Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330530 | KEH31790.1 | 96.181 | 576 | 22 | 0 | 88 | 663 | 1 | 576 | 0.0 | 1138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330530 | sp|Q8VY13|FRO8_ARATH | 50.571 | 613 | 272 | 12 | 74 | 663 | 124 | 728 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330530 | A0A072V0Z7 | 96.181 | 576 | 22 | 0 | 88 | 663 | 1 | 576 | 0.0 | 1138 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa1330530 | -0.805046 | 1.612306e-49 | -8.615850e-47 |
| Msa0042510 | Msa1330530 | -0.804277 | 2.333096e-49 | -8.615850e-47 |
| Msa0053480 | Msa1330530 | 0.800093 | 1.694332e-48 | -8.615850e-47 |
| Msa0077390 | Msa1330530 | 0.824220 | 9.080751e-54 | -8.615850e-47 |
| Msa0078370 | Msa1330530 | 0.811398 | 7.141731e-51 | -8.615850e-47 |
| Msa0089150 | Msa1330530 | -0.836149 | 1.108222e-56 | -8.615850e-47 |
| Msa0090280 | Msa1330530 | -0.801112 | 1.050101e-48 | -8.615850e-47 |
| Msa0093440 | Msa1330530 | 0.832991 | 6.890693e-56 | -8.615850e-47 |
| Msa0612840 | Msa1330530 | -0.807045 | 6.123903e-50 | -8.615850e-47 |
| Msa0621170 | Msa1330530 | -0.813713 | 2.226543e-51 | -8.615850e-47 |
| Msa0621190 | Msa1330530 | -0.823534 | 1.315549e-53 | -8.615850e-47 |
| Msa0641020 | Msa1330530 | 0.884636 | 1.619096e-71 | -8.615850e-47 |
| Msa0641030 | Msa1330530 | 0.862150 | 6.214634e-64 | -8.615850e-47 |
| Msa0660870 | Msa1330530 | 0.835034 | 2.121677e-56 | -8.615850e-47 |
| Msa0679560 | Msa1330530 | 0.880525 | 5.111482e-70 | -8.615850e-47 |
| Msa0700370 | Msa1330530 | -0.818086 | 2.354568e-52 | -8.615850e-47 |
| Msa0716750 | Msa1330530 | 0.811553 | 6.609394e-51 | -8.615850e-47 |
| Msa0723320 | Msa1330530 | 0.801719 | 7.883576e-49 | -8.615850e-47 |
| Msa0723430 | Msa1330530 | 0.801182 | 1.015878e-48 | -8.615850e-47 |
| Msa0739410 | Msa1330530 | 0.805288 | 1.434932e-49 | -8.615850e-47 |
| Msa0757980 | Msa1330530 | 0.828429 | 9.032949e-55 | -8.615850e-47 |
| Msa0776030 | Msa1330530 | 0.828039 | 1.121730e-54 | -8.615850e-47 |
| Msa0799280 | Msa1330530 | 0.829520 | 4.917952e-55 | -8.615850e-47 |
| Msa0839230 | Msa1330530 | 0.834697 | 2.580263e-56 | -8.615850e-47 |
| Msa0141680 | Msa1330530 | 0.812004 | 5.272504e-51 | -8.615850e-47 |
| Msa0144560 | Msa1330530 | 0.800709 | 1.269280e-48 | -8.615850e-47 |
| Msa0146910 | Msa1330530 | -0.805448 | 1.328328e-49 | -8.615850e-47 |
| Msa0164830 | Msa1330530 | 0.817261 | 3.614994e-52 | -8.615850e-47 |
| Msa0201330 | Msa1330530 | 0.813799 | 2.131472e-51 | -8.615850e-47 |
| Msa0204210 | Msa1330530 | 0.801122 | 1.045006e-48 | -8.615850e-47 |
| Msa0225370 | Msa1330530 | 0.822134 | 2.786901e-53 | -8.615850e-47 |
| Msa0227800 | Msa1330530 | 0.816742 | 4.726495e-52 | -8.615850e-47 |
| Msa1232330 | Msa1330530 | 0.800867 | 1.178285e-48 | -8.615850e-47 |
| Msa1244300 | Msa1330530 | 0.835365 | 1.751187e-56 | -8.615850e-47 |
| Msa1246040 | Msa1330530 | 0.979758 | 1.123857e-148 | -8.615850e-47 |
| Msa1275340 | Msa1330530 | 0.801809 | 7.557238e-49 | -8.615850e-47 |
| Msa1298910 | Msa1330530 | 0.993285 | 1.097416e-198 | -8.615850e-47 |
| Msa1330530 | Msa1348500 | 0.808570 | 2.902646e-50 | -8.615850e-47 |
| Msa1330530 | Msa1375800 | 0.821335 | 4.265142e-53 | -8.615850e-47 |
| Msa1330530 | Msa1387750 | -0.830219 | 3.321423e-55 | -8.615850e-47 |
| Msa1330530 | Msa1445250 | 0.890258 | 1.158685e-73 | -8.615850e-47 |
| Msa1330530 | Msa1457020 | 0.818996 | 1.464077e-52 | -8.615850e-47 |
| Msa1330530 | Msa1457070 | 0.830552 | 2.753297e-55 | -8.615850e-47 |
| Msa1330530 | Msa1466810 | 0.809499 | 1.835821e-50 | -8.615850e-47 |
| Msa0365360 | Msa1330530 | 0.818398 | 2.001432e-52 | -8.615850e-47 |
| Msa0370480 | Msa1330530 | 0.874616 | 5.875480e-68 | -8.615850e-47 |
| Msa0382670 | Msa1330530 | -0.800565 | 1.357816e-48 | -8.615850e-47 |
| Msa0416470 | Msa1330530 | -0.825121 | 5.569913e-54 | -8.615850e-47 |
| Msa0426820 | Msa1330530 | -0.815047 | 1.129200e-51 | -8.615850e-47 |
| Msa0431250 | Msa1330530 | 0.804102 | 2.538070e-49 | -8.615850e-47 |
| Msa0439700 | Msa1330530 | 0.817857 | 2.652552e-52 | -8.615850e-47 |
| Msa0440040 | Msa1330530 | 0.846068 | 2.740014e-59 | -8.615850e-47 |
| Msa0452680 | Msa1330530 | 0.823742 | 1.175748e-53 | -8.615850e-47 |
| Msa0457370 | Msa1330530 | 0.860680 | 1.744869e-63 | -8.615850e-47 |
| Msa0467740 | Msa1330530 | -0.835516 | 1.603372e-56 | -8.615850e-47 |
| Msa0470230 | Msa1330530 | -0.811471 | 6.887704e-51 | -8.615850e-47 |
| Msa0998890 | Msa1330530 | -0.850110 | 2.099138e-60 | -8.615850e-47 |
| Msa1001210 | Msa1330530 | 0.829013 | 6.528127e-55 | -8.615850e-47 |
| Msa1008340 | Msa1330530 | 0.828863 | 7.097349e-55 | -8.615850e-47 |
| Msa1027280 | Msa1330530 | 0.822679 | 2.082567e-53 | -8.615850e-47 |
| Msa1068310 | Msa1330530 | -0.800735 | 1.253605e-48 | -8.615850e-47 |
| Msa1075760 | Msa1330530 | 0.808643 | 2.800261e-50 | -8.615850e-47 |
| Msa1080790 | Msa1330530 | 0.802156 | 6.413142e-49 | -8.615850e-47 |
| Msa1083410 | Msa1330530 | 0.822761 | 1.992621e-53 | -8.615850e-47 |
| Msa0241580 | Msa1330530 | 0.815968 | 7.044568e-52 | -8.615850e-47 |
| Msa0243910 | Msa1330530 | 0.807800 | 4.235553e-50 | -8.615850e-47 |
| Msa0243930 | Msa1330530 | 0.807916 | 3.999936e-50 | -8.615850e-47 |
| Msa0261260 | Msa1330530 | 0.830698 | 2.536795e-55 | -8.615850e-47 |
| Msa0264370 | Msa1330530 | 0.833077 | 6.559710e-56 | -8.615850e-47 |
| Msa0266380 | Msa1330530 | 0.809461 | 1.870362e-50 | -8.615850e-47 |
| Msa0279490 | Msa1330530 | 0.811853 | 5.686114e-51 | -8.615850e-47 |
| Msa0282590 | Msa1330530 | 0.820976 | 5.160857e-53 | -8.615850e-47 |
| Msa0299200 | Msa1330530 | 0.825215 | 5.292006e-54 | -8.615850e-47 |
| Msa0304270 | Msa1330530 | -0.803107 | 4.082347e-49 | -8.615850e-47 |
| Msa0304990 | Msa1330530 | 0.819550 | 1.094802e-52 | -8.615850e-47 |
| Msa0307510 | Msa1330530 | 0.868222 | 7.664113e-66 | -8.615850e-47 |
| Msa0330670 | Msa1330530 | 0.801996 | 6.916621e-49 | -8.615850e-47 |
| Msa0334170 | Msa1330530 | 0.824583 | 7.463163e-54 | -8.615850e-47 |
| Msa1139240 | Msa1330530 | 0.833635 | 4.762982e-56 | -8.615850e-47 |
| Msa1165700 | Msa1330530 | -0.807059 | 6.080831e-50 | -8.615850e-47 |
| Msa1190460 | Msa1330530 | 0.822768 | 1.984803e-53 | -8.615850e-47 |
| Msa1208760 | Msa1330530 | 0.845691 | 3.467171e-59 | -8.615850e-47 |
| Msa1209560 | Msa1330530 | 0.977742 | 2.160544e-144 | -8.615850e-47 |
| Msa1209570 | Msa1330530 | 0.802683 | 4.994750e-49 | -8.615850e-47 |
| Msa0514130 | Msa1330530 | -0.827867 | 1.234013e-54 | -8.615850e-47 |
| Msa0528970 | Msa1330530 | 0.805855 | 1.091338e-49 | -8.615850e-47 |
| Msa0544930 | Msa1330530 | 0.867639 | 1.179795e-65 | -8.615850e-47 |
| Msa0575540 | Msa1330530 | 0.808569 | 2.903859e-50 | -8.615850e-47 |
| Msa0884890 | Msa1330530 | 0.828676 | 7.874967e-55 | -8.615850e-47 |
| Msa0885320 | Msa1330530 | 0.822699 | 2.060356e-53 | -8.615850e-47 |
| Msa0886660 | Msa1330530 | 0.809100 | 2.235835e-50 | -8.615850e-47 |
| Msa0900200 | Msa1330530 | 0.806128 | 9.559120e-50 | -8.615850e-47 |
| Msa0912160 | Msa1330530 | 0.804436 | 2.162722e-49 | -8.615850e-47 |
| Msa0912200 | Msa1330530 | 0.807963 | 3.909225e-50 | -8.615850e-47 |
| Msa0912210 | Msa1330530 | 0.812447 | 4.221013e-51 | -8.615850e-47 |
| Msa0912230 | Msa1330530 | 0.820843 | 5.535570e-53 | -8.615850e-47 |
| Msa0912470 | Msa1330530 | 0.879355 | 1.333711e-69 | -8.615850e-47 |
| Msa0921220 | Msa1330530 | 0.817712 | 2.861181e-52 | -8.615850e-47 |
| Msa0951720 | Msa1330530 | 0.804350 | 2.253356e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330530 | MtrunA17_Chr4g0058571 | 96.128 | 594 | 23 | 0 | 70 | 663 | 137 | 730 | 0.0 | 1134 |
| Msa1330530 | MtrunA17_Chr1g0202741 | 34.305 | 583 | 340 | 15 | 72 | 636 | 128 | 685 | 2.65e-103 | 330 |
| Msa1330530 | MtrunA17_Chr1g0202731 | 33.045 | 578 | 354 | 15 | 72 | 636 | 133 | 690 | 6.42e-98 | 315 |
| Msa1330530 | MtrunA17_Chr8g0348521 | 33.277 | 592 | 340 | 13 | 71 | 638 | 126 | 686 | 6.04e-91 | 297 |
| Msa1330530 | MtrunA17_Chr8g0348531 | 38.462 | 429 | 244 | 9 | 71 | 492 | 138 | 553 | 1.79e-87 | 288 |
| Msa1330530 | MtrunA17_Chr2g0291481 | 31.546 | 634 | 397 | 14 | 48 | 663 | 126 | 740 | 8.51e-84 | 279 |
| Msa1330530 | MtrunA17_Chr8g0349071 | 43.273 | 275 | 147 | 5 | 180 | 451 | 4 | 272 | 1.78e-62 | 209 |
| Msa1330530 | MtrunA17_Chr4g0061441 | 26.074 | 326 | 188 | 12 | 117 | 395 | 349 | 668 | 1.02e-23 | 106 |
| Msa1330530 | MtrunA17_Chr8g0387591 | 23.377 | 385 | 230 | 11 | 117 | 443 | 430 | 807 | 3.40e-20 | 95.5 |
| Msa1330530 | MtrunA17_Chr3g0131361 | 25.852 | 352 | 185 | 13 | 117 | 395 | 386 | 734 | 7.42e-20 | 94.7 |
| Msa1330530 | MtrunA17_Chr1g0192121 | 24.047 | 341 | 194 | 10 | 117 | 395 | 381 | 718 | 8.20e-20 | 94.4 |
| Msa1330530 | MtrunA17_Chr3g0131401 | 24.412 | 340 | 193 | 11 | 117 | 395 | 412 | 748 | 3.85e-19 | 92.4 |
| Msa1330530 | MtrunA17_Chr8g0385411 | 23.256 | 344 | 192 | 12 | 117 | 395 | 391 | 727 | 7.88e-18 | 88.2 |
| Msa1330530 | MtrunA17_Chr3g0131381 | 22.841 | 359 | 194 | 11 | 117 | 395 | 387 | 742 | 7.67e-17 | 84.7 |
| Msa1330530 | MtrunA17_Chr7g0272591 | 24.335 | 263 | 156 | 7 | 172 | 395 | 472 | 730 | 8.53e-17 | 84.7 |
| Msa1330530 | MtrunA17_Chr4g0059001 | 92.157 | 51 | 4 | 0 | 19 | 69 | 61 | 111 | 9.41e-17 | 80.9 |
| Msa1330530 | MtrunA17_Chr2g0301511 | 25.439 | 342 | 191 | 14 | 117 | 399 | 420 | 756 | 2.35e-15 | 80.1 |
| Msa1330530 | MtrunA17_Chr2g0283421 | 43.529 | 85 | 29 | 2 | 3 | 68 | 5 | 89 | 2.87e-12 | 67.4 |
| Msa1330530 | MtrunA17_Chr2g0283411 | 42.529 | 87 | 29 | 2 | 3 | 68 | 4 | 90 | 2.87e-12 | 67.0 |
| Msa1330530 | MtrunA17_Chr7g0238371 | 26.484 | 219 | 122 | 7 | 213 | 395 | 469 | 684 | 1.05e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330530 | AT5G50160.1 | 50.571 | 613 | 272 | 12 | 74 | 663 | 124 | 728 | 0.0 | 609 |
| Msa1330530 | AT5G50160.2 | 48.294 | 557 | 257 | 12 | 130 | 663 | 1 | 549 | 2.28e-178 | 518 |
| Msa1330530 | AT1G23020.4 | 37.209 | 559 | 293 | 13 | 96 | 637 | 160 | 677 | 1.33e-112 | 354 |
| Msa1330530 | AT1G23020.3 | 37.209 | 559 | 293 | 13 | 96 | 637 | 160 | 677 | 1.33e-112 | 354 |
| Msa1330530 | AT1G23020.7 | 37.209 | 559 | 293 | 13 | 96 | 637 | 157 | 674 | 1.70e-112 | 353 |
| Msa1330530 | AT1G23020.6 | 37.209 | 559 | 293 | 13 | 96 | 637 | 161 | 678 | 1.77e-112 | 354 |
| Msa1330530 | AT1G23020.2 | 37.209 | 559 | 293 | 13 | 96 | 637 | 184 | 701 | 1.99e-112 | 354 |
| Msa1330530 | AT1G23020.1 | 37.209 | 559 | 293 | 13 | 96 | 637 | 183 | 700 | 2.87e-112 | 354 |
| Msa1330530 | AT1G23020.5 | 37.209 | 559 | 293 | 13 | 96 | 637 | 183 | 700 | 2.87e-112 | 354 |
| Msa1330530 | AT1G01590.1 | 36.248 | 549 | 323 | 10 | 96 | 637 | 160 | 688 | 5.03e-112 | 353 |
| Msa1330530 | AT1G01580.1 | 33.118 | 619 | 362 | 17 | 45 | 638 | 119 | 710 | 1.35e-102 | 329 |
| Msa1330530 | AT1G01580.2 | 33.107 | 589 | 352 | 15 | 71 | 638 | 221 | 788 | 6.47e-102 | 329 |
| Msa1330530 | AT5G23980.1 | 33.447 | 586 | 350 | 15 | 72 | 638 | 120 | 684 | 1.54e-98 | 317 |
| Msa1330530 | AT5G23990.3 | 34.046 | 561 | 329 | 16 | 98 | 638 | 13 | 552 | 3.54e-96 | 307 |
| Msa1330530 | AT5G23990.2 | 34.164 | 562 | 329 | 16 | 97 | 638 | 144 | 684 | 1.81e-95 | 309 |
| Msa1330530 | AT5G23990.1 | 32.977 | 561 | 329 | 15 | 101 | 638 | 106 | 642 | 6.02e-93 | 301 |
| Msa1330530 | AT5G49740.1 | 30.442 | 634 | 395 | 13 | 58 | 663 | 132 | 747 | 5.67e-84 | 280 |
| Msa1330530 | AT5G49730.1 | 30.222 | 632 | 399 | 13 | 58 | 663 | 123 | 738 | 3.06e-82 | 275 |
| Msa1330530 | AT5G49740.3 | 30.903 | 576 | 356 | 12 | 58 | 605 | 132 | 693 | 1.09e-74 | 254 |
| Msa1330530 | AT5G49740.2 | 35.194 | 412 | 245 | 5 | 58 | 451 | 132 | 539 | 4.64e-74 | 248 |
| Msa1330530 | AT5G49730.2 | 34.963 | 409 | 250 | 5 | 58 | 451 | 123 | 530 | 2.00e-72 | 244 |
| Msa1330530 | AT5G62930.1 | 54.369 | 103 | 32 | 1 | 2 | 89 | 1 | 103 | 3.60e-27 | 110 |
| Msa1330530 | AT5G62930.2 | 54.369 | 103 | 32 | 1 | 2 | 89 | 27 | 129 | 8.49e-27 | 110 |
| Msa1330530 | AT4G25090.1 | 24.225 | 355 | 198 | 11 | 117 | 409 | 352 | 697 | 2.40e-22 | 102 |
| Msa1330530 | AT5G51060.1 | 25.073 | 343 | 188 | 12 | 117 | 395 | 400 | 737 | 2.61e-22 | 102 |
| Msa1330530 | AT4G25090.2 | 24.225 | 355 | 198 | 11 | 117 | 409 | 340 | 685 | 2.63e-22 | 102 |
| Msa1330530 | AT1G09090.2 | 24.355 | 349 | 198 | 11 | 117 | 402 | 346 | 691 | 2.24e-21 | 99.8 |
| Msa1330530 | AT5G47910.1 | 26.989 | 352 | 187 | 14 | 117 | 407 | 425 | 767 | 1.37e-20 | 97.4 |
| Msa1330530 | AT1G19230.1 | 29.630 | 216 | 123 | 6 | 206 | 395 | 536 | 748 | 7.72e-20 | 95.1 |
| Msa1330530 | AT1G19230.2 | 29.630 | 216 | 123 | 6 | 206 | 395 | 562 | 774 | 8.43e-20 | 94.7 |
| Msa1330530 | AT1G64060.1 | 27.103 | 214 | 129 | 6 | 206 | 395 | 558 | 768 | 1.55e-18 | 90.9 |
| Msa1330530 | AT5G07390.1 | 28.910 | 211 | 119 | 7 | 213 | 395 | 522 | 729 | 7.75e-17 | 85.5 |
| Msa1330530 | AT5G07390.2 | 28.910 | 211 | 119 | 7 | 213 | 395 | 490 | 697 | 7.86e-17 | 85.1 |
| Msa1330530 | AT4G11230.1 | 24.107 | 336 | 195 | 11 | 117 | 395 | 423 | 755 | 1.95e-15 | 80.9 |
| Msa1330530 | AT5G45920.2 | 45.349 | 86 | 29 | 2 | 1 | 68 | 1 | 86 | 3.76e-15 | 75.1 |
| Msa1330530 | AT5G45920.3 | 45.349 | 86 | 29 | 2 | 1 | 68 | 1 | 86 | 3.76e-15 | 75.1 |
| Msa1330530 | AT5G45920.1 | 45.349 | 86 | 29 | 2 | 1 | 68 | 1 | 86 | 7.50e-15 | 75.1 |
| Msa1330530 | AT5G45920.4 | 45.349 | 86 | 29 | 2 | 1 | 68 | 1 | 86 | 7.50e-15 | 75.1 |
| Msa1330530 | AT1G09090.1 | 24.254 | 268 | 153 | 9 | 117 | 337 | 346 | 610 | 1.31e-12 | 71.2 |
| Msa1330530 | AT3G45810.1 | 26.432 | 227 | 129 | 6 | 205 | 395 | 497 | 721 | 1.26e-11 | 68.6 |
Find 132 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTTTCTTCTTCTAATT+TGG | 0.027502 | 8_4:+49723044 | None:intergenic |
| CGCCAGCACTTTGTTTGTTT+GGG | 0.192217 | 8_4:-49723539 | Msa1330530:CDS |
| ACACTTTAGTAGTCTAAATT+TGG | 0.194761 | 8_4:-49721423 | Msa1330530:exon |
| CAAGAGTTGTATTGGTATTT+AGG | 0.198094 | 8_4:+49721400 | None:intergenic |
| AAACTTTCTTCTTCTAATTT+GGG | 0.215669 | 8_4:+49723045 | None:intergenic |
| GTTTGGATGGCTGCTATTAC+TGG | 0.223975 | 8_4:-49722033 | Msa1330530:CDS |
| GAAGAACATGAAGTTCATTT+TGG | 0.229533 | 8_4:-49721727 | Msa1330530:CDS |
| GCCATCCAAACTGGACTTTC+AGG | 0.231763 | 8_4:+49722045 | None:intergenic |
| TCCATATGCTGCATAATAAT+TGG | 0.232641 | 8_4:+49722068 | None:intergenic |
| GGAGGCAGGCCTAACTTTAA+AGG | 0.237785 | 8_4:-49721706 | Msa1330530:intron |
| GCGCCAGCACTTTGTTTGTT+TGG | 0.246543 | 8_4:-49723540 | Msa1330530:CDS |
| AGAGGTGGTTTAGTTGATTC+TGG | 0.261179 | 8_4:+49724105 | None:intergenic |
| AACTCCATTTCTGAGCATTT+TGG | 0.264485 | 8_4:-49722340 | Msa1330530:CDS |
| CCAAAGAAAAGACTCCTTCT+TGG | 0.273461 | 8_4:-49721930 | Msa1330530:CDS |
| TTGGCTGTATTTCGTATATT+TGG | 0.274271 | 8_4:-49723637 | Msa1330530:CDS |
| TTGATTTGAACAGATATATT+AGG | 0.280035 | 8_4:-49721609 | Msa1330530:intron |
| ACAGCCAACCCTCTTAAAAT+TGG | 0.296428 | 8_4:+49723652 | None:intergenic |
| TAAACAAAGGTGCTGATAAA+AGG | 0.299046 | 8_4:-49722535 | Msa1330530:CDS |
| CAGACATGACAGTGTGATTA+TGG | 0.308804 | 8_4:-49722382 | Msa1330530:CDS |
| TCCAATTATTATGCAGCATA+TGG | 0.312731 | 8_4:-49722069 | Msa1330530:CDS |
| AATTTAGTACTTGGATCTTT+AGG | 0.315372 | 8_4:+49722818 | None:intergenic |
| GTCTGTGGAACGCCTTTCTT+AGG | 0.318947 | 8_4:+49721808 | None:intergenic |
| ATGGAATTACCTTTAAAGTT+AGG | 0.331214 | 8_4:+49721697 | None:intergenic |
| TTCAAATATATAACACTTGT+AGG | 0.341605 | 8_4:+49722698 | None:intergenic |
| GACCTACCTCACTTTGTATA+TGG | 0.342928 | 8_4:+49723506 | None:intergenic |
| TTTCAGATGGAACTATAGTA+TGG | 0.345437 | 8_4:+49721968 | None:intergenic |
| TTTGTTAGCAGAAGCTTGTT+TGG | 0.351150 | 8_4:-49723689 | Msa1330530:CDS |
| TGGATCTGATATTGGAGTTT+TGG | 0.352657 | 8_4:-49721565 | Msa1330530:CDS |
| AGAGAAAACATAGTGTTGTT+TGG | 0.363634 | 8_4:-49724397 | Msa1330530:CDS |
| GAATCTGAGTGTTTGAAGTT+AGG | 0.378131 | 8_4:-49721492 | Msa1330530:CDS |
| GCTAACGATGCTGCTTTGTT+CGG | 0.383973 | 8_4:-49724060 | Msa1330530:CDS |
| ACAGTTTGTCAAGGCTAAAA+AGG | 0.388275 | 8_4:+49722921 | None:intergenic |
| CATGATGTTCTCATCAGCTT+TGG | 0.389412 | 8_4:+49722622 | None:intergenic |
| ACAACTAAGCGTGGGAATTA+CGG | 0.389449 | 8_4:-49722145 | Msa1330530:CDS |
| AATGAACTTCATGTTCTTCA+AGG | 0.391345 | 8_4:+49721731 | None:intergenic |
| GTAATAGCAGCCATCCAAAC+TGG | 0.395706 | 8_4:+49722036 | None:intergenic |
| CTTAGAATAGCAACAAGGTT+TGG | 0.405833 | 8_4:-49723712 | Msa1330530:CDS |
| TGTACAAGTTGTATCCTTGA+TGG | 0.413043 | 8_4:+49722282 | None:intergenic |
| AATTAGCTCCACAGCTTCAC+AGG | 0.423110 | 8_4:+49722844 | None:intergenic |
| ACTGATTCCTTCATGCTCTC+AGG | 0.423606 | 8_4:+49721534 | None:intergenic |
| CTACATTATTTGTGGTGCTC+TGG | 0.430461 | 8_4:+49721300 | None:intergenic |
| TGGGGATAAGCACTTCTATA+TGG | 0.435559 | 8_4:-49722960 | Msa1330530:CDS |
| GATGGAGAAGGTTGAAGAAA+GGG | 0.435831 | 8_4:-49721834 | Msa1330530:CDS |
| TTCTTAGTTTCAGCTGACCT+TGG | 0.437129 | 8_4:+49721757 | None:intergenic |
| GGGGAGATTACACTTGTTGC+CGG | 0.437985 | 8_4:-49723094 | Msa1330530:CDS |
| ACAGGACGTATATACCTTGC+TGG | 0.440780 | 8_4:-49723115 | Msa1330530:CDS |
| TCTGCCAAAATGCTCAGAAA+TGG | 0.441657 | 8_4:+49722336 | None:intergenic |
| AAAGACTCCTTCTTGGATAG+TGG | 0.442694 | 8_4:-49721923 | Msa1330530:CDS |
| AGATGGAGAAGGTTGAAGAA+AGG | 0.445970 | 8_4:-49721835 | Msa1330530:CDS |
| ATTCTGGAGGGAAGAGATGA+TGG | 0.446898 | 8_4:+49724121 | None:intergenic |
| TTTAAATAGTCTAATGAAGC+AGG | 0.448724 | 8_4:+49722476 | None:intergenic |
| GAAGCGTGTGGATCTGATAT+TGG | 0.448770 | 8_4:-49721573 | Msa1330530:CDS |
| CTGAACAGCAAGAGTTGTAT+TGG | 0.448850 | 8_4:+49721392 | None:intergenic |
| AACTTGTACATGTCATTAAG+AGG | 0.459864 | 8_4:-49722269 | Msa1330530:CDS |
| ATTATGGTTGCTGGAGGTAG+TGG | 0.462206 | 8_4:-49722366 | Msa1330530:CDS |
| GACAGTGTGATTATGGTTGC+TGG | 0.463898 | 8_4:-49722375 | Msa1330530:CDS |
| GATATACTTGTTCGTGGCTA+TGG | 0.466209 | 8_4:-49724177 | Msa1330530:CDS |
| ATGGTGGATACAACACTAGA+TGG | 0.467016 | 8_4:-49724158 | Msa1330530:CDS |
| GGTATACCTGTTGCAATTGA+AGG | 0.469135 | 8_4:-49722509 | Msa1330530:CDS |
| ATTATATATGATTCTACACT+TGG | 0.476217 | 8_4:+49721342 | None:intergenic |
| TATCATGTCATAAAGAGTAT+TGG | 0.480329 | 8_4:+49722568 | None:intergenic |
| GTTAAGTATCACACATGGAT+TGG | 0.480350 | 8_4:-49723595 | Msa1330530:CDS |
| TAGTATGGTTGAAACAGATT+AGG | 0.480827 | 8_4:+49721983 | None:intergenic |
| ATGGACCTGAAAGTCCAGTT+TGG | 0.481479 | 8_4:-49722050 | Msa1330530:CDS |
| TAGGGCCCTTCAATTGCAAC+AGG | 0.481704 | 8_4:+49722503 | None:intergenic |
| GTTGTTTGGAGATTCATTAA+CGG | 0.482154 | 8_4:-49724383 | Msa1330530:CDS |
| TCAGCTGACCTTGGATCAAA+GGG | 0.483472 | 8_4:+49721766 | None:intergenic |
| TTCAGCTGACCTTGGATCAA+AGG | 0.487298 | 8_4:+49721765 | None:intergenic |
| CAACTATATCTCATCTTCAA+TGG | 0.489902 | 8_4:-49722670 | Msa1330530:CDS |
| CAGGCTGATATACTTGTTCG+TGG | 0.490934 | 8_4:-49724183 | Msa1330530:CDS |
| TAGGAAAATAAGAAAAGTGA+TGG | 0.497785 | 8_4:+49722002 | None:intergenic |
| TGATTAAATGTCAAGGGTGG+TGG | 0.504355 | 8_4:-49722592 | Msa1330530:CDS |
| GTTGCAATTGAAGGGCCCTA+TGG | 0.513882 | 8_4:-49722500 | Msa1330530:CDS |
| CACTTCTATATGGTCTTCCC+AGG | 0.515363 | 8_4:-49722950 | Msa1330530:CDS |
| CAGGACGTATATACCTTGCT+GGG | 0.524995 | 8_4:-49723114 | Msa1330530:CDS |
| AAATTAAACCCTTTGATCCA+AGG | 0.534507 | 8_4:-49721774 | Msa1330530:CDS |
| TCAAATATATAACACTTGTA+GGG | 0.536178 | 8_4:+49722699 | None:intergenic |
| GTCTAATGAAGCAGGTCCAT+AGG | 0.538097 | 8_4:+49722484 | None:intergenic |
| AACTTTCTTCTTCTAATTTG+GGG | 0.542459 | 8_4:+49723046 | None:intergenic |
| ATGAACTTCATGTTCTTCAA+GGG | 0.543742 | 8_4:+49721732 | None:intergenic |
| TATGTGAACTACATTATTTG+TGG | 0.545711 | 8_4:+49721292 | None:intergenic |
| TGATAGCAATTGTGTTGAGA+TGG | 0.546274 | 8_4:-49721852 | Msa1330530:CDS |
| ACCCCAAACAAACAAAGTGC+TGG | 0.548647 | 8_4:+49723537 | None:intergenic |
| ATTTGGAAGTGGCAAAAGAC+AGG | 0.548862 | 8_4:-49723133 | Msa1330530:CDS |
| TCTAATGAAGCAGGTCCATA+GGG | 0.551514 | 8_4:+49722485 | None:intergenic |
| AATTCTAGCTGAAACCATGC+AGG | 0.558194 | 8_4:+49722871 | None:intergenic |
| GTGGTTTAGTTGATTCTGGA+GGG | 0.558691 | 8_4:+49724109 | None:intergenic |
| CGTTCCACAGACATCGCAGA+TGG | 0.560042 | 8_4:-49721797 | Msa1330530:CDS |
| AGTAGATCCACTATCCAAGA+AGG | 0.560330 | 8_4:+49721916 | None:intergenic |
| TTGTTAAACAGATTTGGAAG+TGG | 0.560851 | 8_4:-49723144 | Msa1330530:intron |
| AAGAAAATTGCTGTAGCAAG+AGG | 0.561552 | 8_4:+49724087 | None:intergenic |
| CATTGAAGATGAGATATAGT+TGG | 0.565837 | 8_4:+49722671 | None:intergenic |
| ATTTCCATCTGCGATGTCTG+TGG | 0.573154 | 8_4:+49721793 | None:intergenic |
| AAGAAAGGGATTCCTAAGAA+AGG | 0.575794 | 8_4:-49721820 | Msa1330530:CDS |
| ATACAACTCTTGCTGTTCAG+TGG | 0.579378 | 8_4:-49721389 | Msa1330530:three_prime_UTR |
| TCTTCTAATTTGGGGAAGTG+AGG | 0.582585 | 8_4:+49723054 | None:intergenic |
| GATTCTACACTTGGGAGTGA+AGG | 0.587916 | 8_4:+49721351 | None:intergenic |
| AAAATTGCTGTAGCAAGAGG+TGG | 0.588674 | 8_4:+49724090 | None:intergenic |
| GCCAGCACTTTGTTTGTTTG+GGG | 0.590787 | 8_4:-49723538 | Msa1330530:CDS |
| GGTGGTTTAGTTGATTCTGG+AGG | 0.593185 | 8_4:+49724108 | None:intergenic |
| TGGATGGCTGCTATTACTGG+AGG | 0.596455 | 8_4:-49722030 | Msa1330530:CDS |
| GTATACCTGTTGCAATTGAA+GGG | 0.597798 | 8_4:-49722508 | Msa1330530:CDS |
| AGAGAGTGAAGAGTGAAGCA+TGG | 0.598825 | 8_4:+49721453 | None:intergenic |
| ACAAGAAACACAACTAAGCG+TGG | 0.598890 | 8_4:-49722154 | Msa1330530:CDS |
| ATTAGCTCCACAGCTTCACA+GGG | 0.603545 | 8_4:+49722845 | None:intergenic |
| ACCTGAAAGTCCAGTTTGGA+TGG | 0.603632 | 8_4:-49722046 | Msa1330530:CDS |
| ACTTGTACATGTCATTAAGA+GGG | 0.611165 | 8_4:-49722268 | Msa1330530:CDS |
| TGGTGGATACAACACTAGAT+GGG | 0.611717 | 8_4:-49724157 | Msa1330530:CDS |
| GGTAACGAAGATAACAAGGC+CGG | 0.617903 | 8_4:+49723075 | None:intergenic |
| AAAGGTGCTGATAAAAGGAA+AGG | 0.621349 | 8_4:-49722530 | Msa1330530:CDS |
| CTTCAGTTAAGTATCACACA+TGG | 0.622062 | 8_4:-49723600 | Msa1330530:CDS |
| CAGCCTCCATATACAAAGTG+AGG | 0.626839 | 8_4:-49723512 | Msa1330530:intron |
| CTACCTCACTTTGTATATGG+AGG | 0.627831 | 8_4:+49723509 | None:intergenic |
| TTATACGCAACAGTTTGTCA+AGG | 0.631011 | 8_4:+49722912 | None:intergenic |
| GTGAGGTAACGAAGATAACA+AGG | 0.631966 | 8_4:+49723071 | None:intergenic |
| CAAGAAACACAACTAAGCGT+GGG | 0.635628 | 8_4:-49722153 | Msa1330530:CDS |
| TTATATATGATTCTACACTT+GGG | 0.637805 | 8_4:+49721343 | None:intergenic |
| CTGTGATGATTAAATGTCAA+GGG | 0.637969 | 8_4:-49722598 | Msa1330530:CDS |
| ATACTTGTTCGTGGCTATGG+TGG | 0.639114 | 8_4:-49724174 | Msa1330530:CDS |
| CAAGTGTAATCTCCCCAGCA+AGG | 0.650642 | 8_4:+49723101 | None:intergenic |
| TGAGAGCATGAAGGAATCAG+TGG | 0.658286 | 8_4:-49721532 | Msa1330530:CDS |
| ATACAAACTGAATTAAACAA+AGG | 0.659472 | 8_4:-49722548 | Msa1330530:CDS |
| TCTGTGATGATTAAATGTCA+AGG | 0.676323 | 8_4:-49722599 | Msa1330530:CDS |
| ACACTTGGGAGTGAAGGCAA+AGG | 0.686030 | 8_4:+49721357 | None:intergenic |
| TTGTGGTCCTGAGAGCATGA+AGG | 0.688445 | 8_4:-49721541 | Msa1330530:CDS |
| AAATTCAAGAATGAAGCGTG+TGG | 0.689017 | 8_4:-49721585 | Msa1330530:CDS |
| CAATTGTGTTGAGATGGAGA+AGG | 0.701994 | 8_4:-49721846 | Msa1330530:CDS |
| AGTTTCTTAGAATAGCAACA+AGG | 0.702556 | 8_4:-49723717 | Msa1330530:CDS |
| AGGACGTATATACCTTGCTG+GGG | 0.713855 | 8_4:-49723113 | Msa1330530:CDS |
| AGTGTGATTATGGTTGCTGG+AGG | 0.744527 | 8_4:-49722372 | Msa1330530:CDS |
| TGATGATTAAATGTCAAGGG+TGG | 0.754801 | 8_4:-49722595 | Msa1330530:CDS |
| TTAGCTCCACAGCTTCACAG+GGG | 0.790665 | 8_4:+49722846 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAACTAAAGAAACA+TGG | + | chr8_4:49722411-49722430 | None:intergenic | 15.0% |
| !! | AAATTAATATTCCATTCAAA+CGG | - | chr8_4:49722916-49722935 | Msa1330530:CDS | 15.0% |
| !!! | TATATATTTTTAGAAATGCA+AGG | + | chr8_4:49724010-49724029 | None:intergenic | 15.0% |
| !! | TCACACGAAAATATATAAAA+TGG | + | chr8_4:49721426-49721445 | None:intergenic | 20.0% |
| !!! | TTGATTTAACTTCAATTTTC+AGG | - | chr8_4:49721470-49721489 | Msa1330530:CDS | 20.0% |
| !!! | TTTTCTTTTTATAGTCTTCT+TGG | - | chr8_4:49721759-49721778 | Msa1330530:CDS | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+AGG | + | chr8_4:49722196-49722215 | None:intergenic | 20.0% |
| !!! | TCATATTTGTTAAACAGATT+TGG | - | chr8_4:49722522-49722541 | Msa1330530:CDS | 20.0% |
| !! | AAACTTTCTTCTTCTAATTT+GGG | + | chr8_4:49722630-49722649 | None:intergenic | 20.0% |
| !! | TCAAATATATAACACTTGTA+GGG | + | chr8_4:49722976-49722995 | None:intergenic | 20.0% |
| !! | TTCAAATATATAACACTTGT+AGG | + | chr8_4:49722977-49722996 | None:intergenic | 20.0% |
| !! | ATACAAACTGAATTAAACAA+AGG | - | chr8_4:49723124-49723143 | Msa1330530:CDS | 20.0% |
| !!! | TGATGGAAATTTATTTTTGT+TGG | + | chr8_4:49723376-49723395 | None:intergenic | 20.0% |
| !! | ACAAAAATAAATTTCCATCA+AGG | - | chr8_4:49723376-49723395 | Msa1330530:intron | 20.0% |
| !!! | TTGATTTGAACAGATATATT+AGG | - | chr8_4:49724063-49724082 | Msa1330530:CDS | 20.0% |
| !! | TTATATATGATTCTACACTT+GGG | + | chr8_4:49724332-49724351 | None:intergenic | 20.0% |
| !! | ATTATATATGATTCTACACT+TGG | + | chr8_4:49724333-49724352 | None:intergenic | 20.0% |
| !!! | CATCAACTTTTTGAAATCAT+TGG | + | chr8_4:49721809-49721828 | None:intergenic | 25.0% |
| ! | GATTTAGACATACTTTAAGT+TGG | - | chr8_4:49721868-49721887 | Msa1330530:CDS | 25.0% |
| ! | CATCATAATTTACTTTCAGA+TGG | - | chr8_4:49721925-49721944 | Msa1330530:CDS | 25.0% |
| !!! | TTCTTCTTCCAATTTTAAGA+GGG | - | chr8_4:49722012-49722031 | Msa1330530:CDS | 25.0% |
| ! | TCAAATAAGTTAATACGAAC+TGG | - | chr8_4:49722379-49722398 | Msa1330530:CDS | 25.0% |
| ! | TAACTAAAGAAACATGGTTA+GGG | + | chr8_4:49722405-49722424 | None:intergenic | 25.0% |
| ! | ATAACTAAAGAAACATGGTT+AGG | + | chr8_4:49722406-49722425 | None:intergenic | 25.0% |
| ! | AACTTTCTTCTTCTAATTTG+GGG | + | chr8_4:49722629-49722648 | None:intergenic | 25.0% |
| ! | CAAACTTTCTTCTTCTAATT+TGG | + | chr8_4:49722631-49722650 | None:intergenic | 25.0% |
| !!! | TATTTTTCTTGTTTCATGCT+GGG | - | chr8_4:49722693-49722712 | Msa1330530:CDS | 25.0% |
| ! | AATTTAGTACTTGGATCTTT+AGG | + | chr8_4:49722857-49722876 | None:intergenic | 25.0% |
| ! | CTGTACATAAATTTAGTACT+TGG | + | chr8_4:49722866-49722885 | None:intergenic | 25.0% |
| !! | TATCATGTCATAAAGAGTAT+TGG | + | chr8_4:49723107-49723126 | None:intergenic | 25.0% |
| ! | TTTAAATAGTCTAATGAAGC+AGG | + | chr8_4:49723199-49723218 | None:intergenic | 25.0% |
| !! | AATGAAATTTTTCGCTTGAT+CGG | + | chr8_4:49723476-49723495 | None:intergenic | 25.0% |
| ! | TAGGAAAATAAGAAAAGTGA+TGG | + | chr8_4:49723673-49723692 | None:intergenic | 25.0% |
| !!! | ATGGAATTACCTTTAAAGTT+AGG | + | chr8_4:49723978-49723997 | None:intergenic | 25.0% |
| ! | ACACTTTAGTAGTCTAAATT+TGG | - | chr8_4:49724249-49724268 | Msa1330530:intron | 25.0% |
| ! | TATGTGAACTACATTATTTG+TGG | + | chr8_4:49724383-49724402 | None:intergenic | 25.0% |
| ! | AGAGAAAACATAGTGTTGTT+TGG | - | chr8_4:49721275-49721294 | Msa1330530:three_prime_UTR | 30.0% |
| GTTGTTTGGAGATTCATTAA+CGG | - | chr8_4:49721289-49721308 | Msa1330530:three_prime_UTR | 30.0% | |
| ! | TTTTTATAGTCTTCTTGGCA+TGG | - | chr8_4:49721764-49721783 | Msa1330530:CDS | 30.0% |
| !! | CATACTTTAAGTTGGATGAT+AGG | - | chr8_4:49721876-49721895 | Msa1330530:CDS | 30.0% |
| AGTTTCTTAGAATAGCAACA+AGG | - | chr8_4:49721955-49721974 | Msa1330530:CDS | 30.0% | |
| ! | CTTCTTCTTCCAATTTTAAG+AGG | - | chr8_4:49722011-49722030 | Msa1330530:CDS | 30.0% |
| TTGGCTGTATTTCGTATATT+TGG | - | chr8_4:49722035-49722054 | Msa1330530:CDS | 30.0% | |
| ! | ATACTTTTCGCTACAATACA+TGG | - | chr8_4:49722110-49722129 | Msa1330530:CDS | 30.0% |
| ATAAGCTGTTAATCTCTTCA+GGG | + | chr8_4:49722339-49722358 | None:intergenic | 30.0% | |
| TTGTTAAACAGATTTGGAAG+TGG | - | chr8_4:49722528-49722547 | Msa1330530:CDS | 30.0% | |
| !! | GTATTTTTCTTGTTTCATGC+TGG | - | chr8_4:49722692-49722711 | Msa1330530:CDS | 30.0% |
| !! | ATTTTTCTTGTTTCATGCTG+GGG | - | chr8_4:49722694-49722713 | Msa1330530:CDS | 30.0% |
| ! | TGTATTTTCGATCATTTGCA+GGG | - | chr8_4:49722939-49722958 | Msa1330530:CDS | 30.0% |
| CATTGAAGATGAGATATAGT+TGG | + | chr8_4:49723004-49723023 | None:intergenic | 30.0% | |
| CAACTATATCTCATCTTCAA+TGG | - | chr8_4:49723002-49723021 | Msa1330530:CDS | 30.0% | |
| TCTGTGATGATTAAATGTCA+AGG | - | chr8_4:49723073-49723092 | Msa1330530:CDS | 30.0% | |
| CTGTGATGATTAAATGTCAA+GGG | - | chr8_4:49723074-49723093 | Msa1330530:CDS | 30.0% | |
| !! | TAAACAAAGGTGCTGATAAA+AGG | - | chr8_4:49723137-49723156 | Msa1330530:intron | 30.0% |
| AACTTGTACATGTCATTAAG+AGG | - | chr8_4:49723403-49723422 | Msa1330530:intron | 30.0% | |
| ACTTGTACATGTCATTAAGA+GGG | - | chr8_4:49723404-49723423 | Msa1330530:intron | 30.0% | |
| GAAAGTAAAAACACTGCAAT+TGG | - | chr8_4:49723569-49723588 | Msa1330530:CDS | 30.0% | |
| TCCAATTATTATGCAGCATA+TGG | - | chr8_4:49723603-49723622 | Msa1330530:CDS | 30.0% | |
| TCCATATGCTGCATAATAAT+TGG | + | chr8_4:49723607-49723626 | None:intergenic | 30.0% | |
| TAGTATGGTTGAAACAGATT+AGG | + | chr8_4:49723692-49723711 | None:intergenic | 30.0% | |
| TTTCAGATGGAACTATAGTA+TGG | + | chr8_4:49723707-49723726 | None:intergenic | 30.0% | |
| !! | AATTTGGAATGCTTTTCAGA+TGG | + | chr8_4:49723720-49723739 | None:intergenic | 30.0% |
| ! | AGTCTTTTCTTTGGACAATT+TGG | + | chr8_4:49723736-49723755 | None:intergenic | 30.0% |
| AAATTAAACCCTTTGATCCA+AGG | - | chr8_4:49723898-49723917 | Msa1330530:CDS | 30.0% | |
| ATGAACTTCATGTTCTTCAA+GGG | + | chr8_4:49723943-49723962 | None:intergenic | 30.0% | |
| AATGAACTTCATGTTCTTCA+AGG | + | chr8_4:49723944-49723963 | None:intergenic | 30.0% | |
| ! | GAAGAACATGAAGTTCATTT+TGG | - | chr8_4:49723945-49723964 | Msa1330530:intron | 30.0% |
| ! | CAAGAGTTGTATTGGTATTT+AGG | + | chr8_4:49724275-49724294 | None:intergenic | 30.0% |
| GAACAATCATTCCGAGTAAA+TGG | - | chr8_4:49721311-49721330 | Msa1330530:three_prime_UTR | 35.0% | |
| AATCATTCCGAGTAAATGGT+TGG | - | chr8_4:49721315-49721334 | Msa1330530:three_prime_UTR | 35.0% | |
| ATCATTCCGAGTAAATGGTT+GGG | - | chr8_4:49721316-49721335 | Msa1330530:three_prime_UTR | 35.0% | |
| AAGAAAATTGCTGTAGCAAG+AGG | + | chr8_4:49721588-49721607 | None:intergenic | 35.0% | |
| ! | CTTGCTACAGCAATTTTCTT+CGG | - | chr8_4:49721588-49721607 | Msa1330530:CDS | 35.0% |
| ATTGAACATGTAAGTGCTTC+TGG | - | chr8_4:49721846-49721865 | Msa1330530:CDS | 35.0% | |
| CTTAGAATAGCAACAAGGTT+TGG | - | chr8_4:49721960-49721979 | Msa1330530:CDS | 35.0% | |
| ! | TTTGTTAGCAGAAGCTTGTT+TGG | - | chr8_4:49721983-49722002 | Msa1330530:CDS | 35.0% |
| !! | TCTTCCAATTTTAAGAGGGT+TGG | - | chr8_4:49722016-49722035 | Msa1330530:CDS | 35.0% |
| CTTCAGTTAAGTATCACACA+TGG | - | chr8_4:49722072-49722091 | Msa1330530:CDS | 35.0% | |
| GTTAAGTATCACACATGGAT+TGG | - | chr8_4:49722077-49722096 | Msa1330530:CDS | 35.0% | |
| AGGTAGGTCTATTCCTTATT+TGG | - | chr8_4:49722180-49722199 | Msa1330530:CDS | 35.0% | |
| CATAAGCTGTTAATCTCTTC+AGG | + | chr8_4:49722340-49722359 | None:intergenic | 35.0% | |
| ACAGTTTGTCAAGGCTAAAA+AGG | + | chr8_4:49722754-49722773 | None:intergenic | 35.0% | |
| TTATACGCAACAGTTTGTCA+AGG | + | chr8_4:49722763-49722782 | None:intergenic | 35.0% | |
| TCGAAAATACACCGTTTGAA+TGG | + | chr8_4:49722930-49722949 | None:intergenic | 35.0% | |
| ! | GTGTATTTTCGATCATTTGC+AGG | - | chr8_4:49722938-49722957 | Msa1330530:CDS | 35.0% |
| TGATGATTAAATGTCAAGGG+TGG | - | chr8_4:49723077-49723096 | Msa1330530:CDS | 35.0% | |
| !! | AAAGGTGCTGATAAAAGGAA+AGG | - | chr8_4:49723142-49723161 | Msa1330530:intron | 35.0% |
| GTATACCTGTTGCAATTGAA+GGG | - | chr8_4:49723164-49723183 | Msa1330530:intron | 35.0% | |
| ! | AACTCCATTTCTGAGCATTT+TGG | - | chr8_4:49723332-49723351 | Msa1330530:intron | 35.0% |
| TGTACAAGTTGTATCCTTGA+TGG | + | chr8_4:49723393-49723412 | None:intergenic | 35.0% | |
| TGATAGCAATTGTGTTGAGA+TGG | - | chr8_4:49723820-49723839 | Msa1330530:intron | 35.0% | |
| AAGAAAGGGATTCCTAAGAA+AGG | - | chr8_4:49723852-49723871 | Msa1330530:CDS | 35.0% | |
| ! | GAACATGAAGTTCATTTTGG+AGG | - | chr8_4:49723948-49723967 | Msa1330530:intron | 35.0% |
| AAATGCAAGGAAAGAGACAA+TGG | + | chr8_4:49723997-49724016 | None:intergenic | 35.0% | |
| AAATTCAAGAATGAAGCGTG+TGG | - | chr8_4:49724087-49724106 | Msa1330530:CDS | 35.0% | |
| ! | TGGATCTGATATTGGAGTTT+TGG | - | chr8_4:49724107-49724126 | Msa1330530:CDS | 35.0% |
| !!! | GATATTGGAGTTTTGGTTTG+TGG | - | chr8_4:49724114-49724133 | Msa1330530:CDS | 35.0% |
| ! | GAATCTGAGTGTTTGAAGTT+AGG | - | chr8_4:49724180-49724199 | Msa1330530:CDS | 35.0% |
| TCATTCCGAGTAAATGGTTG+GGG | - | chr8_4:49721317-49721336 | Msa1330530:three_prime_UTR | 40.0% | |
| ! | TAACTTGCGAGAATAGGCAT+TGG | + | chr8_4:49721354-49721373 | None:intergenic | 40.0% |
| !! | GAAGCTTAACTTGCGAGAAT+AGG | + | chr8_4:49721360-49721379 | None:intergenic | 40.0% |
| AATCTGATCTGATCTGAGAG+TGG | + | chr8_4:49721399-49721418 | None:intergenic | 40.0% | |
| GATATACTTGTTCGTGGCTA+TGG | - | chr8_4:49721495-49721514 | Msa1330530:CDS | 40.0% | |
| !! | ATGGTGGATACAACACTAGA+TGG | - | chr8_4:49721514-49721533 | Msa1330530:CDS | 40.0% |
| ! | TGGTGGATACAACACTAGAT+GGG | - | chr8_4:49721515-49721534 | Msa1330530:CDS | 40.0% |
| ! | GTGGTTTAGTTGATTCTGGA+GGG | + | chr8_4:49721566-49721585 | None:intergenic | 40.0% |
| ! | AGAGGTGGTTTAGTTGATTC+TGG | + | chr8_4:49721570-49721589 | None:intergenic | 40.0% |
| AAAATTGCTGTAGCAAGAGG+TGG | + | chr8_4:49721585-49721604 | None:intergenic | 40.0% | |
| ACAGCCAACCCTCTTAAAAT+TGG | + | chr8_4:49722023-49722042 | None:intergenic | 40.0% | |
| CTACCTCACTTTGTATATGG+AGG | + | chr8_4:49722166-49722185 | None:intergenic | 40.0% | |
| CTCCATATACAAAGTGAGGT+AGG | - | chr8_4:49722164-49722183 | Msa1330530:CDS | 40.0% | |
| GACCTACCTCACTTTGTATA+TGG | + | chr8_4:49722169-49722188 | None:intergenic | 40.0% | |
| ATTTGGAAGTGGCAAAAGAC+AGG | - | chr8_4:49722539-49722558 | Msa1330530:CDS | 40.0% | |
| GTGAGGTAACGAAGATAACA+AGG | + | chr8_4:49722604-49722623 | None:intergenic | 40.0% | |
| TCTTCTAATTTGGGGAAGTG+AGG | + | chr8_4:49722621-49722640 | None:intergenic | 40.0% | |
| TGGGGATAAGCACTTCTATA+TGG | - | chr8_4:49722712-49722731 | Msa1330530:CDS | 40.0% | |
| ATCAAGTCCAAAAACCTGCA+TGG | - | chr8_4:49722787-49722806 | Msa1330530:intron | 40.0% | |
| ! | AATTCTAGCTGAAACCATGC+AGG | + | chr8_4:49722804-49722823 | None:intergenic | 40.0% |
| CATGATGTTCTCATCAGCTT+TGG | + | chr8_4:49723053-49723072 | None:intergenic | 40.0% | |
| TGATTAAATGTCAAGGGTGG+TGG | - | chr8_4:49723080-49723099 | Msa1330530:CDS | 40.0% | |
| GGTATACCTGTTGCAATTGA+AGG | - | chr8_4:49723163-49723182 | Msa1330530:intron | 40.0% | |
| TCTAATGAAGCAGGTCCATA+GGG | + | chr8_4:49723190-49723209 | None:intergenic | 40.0% | |
| CAGACATGACAGTGTGATTA+TGG | - | chr8_4:49723290-49723309 | Msa1330530:intron | 40.0% | |
| TCTGCCAAAATGCTCAGAAA+TGG | + | chr8_4:49723339-49723358 | None:intergenic | 40.0% | |
| ACAAGAAACACAACTAAGCG+TGG | - | chr8_4:49723518-49723537 | Msa1330530:CDS | 40.0% | |
| CAAGAAACACAACTAAGCGT+GGG | - | chr8_4:49723519-49723538 | Msa1330530:CDS | 40.0% | |
| ACAACTAAGCGTGGGAATTA+CGG | - | chr8_4:49723527-49723546 | Msa1330530:CDS | 40.0% | |
| ! | CCAAGAAGGAGTCTTTTCTT+TGG | + | chr8_4:49723745-49723764 | None:intergenic | 40.0% |
| CCAAAGAAAAGACTCCTTCT+TGG | - | chr8_4:49723742-49723761 | Msa1330530:intron | 40.0% | |
| AAAGACTCCTTCTTGGATAG+TGG | - | chr8_4:49723749-49723768 | Msa1330530:intron | 40.0% | |
| AGTAGATCCACTATCCAAGA+AGG | + | chr8_4:49723759-49723778 | None:intergenic | 40.0% | |
| CAATTGTGTTGAGATGGAGA+AGG | - | chr8_4:49723826-49723845 | Msa1330530:intron | 40.0% | |
| AGATGGAGAAGGTTGAAGAA+AGG | - | chr8_4:49723837-49723856 | Msa1330530:intron | 40.0% | |
| GATGGAGAAGGTTGAAGAAA+GGG | - | chr8_4:49723838-49723857 | Msa1330530:intron | 40.0% | |
| TTCTTAGTTTCAGCTGACCT+TGG | + | chr8_4:49723918-49723937 | None:intergenic | 40.0% | |
| !! | ATGAAGTTCATTTTGGAGGC+AGG | - | chr8_4:49723952-49723971 | Msa1330530:intron | 40.0% |
| CTGAACAGCAAGAGTTGTAT+TGG | + | chr8_4:49724283-49724302 | None:intergenic | 40.0% | |
| !! | ATACAACTCTTGCTGTTCAG+TGG | - | chr8_4:49724283-49724302 | Msa1330530:intron | 40.0% |
| CTACATTATTTGTGGTGCTC+TGG | + | chr8_4:49724375-49724394 | None:intergenic | 40.0% | |
| AAGCACCCCAACCATTTACT+CGG | + | chr8_4:49721325-49721344 | None:intergenic | 45.0% | |
| CAGGCTGATATACTTGTTCG+TGG | - | chr8_4:49721489-49721508 | Msa1330530:CDS | 45.0% | |
| ATACTTGTTCGTGGCTATGG+TGG | - | chr8_4:49721498-49721517 | Msa1330530:CDS | 45.0% | |
| ! | ATTCTGGAGGGAAGAGATGA+TGG | + | chr8_4:49721554-49721573 | None:intergenic | 45.0% |
| ! | GGTGGTTTAGTTGATTCTGG+AGG | + | chr8_4:49721567-49721586 | None:intergenic | 45.0% |
| !! | GCTAACGATGCTGCTTTGTT+CGG | - | chr8_4:49721612-49721631 | Msa1330530:intron | 45.0% |
| ! | CGCCAGCACTTTGTTTGTTT+GGG | - | chr8_4:49722133-49722152 | Msa1330530:CDS | 45.0% |
| ! | GCCAGCACTTTGTTTGTTTG+GGG | - | chr8_4:49722134-49722153 | Msa1330530:CDS | 45.0% |
| ACCCCAAACAAACAAAGTGC+TGG | + | chr8_4:49722138-49722157 | None:intergenic | 45.0% | |
| CAGCCTCCATATACAAAGTG+AGG | - | chr8_4:49722160-49722179 | Msa1330530:CDS | 45.0% | |
| ACAGGACGTATATACCTTGC+TGG | - | chr8_4:49722557-49722576 | Msa1330530:CDS | 45.0% | |
| CAGGACGTATATACCTTGCT+GGG | - | chr8_4:49722558-49722577 | Msa1330530:CDS | 45.0% | |
| AGGACGTATATACCTTGCTG+GGG | - | chr8_4:49722559-49722578 | Msa1330530:CDS | 45.0% | |
| GGTAACGAAGATAACAAGGC+CGG | + | chr8_4:49722600-49722619 | None:intergenic | 45.0% | |
| CACTTCTATATGGTCTTCCC+AGG | - | chr8_4:49722722-49722741 | Msa1330530:intron | 45.0% | |
| GGCTAAAAAGGAACACTCCT+GGG | + | chr8_4:49722742-49722761 | None:intergenic | 45.0% | |
| AGGCTAAAAAGGAACACTCC+TGG | + | chr8_4:49722743-49722762 | None:intergenic | 45.0% | |
| ! | GCTGAAACCATGCAGGTTTT+TGG | + | chr8_4:49722797-49722816 | None:intergenic | 45.0% |
| ! | AATTTTCCCCTGTGAAGCTG+TGG | - | chr8_4:49722820-49722839 | Msa1330530:intron | 45.0% |
| ATTAGCTCCACAGCTTCACA+GGG | + | chr8_4:49722830-49722849 | None:intergenic | 45.0% | |
| AATTAGCTCCACAGCTTCAC+AGG | + | chr8_4:49722831-49722850 | None:intergenic | 45.0% | |
| GTCTAATGAAGCAGGTCCAT+AGG | + | chr8_4:49723191-49723210 | None:intergenic | 45.0% | |
| GACAGTGTGATTATGGTTGC+TGG | - | chr8_4:49723297-49723316 | Msa1330530:intron | 45.0% | |
| AGTGTGATTATGGTTGCTGG+AGG | - | chr8_4:49723300-49723319 | Msa1330530:intron | 45.0% | |
| ATTATGGTTGCTGGAGGTAG+TGG | - | chr8_4:49723306-49723325 | Msa1330530:intron | 45.0% | |
| ATGGACCTGAAAGTCCAGTT+TGG | - | chr8_4:49723622-49723641 | Msa1330530:CDS | 45.0% | |
| ACCTGAAAGTCCAGTTTGGA+TGG | - | chr8_4:49723626-49723645 | Msa1330530:CDS | 45.0% | |
| GTAATAGCAGCCATCCAAAC+TGG | + | chr8_4:49723639-49723658 | None:intergenic | 45.0% | |
| GTTTGGATGGCTGCTATTAC+TGG | - | chr8_4:49723639-49723658 | Msa1330530:CDS | 45.0% | |
| ATTTCCATCTGCGATGTCTG+TGG | + | chr8_4:49723882-49723901 | None:intergenic | 45.0% | |
| TCAGCTGACCTTGGATCAAA+GGG | + | chr8_4:49723909-49723928 | None:intergenic | 45.0% | |
| TTCAGCTGACCTTGGATCAA+AGG | + | chr8_4:49723910-49723929 | None:intergenic | 45.0% | |
| GAAGCGTGTGGATCTGATAT+TGG | - | chr8_4:49724099-49724118 | Msa1330530:CDS | 45.0% | |
| ! | ACTGATTCCTTCATGCTCTC+AGG | + | chr8_4:49724141-49724160 | None:intergenic | 45.0% |
| ! | TGAGAGCATGAAGGAATCAG+TGG | - | chr8_4:49724140-49724159 | Msa1330530:CDS | 45.0% |
| AGAGAGTGAAGAGTGAAGCA+TGG | + | chr8_4:49724222-49724241 | None:intergenic | 45.0% | |
| GATTCTACACTTGGGAGTGA+AGG | + | chr8_4:49724324-49724343 | None:intergenic | 45.0% | |
| ! | GCGCCAGCACTTTGTTTGTT+TGG | - | chr8_4:49722132-49722151 | Msa1330530:CDS | 50.0% |
| CAAGTGTAATCTCCCCAGCA+AGG | + | chr8_4:49722574-49722593 | None:intergenic | 50.0% | |
| ! | GGGGAGATTACACTTGTTGC+CGG | - | chr8_4:49722578-49722597 | Msa1330530:CDS | 50.0% |
| TTAGCTCCACAGCTTCACAG+GGG | + | chr8_4:49722829-49722848 | None:intergenic | 50.0% | |
| TAGGGCCCTTCAATTGCAAC+AGG | + | chr8_4:49723172-49723191 | None:intergenic | 50.0% | |
| GTTGCAATTGAAGGGCCCTA+TGG | - | chr8_4:49723172-49723191 | Msa1330530:intron | 50.0% | |
| GCCATCCAAACTGGACTTTC+AGG | + | chr8_4:49723630-49723649 | None:intergenic | 50.0% | |
| TGGATGGCTGCTATTACTGG+AGG | - | chr8_4:49723642-49723661 | Msa1330530:CDS | 50.0% | |
| GTCTGTGGAACGCCTTTCTT+AGG | + | chr8_4:49723867-49723886 | None:intergenic | 50.0% | |
| GGAGGCAGGCCTAACTTTAA+AGG | - | chr8_4:49723966-49723985 | Msa1330530:intron | 50.0% | |
| ! | TTGTGGTCCTGAGAGCATGA+AGG | - | chr8_4:49724131-49724150 | Msa1330530:CDS | 50.0% |
| ACACTTGGGAGTGAAGGCAA+AGG | + | chr8_4:49724318-49724337 | None:intergenic | 50.0% | |
| CGTTCCACAGACATCGCAGA+TGG | - | chr8_4:49723875-49723894 | Msa1330530:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49721269 | 49724425 | 49721269 | ID=Msa1330530;Name=Msa1330530 |
| chr8_4 | mRNA | 49721269 | 49724425 | 49721269 | ID=Msa1330530-mRNA-1;Parent=Msa1330530;Name=Msa1330530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.71|0.62|0.75|1|1|8|168|663 |
| chr8_4 | exon | 49721269 | 49721618 | 49721269 | ID=Msa1330530-mRNA-1:exon:14458;Parent=Msa1330530-mRNA-1 |
| chr8_4 | exon | 49721707 | 49722401 | 49721707 | ID=Msa1330530-mRNA-1:exon:14457;Parent=Msa1330530-mRNA-1 |
| chr8_4 | exon | 49722476 | 49722734 | 49722476 | ID=Msa1330530-mRNA-1:exon:14456;Parent=Msa1330530-mRNA-1 |
| chr8_4 | exon | 49722828 | 49723155 | 49722828 | ID=Msa1330530-mRNA-1:exon:14455;Parent=Msa1330530-mRNA-1 |
| chr8_4 | exon | 49723513 | 49723750 | 49723513 | ID=Msa1330530-mRNA-1:exon:14454;Parent=Msa1330530-mRNA-1 |
| chr8_4 | exon | 49723840 | 49723921 | 49723840 | ID=Msa1330530-mRNA-1:exon:14453;Parent=Msa1330530-mRNA-1 |
| chr8_4 | exon | 49724052 | 49724202 | 49724052 | ID=Msa1330530-mRNA-1:exon:14452;Parent=Msa1330530-mRNA-1 |
| chr8_4 | exon | 49724369 | 49724425 | 49724369 | ID=Msa1330530-mRNA-1:exon:14451;Parent=Msa1330530-mRNA-1 |
| chr8_4 | CDS | 49724369 | 49724425 | 49724369 | ID=Msa1330530-mRNA-1:cds;Parent=Msa1330530-mRNA-1 |
| chr8_4 | CDS | 49724052 | 49724202 | 49724052 | ID=Msa1330530-mRNA-1:cds;Parent=Msa1330530-mRNA-1 |
| chr8_4 | CDS | 49723840 | 49723921 | 49723840 | ID=Msa1330530-mRNA-1:cds;Parent=Msa1330530-mRNA-1 |
| chr8_4 | CDS | 49723513 | 49723750 | 49723513 | ID=Msa1330530-mRNA-1:cds;Parent=Msa1330530-mRNA-1 |
| chr8_4 | CDS | 49722828 | 49723155 | 49722828 | ID=Msa1330530-mRNA-1:cds;Parent=Msa1330530-mRNA-1 |
| chr8_4 | CDS | 49722476 | 49722734 | 49722476 | ID=Msa1330530-mRNA-1:cds;Parent=Msa1330530-mRNA-1 |
| chr8_4 | CDS | 49721707 | 49722401 | 49721707 | ID=Msa1330530-mRNA-1:cds;Parent=Msa1330530-mRNA-1 |
| chr8_4 | CDS | 49721437 | 49721618 | 49721437 | ID=Msa1330530-mRNA-1:cds;Parent=Msa1330530-mRNA-1 |
| chr8_4 | three_prime_UTR | 49721269 | 49721436 | 49721269 | ID=Msa1330530-mRNA-1:three_prime_utr;Parent=Msa1330530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
