Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429580 | XP_003602965.1 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 8.54e-166 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429580 | sp|Q6DFI2|TM147_XENLA | 37.278 | 169 | 98 | 4 | 1 | 166 | 1 | 164 | 1.36e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429580 | G7J5Q0 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 4.08e-166 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0141790 | Msa0429580 | 0.913056 | 9.572393e-84 | -8.615850e-47 |
| Msa0380130 | Msa0429580 | 0.934865 | 2.081279e-96 | -8.615850e-47 |
| Msa0429470 | Msa0429580 | 0.937809 | 1.891327e-98 | -8.615850e-47 |
| Msa0429580 | Msa0623450 | 0.935434 | 8.534645e-97 | -8.615850e-47 |
| Msa0429580 | Msa1269530 | 0.936201 | 2.534803e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429580 | MtrunA17_Chr3g0133291 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 7.85e-170 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429580 | AT1G47640.1 | 87.225 | 227 | 29 | 0 | 1 | 227 | 1 | 227 | 1.82e-149 | 415 |
Find 70 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTCCATTCCATATCTT+TGG | 0.207710 | 3_2:+81041060 | Msa0429580:three_prime_UTR |
| TGCATAGGTTGGCTCCTCTT+TGG | 0.231286 | 3_2:+81039523 | Msa0429580:CDS |
| CCTAGAGGCTAATGCAAATT+TGG | 0.264750 | 3_2:+81039593 | Msa0429580:CDS |
| TAATAAAATCCAGGGTGTTT+TGG | 0.297926 | 3_2:+81041265 | Msa0429580:three_prime_UTR |
| AACATCAATAAAACCTATTA+AGG | 0.298184 | 3_2:-81039231 | None:intergenic |
| GCTCCATTGTCTGCTTCTTT+TGG | 0.299649 | 3_2:+81040883 | Msa0429580:three_prime_UTR |
| GCATAGGTTGGCTCCTCTTT+GGG | 0.301668 | 3_2:+81039524 | Msa0429580:CDS |
| CCAGCACACAAGTATATAAT+AGG | 0.316254 | 3_2:-81039943 | None:intergenic |
| AGCTCAAAACCGACCACTTT+GGG | 0.322717 | 3_2:-81040733 | None:intergenic |
| TCTCTGCCAGCTTATTTGTT+TGG | 0.326986 | 3_2:+81037995 | Msa0429580:intron |
| GAGCATATCCCTCGCTGGAC+TGG | 0.334400 | 3_2:+81039876 | Msa0429580:CDS |
| TACATGTTACACACCTGATA+TGG | 0.335870 | 3_2:-81038056 | None:intergenic |
| AACTGTGCGATTCTCACTTT+CGG | 0.343965 | 3_2:+81037664 | Msa0429580:CDS |
| GGGTCTTGGGTTTATTCTTT+CGG | 0.344658 | 3_2:-81039915 | None:intergenic |
| AGATATTTCTGTGAGTCAAC+TGG | 0.359727 | 3_2:-81039277 | None:intergenic |
| AGCTATTTGAGACGTGGATT+GGG | 0.361113 | 3_2:+81040700 | Msa0429580:intron |
| CTAGAGGATTAGAATTTACT+TGG | 0.367682 | 3_2:+81039553 | Msa0429580:CDS |
| CAGCTATTTGAGACGTGGAT+TGG | 0.383715 | 3_2:+81040699 | Msa0429580:intron |
| CCAAATTTGCATTAGCCTCT+AGG | 0.391836 | 3_2:-81039593 | None:intergenic |
| GCTAAGATAAACCAAAGATA+TGG | 0.400423 | 3_2:-81041071 | None:intergenic |
| AGTAAAGACCTTGTGATAGA+TGG | 0.402554 | 3_2:-81039982 | None:intergenic |
| CCTATTATATACTTGTGTGC+TGG | 0.408006 | 3_2:+81039943 | Msa0429580:CDS |
| CTATTATATACTTGTGTGCT+GGG | 0.411762 | 3_2:+81039944 | Msa0429580:CDS |
| AGCATATCCCTCGCTGGACT+GGG | 0.422684 | 3_2:+81039877 | Msa0429580:CDS |
| TGATAGCTTTGATCCATATC+AGG | 0.429031 | 3_2:+81038043 | Msa0429580:CDS |
| TATAATAGGAATGAGGGTCT+TGG | 0.441236 | 3_2:-81039929 | None:intergenic |
| ATAATAGGAATGAGGGTCTT+GGG | 0.442787 | 3_2:-81039928 | None:intergenic |
| AATCACAAGTTTCAAGCAGT+TGG | 0.445704 | 3_2:+81039305 | Msa0429580:CDS |
| CCTCTTTGGGTGGGTGCTAG+AGG | 0.451531 | 3_2:+81039537 | Msa0429580:CDS |
| AACAACTAATAATAAAATCC+AGG | 0.456732 | 3_2:+81041256 | Msa0429580:three_prime_UTR |
| GAGCTCAAAACCGACCACTT+TGG | 0.467128 | 3_2:-81040734 | None:intergenic |
| GCTCTTCACATCCTTGGTGA+TGG | 0.469782 | 3_2:+81040753 | Msa0429580:CDS |
| AAAGAGAAAGAGAAAGAGAA+AGG | 0.486114 | 3_2:+81037566 | Msa0429580:five_prime_UTR |
| AGGTTGGCTCCTCTTTGGGT+GGG | 0.487173 | 3_2:+81039528 | Msa0429580:CDS |
| AAGTTTCAAGCAGTTGGACT+TGG | 0.494155 | 3_2:+81039311 | Msa0429580:CDS |
| TCTGTGAGTCAACTGGGTTA+AGG | 0.496836 | 3_2:-81039270 | None:intergenic |
| AGAGAAAGAGAAAGGTGAAG+TGG | 0.502932 | 3_2:+81037574 | Msa0429580:five_prime_UTR |
| ACTGGGTTAAGGCAAAATAA+AGG | 0.503580 | 3_2:-81039259 | None:intergenic |
| TAGGTTGGCTCCTCTTTGGG+TGG | 0.506863 | 3_2:+81039527 | Msa0429580:CDS |
| TACTCAGAAAATAGTTATGT+AGG | 0.518456 | 3_2:-81040853 | None:intergenic |
| GATAAACCAAAGATATGGAA+TGG | 0.524667 | 3_2:-81041066 | None:intergenic |
| TCTCGCTACAGCATTAGTAA+AGG | 0.526454 | 3_2:+81037877 | Msa0429580:CDS |
| ACAAGTATATAATAGGAATG+AGG | 0.541413 | 3_2:-81039936 | None:intergenic |
| TTCTGCAGCTATTTGAGACG+TGG | 0.544622 | 3_2:+81040694 | Msa0429580:intron |
| TGATTCTGTACTGCATAGGT+TGG | 0.545086 | 3_2:+81039512 | Msa0429580:CDS |
| GATATTTCTGTGAGTCAACT+GGG | 0.551092 | 3_2:-81039276 | None:intergenic |
| GCGGAGTAGTAGACGGCGTG+AGG | 0.553841 | 3_2:-81037688 | None:intergenic |
| CTGCCAAAAGAAGCAGACAA+TGG | 0.556661 | 3_2:-81040886 | None:intergenic |
| CAAGTATATAATAGGAATGA+GGG | 0.557618 | 3_2:-81039935 | None:intergenic |
| TTGCTGATTCTGTACTGCAT+AGG | 0.570050 | 3_2:+81039508 | Msa0429580:CDS |
| TGGCATCTTCCCAAAGTGGT+CGG | 0.572570 | 3_2:+81040724 | Msa0429580:CDS |
| CCTCTAGCACCCACCCAAAG+AGG | 0.575616 | 3_2:-81039537 | None:intergenic |
| ACAACTAATAATAAAATCCA+GGG | 0.580652 | 3_2:+81041257 | Msa0429580:three_prime_UTR |
| TAGAGGATTAGAATTTACTT+GGG | 0.589952 | 3_2:+81039554 | Msa0429580:CDS |
| AGACCTTGTGATAGATGGCA+TGG | 0.593404 | 3_2:-81039977 | None:intergenic |
| TAGCAGCTTTCTCAAGCTGA+AGG | 0.600485 | 3_2:-81040814 | None:intergenic |
| ATTTGAGACGTGGATTGGGG+TGG | 0.610413 | 3_2:+81040704 | Msa0429580:CDS |
| CAAAGATCCCAGTCCAGCGA+GGG | 0.611270 | 3_2:-81039884 | None:intergenic |
| GCTATTTGAGACGTGGATTG+GGG | 0.613941 | 3_2:+81040701 | Msa0429580:intron |
| CTGGACTGGGATCTTTGATG+TGG | 0.618650 | 3_2:+81039890 | Msa0429580:CDS |
| AGGTGTGGCGGAGTAGTAGA+CGG | 0.628616 | 3_2:-81037695 | None:intergenic |
| CTACCATGCCATCTATCACA+AGG | 0.634671 | 3_2:+81039974 | Msa0429580:CDS |
| AAAAGATCAGAATCAGATGA+CGG | 0.640988 | 3_2:+81037627 | Msa0429580:exon |
| CGGAGTAGTAGACGGCGTGA+GGG | 0.654035 | 3_2:-81037687 | None:intergenic |
| AGATCTGAGTATGATACACT+CGG | 0.676121 | 3_2:+81037827 | Msa0429580:intron |
| GGGGTGGCATCTTCCCAAAG+TGG | 0.678666 | 3_2:+81040720 | Msa0429580:CDS |
| AAGTACTTACAAAGGTGTGG+CGG | 0.688668 | 3_2:-81037707 | None:intergenic |
| ACTTATAAAAGCCATCACCA+AGG | 0.688750 | 3_2:-81040764 | None:intergenic |
| TCAAAGATCCCAGTCCAGCG+AGG | 0.696797 | 3_2:-81039885 | None:intergenic |
| TGTAGCGAGATAAACAACTG+CGG | 0.776602 | 3_2:-81037864 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTATCATAATAAAT+AGG | - | chr3_2:81038911-81038930 | None:intergenic | 10.0% |
| !!! | GTTTTTCCTAAATTATAATA+AGG | + | chr3_2:81038110-81038129 | Msa0429580:intron | 15.0% |
| !!! | AACTAATTTAAAGGTATTTT+GGG | - | chr3_2:81038308-81038327 | None:intergenic | 15.0% |
| !!! | AAACTAATTTAAAGGTATTT+TGG | - | chr3_2:81038309-81038328 | None:intergenic | 15.0% |
| !! | TGAGATAATTACTATAATTA+CGG | + | chr3_2:81038342-81038361 | Msa0429580:intron | 15.0% |
| !! | TTTATCATAATAAATAGGAA+TGG | - | chr3_2:81038906-81038925 | None:intergenic | 15.0% |
| !! | CTATAAGAATATATGAAAAT+TGG | - | chr3_2:81039139-81039158 | None:intergenic | 15.0% |
| !! | ACAACAAACATAATAAAATA+TGG | - | chr3_2:81039166-81039185 | None:intergenic | 15.0% |
| !!! | TTTTATAATCCAACATTAAT+TGG | + | chr3_2:81039719-81039738 | Msa0429580:intron | 15.0% |
| !! | TACCACAAAAAAAAATTAAT+AGG | - | chr3_2:81040995-81041014 | None:intergenic | 15.0% |
| !! | TATTAGTTAGAGAGTTAATT+AGG | - | chr3_2:81037949-81037968 | None:intergenic | 20.0% |
| !! | ACTACACCTTATTATAATTT+AGG | - | chr3_2:81038119-81038138 | None:intergenic | 20.0% |
| !! | CCATTAAGAAACTAATTTAA+AGG | - | chr3_2:81038317-81038336 | None:intergenic | 20.0% |
| !!! | CCTTTAAATTAGTTTCTTAA+TGG | + | chr3_2:81038314-81038333 | Msa0429580:intron | 20.0% |
| !! | GAGATAATTACTATAATTAC+GGG | + | chr3_2:81038343-81038362 | Msa0429580:intron | 20.0% |
| !! | AAATTATCTCCTAATTACAT+TGG | - | chr3_2:81038508-81038527 | None:intergenic | 20.0% |
| !! | TAAATAAACAAAAGATAGCA+CGG | - | chr3_2:81038760-81038779 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGTTTGTTGTC+TGG | + | chr3_2:81039167-81039186 | Msa0429580:intron | 20.0% |
| !! | AACATCAATAAAACCTATTA+AGG | - | chr3_2:81039234-81039253 | None:intergenic | 20.0% |
| !!! | TTTTAAATTTATGTGCATCT+TGG | + | chr3_2:81039374-81039393 | Msa0429580:intron | 20.0% |
| !! | TGTAAAAAATTCAAAACTCT+AGG | - | chr3_2:81039657-81039676 | None:intergenic | 20.0% |
| !!! | TTTTTACAATCCACATTAAT+TGG | + | chr3_2:81039669-81039688 | Msa0429580:intron | 20.0% |
| !!! | AATGATTTAAAACAAGAAGA+GGG | + | chr3_2:81040188-81040207 | Msa0429580:intron | 20.0% |
| !!! | TGAATTTTAAATAAACTGCA+TGG | - | chr3_2:81040915-81040934 | None:intergenic | 20.0% |
| !!! | TACTTTTGTTTCAAAACAAT+TGG | + | chr3_2:81041098-81041117 | Msa0429580:three_prime_UTR | 20.0% |
| !!! | TTGTTTTCTAATTGTATCTT+TGG | + | chr3_2:81041150-81041169 | Msa0429580:three_prime_UTR | 20.0% |
| !! | AACAACTAATAATAAAATCC+AGG | + | chr3_2:81041256-81041275 | Msa0429580:three_prime_UTR | 20.0% |
| !! | ACAACTAATAATAAAATCCA+GGG | + | chr3_2:81041257-81041276 | Msa0429580:three_prime_UTR | 20.0% |
| !!! | TTTTGTAGTATATTTACTCA+AGG | + | chr3_2:81041322-81041341 | Msa0429580:three_prime_UTR | 20.0% |
| !!! | GAATGAAAAAGTACTTACAA+AGG | - | chr3_2:81037718-81037737 | None:intergenic | 25.0% |
| ! | TTAGGTTTGAAGATGTAAAA+AGG | - | chr3_2:81037931-81037950 | None:intergenic | 25.0% |
| ! | TTCTTAAGTGTGATAAATGA+TGG | + | chr3_2:81038526-81038545 | Msa0429580:intron | 25.0% |
| !! | GATTTTCTTATAACTGTTCA+TGG | + | chr3_2:81038571-81038590 | Msa0429580:intron | 25.0% |
| ! | TTAAATCATTATCTCTAGCA+GGG | - | chr3_2:81038632-81038651 | None:intergenic | 25.0% |
| ! | TTTAAATCATTATCTCTAGC+AGG | - | chr3_2:81038633-81038652 | None:intergenic | 25.0% |
| !! | TAGAGATAATGATTTAAAGC+AGG | + | chr3_2:81038635-81038654 | Msa0429580:intron | 25.0% |
| !! | AGAGATAATGATTTAAAGCA+GGG | + | chr3_2:81038636-81038655 | Msa0429580:intron | 25.0% |
| ! | AAATAAACAAAAGATAGCAC+GGG | - | chr3_2:81038759-81038778 | None:intergenic | 25.0% |
| !!! | CGTTTGGTATATTTTGTTTA+TGG | + | chr3_2:81038825-81038844 | Msa0429580:intron | 25.0% |
| ! | ACTTAAATTTCAGCATAAGT+AGG | + | chr3_2:81038927-81038946 | Msa0429580:intron | 25.0% |
| !!! | CTGTTTTTGAGAAATTACAA+TGG | + | chr3_2:81039093-81039112 | Msa0429580:intron | 25.0% |
| !! | TTGTCTGGAATAATAACAAA+TGG | + | chr3_2:81039182-81039201 | Msa0429580:intron | 25.0% |
| !!! | TGTTTTTCAGGAATTTTTGA+AGG | + | chr3_2:81039208-81039227 | Msa0429580:intron | 25.0% |
| ! | TAGAGGATTAGAATTTACTT+GGG | + | chr3_2:81039554-81039573 | Msa0429580:CDS | 25.0% |
| ! | TGGATTATTCCAATTAATGT+TGG | - | chr3_2:81039731-81039750 | None:intergenic | 25.0% |
| ! | CAAGTATATAATAGGAATGA+GGG | - | chr3_2:81039938-81039957 | None:intergenic | 25.0% |
| ! | ACAAGTATATAATAGGAATG+AGG | - | chr3_2:81039939-81039958 | None:intergenic | 25.0% |
| !!! | ACTGATGTCATTTTAATTTG+AGG | + | chr3_2:81040050-81040069 | Msa0429580:intron | 25.0% |
| !!! | TTCTTGTTTTAAATCATTGC+AGG | - | chr3_2:81040186-81040205 | None:intergenic | 25.0% |
| !! | CAATGATTTAAAACAAGAAG+AGG | + | chr3_2:81040187-81040206 | Msa0429580:intron | 25.0% |
| ! | TTGTACTAAATAACATATCG+TGG | - | chr3_2:81040388-81040407 | None:intergenic | 25.0% |
| ! | TACTCAGAAAATAGTTATGT+AGG | - | chr3_2:81040856-81040875 | None:intergenic | 25.0% |
| !!! | CGCCTATTAATTTTTTTTTG+TGG | + | chr3_2:81040990-81041009 | Msa0429580:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTGTGGTAGAATGT+TGG | + | chr3_2:81041001-81041020 | Msa0429580:three_prime_UTR | 25.0% |
| AAAGAGAAAGAGAAAGAGAA+AGG | + | chr3_2:81037566-81037585 | Msa0429580:five_prime_UTR | 30.0% | |
| AAAAGATCAGAATCAGATGA+CGG | + | chr3_2:81037627-81037646 | Msa0429580:exon | 30.0% | |
| !! | AAAAAGTACTTACAAAGGTG+TGG | - | chr3_2:81037713-81037732 | None:intergenic | 30.0% |
| ! | AGTTTTCATGATGCGAAATT+GGG | - | chr3_2:81037777-81037796 | None:intergenic | 30.0% |
| ! | TAGTTTTCATGATGCGAAAT+TGG | - | chr3_2:81037778-81037797 | None:intergenic | 30.0% |
| TCCTTAATAAGTGTGAAAGT+AGG | + | chr3_2:81038428-81038447 | Msa0429580:intron | 30.0% | |
| ACCTACTTTCACACTTATTA+AGG | - | chr3_2:81038432-81038451 | None:intergenic | 30.0% | |
| TATCTCCTAATTACATTGGA+GGG | - | chr3_2:81038504-81038523 | None:intergenic | 30.0% | |
| TTATCTCCTAATTACATTGG+AGG | - | chr3_2:81038505-81038524 | None:intergenic | 30.0% | |
| TGGATACAAGAGAATATTTG+TGG | + | chr3_2:81038546-81038565 | Msa0429580:intron | 30.0% | |
| ATACAAGAGAATATTTGTGG+AGG | + | chr3_2:81038549-81038568 | Msa0429580:intron | 30.0% | |
| ! | TAATGATTTAAAGCAGGGAT+AGG | + | chr3_2:81038641-81038660 | Msa0429580:intron | 30.0% |
| ! | AATGATTTAAAGCAGGGATA+GGG | + | chr3_2:81038642-81038661 | Msa0429580:intron | 30.0% |
| !!! | TAGCCAATCATTTTGAGTTT+GGG | + | chr3_2:81038677-81038696 | Msa0429580:intron | 30.0% |
| AATCCCAAACTCAAAATGAT+TGG | - | chr3_2:81038683-81038702 | None:intergenic | 30.0% | |
| !!! | ATCATTTTGAGTTTGGGATT+TGG | + | chr3_2:81038683-81038702 | Msa0429580:intron | 30.0% |
| !!! | TCATTTTGAGTTTGGGATTT+GGG | + | chr3_2:81038684-81038703 | Msa0429580:intron | 30.0% |
| CAAAATATACCAAACGCTTA+AGG | - | chr3_2:81038821-81038840 | None:intergenic | 30.0% | |
| CATAATAAATAGGAATGGCA+AGG | - | chr3_2:81038901-81038920 | None:intergenic | 30.0% | |
| TAAATTTCAGCATAAGTAGG+CGG | + | chr3_2:81038930-81038949 | Msa0429580:intron | 30.0% | |
| !!! | AACAAATGGCTTTGTTTTTC+AGG | + | chr3_2:81039196-81039215 | Msa0429580:intron | 30.0% |
| !! | GAATTTTTGAAGGCCTTAAT+AGG | + | chr3_2:81039218-81039237 | Msa0429580:CDS | 30.0% |
| !!! | ATAGGTTTTATTGATGTTGC+TGG | + | chr3_2:81039236-81039255 | Msa0429580:CDS | 30.0% |
| CTAGAGGATTAGAATTTACT+TGG | + | chr3_2:81039553-81039572 | Msa0429580:CDS | 30.0% | |
| ! | CTGTGTTATTCCAATTAATG+TGG | - | chr3_2:81039682-81039701 | None:intergenic | 30.0% |
| AGTTTGTCAATGTTGTTATG+TGG | + | chr3_2:81039753-81039772 | Msa0429580:intron | 30.0% | |
| TCAATGTTGTTATGTGGTAT+AGG | + | chr3_2:81039759-81039778 | Msa0429580:intron | 30.0% | |
| CTATTATATACTTGTGTGCT+GGG | + | chr3_2:81039944-81039963 | Msa0429580:CDS | 30.0% | |
| CTATATAACAACACTCATTG+AGG | - | chr3_2:81040317-81040336 | None:intergenic | 30.0% | |
| GTGTTTCAAATAGATTACAG+TGG | + | chr3_2:81040409-81040428 | Msa0429580:intron | 30.0% | |
| ! | TGATAAAAGACCTGTCTTTT+TGG | + | chr3_2:81040570-81040589 | Msa0429580:intron | 30.0% |
| ! | AATCACTGGTCTATTAGATA+TGG | + | chr3_2:81040597-81040616 | Msa0429580:intron | 30.0% |
| GATAAACCAAAGATATGGAA+TGG | - | chr3_2:81041069-81041088 | None:intergenic | 30.0% | |
| GCTAAGATAAACCAAAGATA+TGG | - | chr3_2:81041074-81041093 | None:intergenic | 30.0% | |
| !!! | TTAAGATGACTGTTTTAACG+AGG | + | chr3_2:81041179-81041198 | Msa0429580:three_prime_UTR | 30.0% |
| !! | TAATAAAATCCAGGGTGTTT+TGG | + | chr3_2:81041265-81041284 | Msa0429580:three_prime_UTR | 30.0% |
| ! | TTTTCATGATGCGAAATTGG+GGG | - | chr3_2:81037775-81037794 | None:intergenic | 35.0% |
| ! | GTTTTCATGATGCGAAATTG+GGG | - | chr3_2:81037776-81037795 | None:intergenic | 35.0% |
| AGATCTGAGTATGATACACT+CGG | + | chr3_2:81037827-81037846 | Msa0429580:intron | 35.0% | |
| AAGTAGCCAAACAAATAAGC+TGG | - | chr3_2:81038004-81038023 | None:intergenic | 35.0% | |
| !!! | TTGTTTGGCTACTTTTCTCA+AGG | + | chr3_2:81038010-81038029 | Msa0429580:CDS | 35.0% |
| !! | TGATAGCTTTGATCCATATC+AGG | + | chr3_2:81038043-81038062 | Msa0429580:CDS | 35.0% |
| TACATGTTACACACCTGATA+TGG | - | chr3_2:81038059-81038078 | None:intergenic | 35.0% | |
| AGATACCCTCCAATGTAATT+AGG | + | chr3_2:81038496-81038515 | Msa0429580:intron | 35.0% | |
| TTATAACTGTTCATGGTAGC+TGG | + | chr3_2:81038578-81038597 | Msa0429580:intron | 35.0% | |
| TATAACTGTTCATGGTAGCT+GGG | + | chr3_2:81038579-81038598 | Msa0429580:intron | 35.0% | |
| !!! | GTAGCCAATCATTTTGAGTT+TGG | + | chr3_2:81038676-81038695 | Msa0429580:intron | 35.0% |
| AGATACTGCAGAATCTTGAA+GGG | - | chr3_2:81038733-81038752 | None:intergenic | 35.0% | |
| ! | CATCTAAAACCTTAAGCGTT+TGG | + | chr3_2:81038809-81038828 | Msa0429580:intron | 35.0% |
| TATCAATGCATAAAGCCCAA+AGG | + | chr3_2:81038963-81038982 | Msa0429580:intron | 35.0% | |
| ATCAATGCATAAAGCCCAAA+GGG | + | chr3_2:81038964-81038983 | Msa0429580:intron | 35.0% | |
| ! | GCCTAAAAGCTTAAGCTTTT+GGG | + | chr3_2:81039034-81039053 | Msa0429580:intron | 35.0% |
| ! | TCCCAAAAGCTTAAGCTTTT+AGG | - | chr3_2:81039038-81039057 | None:intergenic | 35.0% |
| ACTGGGTTAAGGCAAAATAA+AGG | - | chr3_2:81039262-81039281 | None:intergenic | 35.0% | |
| ! | GATATTTCTGTGAGTCAACT+GGG | - | chr3_2:81039279-81039298 | None:intergenic | 35.0% |
| ! | AGATATTTCTGTGAGTCAAC+TGG | - | chr3_2:81039280-81039299 | None:intergenic | 35.0% |
| AATCACAAGTTTCAAGCAGT+TGG | + | chr3_2:81039305-81039324 | Msa0429580:CDS | 35.0% | |
| AATAGCAAAAGAAACACCAG+AGG | - | chr3_2:81039433-81039452 | None:intergenic | 35.0% | |
| CTTCTCTAACTTTCACTTGT+CGG | + | chr3_2:81039456-81039475 | Msa0429580:intron | 35.0% | |
| TAACAACATTGACAAACTGC+TGG | - | chr3_2:81039751-81039770 | None:intergenic | 35.0% | |
| TTTCTGCACTTTATCTGTAC+AGG | + | chr3_2:81039849-81039868 | Msa0429580:intron | 35.0% | |
| ATAATAGGAATGAGGGTCTT+GGG | - | chr3_2:81039931-81039950 | None:intergenic | 35.0% | |
| TATAATAGGAATGAGGGTCT+TGG | - | chr3_2:81039932-81039951 | None:intergenic | 35.0% | |
| CCAGCACACAAGTATATAAT+AGG | - | chr3_2:81039946-81039965 | None:intergenic | 35.0% | |
| CCTATTATATACTTGTGTGC+TGG | + | chr3_2:81039943-81039962 | Msa0429580:CDS | 35.0% | |
| AGTAAAGACCTTGTGATAGA+TGG | - | chr3_2:81039985-81040004 | None:intergenic | 35.0% | |
| ! | TCTAGCACTCACTCTTTTAT+TGG | + | chr3_2:81040105-81040124 | Msa0429580:intron | 35.0% |
| TGAGAAGAAAAATCCCAGTT+AGG | - | chr3_2:81040255-81040274 | None:intergenic | 35.0% | |
| GTGATTCTATCCAAAAAGAC+AGG | - | chr3_2:81040583-81040602 | None:intergenic | 35.0% | |
| ! | GTCTTTTTGGATAGAATCAC+TGG | + | chr3_2:81040583-81040602 | Msa0429580:intron | 35.0% |
| AAACACTACGCTACAGTAAA+TGG | - | chr3_2:81040661-81040680 | None:intergenic | 35.0% | |
| ACTTATAAAAGCCATCACCA+AGG | - | chr3_2:81040767-81040786 | None:intergenic | 35.0% | |
| !!! | TGGTGATGGCTTTTATAAGT+TGG | + | chr3_2:81040767-81040786 | Msa0429580:CDS | 35.0% |
| TTCTCTCCATTCCATATCTT+TGG | + | chr3_2:81041060-81041079 | Msa0429580:three_prime_UTR | 35.0% | |
| AGAGAAAGAGAAAGGTGAAG+TGG | + | chr3_2:81037574-81037593 | Msa0429580:five_prime_UTR | 40.0% | |
| AACTGTGCGATTCTCACTTT+CGG | + | chr3_2:81037664-81037683 | Msa0429580:CDS | 40.0% | |
| ! | AAGTACTTACAAAGGTGTGG+CGG | - | chr3_2:81037710-81037729 | None:intergenic | 40.0% |
| TGTAGCGAGATAAACAACTG+CGG | - | chr3_2:81037867-81037886 | None:intergenic | 40.0% | |
| TCTCGCTACAGCATTAGTAA+AGG | + | chr3_2:81037877-81037896 | Msa0429580:CDS | 40.0% | |
| ACAAATAAGCTGGCAGAGAA+AGG | - | chr3_2:81037994-81038013 | None:intergenic | 40.0% | |
| TCTCTGCCAGCTTATTTGTT+TGG | + | chr3_2:81037995-81038014 | Msa0429580:intron | 40.0% | |
| ! | AGCTCTAATTCCTTCCATTC+TGG | + | chr3_2:81038143-81038162 | Msa0429580:intron | 40.0% |
| TCTAATTCCTTCCATTCTGG+AGG | + | chr3_2:81038146-81038165 | Msa0429580:intron | 40.0% | |
| CTAATTCCTTCCATTCTGGA+GGG | + | chr3_2:81038147-81038166 | Msa0429580:intron | 40.0% | |
| CACAAGAGTGAAGCATGAAA+TGG | - | chr3_2:81038210-81038229 | None:intergenic | 40.0% | |
| ATAACTGTTCATGGTAGCTG+GGG | + | chr3_2:81038580-81038599 | Msa0429580:intron | 40.0% | |
| GATACTGCAGAATCTTGAAG+GGG | - | chr3_2:81038732-81038751 | None:intergenic | 40.0% | |
| GAGATACTGCAGAATCTTGA+AGG | - | chr3_2:81038734-81038753 | None:intergenic | 40.0% | |
| ! | CGCCTAAAAGCTTAAGCTTT+TGG | + | chr3_2:81039033-81039052 | Msa0429580:intron | 40.0% |
| !!! | GCTTAAGCTTTTGGGATAGA+TGG | + | chr3_2:81039042-81039061 | Msa0429580:intron | 40.0% |
| !!! | CTTTTGGGATAGATGGTTCA+TGG | + | chr3_2:81039049-81039068 | Msa0429580:intron | 40.0% |
| AAGTTTCAAGCAGTTGGACT+TGG | + | chr3_2:81039311-81039330 | Msa0429580:CDS | 40.0% | |
| TGATGTTCTCCTTCCTTGAT+CGG | + | chr3_2:81039407-81039426 | Msa0429580:intron | 40.0% | |
| !! | TTGCTGATTCTGTACTGCAT+AGG | + | chr3_2:81039508-81039527 | Msa0429580:CDS | 40.0% |
| TGATTCTGTACTGCATAGGT+TGG | + | chr3_2:81039512-81039531 | Msa0429580:CDS | 40.0% | |
| !! | TACTTGGGAGTACATTTTGC+AGG | + | chr3_2:81039569-81039588 | Msa0429580:CDS | 40.0% |
| !! | ACTTGGGAGTACATTTTGCA+GGG | + | chr3_2:81039570-81039589 | Msa0429580:CDS | 40.0% |
| ! | CCAAATTTGCATTAGCCTCT+AGG | - | chr3_2:81039596-81039615 | None:intergenic | 40.0% |
| CCTAGAGGCTAATGCAAATT+TGG | + | chr3_2:81039593-81039612 | Msa0429580:CDS | 40.0% | |
| !! | TTGGTACGTTCTTTAGCTCT+CGG | + | chr3_2:81039612-81039631 | Msa0429580:intron | 40.0% |
| GGGTCTTGGGTTTATTCTTT+CGG | - | chr3_2:81039918-81039937 | None:intergenic | 40.0% | |
| ! | GCACTCACTCTTTTATTGGA+TGG | + | chr3_2:81040109-81040128 | Msa0429580:intron | 40.0% |
| CAAATAGAACCCACACAATG+TGG | - | chr3_2:81040152-81040171 | None:intergenic | 40.0% | |
| TGTTGCTAACACTACCTAAC+TGG | + | chr3_2:81040238-81040257 | Msa0429580:intron | 40.0% | |
| GTTGCTAACACTACCTAACT+GGG | + | chr3_2:81040239-81040258 | Msa0429580:intron | 40.0% | |
| GCTATAGCGCAATTGTTTAG+TGG | + | chr3_2:81040339-81040358 | Msa0429580:intron | 40.0% | |
| GCTATAGCATTGTAGCATAG+TGG | + | chr3_2:81040433-81040452 | Msa0429580:intron | 40.0% | |
| GGAGAAAGAGAGGTAAAAGT+TGG | - | chr3_2:81040522-81040541 | None:intergenic | 40.0% | |
| GGTCTATTAGATATGGTGCT+TGG | + | chr3_2:81040604-81040623 | Msa0429580:intron | 40.0% | |
| ! | AGCTATTTGAGACGTGGATT+GGG | + | chr3_2:81040700-81040719 | Msa0429580:intron | 40.0% |
| ! | TTTTGAGCTCTTCACATCCT+TGG | + | chr3_2:81040747-81040766 | Msa0429580:CDS | 40.0% |
| CAAAAAACACCAAAACACCC+TGG | - | chr3_2:81041277-81041296 | None:intergenic | 40.0% | |
| ATCATTGCCATCTGCTCTCT+TGG | - | chr3_2:81038476-81038495 | None:intergenic | 45.0% | |
| TCTGTGAGTCAACTGGGTTA+AGG | - | chr3_2:81039273-81039292 | None:intergenic | 45.0% | |
| CTACCATGCCATCTATCACA+AGG | + | chr3_2:81039974-81039993 | Msa0429580:CDS | 45.0% | |
| AGACCTTGTGATAGATGGCA+TGG | - | chr3_2:81039980-81039999 | None:intergenic | 45.0% | |
| TATGTCCCACCACATTGTGT+GGG | + | chr3_2:81040140-81040159 | Msa0429580:intron | 45.0% | |
| TAGAACCCACACAATGTGGT+GGG | - | chr3_2:81040148-81040167 | None:intergenic | 45.0% | |
| ATAGAACCCACACAATGTGG+TGG | - | chr3_2:81040149-81040168 | None:intergenic | 45.0% | |
| ! | CTCATTGAGGCTTTTGTGCT+TGG | - | chr3_2:81040304-81040323 | None:intergenic | 45.0% |
| GAAGCCAGTGTTGTCAATAG+CGG | - | chr3_2:81040488-81040507 | None:intergenic | 45.0% | |
| TATCTACGCAGCAACAGACT+CGG | - | chr3_2:81040543-81040562 | None:intergenic | 45.0% | |
| ! | TTCTGCAGCTATTTGAGACG+TGG | + | chr3_2:81040694-81040713 | Msa0429580:intron | 45.0% |
| ! | CAGCTATTTGAGACGTGGAT+TGG | + | chr3_2:81040699-81040718 | Msa0429580:intron | 45.0% |
| ! | GCTATTTGAGACGTGGATTG+GGG | + | chr3_2:81040701-81040720 | Msa0429580:intron | 45.0% |
| AGCTCAAAACCGACCACTTT+GGG | - | chr3_2:81040736-81040755 | None:intergenic | 45.0% | |
| TAGCAGCTTTCTCAAGCTGA+AGG | - | chr3_2:81040817-81040836 | None:intergenic | 45.0% | |
| ! | GCTCCATTGTCTGCTTCTTT+TGG | + | chr3_2:81040883-81040902 | Msa0429580:three_prime_UTR | 45.0% |
| CTGCCAAAAGAAGCAGACAA+TGG | - | chr3_2:81040889-81040908 | None:intergenic | 45.0% | |
| ! | TTCCTTCCATTCTGGAGGGA+CGG | + | chr3_2:81038151-81038170 | Msa0429580:intron | 50.0% |
| GACGGAGTTCTTGTCTGTGT+AGG | + | chr3_2:81038169-81038188 | Msa0429580:intron | 50.0% | |
| TTGAGTGCCAAGAGAGCAGA+TGG | + | chr3_2:81038466-81038485 | Msa0429580:intron | 50.0% | |
| TTCATGGTAGCTGGGGATAG+AGG | + | chr3_2:81038587-81038606 | Msa0429580:intron | 50.0% | |
| CACTGACACGAGATCCCTTT+GGG | - | chr3_2:81038981-81039000 | None:intergenic | 50.0% | |
| TCACTGACACGAGATCCCTT+TGG | - | chr3_2:81038982-81039001 | None:intergenic | 50.0% | |
| !! | TGTCGGTGTCACTTCTCTTG+TGG | + | chr3_2:81039473-81039492 | Msa0429580:intron | 50.0% |
| ! | TGCATAGGTTGGCTCCTCTT+TGG | + | chr3_2:81039523-81039542 | Msa0429580:CDS | 50.0% |
| ! | GCATAGGTTGGCTCCTCTTT+GGG | + | chr3_2:81039524-81039543 | Msa0429580:CDS | 50.0% |
| ! | GTACATTTTGCAGGGCCTAG+AGG | + | chr3_2:81039578-81039597 | Msa0429580:CDS | 50.0% |
| !! | GTTTTGAGCATATCCCTCGC+TGG | + | chr3_2:81039871-81039890 | Msa0429580:CDS | 50.0% |
| ! | CTGGACTGGGATCTTTGATG+TGG | + | chr3_2:81039890-81039909 | Msa0429580:CDS | 50.0% |
| GTATGTCCCACCACATTGTG+TGG | + | chr3_2:81040139-81040158 | Msa0429580:intron | 50.0% | |
| !! | GTGTTGTCAATAGCGGATCG+CGG | - | chr3_2:81040481-81040500 | None:intergenic | 50.0% |
| CGATCCGCTATTGACAACAC+TGG | + | chr3_2:81040481-81040500 | Msa0429580:intron | 50.0% | |
| CAACAGACTCGGAGAAAGAG+AGG | - | chr3_2:81040532-81040551 | None:intergenic | 50.0% | |
| !! | ATTTGAGACGTGGATTGGGG+TGG | + | chr3_2:81040704-81040723 | Msa0429580:CDS | 50.0% |
| TGGCATCTTCCCAAAGTGGT+CGG | + | chr3_2:81040724-81040743 | Msa0429580:CDS | 50.0% | |
| GAGCTCAAAACCGACCACTT+TGG | - | chr3_2:81040737-81040756 | None:intergenic | 50.0% | |
| GCTCTTCACATCCTTGGTGA+TGG | + | chr3_2:81040753-81040772 | Msa0429580:CDS | 50.0% | |
| ! | AGGTGTGGCGGAGTAGTAGA+CGG | - | chr3_2:81037698-81037717 | None:intergenic | 55.0% |
| AGAACTCCGTCCCTCCAGAA+TGG | - | chr3_2:81038160-81038179 | None:intergenic | 55.0% | |
| TAGCTGGGGATAGAGGAGTG+AGG | + | chr3_2:81038594-81038613 | Msa0429580:intron | 55.0% | |
| TGGGGATAGAGGAGTGAGGA+AGG | + | chr3_2:81038598-81038617 | Msa0429580:intron | 55.0% | |
| ! | GAGTTTGGGATTTGGGCCAC+AGG | + | chr3_2:81038691-81038710 | Msa0429580:intron | 55.0% |
| TTGGGATTTGGGCCACAGGA+TGG | + | chr3_2:81038695-81038714 | Msa0429580:intron | 55.0% | |
| TGGGATTTGGGCCACAGGAT+GGG | + | chr3_2:81038696-81038715 | Msa0429580:intron | 55.0% | |
| GTCTACTTCCTCCCATCCTG+TGG | - | chr3_2:81038710-81038729 | None:intergenic | 55.0% | |
| GAAACACCAGAGGCCGATCA+AGG | - | chr3_2:81039423-81039442 | None:intergenic | 55.0% | |
| !! | GGTGTCACTTCTCTTGTGGC+AGG | + | chr3_2:81039477-81039496 | Msa0429580:intron | 55.0% |
| TCACTTCTCTTGTGGCAGGC+TGG | + | chr3_2:81039481-81039500 | Msa0429580:intron | 55.0% | |
| CACTTCTCTTGTGGCAGGCT+GGG | + | chr3_2:81039482-81039501 | Msa0429580:intron | 55.0% | |
| ! | TAGGTTGGCTCCTCTTTGGG+TGG | + | chr3_2:81039527-81039546 | Msa0429580:CDS | 55.0% |
| ! | AGGTTGGCTCCTCTTTGGGT+GGG | + | chr3_2:81039528-81039547 | Msa0429580:CDS | 55.0% |
| AGCATATCCCTCGCTGGACT+GGG | + | chr3_2:81039877-81039896 | Msa0429580:CDS | 55.0% | |
| CAAAGATCCCAGTCCAGCGA+GGG | - | chr3_2:81039887-81039906 | None:intergenic | 55.0% | |
| TCAAAGATCCCAGTCCAGCG+AGG | - | chr3_2:81039888-81039907 | None:intergenic | 55.0% | |
| CGGAGTAGTAGACGGCGTGA+GGG | - | chr3_2:81037690-81037709 | None:intergenic | 60.0% | |
| CTCCGTCCCTCCAGAATGGA+AGG | - | chr3_2:81038156-81038175 | None:intergenic | 60.0% | |
| GATTTGGGCCACAGGATGGG+AGG | + | chr3_2:81038699-81038718 | Msa0429580:intron | 60.0% | |
| CTCCTTCCTTGATCGGCCTC+TGG | + | chr3_2:81039414-81039433 | Msa0429580:intron | 60.0% | |
| CACCAGAGGCCGATCAAGGA+AGG | - | chr3_2:81039419-81039438 | None:intergenic | 60.0% | |
| CCTCTAGCACCCACCCAAAG+AGG | - | chr3_2:81039540-81039559 | None:intergenic | 60.0% | |
| CCTCTTTGGGTGGGTGCTAG+AGG | + | chr3_2:81039537-81039556 | Msa0429580:CDS | 60.0% | |
| GAGCATATCCCTCGCTGGAC+TGG | + | chr3_2:81039876-81039895 | Msa0429580:CDS | 60.0% | |
| GGGGTGGCATCTTCCCAAAG+TGG | + | chr3_2:81040720-81040739 | Msa0429580:CDS | 60.0% | |
| GCGGAGTAGTAGACGGCGTG+AGG | - | chr3_2:81037691-81037710 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 81037495 | 81041360 | 81037495 | ID=Msa0429580;Name=Msa0429580 |
| chr3_2 | mRNA | 81037495 | 81041360 | 81037495 | ID=Msa0429580-mRNA-1;Parent=Msa0429580;Name=Msa0429580-mRNA-1;_AED=0.02;_eAED=0.02;_QI=148|1|1|1|1|1|7|535|228 |
| chr3_2 | exon | 81037495 | 81037719 | 81037495 | ID=Msa0429580-mRNA-1:exon:22279;Parent=Msa0429580-mRNA-1 |
| chr3_2 | exon | 81037829 | 81037898 | 81037829 | ID=Msa0429580-mRNA-1:exon:22280;Parent=Msa0429580-mRNA-1 |
| chr3_2 | exon | 81038005 | 81038064 | 81038005 | ID=Msa0429580-mRNA-1:exon:22281;Parent=Msa0429580-mRNA-1 |
| chr3_2 | exon | 81039218 | 81039332 | 81039218 | ID=Msa0429580-mRNA-1:exon:22282;Parent=Msa0429580-mRNA-1 |
| chr3_2 | exon | 81039499 | 81039614 | 81039499 | ID=Msa0429580-mRNA-1:exon:22283;Parent=Msa0429580-mRNA-1 |
| chr3_2 | exon | 81039871 | 81039995 | 81039871 | ID=Msa0429580-mRNA-1:exon:22284;Parent=Msa0429580-mRNA-1 |
| chr3_2 | exon | 81040702 | 81041360 | 81040702 | ID=Msa0429580-mRNA-1:exon:22285;Parent=Msa0429580-mRNA-1 |
| chr3_2 | five_prime_UTR | 81037495 | 81037642 | 81037495 | ID=Msa0429580-mRNA-1:five_prime_utr;Parent=Msa0429580-mRNA-1 |
| chr3_2 | CDS | 81037643 | 81037719 | 81037643 | ID=Msa0429580-mRNA-1:cds;Parent=Msa0429580-mRNA-1 |
| chr3_2 | CDS | 81037829 | 81037898 | 81037829 | ID=Msa0429580-mRNA-1:cds;Parent=Msa0429580-mRNA-1 |
| chr3_2 | CDS | 81038005 | 81038064 | 81038005 | ID=Msa0429580-mRNA-1:cds;Parent=Msa0429580-mRNA-1 |
| chr3_2 | CDS | 81039218 | 81039332 | 81039218 | ID=Msa0429580-mRNA-1:cds;Parent=Msa0429580-mRNA-1 |
| chr3_2 | CDS | 81039499 | 81039614 | 81039499 | ID=Msa0429580-mRNA-1:cds;Parent=Msa0429580-mRNA-1 |
| chr3_2 | CDS | 81039871 | 81039995 | 81039871 | ID=Msa0429580-mRNA-1:cds;Parent=Msa0429580-mRNA-1 |
| chr3_2 | CDS | 81040702 | 81040825 | 81040702 | ID=Msa0429580-mRNA-1:cds;Parent=Msa0429580-mRNA-1 |
| chr3_2 | three_prime_UTR | 81040826 | 81041360 | 81040826 | ID=Msa0429580-mRNA-1:three_prime_utr;Parent=Msa0429580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
