AlfalfaGEDB | Msa1164620

M. sativa cultivar zhongmu-4 / Msa1164620

KEGG: K00419
GO: -
PFAM: PF05365.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164620	XP_003625817.1	100.000	72	0	0	1	72	1	72	7.35e-44	145

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164620	sp\|P46270\|QCR9_SOLTU	83.333	72	12	0	1	72	1	72	4.08e-38	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164620	G7L638	100.000	72	0	0	1	72	1	72	3.51e-44	145

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0143230	Msa1164620	0.912934	1.102036e-83	-8.615850e-47
Msa0604960	Msa1164620	0.804701	1.903772e-49	-8.615850e-47
Msa1125500	Msa1164620	0.873138	1.854966e-67	-8.615850e-47
Msa1125580	Msa1164620	0.883281	5.123409e-71	-8.615850e-47
Msa1164620	Msa1386200	0.861684	8.630047e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164620	MtrunA17_Chr7g0266271	100.000	72	0	0	1	72	1	72	6.76e-48	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164620	AT3G52730.1	80.556	72	14	0	1	72	1	72	7.42e-39	123
Msa1164620	AT3G52730.2	76.786	56	13	0	1	56	1	56	1.07e-26	92.8

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Find 39 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACCGGCGATGACGA+AGG	0.627325	7_4:+56330431	None:intergenic
AAGAAGAGGAGGAGGCGTTT+TGG	0.335531	7_4:-56330499	Msa1164620:CDS
AATATAATAAAACTTCAAAA+TGG	0.380237	7_4:+56328069	None:intergenic
ACATTTCTGTGCTGGGGCAA+AGG	0.516213	7_4:-56328128	Msa1164620:CDS
ACATTTGAGAACGGTGAAAA+GGG	0.519176	7_4:-56330607	Msa1164620:five_prime_UTR
AGGTAACATAGACAGAGTTG+CGG	0.713031	7_4:+56330451	None:intergenic
ATATGAAGACATTTCTGTGC+TGG	0.485619	7_4:-56328136	Msa1164620:CDS
ATATGATTTATCCCAAATAC+TGG	0.293371	7_4:-56327887	Msa1164620:three_prime_UTR
ATATGATTTATCCCAAATAC+TGG	0.346156	7_4:-56327827	Msa1164620:three_prime_UTR
ATGAAACCATACATGACTTA+AGG	0.434265	7_4:+56327969	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGGGAAATAAATAATGTTG+GGG	-	chr7_4:56328136-56328155	Msa1164620:CDS	30.0%
TCGATAGATTAAGCATAAAG+TGG	+	chr7_4:56328175-56328194	None:intergenic	30.0%
ATATAACAGACAACTGTGTA+AGG	-	chr7_4:56328615-56328634	Msa1164620:intron	30.0%
AGGAATCCACAATGAATAAT+AGG	+	chr7_4:56328668-56328687	None:intergenic	30.0%
TGGATTCCTATTATTCATTG+TGG	-	chr7_4:56328679-56328698	Msa1164620:intron	30.0%
AAGAAATAGAAGACATTGAG+AGG	-	chr7_4:56328807-56328826	Msa1164620:intron	30.0%
AATAAAAAATCCCCCTCATT+TGG	-	chr7_4:56328861-56328880	Msa1164620:intron	30.0%
ATAAAAAATCCCCCTCATTT+GGG	-	chr7_4:56328862-56328881	Msa1164620:intron	30.0%
GGGAACTCAAAAATTGTATT+GGG	-	chr7_4:56328884-56328903	Msa1164620:intron	30.0%
GGAACTCAAAAATTGTATTG+GGG	-	chr7_4:56328885-56328904	Msa1164620:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	56327770	56330669	56327770	ID=Msa1164620;Name=Msa1164620
chr7_4	mRNA	56327770	56330669	56327770	ID=Msa1164620-mRNA-1;Parent=Msa1164620;Name=Msa1164620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=131\|1\|1\|1\|1\|1\|3\|343\|72
chr7_4	exon	56327770	56328163	56327770	ID=Msa1164620-mRNA-1:exon:16795;Parent=Msa1164620-mRNA-1
chr7_4	exon	56330282	56330329	56330282	ID=Msa1164620-mRNA-1:exon:16794;Parent=Msa1164620-mRNA-1
chr7_4	exon	56330419	56330669	56330419	ID=Msa1164620-mRNA-1:exon:16793;Parent=Msa1164620-mRNA-1
chr7_4	five_prime_UTR	56330539	56330669	56330539	ID=Msa1164620-mRNA-1:five_prime_utr;Parent=Msa1164620-mRNA-1
chr7_4	CDS	56330419	56330538	56330419	ID=Msa1164620-mRNA-1:cds;Parent=Msa1164620-mRNA-1
chr7_4	CDS	56330282	56330329	56330282	ID=Msa1164620-mRNA-1:cds;Parent=Msa1164620-mRNA-1
chr7_4	CDS	56328113	56328163	56328113	ID=Msa1164620-mRNA-1:cds;Parent=Msa1164620-mRNA-1
chr7_4	three_prime_UTR	56327770	56328112	56327770	ID=Msa1164620-mRNA-1:three_prime_utr;Parent=Msa1164620-mRNA-1

Gene Sequence	>Msa1164620 ATGGAATCCGCTGCTAAAAGAAGAGGAGGAGGCGTTTTGGAAGGCCTTTACAAGGTTCTTATGCGCCGCAACTCTGTCTATGTTACCTTCGTCATCGCCGGTGCTTTTCTCGGTGAACGGGCTGTGGATTACGGTGTTCACAAGCTCTGGGAAATAAATAATGTTGGGAAACGATATGAAGACATTTCTGTGCTGGGGCAAAGGCCGGTAGACGAGTGA
Protein sequence	>Msa1164620 MESAAKRRGGGVLEGLYKVLMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEINNVGKRYEDISVLGQRPVDE*