Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143230 | XP_003625817.1 | 100.000 | 72 | 0 | 0 | 1 | 72 | 1 | 72 | 7.35e-44 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143230 | sp|P46270|QCR9_SOLTU | 83.333 | 72 | 12 | 0 | 1 | 72 | 1 | 72 | 4.08e-38 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143230 | G7L638 | 100.000 | 72 | 0 | 0 | 1 | 72 | 1 | 72 | 3.51e-44 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143230 | Msa0604960 | 0.837917 | 3.917200e-57 | -8.615850e-47 |
| Msa0143230 | Msa1125500 | 0.877784 | 4.760080e-69 | -8.615850e-47 |
| Msa0143230 | Msa1125580 | 0.923299 | 3.188589e-89 | -8.615850e-47 |
| Msa0143230 | Msa1164620 | 0.912934 | 1.102036e-83 | -8.615850e-47 |
| Msa0143230 | Msa1386200 | 0.969249 | 7.592562e-130 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143230 | MtrunA17_Chr7g0266271 | 100.000 | 72 | 0 | 0 | 1 | 72 | 1 | 72 | 6.76e-48 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143230 | AT3G52730.1 | 80.556 | 72 | 14 | 0 | 1 | 72 | 1 | 72 | 7.42e-39 | 123 |
| Msa0143230 | AT3G52730.2 | 76.786 | 56 | 13 | 0 | 1 | 56 | 1 | 56 | 1.07e-26 | 92.8 |
Find 39 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTCACTTATTGCAAAA+TGG | 0.252781 | 1_4:-2147271 | None:intergenic |
| TCCGATCTGATTTGAGTTCT+AGG | 0.278024 | 1_4:-2144761 | None:intergenic |
| ATATGATTTATCCCAAATAC+TGG | 0.293371 | 1_4:+2147390 | Msa0143230:three_prime_UTR |
| TCATGTATGGTTTCATTTGC+TGG | 0.324683 | 1_4:+2147315 | Msa0143230:three_prime_UTR |
| AAGAAGAGGAGGAGGCGTTT+TGG | 0.335531 | 1_4:+2144804 | Msa0143230:CDS |
| ATATGATTTATCCCAAATAC+TGG | 0.346156 | 1_4:+2147450 | Msa0143230:three_prime_UTR |
| AATATAATAAAACTTCAAAA+TGG | 0.380237 | 1_4:-2147208 | None:intergenic |
| TCTGGGAAATAAATAATGTT+GGG | 0.387527 | 1_4:+2145014 | Msa0143230:CDS |
| TGTTGACCTTAAGTCATGTA+TGG | 0.394843 | 1_4:+2147302 | Msa0143230:three_prime_UTR |
| TCGTTGCAGGCTGTGGATTA+CGG | 0.406296 | 1_4:+2144980 | Msa0143230:intron |
| ATTACGGTGTTCACAAGCTC+TGG | 0.424543 | 1_4:+2144996 | Msa0143230:CDS |
| TACATTTGAGAACGGTGAAA+AGG | 0.431138 | 1_4:+2144695 | Msa0143230:five_prime_UTR |
| ATGAAACCATACATGACTTA+AGG | 0.434265 | 1_4:-2147308 | None:intergenic |
| CTCTGGGAAATAAATAATGT+TGG | 0.443669 | 1_4:+2145013 | Msa0143230:CDS |
| CCGATCTGATTTGAGTTCTA+GGG | 0.456736 | 1_4:-2144760 | None:intergenic |
| TTCTGTGCTGGGGCAAAGGC+CGG | 0.481651 | 1_4:+2147153 | Msa0143230:CDS |
| TATGTTACCTTCGTCATCGC+CGG | 0.481783 | 1_4:+2144865 | Msa0143230:CDS |
| ATATGAAGACATTTCTGTGC+TGG | 0.485619 | 1_4:+2147141 | Msa0143230:CDS |
| TATGAAGACATTTCTGTGCT+GGG | 0.504170 | 1_4:+2147142 | Msa0143230:CDS |
| TGGTTTCATTTGCTGGCTGT+TGG | 0.509038 | 1_4:+2147322 | Msa0143230:three_prime_UTR |
| ACATTTCTGTGCTGGGGCAA+AGG | 0.516213 | 1_4:+2147149 | Msa0143230:CDS |
| ACATTTGAGAACGGTGAAAA+GGG | 0.519176 | 1_4:+2144696 | Msa0143230:five_prime_UTR |
| CAGACAGTTCACTCGTCTAC+CGG | 0.527733 | 1_4:-2147172 | None:intergenic |
| CCGGTACGGTTCGTTTGAAA+CGG | 0.532497 | 1_4:+2144648 | None:intergenic |
| CTCAAATCAGATCGGAACCA+TGG | 0.553505 | 1_4:+2144768 | Msa0143230:exon |
| ATTGAAGTGAACTTACGAGC+TGG | 0.554063 | 1_4:+2147239 | Msa0143230:three_prime_UTR |
| CCTTTGTTTACATTTGAGAA+CGG | 0.567826 | 1_4:+2144687 | Msa0143230:five_prime_UTR |
| TTACGGTGTTCACAAGCTCT+GGG | 0.588806 | 1_4:+2144997 | Msa0143230:CDS |
| CCCTAGAACTCAAATCAGAT+CGG | 0.590863 | 1_4:+2144760 | Msa0143230:five_prime_UTR |
| CTGGGAAATAAATAATGTTG+GGG | 0.603916 | 1_4:+2145015 | Msa0143230:CDS |
| GGCGCATAAGAACCTTGTAA+AGG | 0.605705 | 1_4:-2144831 | None:intergenic |
| CCGTTCTCAAATGTAAACAA+AGG | 0.621436 | 1_4:-2144687 | None:intergenic |
| GCTGCTAAAAGAAGAGGAGG+AGG | 0.621931 | 1_4:+2144796 | Msa0143230:CDS |
| GAATCCGCTGCTAAAAGAAG+AGG | 0.626583 | 1_4:+2144790 | Msa0143230:CDS |
| AAAAGCACCGGCGATGACGA+AGG | 0.627325 | 1_4:-2144872 | None:intergenic |
| TCCGCTGCTAAAAGAAGAGG+AGG | 0.631604 | 1_4:+2144793 | Msa0143230:CDS |
| ATGAAGACATTTCTGTGCTG+GGG | 0.643761 | 1_4:+2147143 | Msa0143230:CDS |
| CCGTTCACCGAGAAAAGCAC+CGG | 0.644147 | 1_4:-2144884 | None:intergenic |
| AGGTAACATAGACAGAGTTG+CGG | 0.713031 | 1_4:-2144852 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAATAAAACTTCAAAA+TGG | - | chr1_4:2147211-2147230 | None:intergenic | 10.0% |
| !! | ATTAAGAGTAAAATTAAAAG+GGG | - | chr1_4:2144923-2144942 | None:intergenic | 15.0% |
| !! | GATTAAGAGTAAAATTAAAA+GGG | - | chr1_4:2144924-2144943 | None:intergenic | 15.0% |
| !! | TACTATTATATAACTTTGAA+AGG | + | chr1_4:2145151-2145170 | Msa0143230:intron | 15.0% |
| !!! | ACTATTATATAACTTTGAAA+GGG | + | chr1_4:2145152-2145171 | Msa0143230:intron | 15.0% |
| !!! | TTTTTATAGAATAATCTCTT+AGG | + | chr1_4:2145246-2145265 | Msa0143230:intron | 15.0% |
| !! | AATATAATAACAACATAGAT+TGG | - | chr1_4:2145816-2145835 | None:intergenic | 15.0% |
| !!! | TTGAAGTTTTATTATATTCA+TGG | + | chr1_4:2147213-2147232 | Msa0143230:three_prime_UTR | 15.0% |
| !! | CGATTAAGAGTAAAATTAAA+AGG | - | chr1_4:2144925-2144944 | None:intergenic | 20.0% |
| !!! | GCTTATGAAATTTGTATTTT+TGG | + | chr1_4:2145180-2145199 | Msa0143230:intron | 20.0% |
| !! | GTTGGAAATATATAGAAAAA+TGG | - | chr1_4:2145923-2145942 | None:intergenic | 20.0% |
| !! | AATTACTTCATATAAACAAC+AGG | - | chr1_4:2146879-2146898 | None:intergenic | 20.0% |
| !! | TTGTTTATATGAAGTAATTC+TGG | + | chr1_4:2146880-2146899 | Msa0143230:intron | 20.0% |
| !! | CTTGAAAAAAAAGAAGATAA+AGG | + | chr1_4:2146997-2147016 | Msa0143230:intron | 20.0% |
| !!! | GTTATCTGAAATTAAGTTAA+AGG | + | chr1_4:2147028-2147047 | Msa0143230:intron | 20.0% |
| !! | GTAAAAATATGAATCACAAA+TGG | - | chr1_4:2147087-2147106 | None:intergenic | 20.0% |
| !!! | ATTTTCTTAATCCAGTATTT+GGG | - | chr1_4:2147404-2147423 | None:intergenic | 20.0% |
| !!! | ATTTTCTTAATCCAGTATTT+GGG | - | chr1_4:2147404-2147423 | None:intergenic | 20.0% |
| ! | TCTGGGAAATAAATAATGTT+GGG | + | chr1_4:2145014-2145033 | Msa0143230:CDS | 25.0% |
| !! | ATATAACTTTGAAAGGGATT+AGG | + | chr1_4:2145158-2145177 | Msa0143230:intron | 25.0% |
| !!! | TGTTGAAATGTTTTTTCCTT+GGG | + | chr1_4:2145223-2145242 | Msa0143230:intron | 25.0% |
| ! | GATTATTCTATAAAAACCCA+AGG | - | chr1_4:2145242-2145261 | None:intergenic | 25.0% |
| !! | TGTTATCTCTTTGAAGAATA+TGG | + | chr1_4:2145449-2145468 | Msa0143230:intron | 25.0% |
| ! | TCTATTCCTATTATTCATTG+TGG | + | chr1_4:2145539-2145558 | Msa0143230:intron | 25.0% |
| ! | CATCACTATTTCAAAAAAGA+TGG | - | chr1_4:2146075-2146094 | None:intergenic | 25.0% |
| !!! | TTTTGAAATAGTGATGTTGT+AGG | + | chr1_4:2146079-2146098 | Msa0143230:intron | 25.0% |
| !! | TTTGAAATAGTGATGTTGTA+GGG | + | chr1_4:2146080-2146099 | Msa0143230:intron | 25.0% |
| !! | AAAATTGTATTGTGGGATTT+TGG | - | chr1_4:2146199-2146218 | None:intergenic | 25.0% |
| ! | GAACACAAAAATTGTATTGT+GGG | - | chr1_4:2146206-2146225 | None:intergenic | 25.0% |
| !!! | CATTAATCTCTACTTTGTTT+TGG | + | chr1_4:2146447-2146466 | Msa0143230:intron | 25.0% |
| !!! | TTTGTTTTGGTTGTTTCTTT+TGG | + | chr1_4:2146460-2146479 | Msa0143230:intron | 25.0% |
| !!! | TTTGGTTCTTTTTCACTAAT+CGG | + | chr1_4:2146478-2146497 | Msa0143230:intron | 25.0% |
| ! | ATATGTTAACATGATCAAGT+AGG | - | chr1_4:2146559-2146578 | None:intergenic | 25.0% |
| ! | AATTACTTCGTAAAAACAAC+AGG | - | chr1_4:2146653-2146672 | None:intergenic | 25.0% |
| !!! | TTGTTTTTACGAAGTAATTC+TGG | + | chr1_4:2146654-2146673 | Msa0143230:intron | 25.0% |
| ! | CATATTCACTTATTGCAAAA+TGG | - | chr1_4:2147274-2147293 | None:intergenic | 25.0% |
| ! | ATATGATTTATCCCAAATAC+TGG | + | chr1_4:2147390-2147409 | Msa0143230:three_prime_UTR | 25.0% |
| !! | GATTTTCTTAATCCAGTATT+TGG | - | chr1_4:2147405-2147424 | None:intergenic | 25.0% |
| ! | ATATGATTTATCCCAAATAC+TGG | + | chr1_4:2147390-2147409 | Msa0143230:three_prime_UTR | 25.0% |
| !! | GATTTTCTTAATCCAGTATT+TGG | - | chr1_4:2147405-2147424 | None:intergenic | 25.0% |
| ! | CCTTTGTTTACATTTGAGAA+CGG | + | chr1_4:2144687-2144706 | Msa0143230:five_prime_UTR | 30.0% |
| ! | CTCTGGGAAATAAATAATGT+TGG | + | chr1_4:2145013-2145032 | Msa0143230:CDS | 30.0% |
| CTGGGAAATAAATAATGTTG+GGG | + | chr1_4:2145015-2145034 | Msa0143230:CDS | 30.0% | |
| TCGATAGATTAAGCATAAAG+TGG | - | chr1_4:2145054-2145073 | None:intergenic | 30.0% | |
| !!! | GTGTTGAAATGTTTTTTCCT+TGG | + | chr1_4:2145222-2145241 | Msa0143230:intron | 30.0% |
| ! | GATTCTGATTTCGTGTTTTA+TGG | - | chr1_4:2145350-2145369 | None:intergenic | 30.0% |
| TAAGTTATGTCGTGTGTTAT+TGG | + | chr1_4:2145418-2145437 | Msa0143230:intron | 30.0% | |
| ATATAACAGACAACTGTGTA+AGG | + | chr1_4:2145495-2145514 | Msa0143230:intron | 30.0% | |
| ! | TTGTCATCTGATTTTCTCTT+AGG | + | chr1_4:2145580-2145599 | Msa0143230:intron | 30.0% |
| !!! | ATTTTCTCTTAGGCTTTGTT+TGG | + | chr1_4:2145590-2145609 | Msa0143230:intron | 30.0% |
| !!! | TTTTCTCTTAGGCTTTGTTT+GGG | + | chr1_4:2145591-2145610 | Msa0143230:intron | 30.0% |
| TGGAAGAAATAGAAGACATT+GGG | + | chr1_4:2145664-2145683 | Msa0143230:intron | 30.0% | |
| AATAAAAAATCCCCCTCATT+TGG | + | chr1_4:2145721-2145740 | Msa0143230:intron | 30.0% | |
| ATAAAAAATCCCCCTCATTT+GGG | + | chr1_4:2145722-2145741 | Msa0143230:intron | 30.0% | |
| GGGAACTCAAAAATTGTATT+GGG | + | chr1_4:2145744-2145763 | Msa0143230:intron | 30.0% | |
| GGAACTCAAAAATTGTATTG+GGG | + | chr1_4:2145745-2145764 | Msa0143230:intron | 30.0% | |
| GAACTCAAAAATTGTATTGG+GGG | + | chr1_4:2145746-2145765 | Msa0143230:intron | 30.0% | |
| AAACTTGCAAATAGAACCTA+AGG | - | chr1_4:2145992-2146011 | None:intergenic | 30.0% | |
| TTAGGTTCTATTTGCAAGTT+TGG | + | chr1_4:2145991-2146010 | Msa0143230:intron | 30.0% | |
| GGAACACAAAAATTGTATTG+TGG | - | chr1_4:2146207-2146226 | None:intergenic | 30.0% | |
| AAAACAAAATACCCTCAACT+GGG | - | chr1_4:2146230-2146249 | None:intergenic | 30.0% | |
| TAAAACAAAATACCCTCAAC+TGG | - | chr1_4:2146231-2146250 | None:intergenic | 30.0% | |
| !!! | GTTGAGGGTATTTTGTTTTA+TGG | + | chr1_4:2146231-2146250 | Msa0143230:intron | 30.0% |
| AAAATTGTTTCAACAGGCTT+TGG | - | chr1_4:2146592-2146611 | None:intergenic | 30.0% | |
| TCCAGTAAAATTGTTTCAAC+AGG | - | chr1_4:2146598-2146617 | None:intergenic | 30.0% | |
| TTTCATTGTTTACGATGCTT+TGG | + | chr1_4:2146741-2146760 | Msa0143230:intron | 30.0% | |
| !! | ATGACTCTTCTTTTGAAGAA+GGG | - | chr1_4:2146772-2146791 | None:intergenic | 30.0% |
| !! | TATGACTCTTCTTTTGAAGA+AGG | - | chr1_4:2146773-2146792 | None:intergenic | 30.0% |
| AAAAGTGACACTAAGCAATT+GGG | - | chr1_4:2146844-2146863 | None:intergenic | 30.0% | |
| TTTCATTGTTTACGATGCTT+TGG | + | chr1_4:2146741-2146760 | Msa0143230:intron | 30.0% | |
| ATGAAACCATACATGACTTA+AGG | - | chr1_4:2147311-2147330 | None:intergenic | 30.0% | |
| CCGTTCTCAAATGTAAACAA+AGG | - | chr1_4:2144690-2144709 | None:intergenic | 35.0% | |
| TACATTTGAGAACGGTGAAA+AGG | + | chr1_4:2144695-2144714 | Msa0143230:five_prime_UTR | 35.0% | |
| ACATTTGAGAACGGTGAAAA+GGG | + | chr1_4:2144696-2144715 | Msa0143230:five_prime_UTR | 35.0% | |
| !!! | GTTTCGCTAGTTTTAAGATC+TGG | + | chr1_4:2145127-2145146 | Msa0143230:intron | 35.0% |
| !! | GTGTGATTGTTGCTTCATTT+TGG | + | chr1_4:2145295-2145314 | Msa0143230:intron | 35.0% |
| ! | TCTGATTTCGTGTTTTATGG+TGG | - | chr1_4:2145347-2145366 | None:intergenic | 35.0% |
| GAAACAACAATCACAGTTAC+AGG | - | chr1_4:2145382-2145401 | None:intergenic | 35.0% | |
| ATGCAGCCACAATGAATAAT+AGG | - | chr1_4:2145548-2145567 | None:intergenic | 35.0% | |
| TTATTCATTGTGGCTGCATT+AGG | + | chr1_4:2145549-2145568 | Msa0143230:intron | 35.0% | |
| !!! | GAGAGTTTTGGAAAAAAGGA+AGG | + | chr1_4:2145635-2145654 | Msa0143230:intron | 35.0% |
| GTGGAAGAAATAGAAGACAT+TGG | + | chr1_4:2145663-2145682 | Msa0143230:intron | 35.0% | |
| AAGAAATAGAAGACATTGGG+AGG | + | chr1_4:2145667-2145686 | Msa0143230:intron | 35.0% | |
| TAAAAAATCCCCCTCATTTG+GGG | + | chr1_4:2145723-2145742 | Msa0143230:intron | 35.0% | |
| GGGGAACTCAAAAATTGTAT+TGG | + | chr1_4:2145743-2145762 | Msa0143230:intron | 35.0% | |
| TCAAAAATTGTATTGGGGGA+GGG | + | chr1_4:2145750-2145769 | Msa0143230:intron | 35.0% | |
| !! | TAGAACCTAAGGCTTTGTTT+GGG | - | chr1_4:2145981-2146000 | None:intergenic | 35.0% |
| !! | ATAGAACCTAAGGCTTTGTT+TGG | - | chr1_4:2145982-2146001 | None:intergenic | 35.0% |
| GTTCTATTTGCAAGTTTGGA+GGG | + | chr1_4:2145995-2146014 | Msa0143230:intron | 35.0% | |
| TTCTATTTGCAAGTTTGGAG+GGG | + | chr1_4:2145996-2146015 | Msa0143230:intron | 35.0% | |
| ! | TTGTATTGTGGGATTTTGGA+AGG | - | chr1_4:2146195-2146214 | None:intergenic | 35.0% |
| AAACAAAATACCCTCAACTG+GGG | - | chr1_4:2146229-2146248 | None:intergenic | 35.0% | |
| ! | TGAAAGGAATGAAGGACTTT+TGG | - | chr1_4:2146287-2146306 | None:intergenic | 35.0% |
| ATATAAGCTGCAAACACCTA+AGG | - | chr1_4:2146349-2146368 | None:intergenic | 35.0% | |
| AGCAGAGCAGGTATATAATT+TGG | - | chr1_4:2146401-2146420 | None:intergenic | 35.0% | |
| !! | CTTTTTCACTAATCGGTAAC+CGG | + | chr1_4:2146485-2146504 | Msa0143230:intron | 35.0% |
| AGGAAACAATGAGTGAAAGT+CGG | - | chr1_4:2146528-2146547 | None:intergenic | 35.0% | |
| ! | GCCTGTTGAAACAATTTTAC+TGG | + | chr1_4:2146594-2146613 | Msa0143230:intron | 35.0% |
| AAAGTGACACTAAGCAATTG+GGG | - | chr1_4:2146843-2146862 | None:intergenic | 35.0% | |
| CAAAAGTGACACTAAGCAAT+TGG | - | chr1_4:2146845-2146864 | None:intergenic | 35.0% | |
| ATATGAAGACATTTCTGTGC+TGG | + | chr1_4:2147141-2147160 | Msa0143230:CDS | 35.0% | |
| TATGAAGACATTTCTGTGCT+GGG | + | chr1_4:2147142-2147161 | Msa0143230:CDS | 35.0% | |
| TGTTGACCTTAAGTCATGTA+TGG | + | chr1_4:2147302-2147321 | Msa0143230:three_prime_UTR | 35.0% | |
| TCATGTATGGTTTCATTTGC+TGG | + | chr1_4:2147315-2147334 | Msa0143230:three_prime_UTR | 35.0% | |
| ! | CCGATCTGATTTGAGTTCTA+GGG | - | chr1_4:2144763-2144782 | None:intergenic | 40.0% |
| CCCTAGAACTCAAATCAGAT+CGG | + | chr1_4:2144760-2144779 | Msa0143230:five_prime_UTR | 40.0% | |
| ! | TCCGATCTGATTTGAGTTCT+AGG | - | chr1_4:2144764-2144783 | None:intergenic | 40.0% |
| AGGTAACATAGACAGAGTTG+CGG | - | chr1_4:2144855-2144874 | None:intergenic | 40.0% | |
| !! | TTCATTTTGGCATGATACCG+TGG | + | chr1_4:2145308-2145327 | Msa0143230:intron | 40.0% |
| CAGACAACTGTGTAAGGAAA+TGG | + | chr1_4:2145501-2145520 | Msa0143230:intron | 40.0% | |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | + | chr1_4:2145598-2145617 | Msa0143230:intron | 40.0% |
| !!! | AGGGGAGAGTTTTGGAAAAA+AGG | + | chr1_4:2145631-2145650 | Msa0143230:intron | 40.0% |
| AAAAAATCCCCCTCATTTGG+GGG | + | chr1_4:2145724-2145743 | Msa0143230:intron | 40.0% | |
| !!! | TTTTGAGTTCCCCCAAATGA+GGG | - | chr1_4:2145736-2145755 | None:intergenic | 40.0% |
| !!! | TTTTTGAGTTCCCCCAAATG+AGG | - | chr1_4:2145737-2145756 | None:intergenic | 40.0% |
| CTCAAAAATTGTATTGGGGG+AGG | + | chr1_4:2145749-2145768 | Msa0143230:intron | 40.0% | |
| ! | CTTTGTTTGGGAGTTTGAAG+GGG | - | chr1_4:2145969-2145988 | None:intergenic | 40.0% |
| !! | GCTTTGTTTGGGAGTTTGAA+GGG | - | chr1_4:2145970-2145989 | None:intergenic | 40.0% |
| AAACTCCCAAACAAAGCCTT+AGG | + | chr1_4:2145973-2145992 | Msa0143230:intron | 40.0% | |
| GGTTCTATTTGCAAGTTTGG+AGG | + | chr1_4:2145994-2146013 | Msa0143230:intron | 40.0% | |
| TCTATTTGCAAGTTTGGAGG+GGG | + | chr1_4:2145997-2146016 | Msa0143230:intron | 40.0% | |
| AACAAAATACCCTCAACTGG+GGG | - | chr1_4:2146228-2146247 | None:intergenic | 40.0% | |
| ! | AGGAATGAAGGACTTTTGGA+GGG | - | chr1_4:2146283-2146302 | None:intergenic | 40.0% |
| ! | AAGGAATGAAGGACTTTTGG+AGG | - | chr1_4:2146284-2146303 | None:intergenic | 40.0% |
| ! | GCTTTAGGTGAAAGGAATGA+AGG | - | chr1_4:2146295-2146314 | None:intergenic | 40.0% |
| ! | ATTTTGTGAGCTGCTGATCT+TGG | + | chr1_4:2146423-2146442 | Msa0143230:intron | 40.0% |
| ! | ACTAATCGGTAACCGGTTTA+TGG | + | chr1_4:2146492-2146511 | Msa0143230:intron | 40.0% |
| TGATCAAGTAGGATCAGTGT+AGG | - | chr1_4:2146548-2146567 | None:intergenic | 40.0% | |
| TTGAATGCAAAAGTGACGCT+AGG | - | chr1_4:2146626-2146645 | None:intergenic | 40.0% | |
| ATGAAGACATTTCTGTGCTG+GGG | + | chr1_4:2147143-2147162 | Msa0143230:CDS | 40.0% | |
| ATTGAAGTGAACTTACGAGC+TGG | + | chr1_4:2147239-2147258 | Msa0143230:three_prime_UTR | 40.0% | |
| CTCAAATCAGATCGGAACCA+TGG | + | chr1_4:2144768-2144787 | Msa0143230:exon | 45.0% | |
| !! | TCTTTTAGCAGCGGATTCCA+TGG | - | chr1_4:2144788-2144807 | None:intergenic | 45.0% |
| GAATCCGCTGCTAAAAGAAG+AGG | + | chr1_4:2144790-2144809 | Msa0143230:CDS | 45.0% | |
| ! | TCCTCCTCTTCTTTTAGCAG+CGG | - | chr1_4:2144797-2144816 | None:intergenic | 45.0% |
| !!! | CGTTTTGGAAGGCCTTTACA+AGG | + | chr1_4:2144819-2144838 | Msa0143230:CDS | 45.0% |
| GGCGCATAAGAACCTTGTAA+AGG | - | chr1_4:2144834-2144853 | None:intergenic | 45.0% | |
| TATGTTACCTTCGTCATCGC+CGG | + | chr1_4:2144865-2144884 | Msa0143230:CDS | 45.0% | |
| AGATCGCTGAATTTCGTTGC+AGG | + | chr1_4:2144967-2144986 | Msa0143230:intron | 45.0% | |
| ATTACGGTGTTCACAAGCTC+TGG | + | chr1_4:2144996-2145015 | Msa0143230:CDS | 45.0% | |
| TTACGGTGTTCACAAGCTCT+GGG | + | chr1_4:2144997-2145016 | Msa0143230:CDS | 45.0% | |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr1_4:2145602-2145621 | Msa0143230:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr1_4:2145603-2145622 | Msa0143230:intron | 45.0% |
| GGAAAAAAGGAAGGAGCAAG+TGG | + | chr1_4:2145644-2145663 | Msa0143230:intron | 45.0% | |
| ATAGAAGACATTGGGAGGAG+AGG | + | chr1_4:2145672-2145691 | Msa0143230:intron | 45.0% | |
| TAGAAGACATTGGGAGGAGA+GGG | + | chr1_4:2145673-2145692 | Msa0143230:intron | 45.0% | |
| ! | TTTGAGTTCCCCCAAATGAG+GGG | - | chr1_4:2145735-2145754 | None:intergenic | 45.0% |
| ! | ATTGTATTGGGGGAGGGTTT+TGG | + | chr1_4:2145756-2145775 | Msa0143230:intron | 45.0% |
| ! | TTGTATTGGGGGAGGGTTTT+GGG | + | chr1_4:2145757-2145776 | Msa0143230:intron | 45.0% |
| TTTGGGAGTTTGAAGGGGAA+GGG | - | chr1_4:2145964-2145983 | None:intergenic | 45.0% | |
| !! | GGCTTTGTTTGGGAGTTTGA+AGG | - | chr1_4:2145971-2145990 | None:intergenic | 45.0% |
| ! | TTTTTGTGTTCCCCCAGTTG+AGG | + | chr1_4:2146215-2146234 | Msa0143230:intron | 45.0% |
| ! | TTTTGTGTTCCCCCAGTTGA+GGG | + | chr1_4:2146216-2146235 | Msa0143230:intron | 45.0% |
| !! | GGAATGAAGGACTTTTGGAG+GGG | - | chr1_4:2146282-2146301 | None:intergenic | 45.0% |
| !! | AAGAGAGGGCTTTAGGTGAA+AGG | - | chr1_4:2146303-2146322 | None:intergenic | 45.0% |
| TAAGGCTCTGTTTGCGAGTT+TGG | - | chr1_4:2146331-2146350 | None:intergenic | 45.0% | |
| AAACTCGCAAACAGAGCCTT+AGG | + | chr1_4:2146330-2146349 | Msa0143230:intron | 45.0% | |
| CTCACAAAATTCAGCAGAGC+AGG | - | chr1_4:2146413-2146432 | None:intergenic | 45.0% | |
| GGCAGTAGAGAACCATAAAC+CGG | - | chr1_4:2146507-2146526 | None:intergenic | 45.0% | |
| ! | TGGTTTCATTTGCTGGCTGT+TGG | + | chr1_4:2147322-2147341 | Msa0143230:three_prime_UTR | 45.0% |
| TCCGCTGCTAAAAGAAGAGG+AGG | + | chr1_4:2144793-2144812 | Msa0143230:CDS | 50.0% | |
| GCTGCTAAAAGAAGAGGAGG+AGG | + | chr1_4:2144796-2144815 | Msa0143230:CDS | 50.0% | |
| !!! | AAGAAGAGGAGGAGGCGTTT+TGG | + | chr1_4:2144804-2144823 | Msa0143230:CDS | 50.0% |
| CTGAATTTCGTTGCAGGCTG+TGG | + | chr1_4:2144973-2144992 | Msa0143230:intron | 50.0% | |
| ! | TCGTTGCAGGCTGTGGATTA+CGG | + | chr1_4:2144980-2144999 | Msa0143230:intron | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr1_4:2145601-2145620 | Msa0143230:intron | 50.0% |
| TTGAGTTCCCCCAAATGAGG+GGG | - | chr1_4:2145734-2145753 | None:intergenic | 50.0% | |
| ! | TGTATTGGGGGAGGGTTTTG+GGG | + | chr1_4:2145758-2145777 | Msa0143230:intron | 50.0% |
| GTTTGGGAGTTTGAAGGGGA+AGG | - | chr1_4:2145965-2145984 | None:intergenic | 50.0% | |
| ATTTGCAAGTTTGGAGGGGG+AGG | + | chr1_4:2146000-2146019 | Msa0143230:intron | 50.0% | |
| TTTGCAAGTTTGGAGGGGGA+GGG | + | chr1_4:2146001-2146020 | Msa0143230:intron | 50.0% | |
| !! | TTTGGAGGGGATGGCTTTGA+GGG | - | chr1_4:2146269-2146288 | None:intergenic | 50.0% |
| !! | TTTTGGAGGGGATGGCTTTG+AGG | - | chr1_4:2146270-2146289 | None:intergenic | 50.0% |
| !! | TGAAGGACTTTTGGAGGGGA+TGG | - | chr1_4:2146278-2146297 | None:intergenic | 50.0% |
| CTCTGTTTGCGAGTTTGGAG+GGG | - | chr1_4:2146326-2146345 | None:intergenic | 50.0% | |
| GCTCTGTTTGCGAGTTTGGA+GGG | - | chr1_4:2146327-2146346 | None:intergenic | 50.0% | |
| ACATTTCTGTGCTGGGGCAA+AGG | + | chr1_4:2147149-2147168 | Msa0143230:CDS | 50.0% | |
| CAGACAGTTCACTCGTCTAC+CGG | - | chr1_4:2147175-2147194 | None:intergenic | 50.0% | |
| !!! | AGAGGAGGAGGCGTTTTGGA+AGG | + | chr1_4:2144808-2144827 | Msa0143230:CDS | 55.0% |
| !! | AAAAGCACCGGCGATGACGA+AGG | - | chr1_4:2144875-2144894 | None:intergenic | 55.0% |
| ! | GTCATCGCCGGTGCTTTTCT+CGG | + | chr1_4:2144877-2144896 | Msa0143230:CDS | 55.0% |
| ! | CCGTTCACCGAGAAAAGCAC+CGG | - | chr1_4:2144887-2144906 | None:intergenic | 55.0% |
| ! | CCGGTGCTTTTCTCGGTGAA+CGG | + | chr1_4:2144884-2144903 | Msa0143230:CDS | 55.0% |
| ! | CGGTGCTTTTCTCGGTGAAC+GGG | + | chr1_4:2144885-2144904 | Msa0143230:CDS | 55.0% |
| GATACCGTGGCTGTCAACTG+CGG | + | chr1_4:2145321-2145340 | Msa0143230:intron | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr1_4:2145606-2145625 | Msa0143230:intron | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr1_4:2145607-2145626 | Msa0143230:intron | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | + | chr1_4:2145608-2145627 | Msa0143230:intron | 55.0% | |
| ACATTGGGAGGAGAGGGCTT+TGG | + | chr1_4:2145679-2145698 | Msa0143230:intron | 55.0% | |
| !! | GTATTGGGGGAGGGTTTTGG+GGG | + | chr1_4:2145759-2145778 | Msa0143230:intron | 55.0% |
| !!! | TATTGGGGGAGGGTTTTGGG+GGG | + | chr1_4:2145760-2145779 | Msa0143230:intron | 55.0% |
| !!! | AGGGTTTTGGGGGGTTATGG+AGG | + | chr1_4:2145769-2145788 | Msa0143230:intron | 55.0% |
| !!! | GGGTTTTGGGGGGTTATGGA+GGG | + | chr1_4:2145770-2145789 | Msa0143230:intron | 55.0% |
| GAGTTTGAAGGGGAAGGGAG+GGG | - | chr1_4:2145959-2145978 | None:intergenic | 55.0% | |
| GGAGTTTGAAGGGGAAGGGA+GGG | - | chr1_4:2145960-2145979 | None:intergenic | 55.0% | |
| !! | GGTTTGGGGGTGGATTGTAG+AGG | + | chr1_4:2146031-2146050 | Msa0143230:intron | 55.0% |
| !! | TTGGAGGGGATGGCTTTGAG+GGG | - | chr1_4:2146268-2146287 | None:intergenic | 55.0% |
| CGAGTTTGGAGGGGAAGAGA+GGG | - | chr1_4:2146317-2146336 | None:intergenic | 55.0% | |
| GGCTCTGTTTGCGAGTTTGG+AGG | - | chr1_4:2146328-2146347 | None:intergenic | 55.0% | |
| ! | TTGGGAGGAGAGGGCTTTGG+AGG | + | chr1_4:2145682-2145701 | Msa0143230:intron | 60.0% |
| !!! | GGGAGGGTTTTGGGGGGTTA+TGG | + | chr1_4:2145766-2145785 | Msa0143230:intron | 60.0% |
| AAGGGAGGGGAGGGATTTGG+GGG | - | chr1_4:2145946-2145965 | None:intergenic | 60.0% | |
| GAAGGGAGGGGAGGGATTTG+GGG | - | chr1_4:2145947-2145966 | None:intergenic | 60.0% | |
| GGAAGGGAGGGGAGGGATTT+GGG | - | chr1_4:2145948-2145967 | None:intergenic | 60.0% | |
| TTGAAGGGGAAGGGAGGGGA+GGG | - | chr1_4:2145955-2145974 | None:intergenic | 60.0% | |
| TTTGAAGGGGAAGGGAGGGG+AGG | - | chr1_4:2145956-2145975 | None:intergenic | 60.0% | |
| GGGAGTTTGAAGGGGAAGGG+AGG | - | chr1_4:2145961-2145980 | None:intergenic | 60.0% | |
| GGAGGGGAAGAGAGGGCTTT+AGG | - | chr1_4:2146310-2146329 | None:intergenic | 60.0% | |
| GCGAGTTTGGAGGGGAAGAG+AGG | - | chr1_4:2146318-2146337 | None:intergenic | 60.0% | |
| TTCTGTGCTGGGGCAAAGGC+CGG | + | chr1_4:2147153-2147172 | Msa0143230:CDS | 60.0% | |
| GTGGCCGCAGTTGACAGCCA+CGG | - | chr1_4:2145328-2145347 | None:intergenic | 65.0% | |
| GGAGTTTGGAGGGGAGGGGA+GGG | + | chr1_4:2145612-2145631 | Msa0143230:intron | 65.0% | |
| GAGTTTGGAGGGGAGGGGAG+GGG | + | chr1_4:2145613-2145632 | Msa0143230:intron | 65.0% | |
| ! | GGGAGGGGAGGGGAGAGTTT+TGG | + | chr1_4:2145623-2145642 | Msa0143230:intron | 65.0% |
| AGGGGAGGGATTTGGGGGGT+TGG | - | chr1_4:2145941-2145960 | None:intergenic | 65.0% | |
| AGGGAGGGGAGGGATTTGGG+GGG | - | chr1_4:2145945-2145964 | None:intergenic | 65.0% | |
| GGGAAGGGAGGGGAGGGATT+TGG | - | chr1_4:2145949-2145968 | None:intergenic | 65.0% | |
| GCAAGTTTGGAGGGGGAGGG+AGG | + | chr1_4:2146004-2146023 | Msa0143230:intron | 65.0% | |
| GGGAGTTTGGAGGGGAGGGG+AGG | + | chr1_4:2145611-2145630 | Msa0143230:intron | 70.0% | |
| TTTGGAGGGGGAGGGAGGCG+AGG | + | chr1_4:2146009-2146028 | Msa0143230:intron | 70.0% | |
| TTGGAGGGGGAGGGAGGCGA+GGG | + | chr1_4:2146010-2146029 | Msa0143230:intron | 70.0% | |
| GGGGAGGGAGGCGAGGGTTT+GGG | + | chr1_4:2146016-2146035 | Msa0143230:intron | 70.0% | |
| GGGAGGGAGGCGAGGGTTTG+GGG | + | chr1_4:2146017-2146036 | Msa0143230:intron | 70.0% | |
| GGAGGGAGGCGAGGGTTTGG+GGG | + | chr1_4:2146018-2146037 | Msa0143230:intron | 70.0% | |
| GGGGGAGGGAGGCGAGGGTT+TGG | + | chr1_4:2146015-2146034 | Msa0143230:intron | 75.0% | |
| GGGAGGCGAGGGTTTGGGGG+TGG | + | chr1_4:2146021-2146040 | Msa0143230:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2144656 | 2147529 | 2144656 | ID=Msa0143230;Name=Msa0143230 |
| chr1_4 | mRNA | 2144656 | 2147529 | 2144656 | ID=Msa0143230-mRNA-1;Parent=Msa0143230;Name=Msa0143230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=131|1|1|1|1|1|3|343|72 |
| chr1_4 | exon | 2144656 | 2144906 | 2144656 | ID=Msa0143230-mRNA-1:exon:808;Parent=Msa0143230-mRNA-1 |
| chr1_4 | exon | 2144989 | 2145036 | 2144989 | ID=Msa0143230-mRNA-1:exon:809;Parent=Msa0143230-mRNA-1 |
| chr1_4 | exon | 2147136 | 2147529 | 2147136 | ID=Msa0143230-mRNA-1:exon:810;Parent=Msa0143230-mRNA-1 |
| chr1_4 | five_prime_UTR | 2144656 | 2144786 | 2144656 | ID=Msa0143230-mRNA-1:five_prime_utr;Parent=Msa0143230-mRNA-1 |
| chr1_4 | CDS | 2144787 | 2144906 | 2144787 | ID=Msa0143230-mRNA-1:cds;Parent=Msa0143230-mRNA-1 |
| chr1_4 | CDS | 2144989 | 2145036 | 2144989 | ID=Msa0143230-mRNA-1:cds;Parent=Msa0143230-mRNA-1 |
| chr1_4 | CDS | 2147136 | 2147186 | 2147136 | ID=Msa0143230-mRNA-1:cds;Parent=Msa0143230-mRNA-1 |
| chr1_4 | three_prime_UTR | 2147187 | 2147529 | 2147187 | ID=Msa0143230-mRNA-1:three_prime_utr;Parent=Msa0143230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
