80904474 | None:intergenic |
| AGAGAAAGAGAAAGGTGAAG+TGG | 0.502932 | 3_2:-80906170 | Msa0429470:five_prime_UTR |
| ACTGGGTTAAGGCAAAATAA+AGG | 0.503580 | 3_2:+80904485 | None:intergenic |
| TAGGTTGGCTCCTCTTTGGG+TGG | 0.506863 | 3_2:-80904217 | Msa0429470:CDS |
| TACTCAGAAAATAGTTATGT+AGG | 0.518456 | 3_2:+80902891 | None:intergenic |
| GATAAACCAAAGATATGGAA+TGG | 0.524667 | 3_2:+80902678 | None:intergenic |
| TCTCGCTACAGCATTAGTAA+AGG | 0.526454 | 3_2:-80905867 | Msa0429470:intron |
| ACAAGTATATAATAGGAATG+AGG | 0.541413 | 3_2:+80903808 | None:intergenic |
| TTCTGCAGCTATTTGAGACG+TGG | 0.544622 | 3_2:-80903050 | Msa0429470:intron |
| TGATTCTGTACTGCATAGGT+TGG | 0.545086 | 3_2:-80904232 | Msa0429470:CDS |
| GATATTTCTGTGAGTCAACT+GGG | 0.551092 | 3_2:+80904468 | None:intergenic |
| GCGGAGTAGTAGACGGCGTG+AGG | 0.553841 | 3_2:+80906056 | None:intergenic |
| CTGCCAAAAGAAGCAGACAA+TGG | 0.556661 | 3_2:+80902858 | None:intergenic |
| CAAGTATATAATAGGAATGA+GGG | 0.557618 | 3_2:+80903809 | None:intergenic |
| TTGCTGATTCTGTACTGCAT+AGG | 0.570050 | 3_2:-80904236 | Msa0429470:CDS |
| TGGCATCTTCCCAAAGTGGT+CGG | 0.572570 | 3_2:-80903020 | Msa0429470:CDS |
| CCTCTAGCACCCACCCAAAG+AGG | 0.575616 | 3_2:+80904207 | None:intergenic |
| ACAACTAATAATAAAATCCA+GGG | 0.580652 | 3_2:-80902487 | Msa0429470:three_prime_UTR |
| TAGAGGATTAGAATTTACTT+GGG | 0.589952 | 3_2:-80904190 | Msa0429470:CDS |
| AGACCTTGTGATAGATGGCA+TGG | 0.593404 | 3_2:+80903767 | None:intergenic |
| TAGCAGCTTTCTCAAGCTGA+AGG | 0.600485 | 3_2:+80902930 | None:intergenic |
| ATTTGAGACGTGGATTGGGG+TGG | 0.610413 | 3_2:-80903040 | Msa0429470:CDS |
| CAAAGATCCCAGTCCAGCGA+GGG | 0.611270 | 3_2:+80903860 | None:intergenic |
| GCTATTTGAGACGTGGATTG+GGG | 0.613941 | 3_2:-80903043 | Msa0429470:CDS |
| CTGGACTGGGATCTTTGATG+TGG | 0.618650 | 3_2:-80903854 | Msa0429470:CDS |
| AGGTGTGGCGGAGTAGTAGA+CGG | 0.628616 | 3_2:+80906049 | None:intergenic |
| CTACCATGCCATCTATCACA+AGG | 0.634671 | 3_2:-80903770 | Msa0429470:intron |
| AAAAGATCAGAATCAGATGA+CGG | 0.640988 | 3_2:-80906117 | Msa0429470:exon |
| CGGAGTAGTAGACGGCGTGA+GGG | 0.654035 | 3_2:+80906057 | None:intergenic |
| AGATCTGAGTATGATACACT+CGG | 0.676121 | 3_2:-80905917 | Msa0429470:CDS |
| GGGGTGGCATCTTCCCAAAG+TGG | 0.678666 | 3_2:-80903024 | Msa0429470:CDS |
| AAGTACTTACAAAGGTGTGG+CGG | 0.688668 | 3_2:+80906037 | None:intergenic |
| ACTTATAAAAGCCATCACCA+AGG | 0.688750 | 3_2:+80902980 | None:intergenic |
| TCAAAGATCCCAGTCCAGCG+AGG | 0.696797 | 3_2:+80903859 | None:intergenic |
| TGTAGCGAGATAAACAACTG+CGG | 0.776602 | 3_2:+80905880 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTATCATAATAAAT+AGG | + | chr3_2:80903822-80903841 | None:intergenic | 10.0% |
| !!! | GTTTTTCCTAAATTATAATA+AGG | - | chr3_2:80903021-80903040 | Msa0429470:CDS | 15.0% |
| !!! | AACTAATTTAAAGGTATTTT+GGG | + | chr3_2:80903219-80903238 | None:intergenic | 15.0% |
| !!! | AAACTAATTTAAAGGTATTT+TGG | + | chr3_2:80903220-80903239 | None:intergenic | 15.0% |
| !! | TGAGATAATTACTATAATTA+CGG | - | chr3_2:80903253-80903272 | Msa0429470:intron | 15.0% |
| !! | TTTATCATAATAAATAGGAA+TGG | + | chr3_2:80903817-80903836 | None:intergenic | 15.0% |
| !! | CTATAAGAATATATGAAAAT+TGG | + | chr3_2:80904050-80904069 | None:intergenic | 15.0% |
| !! | ACAACAAACATAATAAAATA+TGG | + | chr3_2:80904077-80904096 | None:intergenic | 15.0% |
| !!! | TTTTATAATCCAACATTAAT+TGG | - | chr3_2:80904630-80904649 | Msa0429470:intron | 15.0% |
| !! | TACCACAAAAAAAAATTAAT+AGG | + | chr3_2:80905906-80905925 | None:intergenic | 15.0% |
| !! | TATTAGTTAGAGAGTTAATT+AGG | + | chr3_2:80902860-80902879 | None:intergenic | 20.0% |
| !! | ACTACACCTTATTATAATTT+AGG | + | chr3_2:80903030-80903049 | None:intergenic | 20.0% |
| !! | CCATTAAGAAACTAATTTAA+AGG | + | chr3_2:80903228-80903247 | None:intergenic | 20.0% |
| !!! | CCTTTAAATTAGTTTCTTAA+TGG | - | chr3_2:80903225-80903244 | Msa0429470:intron | 20.0% |
| !! | GAGATAATTACTATAATTAC+GGG | - | chr3_2:80903254-80903273 | Msa0429470:intron | 20.0% |
| !! | AAATTATCTCCTAATTACAT+TGG | + | chr3_2:80903419-80903438 | None:intergenic | 20.0% |
| !! | TAAATAAACAAAAGATAGCA+CGG | + | chr3_2:80903671-80903690 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGTTTGTTGTC+TGG | - | chr3_2:80904078-80904097 | Msa0429470:intron | 20.0% |
| !! | AACATCAATAAAACCTATTA+AGG | + | chr3_2:80904145-80904164 | None:intergenic | 20.0% |
| !!! | TTTTAAATTTATGTGCATCT+TGG | - | chr3_2:80904285-80904304 | Msa0429470:intron | 20.0% |
| !! | TGTAAAAAATTCAAAACTCT+AGG | + | chr3_2:80904568-80904587 | None:intergenic | 20.0% |
| !!! | TTTTTACAATCCACATTAAT+TGG | - | chr3_2:80904580-80904599 | Msa0429470:intron | 20.0% |
| !!! | AATGATTTAAAACAAGAAGA+GGG | - | chr3_2:80905099-80905118 | Msa0429470:intron | 20.0% |
| !!! | TGAATTTTAAATAAACTGCA+TGG | + | chr3_2:80905826-80905845 | None:intergenic | 20.0% |
| !!! | TACTTTTGTTTCAAAACAAT+TGG | - | chr3_2:80906009-80906028 | Msa0429470:intron | 20.0% |
| !!! | TTGTTTTCTAATTGTATCTT+TGG | - | chr3_2:80906061-80906080 | Msa0429470:CDS | 20.0% |
| !! | AACAACTAATAATAAAATCC+AGG | - | chr3_2:80906167-80906186 | Msa0429470:five_prime_UTR | 20.0% |
| !! | ACAACTAATAATAAAATCCA+GGG | - | chr3_2:80906168-80906187 | Msa0429470:five_prime_UTR | 20.0% |
| !!! | TTTTGTAGTATATTTACTCA+AGG | - | chr3_2:80906233-80906252 | Msa0429470:five_prime_UTR | 20.0% |
| !!! | GAATGAAAAAGTACTTACAA+AGG | + | chr3_2:80902629-80902648 | None:intergenic | 25.0% |
| ! | TTAGGTTTGAAGATGTAAAA+AGG | + | chr3_2:80902842-80902861 | None:intergenic | 25.0% |
| ! | TTCTTAAGTGTGATAAATGA+TGG | - | chr3_2:80903437-80903456 | Msa0429470:intron | 25.0% |
| !! | GATTTTCTTATAACTGTTCA+TGG | - | chr3_2:80903482-80903501 | Msa0429470:intron | 25.0% |
| ! | TTAAATCATTATCTCTAGCA+GGG | + | chr3_2:80903543-80903562 | None:intergenic | 25.0% |
| ! | TTTAAATCATTATCTCTAGC+AGG | + | chr3_2:80903544-80903563 | None:intergenic | 25.0% |
| !! | TAGAGATAATGATTTAAAGC+AGG | - | chr3_2:80903546-80903565 | Msa0429470:intron | 25.0% |
| !! | AGAGATAATGATTTAAAGCA+GGG | - | chr3_2:80903547-80903566 | Msa0429470:intron | 25.0% |
| ! | AAATAAACAAAAGATAGCAC+GGG | + | chr3_2:80903670-80903689 | None:intergenic | 25.0% |
| !!! | CGTTTGGTATATTTTGTTTA+TGG | - | chr3_2:80903736-80903755 | Msa0429470:intron | 25.0% |
| ! | ACTTAAATTTCAGCATAAGT+AGG | - | chr3_2:80903838-80903857 | Msa0429470:CDS | 25.0% |
| !!! | CTGTTTTTGAGAAATTACAA+TGG | - | chr3_2:80904004-80904023 | Msa0429470:intron | 25.0% |
| !! | TTGTCTGGAATAATAACAAA+TGG | - | chr3_2:80904093-80904112 | Msa0429470:intron | 25.0% |
| !!! | TGTTTTTCAGGAATTTTTGA+AGG | - | chr3_2:80904119-80904138 | Msa0429470:intron | 25.0% |
| ! | TAGAGGATTAGAATTTACTT+GGG | - | chr3_2:80904465-80904484 | Msa0429470:CDS | 25.0% |
| ! | TGCATTATTCCAATTAATGT+TGG | + | chr3_2:80904642-80904661 | None:intergenic | 25.0% |
| ! | CAAGTATATAATAGGAATGA+GGG | + | chr3_2:80904849-80904868 | None:intergenic | 25.0% |
| ! | ACAAGTATATAATAGGAATG+AGG | + | chr3_2:80904850-80904869 | None:intergenic | 25.0% |
| !!! | ACTGATGTCATTTTAATTTG+AGG | - | chr3_2:80904961-80904980 | Msa0429470:intron | 25.0% |
| !!! | TTCTTGTTTTAAATCATTGC+AGG | + | chr3_2:80905097-80905116 | None:intergenic | 25.0% |
| !! | CAATGATTTAAAACAAGAAG+AGG | - | chr3_2:80905098-80905117 | Msa0429470:intron | 25.0% |
| ! | TTGTACTAAATAACATATCG+TGG | + | chr3_2:80905299-80905318 | None:intergenic | 25.0% |
| ! | TACTCAGAAAATAGTTATGT+AGG | + | chr3_2:80905767-80905786 | None:intergenic | 25.0% |
| !!! | CGCCTATTAATTTTTTTTTG+TGG | - | chr3_2:80905901-80905920 | Msa0429470:CDS | 25.0% |
| !!! | TTTTTTTTGTGGTAGAATGT+TGG | - | chr3_2:80905912-80905931 | Msa0429470:CDS | 25.0% |
| AAAGAGAAAGAGAAAGAGAA+AGG | - | chr3_2:80902477-80902496 | Msa0429470:three_prime_UTR | 30.0% | |
| AAAAGATCAGAATCAGATGA+CGG | - | chr3_2:80902538-80902557 | Msa0429470:three_prime_UTR | 30.0% | |
| !! | AAAAAGTACTTACAAAGGTG+TGG | + | chr3_2:80902624-80902643 | None:intergenic | 30.0% |
| ! | AGTTTTCATGATGCGAAATT+GGG | + | chr3_2:80902688-80902707 | None:intergenic | 30.0% |
| ! | TAGTTTTCATGATGCGAAAT+TGG | + | chr3_2:80902689-80902708 | None:intergenic | 30.0% |
| TCCTTAATAAGTGTGAAAGT+AGG | - | chr3_2:80903339-80903358 | Msa0429470:intron | 30.0% | |
| ACCTACTTTCACACTTATTA+AGG | + | chr3_2:80903343-80903362 | None:intergenic | 30.0% | |
| TATCTCCTAATTACATTGGA+GGG | + | chr3_2:80903415-80903434 | None:intergenic | 30.0% | |
| TTATCTCCTAATTACATTGG+AGG | + | chr3_2:80903416-80903435 | None:intergenic | 30.0% | |
| TGGATACAAGAGAATATTTG+TGG | - | chr3_2:80903457-80903476 | Msa0429470:intron | 30.0% | |
| ATACAAGAGAATATTTGTGG+AGG | - | chr3_2:80903460-80903479 | Msa0429470:intron | 30.0% | |
| ! | TAATGATTTAAAGCAGGGAT+AGG | - | chr3_2:80903552-80903571 | Msa0429470:intron | 30.0% |
| ! | AATGATTTAAAGCAGGGATA+GGG | - | chr3_2:80903553-80903572 | Msa0429470:intron | 30.0% |
| !!! | TAGCCAATCATTTTGAGTTT+GGG | - | chr3_2:80903588-80903607 | Msa0429470:intron | 30.0% |
| AATCCCAAACTCAAAATGAT+TGG | + | chr3_2:80903594-80903613 | None:intergenic | 30.0% | |
| !!! | ATCATTTTGAGTTTGGGATT+TGG | - | chr3_2:80903594-80903613 | Msa0429470:intron | 30.0% |
| !!! | TCATTTTGAGTTTGGGATTT+GGG | - | chr3_2:80903595-80903614 | Msa0429470:intron | 30.0% |
| CAAAATATACCAAACGCTTA+AGG | + | chr3_2:80903732-80903751 | None:intergenic | 30.0% | |
| CATAATAAATAGGAATGGCA+AGG | + | chr3_2:80903812-80903831 | None:intergenic | 30.0% | |
| TAAATTTCAGCATAAGTAGG+CGG | - | chr3_2:80903841-80903860 | Msa0429470:CDS | 30.0% | |
| !!! | AACAAATGGCTTTGTTTTTC+AGG | - | chr3_2:80904107-80904126 | Msa0429470:intron | 30.0% |
| !! | GAATTTTTGAAGGCCTTAAT+AGG | - | chr3_2:80904129-80904148 | Msa0429470:intron | 30.0% |
| !!! | ATAGGTTTTATTGATGTTGC+TGG | - | chr3_2:80904147-80904166 | Msa0429470:intron | 30.0% |
| CTAGAGGATTAGAATTTACT+TGG | - | chr3_2:80904464-80904483 | Msa0429470:CDS | 30.0% | |
| ! | CTGTGTTATTCCAATTAATG+TGG | + | chr3_2:80904593-80904612 | None:intergenic | 30.0% |
| AGTTTGTCAATGTTGTTATG+TGG | - | chr3_2:80904664-80904683 | Msa0429470:intron | 30.0% | |
| TCAATGTTGTTATGTGGTAT+AGG | - | chr3_2:80904670-80904689 | Msa0429470:intron | 30.0% | |
| CTATTATATACTTGTGTGCT+GGG | - | chr3_2:80904855-80904874 | Msa0429470:intron | 30.0% | |
| CTATATAACAACACTCATTG+AGG | + | chr3_2:80905228-80905247 | None:intergenic | 30.0% | |
| GTGTTTCAAATAGATTACAG+TGG | - | chr3_2:80905320-80905339 | Msa0429470:intron | 30.0% | |
| ! | TGATAAAAGACCTGTCTTTT+TGG | - | chr3_2:80905481-80905500 | Msa0429470:intron | 30.0% |
| ! | AATCACTGGTCTATTAGATA+TGG | - | chr3_2:80905508-80905527 | Msa0429470:intron | 30.0% |
| GATAAACCAAAGATATGGAA+TGG | + | chr3_2:80905980-80905999 | None:intergenic | 30.0% | |
| GCTAAGATAAACCAAAGATA+TGG | + | chr3_2:80905985-80906004 | None:intergenic | 30.0% | |
| !!! | TTAAGATGACTGTTTTAACG+AGG | - | chr3_2:80906090-80906109 | Msa0429470:CDS | 30.0% |
| !! | TAATAAAATCCAGGGTGTTT+TGG | - | chr3_2:80906176-80906195 | Msa0429470:five_prime_UTR | 30.0% |
| ! | TTTTCATGATGCGAAATTGG+GGG | + | chr3_2:80902686-80902705 | None:intergenic | 35.0% |
| ! | GTTTTCATGATGCGAAATTG+GGG | + | chr3_2:80902687-80902706 | None:intergenic | 35.0% |
| AGATCTGAGTATGATACACT+CGG | - | chr3_2:80902738-80902757 | Msa0429470:three_prime_UTR | 35.0% | |
| AAGTAGCCAAACAAATAAGC+TGG | + | chr3_2:80902915-80902934 | None:intergenic | 35.0% | |
| !!! | TTGTTTGGCTACTTTTCTCA+AGG | - | chr3_2:80902921-80902940 | Msa0429470:three_prime_UTR | 35.0% |
| !! | TGATAGCTTTGATCCATATC+AGG | - | chr3_2:80902954-80902973 | Msa0429470:CDS | 35.0% |
| TACATGTTACACACCTGATA+TGG | + | chr3_2:80902970-80902989 | None:intergenic | 35.0% | |
| AGATACCCTCCAATGTAATT+AGG | - | chr3_2:80903407-80903426 | Msa0429470:intron | 35.0% | |
| TTATAACTGTTCATGGTAGC+TGG | - | chr3_2:80903489-80903508 | Msa0429470:intron | 35.0% | |
| TATAACTGTTCATGGTAGCT+GGG | - | chr3_2:80903490-80903509 | Msa0429470:intron | 35.0% | |
| !!! | GTAGCCAATCATTTTGAGTT+TGG | - | chr3_2:80903587-80903606 | Msa0429470:intron | 35.0% |
| AGATACTGCAGAATCTTGAA+GGG | + | chr3_2:80903644-80903663 | None:intergenic | 35.0% | |
| ! | CATCTAAAACCTTAAGCGTT+TGG | - | chr3_2:80903720-80903739 | Msa0429470:intron | 35.0% |
| TATCAATGCATAAAGCCCAA+AGG | - | chr3_2:80903874-80903893 | Msa0429470:CDS | 35.0% | |
| ATCAATGCATAAAGCCCAAA+GGG | - | chr3_2:80903875-80903894 | Msa0429470:CDS | 35.0% | |
| ! | GCCTAAAAGCTTAAGCTTTT+GGG | - | chr3_2:80903945-80903964 | Msa0429470:intron | 35.0% |
| ! | TCCCAAAAGCTTAAGCTTTT+AGG | + | chr3_2:80903949-80903968 | None:intergenic | 35.0% |
| ACTGGGTTAAGGCAAAATAA+AGG | + | chr3_2:80904173-80904192 | None:intergenic | 35.0% | |
| ! | GATATTTCTGTGAGTCAACT+GGG | + | chr3_2:80904190-80904209 | None:intergenic | 35.0% |
| ! | AGATATTTCTGTGAGTCAAC+TGG | + | chr3_2:80904191-80904210 | None:intergenic | 35.0% |
| AATCACAAGTTTCAAGCAGT+TGG | - | chr3_2:80904216-80904235 | Msa0429470:CDS | 35.0% | |
| AATAGCAAAAGAAACACCAG+AGG | + | chr3_2:80904344-80904363 | None:intergenic | 35.0% | |
| CTTCTCTAACTTTCACTTGT+CGG | - | chr3_2:80904367-80904386 | Msa0429470:intron | 35.0% | |
| TTTCTGCACTTTATCTGTAC+AGG | - | chr3_2:80904760-80904779 | Msa0429470:intron | 35.0% | |
| ATAATAGGAATGAGGGTCTT+GGG | + | chr3_2:80904842-80904861 | None:intergenic | 35.0% | |
| TATAATAGGAATGAGGGTCT+TGG | + | chr3_2:80904843-80904862 | None:intergenic | 35.0% | |
| CCAGCACACAAGTATATAAT+AGG | + | chr3_2:80904857-80904876 | None:intergenic | 35.0% | |
| CCTATTATATACTTGTGTGC+TGG | - | chr3_2:80904854-80904873 | Msa0429470:intron | 35.0% | |
| AGTAAAGACCTTGTGATAGA+TGG | + | chr3_2:80904896-80904915 | None:intergenic | 35.0% | |
| ! | TCTAGCACTCACTCTTTTAT+TGG | - | chr3_2:80905016-80905035 | Msa0429470:intron | 35.0% |
| TGAGAAGAAAAATCCCAGTT+AGG | + | chr3_2:80905166-80905185 | None:intergenic | 35.0% | |
| GTGATTCTATCCAAAAAGAC+AGG | + | chr3_2:80905494-80905513 | None:intergenic | 35.0% | |
| ! | GTCTTTTTGGATAGAATCAC+TGG | - | chr3_2:80905494-80905513 | Msa0429470:intron | 35.0% |
| AAACACTACGCTACAGTAAA+TGG | + | chr3_2:80905572-80905591 | None:intergenic | 35.0% | |
| ACTTATAAAAGCCATCACCA+AGG | + | chr3_2:80905678-80905697 | None:intergenic | 35.0% | |
| !!! | TGGTGATGGCTTTTATAAGT+TGG | - | chr3_2:80905678-80905697 | Msa0429470:intron | 35.0% |
| TTCTCTCCATTCCATATCTT+TGG | - | chr3_2:80905971-80905990 | Msa0429470:intron | 35.0% | |
| AGAGAAAGAGAAAGGTGAAG+TGG | - | chr3_2:80902485-80902504 | Msa0429470:three_prime_UTR | 40.0% | |
| AACTGTGCGATTCTCACTTT+CGG | - | chr3_2:80902575-80902594 | Msa0429470:three_prime_UTR | 40.0% | |
| ! | AAGTACTTACAAAGGTGTGG+CGG | + | chr3_2:80902621-80902640 | None:intergenic | 40.0% |
| TGTAGCGAGATAAACAACTG+CGG | + | chr3_2:80902778-80902797 | None:intergenic | 40.0% | |
| TCTCGCTACAGCATTAGTAA+AGG | - | chr3_2:80902788-80902807 | Msa0429470:three_prime_UTR | 40.0% | |
| ACAAATAAGCTGGCAGAGAA+AGG | + | chr3_2:80902905-80902924 | None:intergenic | 40.0% | |
| TCTCTGCCAGCTTATTTGTT+TGG | - | chr3_2:80902906-80902925 | Msa0429470:three_prime_UTR | 40.0% | |
| ! | AGCTCTAATTCCTTCCATTC+TGG | - | chr3_2:80903054-80903073 | Msa0429470:intron | 40.0% |
| TCTAATTCCTTCCATTCTGG+AGG | - | chr3_2:80903057-80903076 | Msa0429470:intron | 40.0% | |
| CTAATTCCTTCCATTCTGGA+GGG | - | chr3_2:80903058-80903077 | Msa0429470:intron | 40.0% | |
| CACAAGAGTGAAGCATGAAA+TGG | + | chr3_2:80903121-80903140 | None:intergenic | 40.0% | |
| ATAACTGTTCATGGTAGCTG+GGG | - | chr3_2:80903491-80903510 | Msa0429470:intron | 40.0% | |
| GATACTGCAGAATCTTGAAG+GGG | + | chr3_2:80903643-80903662 | None:intergenic | 40.0% | |
| GAGATACTGCAGAATCTTGA+AGG | + | chr3_2:80903645-80903664 | None:intergenic | 40.0% | |
| ! | CGCCTAAAAGCTTAAGCTTT+TGG | - | chr3_2:80903944-80903963 | Msa0429470:intron | 40.0% |
| !!! | GCTTAAGCTTTTGGGATAGA+TGG | - | chr3_2:80903953-80903972 | Msa0429470:intron | 40.0% |
| !!! | CTTTTGGGATAGATGGTTCA+TGG | - | chr3_2:80903960-80903979 | Msa0429470:intron | 40.0% |
| AAGTTTCAAGCAGTTGGACT+TGG | - | chr3_2:80904222-80904241 | Msa0429470:CDS | 40.0% | |
| TGATGTTCTCCTTCCTTGAT+CGG | - | chr3_2:80904318-80904337 | Msa0429470:intron | 40.0% | |
| !! | TTGCTGATTCTGTACTGCAT+AGG | - | chr3_2:80904419-80904438 | Msa0429470:intron | 40.0% |
| TGATTCTGTACTGCATAGGT+TGG | - | chr3_2:80904423-80904442 | Msa0429470:intron | 40.0% | |
| !! | TACTTGGGAGTACATTTTGC+AGG | - | chr3_2:80904480-80904499 | Msa0429470:CDS | 40.0% |
| !! | ACTTGGGAGTACATTTTGCA+GGG | - | chr3_2:80904481-80904500 | Msa0429470:CDS | 40.0% |
| ! | CCAAATTTGCATTAGCCTCT+AGG | + | chr3_2:80904507-80904526 | None:intergenic | 40.0% |
| CCTAGAGGCTAATGCAAATT+TGG | - | chr3_2:80904504-80904523 | Msa0429470:CDS | 40.0% | |
| !! | TTGGTACGTTCTTTAGCTCT+CGG | - | chr3_2:80904523-80904542 | Msa0429470:CDS | 40.0% |
| GGGTCTTGGGTTTATTCTTT+CGG | + | chr3_2:80904829-80904848 | None:intergenic | 40.0% | |
| ! | GCACTCACTCTTTTATTGGA+TGG | - | chr3_2:80905020-80905039 | Msa0429470:intron | 40.0% |
| CAAATAGAACCCACACAATG+TGG | + | chr3_2:80905063-80905082 | None:intergenic | 40.0% | |
| TGTTGCTAACACTACCTAAC+TGG | - | chr3_2:80905149-80905168 | Msa0429470:intron | 40.0% | |
| GTTGCTAACACTACCTAACT+GGG | - | chr3_2:80905150-80905169 | Msa0429470:intron | 40.0% | |
| GCTATAGCGCAATTGTTTAG+TGG | - | chr3_2:80905250-80905269 | Msa0429470:intron | 40.0% | |
| GCTATAGCATTGTAGCATAG+TGG | - | chr3_2:80905344-80905363 | Msa0429470:intron | 40.0% | |
| GGAGAAAGAGAGGTAAAAGT+TGG | + | chr3_2:80905433-80905452 | None:intergenic | 40.0% | |
| GGTCTATTAGATATGGTGCT+TGG | - | chr3_2:80905515-80905534 | Msa0429470:intron | 40.0% | |
| ! | AGCTATTTGAGACGTGGATT+GGG | - | chr3_2:80905611-80905630 | Msa0429470:intron | 40.0% |
| ! | TTTTGAGCTCTTCACATCCT+TGG | - | chr3_2:80905658-80905677 | Msa0429470:intron | 40.0% |
| CAAAAAACACCAAAACACCC+TGG | + | chr3_2:80906188-80906207 | None:intergenic | 40.0% | |
| ATCATTGCCATCTGCTCTCT+TGG | + | chr3_2:80903387-80903406 | None:intergenic | 45.0% | |
| TCTGTGAGTCAACTGGGTTA+AGG | + | chr3_2:80904184-80904203 | None:intergenic | 45.0% | |
| CTACCATGCCATCTATCACA+AGG | - | chr3_2:80904885-80904904 | Msa0429470:intron | 45.0% | |
| AGACCTTGTGATAGATGGCA+TGG | + | chr3_2:80904891-80904910 | None:intergenic | 45.0% | |
| TATGTCCCACCACATTGTGT+GGG | - | chr3_2:80905051-80905070 | Msa0429470:intron | 45.0% | |
| TAGAACCCACACAATGTGGT+GGG | + | chr3_2:80905059-80905078 | None:intergenic | 45.0% | |
| ATAGAACCCACACAATGTGG+TGG | + | chr3_2:80905060-80905079 | None:intergenic | 45.0% | |
| ! | CTCATTGAGGCTTTTGTGCT+TGG | + | chr3_2:80905215-80905234 | None:intergenic | 45.0% |
| GAAGCCAGTGTTGTCAATAG+CGG | + | chr3_2:80905399-80905418 | None:intergenic | 45.0% | |
| TATCTACGCAGCAACAGACT+CGG | + | chr3_2:80905454-80905473 | None:intergenic | 45.0% | |
| ! | TTCTGCAGCTATTTGAGACG+TGG | - | chr3_2:80905605-80905624 | Msa0429470:intron | 45.0% |
| ! | CAGCTATTTGAGACGTGGAT+TGG | - | chr3_2:80905610-80905629 | Msa0429470:intron | 45.0% |
| ! | GCTATTTGAGACGTGGATTG+GGG | - | chr3_2:80905612-80905631 | Msa0429470:intron | 45.0% |
| AGCTCAAAACCGACCACTTT+GGG | + | chr3_2:80905647-80905666 | None:intergenic | 45.0% | |
| TAGCAGCTTTCTCAAGCTGA+AGG | + | chr3_2:80905728-80905747 | None:intergenic | 45.0% | |
| ! | GCTCCATTGTCTGCTTCTTT+TGG | - | chr3_2:80905794-80905813 | Msa0429470:intron | 45.0% |
| CTGCCAAAAGAAGCAGACAA+TGG | + | chr3_2:80905800-80905819 | None:intergenic | 45.0% | |
| ! | TTCCTTCCATTCTGGAGGGA+CGG | - | chr3_2:80903062-80903081 | Msa0429470:intron | 50.0% |
| GACGGAGTTCTTGTCTGTGT+AGG | - | chr3_2:80903080-80903099 | Msa0429470:intron | 50.0% | |
| TTGAGTGCCAAGAGAGCAGA+TGG | - | chr3_2:80903377-80903396 | Msa0429470:intron | 50.0% | |
| TTCATGGTAGCTGGGGATAG+AGG | - | chr3_2:80903498-80903517 | Msa0429470:intron | 50.0% | |
| CACTGACACGAGATCCCTTT+GGG | + | chr3_2:80903892-80903911 | None:intergenic | 50.0% | |
| TCACTGACACGAGATCCCTT+TGG | + | chr3_2:80903893-80903912 | None:intergenic | 50.0% | |
| !! | TGTCGGTGTCACTTCTCTTG+TGG | - | chr3_2:80904384-80904403 | Msa0429470:intron | 50.0% |
| ! | TGCATAGGTTGGCTCCTCTT+TGG | - | chr3_2:80904434-80904453 | Msa0429470:CDS | 50.0% |
| ! | GCATAGGTTGGCTCCTCTTT+GGG | - | chr3_2:80904435-80904454 | Msa0429470:CDS | 50.0% |
| ! | GTACATTTTGCAGGGCCTAG+AGG | - | chr3_2:80904489-80904508 | Msa0429470:CDS | 50.0% |
| !! | GTTTTGAGCATATCCCTCGC+TGG | - | chr3_2:80904782-80904801 | Msa0429470:intron | 50.0% |
| ! | CTGGACTGGGATCTTTGATG+TGG | - | chr3_2:80904801-80904820 | Msa0429470:intron | 50.0% |
| GTATGTCCCACCACATTGTG+TGG | - | chr3_2:80905050-80905069 | Msa0429470:intron | 50.0% | |
| !! | GTGTTGTCAATAGCGGATCG+CGG | + | chr3_2:80905392-80905411 | None:intergenic | 50.0% |
| CGATCCGCTATTGACAACAC+TGG | - | chr3_2:80905392-80905411 | Msa0429470:intron | 50.0% | |
| CAACAGACTCGGAGAAAGAG+AGG | + | chr3_2:80905443-80905462 | None:intergenic | 50.0% | |
| !! | ATTTGAGACGTGGATTGGGG+TGG | - | chr3_2:80905615-80905634 | Msa0429470:intron | 50.0% |
| TGGCATCTTCCCAAAGTGGT+CGG | - | chr3_2:80905635-80905654 | Msa0429470:intron | 50.0% | |
| GAGCTCAAAACCGACCACTT+TGG | + | chr3_2:80905648-80905667 | None:intergenic | 50.0% | |
| GCTCTTCACATCCTTGGTGA+TGG | - | chr3_2:80905664-80905683 | Msa0429470:intron | 50.0% | |
| ! | AGGTGTGGCGGAGTAGTAGA+CGG | + | chr3_2:80902609-80902628 | None:intergenic | 55.0% |
| AGAACTCCGTCCCTCCAGAA+TGG | + | chr3_2:80903071-80903090 | None:intergenic | 55.0% | |
| TAGCTGGGGATAGAGGAGTG+AGG | - | chr3_2:80903505-80903524 | Msa0429470:intron | 55.0% | |
| TGGGGATAGAGGAGTGAGGA+AGG | - | chr3_2:80903509-80903528 | Msa0429470:intron | 55.0% | |
| ! | GAGTTTGGGATTTGGGCCAC+AGG | - | chr3_2:80903602-80903621 | Msa0429470:intron | 55.0% |
| TTGGGATTTGGGCCACAGGA+TGG | - | chr3_2:80903606-80903625 | Msa0429470:intron | 55.0% | |
| TGGGATTTGGGCCACAGGAT+GGG | - | chr3_2:80903607-80903626 | Msa0429470:intron | 55.0% | |
| GTCTACTTCCTCCCATCCTG+TGG | + | chr3_2:80903621-80903640 | None:intergenic | 55.0% | |
| GAAACACCAGAGGCCGATCA+AGG | + | chr3_2:80904334-80904353 | None:intergenic | 55.0% | |
| !! | GGTGTCACTTCTCTTGTGGC+AGG | - | chr3_2:80904388-80904407 | Msa0429470:intron | 55.0% |
| TCACTTCTCTTGTGGCAGGC+TGG | - | chr3_2:80904392-80904411 | Msa0429470:intron | 55.0% | |
| CACTTCTCTTGTGGCAGGCT+GGG | - | chr3_2:80904393-80904412 | Msa0429470:intron | 55.0% | |
| ! | TAGGTTGGCTCCTCTTTGGG+TGG | - | chr3_2:80904438-80904457 | Msa0429470:CDS | 55.0% |
| ! | AGGTTGGCTCCTCTTTGGGT+GGG | - | chr3_2:80904439-80904458 | Msa0429470:CDS | 55.0% |
| AGCATATCCCTCGCTGGACT+GGG | - | chr3_2:80904788-80904807 | Msa0429470:intron | 55.0% | |
| CAAAGATCCCAGTCCAGCGA+GGG | + | chr3_2:80904798-80904817 | None:intergenic | 55.0% | |
| TCAAAGATCCCAGTCCAGCG+AGG | + | chr3_2:80904799-80904818 | None:intergenic | 55.0% | |
| CGGAGTAGTAGACGGCGTGA+GGG | + | chr3_2:80902601-80902620 | None:intergenic | 60.0% | |
| CTCCGTCCCTCCAGAATGGA+AGG | + | chr3_2:80903067-80903086 | None:intergenic | 60.0% | |
| GATTTGGGCCACAGGATGGG+AGG | - | chr3_2:80903610-80903629 | Msa0429470:intron | 60.0% | |
| CTCCTTCCTTGATCGGCCTC+TGG | - | chr3_2:80904325-80904344 | Msa0429470:intron | 60.0% | |
| CACCAGAGGCCGATCAAGGA+AGG | + | chr3_2:80904330-80904349 | None:intergenic | 60.0% | |
| CCTCTAGCACCCACCCAAAG+AGG | + | chr3_2:80904451-80904470 | None:intergenic | 60.0% | |
| CCTCTTTGGGTGGGTGCTAG+AGG | - | chr3_2:80904448-80904467 | Msa0429470:CDS | 60.0% | |
| GAGCATATCCCTCGCTGGAC+TGG | - | chr3_2:80904787-80904806 | Msa0429470:intron | 60.0% | |
| GGGGTGGCATCTTCCCAAAG+TGG | - | chr3_2:80905631-80905650 | Msa0429470:intron | 60.0% | |
| GCGGAGTAGTAGACGGCGTG+AGG | + | chr3_2:80902602-80902621 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 80902406 | 80906271 | 80902406 | ID=Msa0429470;Name=Msa0429470 |
| chr3_2 | mRNA | 80902406 | 80906271 | 80902406 | ID=Msa0429470-mRNA-1;Parent=Msa0429470;Name=Msa0429470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=148|1|1|1|1|1|7|535|228 |
| chr3_2 | exon | 80902406 | 80903064 | 80902406 | ID=Msa0429470-mRNA-1:exon:22278;Parent=Msa0429470-mRNA-1 |
| chr3_2 | exon | 80903771 | 80903895 | 80903771 | ID=Msa0429470-mRNA-1:exon:22277;Parent=Msa0429470-mRNA-1 |
| chr3_2 | exon | 80904152 | 80904267 | 80904152 | ID=Msa0429470-mRNA-1:exon:22276;Parent=Msa0429470-mRNA-1 |
| chr3_2 | exon | 80904434 | 80904548 | 80904434 | ID=Msa0429470-mRNA-1:exon:22275;Parent=Msa0429470-mRNA-1 |
| chr3_2 | exon | 80905702 | 80905761 | 80905702 | ID=Msa0429470-mRNA-1:exon:22274;Parent=Msa0429470-mRNA-1 |
| chr3_2 | exon | 80905868 | 80905937 | 80905868 | ID=Msa0429470-mRNA-1:exon:22273;Parent=Msa0429470-mRNA-1 |
| chr3_2 | exon | 80906047 | 80906271 | 80906047 | ID=Msa0429470-mRNA-1:exon:22272;Parent=Msa0429470-mRNA-1 |
| chr3_2 | five_prime_UTR | 80906124 | 80906271 | 80906124 | ID=Msa0429470-mRNA-1:five_prime_utr;Parent=Msa0429470-mRNA-1 |
| chr3_2 | CDS | 80906047 | 80906123 | 80906047 | ID=Msa0429470-mRNA-1:cds;Parent=Msa0429470-mRNA-1 |
| chr3_2 | CDS | 80905868 | 80905937 | 80905868 | ID=Msa0429470-mRNA-1:cds;Parent=Msa0429470-mRNA-1 |
| chr3_2 | CDS | 80905702 | 80905761 | 80905702 | ID=Msa0429470-mRNA-1:cds;Parent=Msa0429470-mRNA-1 |
| chr3_2 | CDS | 80904434 | 80904548 | 80904434 | ID=Msa0429470-mRNA-1:cds;Parent=Msa0429470-mRNA-1 |
| chr3_2 | CDS | 80904152 | 80904267 | 80904152 | ID=Msa0429470-mRNA-1:cds;Parent=Msa0429470-mRNA-1 |
| chr3_2 | CDS | 80903771 | 80903895 | 80903771 | ID=Msa0429470-mRNA-1:cds;Parent=Msa0429470-mRNA-1 |
| chr3_2 | CDS | 80902941 | 80903064 | 80902941 | ID=Msa0429470-mRNA-1:cds;Parent=Msa0429470-mRNA-1 |
| chr3_2 | three_prime_UTR | 80902406 | 80902940 | 80902406 | ID=Msa0429470-mRNA-1:three_prime_utr;Parent=Msa0429470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
