Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145280 | XP_003589210.1 | 91.304 | 69 | 6 | 0 | 62 | 130 | 27 | 95 | 4.56e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145280 | G7I3M6 | 91.304 | 69 | 6 | 0 | 62 | 130 | 27 | 95 | 2.18e-37 | 132 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026470 | Msa0145280 | 0.854102 | 1.539475e-61 | -8.615850e-47 |
| Msa0026490 | Msa0145280 | 0.816729 | 4.760035e-52 | -8.615850e-47 |
| Msa0145280 | Msa0145410 | 0.810182 | 1.308802e-50 | -8.615850e-47 |
| Msa0145280 | Msa1043790 | 0.820967 | 5.185674e-53 | -8.615850e-47 |
| Msa0145280 | Msa1043810 | 0.872863 | 2.292848e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145280 | MtrunA17_Chr1g0153601 | 91.304 | 69 | 6 | 0 | 62 | 130 | 27 | 95 | 4.20e-41 | 132 |
| Msa0145280 | MtrunA17_Chr1g0153581 | 86.957 | 69 | 9 | 0 | 62 | 130 | 27 | 95 | 8.44e-38 | 123 |
| Msa0145280 | MtrunA17_Chr1g0153561 | 75.325 | 77 | 19 | 0 | 54 | 130 | 19 | 95 | 4.28e-37 | 122 |
| Msa0145280 | MtrunA17_Chr1g0153611 | 75.385 | 65 | 16 | 0 | 65 | 129 | 29 | 93 | 3.07e-30 | 104 |
| Msa0145280 | MtrunA17_Chr1g0153551 | 53.030 | 66 | 31 | 0 | 65 | 130 | 35 | 100 | 2.26e-16 | 69.3 |
| Msa0145280 | MtrunA17_Chr1g0153541 | 51.515 | 66 | 32 | 0 | 65 | 130 | 38 | 103 | 4.21e-15 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCCTTAGCCGTGGTTT+TGG | 0.295002 | 1_4:-4954019 | Msa0145280:CDS |
| TGTTCCTTTCGAAGTTGATT+TGG | 0.344741 | 1_4:+4954226 | None:intergenic |
| ATTACTTTGGTGTTATTAGT+AGG | 0.353215 | 1_4:-4955001 | Msa0145280:CDS |
| AGCTTTCATGAAACAAAATA+TGG | 0.357016 | 1_4:+4954096 | None:intergenic |
| ACTGATTTGTCCGTCTTTGT+TGG | 0.364609 | 1_4:+4954069 | None:intergenic |
| CAAAATATGGCTCTCCATCC+AGG | 0.411421 | 1_4:+4954109 | None:intergenic |
| TTAGATTACTTAGATTACTT+TGG | 0.425054 | 1_4:-4955014 | Msa0145280:CDS |
| TGGTCCATAGGCACCGGCTT+TGG | 0.436522 | 1_4:+4954246 | None:intergenic |
| AGTATTGGAAATGGATAGTA+AGG | 0.441337 | 1_4:-4955054 | None:intergenic |
| CAAACCAAAGCCGGTGCCTA+TGG | 0.455404 | 1_4:-4954250 | Msa0145280:CDS |
| AATGCCTGTGTTTATCCCTT+CGG | 0.462697 | 1_4:-4954274 | Msa0145280:CDS |
| ACCGGCTTTGGTTTGTCCGA+AGG | 0.472684 | 1_4:+4954258 | None:intergenic |
| GAAATGGATAGTAAGGATGT+TGG | 0.477479 | 1_4:-4955047 | Msa0145280:CDS |
| CCGGCTTTGGTTTGTCCGAA+GGG | 0.495436 | 1_4:+4954259 | None:intergenic |
| AAATGGATAGTAAGGATGTT+GGG | 0.498325 | 1_4:-4955046 | Msa0145280:CDS |
| TAGGTTCTTACTACCCTGGA+TGG | 0.528156 | 1_4:-4954123 | Msa0145280:CDS |
| TCGAAGTTGATTTGGTCCAT+AGG | 0.530320 | 1_4:+4954234 | None:intergenic |
| GATTTAGGTTCTTACTACCC+TGG | 0.543944 | 1_4:-4954127 | Msa0145280:CDS |
| TCTTGCCAAAACCACGGCTA+AGG | 0.544398 | 1_4:+4954014 | None:intergenic |
| CCCTTCGGACAAACCAAAGC+CGG | 0.550311 | 1_4:-4954259 | Msa0145280:CDS |
| TTGATTTGGTCCATAGGCAC+CGG | 0.550954 | 1_4:+4954240 | None:intergenic |
| AAAATATGGCTCTCCATCCA+GGG | 0.594858 | 1_4:+4954110 | None:intergenic |
| TGGACCAAATCAACTTCGAA+AGG | 0.599482 | 1_4:-4954230 | Msa0145280:CDS |
| GTTGATTATCTCCTTAGCCG+TGG | 0.610542 | 1_4:-4954025 | Msa0145280:CDS |
| AAAGCTGATGCCAACAAAGA+CGG | 0.620958 | 1_4:-4954079 | Msa0145280:CDS |
| ATTAGTTCTTGCCAAAACCA+CGG | 0.621014 | 1_4:+4954008 | None:intergenic |
| AACAAAGACGGACAAATCAG+TGG | 0.638335 | 1_4:-4954067 | Msa0145280:CDS |
| AAGGCAGATATCAATAAAGA+CGG | 0.642966 | 1_4:-4954187 | Msa0145280:CDS |
| TTGTCCGAAGGGATAAACAC+AGG | 0.660183 | 1_4:+4954270 | None:intergenic |
| AGACGGACAAATCAGTGGCG+AGG | 0.670203 | 1_4:-4954062 | Msa0145280:CDS |
| TAAAGACGGTCGTTACACAA+AGG | 0.678917 | 1_4:-4954173 | Msa0145280:CDS |
| AGACGGTCGTTACACAAAGG+AGG | 0.680084 | 1_4:-4954170 | Msa0145280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGCTTTTATATTTTAAGAT+AGG | + | chr1_4:4954586-4954605 | None:intergenic | 15.0% |
| !!! | TGAATGTTTTTGAAATAAAA+TGG | + | chr1_4:4954655-4954674 | None:intergenic | 15.0% |
| !!! | TTGCTTTTATATTTTAAGAT+AGG | + | chr1_4:4954586-4954605 | None:intergenic | 15.0% |
| !!! | TGAATGTTTTTGAAATAAAA+TGG | + | chr1_4:4954655-4954674 | None:intergenic | 15.0% |
| !! | TTAGATTACTTAGATTACTT+TGG | - | chr1_4:4954039-4954058 | Msa0145280:CDS | 20.0% |
| !!! | AAAGGATAAACAATTACTTT+TGG | + | chr1_4:4954084-4954103 | None:intergenic | 20.0% |
| !! | ATACATTCATAGAAAAGAAA+AGG | + | chr1_4:4954102-4954121 | None:intergenic | 20.0% |
| !! | TCACATATATATACTGAAAA+TGG | - | chr1_4:4954121-4954140 | Msa0145280:CDS | 20.0% |
| !! | TATATATACTGAAAATGGAT+TGG | - | chr1_4:4954126-4954145 | Msa0145280:CDS | 20.0% |
| !!! | ACAAGTTTTTTTCTACAAAA+AGG | - | chr1_4:4954442-4954461 | Msa0145280:intron | 20.0% |
| !!! | TGAGATATTAGCTTTTAAAT+TGG | - | chr1_4:4954469-4954488 | Msa0145280:intron | 20.0% |
| !! | TTAGATTACTTAGATTACTT+TGG | - | chr1_4:4954039-4954058 | Msa0145280:CDS | 20.0% |
| !!! | AAAGGATAAACAATTACTTT+TGG | + | chr1_4:4954084-4954103 | None:intergenic | 20.0% |
| !! | ATACATTCATAGAAAAGAAA+AGG | + | chr1_4:4954102-4954121 | None:intergenic | 20.0% |
| !! | TCACATATATATACTGAAAA+TGG | - | chr1_4:4954121-4954140 | Msa0145280:CDS | 20.0% |
| !! | TATATATACTGAAAATGGAT+TGG | - | chr1_4:4954126-4954145 | Msa0145280:CDS | 20.0% |
| !!! | ACAAGTTTTTTTCTACAAAA+AGG | - | chr1_4:4954442-4954461 | Msa0145280:intron | 20.0% |
| !!! | TGAGATATTAGCTTTTAAAT+TGG | - | chr1_4:4954469-4954488 | Msa0145280:intron | 20.0% |
| !!! | ATTACTTTGGTGTTATTAGT+AGG | - | chr1_4:4954052-4954071 | Msa0145280:CDS | 25.0% |
| ! | TCTTATTGGTCAAAAAACAA+TGG | + | chr1_4:4954351-4954370 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr1_4:4954365-4954384 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr1_4:4954364-4954383 | Msa0145280:intron | 25.0% |
| ! | TGTTCAAGATATTTGACTAA+AGG | - | chr1_4:4954544-4954563 | Msa0145280:intron | 25.0% |
| ! | GTTCAAGATATTTGACTAAA+GGG | - | chr1_4:4954545-4954564 | Msa0145280:intron | 25.0% |
| ! | TGTCTATGATTATCATATTG+AGG | + | chr1_4:4954716-4954735 | None:intergenic | 25.0% |
| ! | TAGACAACTTGATAGAAATT+AGG | - | chr1_4:4954730-4954749 | Msa0145280:intron | 25.0% |
| ! | AAGGAACATTATCGAAAAAT+TGG | - | chr1_4:4954842-4954861 | Msa0145280:intron | 25.0% |
| ! | ACATTATCGAAAAATTGGAA+AGG | - | chr1_4:4954847-4954866 | Msa0145280:intron | 25.0% |
| !!! | AAAAAAGCTCTAAAGGATTT+AGG | - | chr1_4:4954911-4954930 | Msa0145280:intron | 25.0% |
| ! | AGCTTTCATGAAACAAAATA+TGG | + | chr1_4:4954960-4954979 | None:intergenic | 25.0% |
| !!! | ATTACTTTGGTGTTATTAGT+AGG | - | chr1_4:4954052-4954071 | Msa0145280:CDS | 25.0% |
| ! | TCTTATTGGTCAAAAAACAA+TGG | + | chr1_4:4954351-4954370 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr1_4:4954365-4954384 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr1_4:4954364-4954383 | Msa0145280:intron | 25.0% |
| ! | TGTTCAAGATATTTGACTAA+AGG | - | chr1_4:4954544-4954563 | Msa0145280:intron | 25.0% |
| ! | GTTCAAGATATTTGACTAAA+GGG | - | chr1_4:4954545-4954564 | Msa0145280:intron | 25.0% |
| ! | TGTCTATGATTATCATATTG+AGG | + | chr1_4:4954716-4954735 | None:intergenic | 25.0% |
| ! | TAGACAACTTGATAGAAATT+AGG | - | chr1_4:4954730-4954749 | Msa0145280:intron | 25.0% |
| ! | AAGGAACATTATCGAAAAAT+TGG | - | chr1_4:4954842-4954861 | Msa0145280:intron | 25.0% |
| ! | ACATTATCGAAAAATTGGAA+AGG | - | chr1_4:4954847-4954866 | Msa0145280:intron | 25.0% |
| !!! | AAAAAAGCTCTAAAGGATTT+AGG | - | chr1_4:4954911-4954930 | Msa0145280:intron | 25.0% |
| ! | AGCTTTCATGAAACAAAATA+TGG | + | chr1_4:4954960-4954979 | None:intergenic | 25.0% |
| TGGATTGAAAATGTGATTGT+TGG | - | chr1_4:4954167-4954186 | Msa0145280:CDS | 30.0% | |
| TATATTTAACCAAGACTCAG+AGG | + | chr1_4:4954227-4954246 | None:intergenic | 30.0% | |
| GTTCAAAAGTTGTCAAAAAG+TGG | + | chr1_4:4954271-4954290 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr1_4:4954338-4954357 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+GGG | - | chr1_4:4954390-4954409 | Msa0145280:intron | 30.0% | |
| !!! | GTTTATTTTTTGAGTGTGCT+TGG | + | chr1_4:4954519-4954538 | None:intergenic | 30.0% |
| ! | TTTAAGATAGGATTCCAAAC+TGG | + | chr1_4:4954574-4954593 | None:intergenic | 30.0% |
| TGATTATCATATTGAGGAGA+GGG | + | chr1_4:4954710-4954729 | None:intergenic | 30.0% | |
| ATGATTATCATATTGAGGAG+AGG | + | chr1_4:4954711-4954730 | None:intergenic | 30.0% | |
| AAGGCAGATATCAATAAAGA+CGG | - | chr1_4:4954866-4954885 | Msa0145280:intron | 30.0% | |
| TGGATTGAAAATGTGATTGT+TGG | - | chr1_4:4954167-4954186 | Msa0145280:CDS | 30.0% | |
| TATATTTAACCAAGACTCAG+AGG | + | chr1_4:4954227-4954246 | None:intergenic | 30.0% | |
| GTTCAAAAGTTGTCAAAAAG+TGG | + | chr1_4:4954271-4954290 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr1_4:4954338-4954357 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+GGG | - | chr1_4:4954390-4954409 | Msa0145280:intron | 30.0% | |
| !!! | GTTTATTTTTTGAGTGTGCT+TGG | + | chr1_4:4954519-4954538 | None:intergenic | 30.0% |
| ! | TTTAAGATAGGATTCCAAAC+TGG | + | chr1_4:4954574-4954593 | None:intergenic | 30.0% |
| TGATTATCATATTGAGGAGA+GGG | + | chr1_4:4954710-4954729 | None:intergenic | 30.0% | |
| ATGATTATCATATTGAGGAG+AGG | + | chr1_4:4954711-4954730 | None:intergenic | 30.0% | |
| AAGGCAGATATCAATAAAGA+CGG | - | chr1_4:4954866-4954885 | Msa0145280:intron | 30.0% | |
| GGAAACAATTCATGCTTGAT+TGG | - | chr1_4:4954147-4954166 | Msa0145280:CDS | 35.0% | |
| ATGTGATTGTTGGCAAAACT+AGG | - | chr1_4:4954177-4954196 | Msa0145280:CDS | 35.0% | |
| GTCAACAAAGTTGTCATCAA+AGG | - | chr1_4:4954389-4954408 | Msa0145280:intron | 35.0% | |
| GATTATCATATTGAGGAGAG+GGG | + | chr1_4:4954709-4954728 | None:intergenic | 35.0% | |
| ! | TGTTCCTTTCGAAGTTGATT+TGG | + | chr1_4:4954830-4954849 | None:intergenic | 35.0% |
| ! | GGAACTCAAAAAAGCTCTAA+AGG | - | chr1_4:4954904-4954923 | Msa0145280:intron | 35.0% |
| GGAAACAATTCATGCTTGAT+TGG | - | chr1_4:4954147-4954166 | Msa0145280:CDS | 35.0% | |
| ATGTGATTGTTGGCAAAACT+AGG | - | chr1_4:4954177-4954196 | Msa0145280:CDS | 35.0% | |
| GTCAACAAAGTTGTCATCAA+AGG | - | chr1_4:4954389-4954408 | Msa0145280:intron | 35.0% | |
| GATTATCATATTGAGGAGAG+GGG | + | chr1_4:4954709-4954728 | None:intergenic | 35.0% | |
| ! | TGTTCCTTTCGAAGTTGATT+TGG | + | chr1_4:4954830-4954849 | None:intergenic | 35.0% |
| ! | GGAACTCAAAAAAGCTCTAA+AGG | - | chr1_4:4954904-4954923 | Msa0145280:intron | 35.0% |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr1_4:4954328-4954347 | None:intergenic | 40.0% | |
| ATTGAGGAGAGGGGTTAAAT+AGG | + | chr1_4:4954700-4954719 | None:intergenic | 40.0% | |
| AATGCCTGTGTTTATCCCTT+CGG | - | chr1_4:4954779-4954798 | Msa0145280:intron | 40.0% | |
| !! | TCGAAGTTGATTTGGTCCAT+AGG | + | chr1_4:4954822-4954841 | None:intergenic | 40.0% |
| TGGACCAAATCAACTTCGAA+AGG | - | chr1_4:4954823-4954842 | Msa0145280:intron | 40.0% | |
| TAAAGACGGTCGTTACACAA+AGG | - | chr1_4:4954880-4954899 | Msa0145280:intron | 40.0% | |
| ! | GATTTAGGTTCTTACTACCC+TGG | - | chr1_4:4954926-4954945 | Msa0145280:intron | 40.0% |
| AAAATATGGCTCTCCATCCA+GGG | + | chr1_4:4954946-4954965 | None:intergenic | 40.0% | |
| AAAGCTGATGCCAACAAAGA+CGG | - | chr1_4:4954974-4954993 | Msa0145280:intron | 40.0% | |
| !! | ACTGATTTGTCCGTCTTTGT+TGG | + | chr1_4:4954987-4955006 | None:intergenic | 40.0% |
| AACAAAGACGGACAAATCAG+TGG | - | chr1_4:4954986-4955005 | Msa0145280:intron | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr1_4:4954328-4954347 | None:intergenic | 40.0% | |
| ATTGAGGAGAGGGGTTAAAT+AGG | + | chr1_4:4954700-4954719 | None:intergenic | 40.0% | |
| AATGCCTGTGTTTATCCCTT+CGG | - | chr1_4:4954779-4954798 | Msa0145280:intron | 40.0% | |
| !! | TCGAAGTTGATTTGGTCCAT+AGG | + | chr1_4:4954822-4954841 | None:intergenic | 40.0% |
| TGGACCAAATCAACTTCGAA+AGG | - | chr1_4:4954823-4954842 | Msa0145280:intron | 40.0% | |
| TAAAGACGGTCGTTACACAA+AGG | - | chr1_4:4954880-4954899 | Msa0145280:intron | 40.0% | |
| ! | GATTTAGGTTCTTACTACCC+TGG | - | chr1_4:4954926-4954945 | Msa0145280:intron | 40.0% |
| AAAATATGGCTCTCCATCCA+GGG | + | chr1_4:4954946-4954965 | None:intergenic | 40.0% | |
| AAAGCTGATGCCAACAAAGA+CGG | - | chr1_4:4954974-4954993 | Msa0145280:intron | 40.0% | |
| !! | ACTGATTTGTCCGTCTTTGT+TGG | + | chr1_4:4954987-4955006 | None:intergenic | 40.0% |
| AACAAAGACGGACAAATCAG+TGG | - | chr1_4:4954986-4955005 | Msa0145280:intron | 40.0% | |
| TAGCTAAGTCCTCTGAGTCT+TGG | - | chr1_4:4954215-4954234 | Msa0145280:CDS | 45.0% | |
| TGACTAAAGGGTGACCAGTT+TGG | - | chr1_4:4954557-4954576 | Msa0145280:intron | 45.0% | |
| TTGTCCGAAGGGATAAACAC+AGG | + | chr1_4:4954786-4954805 | None:intergenic | 45.0% | |
| !! | TTGATTTGGTCCATAGGCAC+CGG | + | chr1_4:4954816-4954835 | None:intergenic | 45.0% |
| TAGGTTCTTACTACCCTGGA+TGG | - | chr1_4:4954930-4954949 | Msa0145280:intron | 45.0% | |
| CAAAATATGGCTCTCCATCC+AGG | + | chr1_4:4954947-4954966 | None:intergenic | 45.0% | |
| GTTGATTATCTCCTTAGCCG+TGG | - | chr1_4:4955028-4955047 | Msa0145280:CDS | 45.0% | |
| ! | TATCTCCTTAGCCGTGGTTT+TGG | - | chr1_4:4955034-4955053 | Msa0145280:CDS | 45.0% |
| TAGCTAAGTCCTCTGAGTCT+TGG | - | chr1_4:4954215-4954234 | Msa0145280:CDS | 45.0% | |
| TGACTAAAGGGTGACCAGTT+TGG | - | chr1_4:4954557-4954576 | Msa0145280:intron | 45.0% | |
| TTGTCCGAAGGGATAAACAC+AGG | + | chr1_4:4954786-4954805 | None:intergenic | 45.0% | |
| !! | TTGATTTGGTCCATAGGCAC+CGG | + | chr1_4:4954816-4954835 | None:intergenic | 45.0% |
| TAGGTTCTTACTACCCTGGA+TGG | - | chr1_4:4954930-4954949 | Msa0145280:intron | 45.0% | |
| CAAAATATGGCTCTCCATCC+AGG | + | chr1_4:4954947-4954966 | None:intergenic | 45.0% | |
| GTTGATTATCTCCTTAGCCG+TGG | - | chr1_4:4955028-4955047 | Msa0145280:CDS | 45.0% | |
| ! | TATCTCCTTAGCCGTGGTTT+TGG | - | chr1_4:4955034-4955053 | Msa0145280:CDS | 45.0% |
| AGACGGTCGTTACACAAAGG+AGG | - | chr1_4:4954883-4954902 | Msa0145280:intron | 50.0% | |
| TCTTGCCAAAACCACGGCTA+AGG | + | chr1_4:4955042-4955061 | None:intergenic | 50.0% | |
| AGACGGTCGTTACACAAAGG+AGG | - | chr1_4:4954883-4954902 | Msa0145280:intron | 50.0% | |
| TCTTGCCAAAACCACGGCTA+AGG | + | chr1_4:4955042-4955061 | None:intergenic | 50.0% | |
| !! | CCGGCTTTGGTTTGTCCGAA+GGG | + | chr1_4:4954797-4954816 | None:intergenic | 55.0% |
| CCCTTCGGACAAACCAAAGC+CGG | - | chr1_4:4954794-4954813 | Msa0145280:intron | 55.0% | |
| !! | ACCGGCTTTGGTTTGTCCGA+AGG | + | chr1_4:4954798-4954817 | None:intergenic | 55.0% |
| CAAACCAAAGCCGGTGCCTA+TGG | - | chr1_4:4954803-4954822 | Msa0145280:intron | 55.0% | |
| AGACGGACAAATCAGTGGCG+AGG | - | chr1_4:4954991-4955010 | Msa0145280:CDS | 55.0% | |
| !! | CCGGCTTTGGTTTGTCCGAA+GGG | + | chr1_4:4954797-4954816 | None:intergenic | 55.0% |
| CCCTTCGGACAAACCAAAGC+CGG | - | chr1_4:4954794-4954813 | Msa0145280:intron | 55.0% | |
| !! | ACCGGCTTTGGTTTGTCCGA+AGG | + | chr1_4:4954798-4954817 | None:intergenic | 55.0% |
| CAAACCAAAGCCGGTGCCTA+TGG | - | chr1_4:4954803-4954822 | Msa0145280:intron | 55.0% | |
| AGACGGACAAATCAGTGGCG+AGG | - | chr1_4:4954991-4955010 | Msa0145280:CDS | 55.0% | |
| !! | TGGTCCATAGGCACCGGCTT+TGG | + | chr1_4:4954810-4954829 | None:intergenic | 60.0% |
| !! | TGGTCCATAGGCACCGGCTT+TGG | + | chr1_4:4954810-4954829 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4954009 | 4955066 | 4954009 | ID=Msa0145280;Name=Msa0145280 |
| chr1_4 | mRNA | 4954009 | 4955066 | 4954009 | ID=Msa0145280-mRNA-1;Parent=Msa0145280;Name=Msa0145280-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.5|1|1|2|0|130 |
| chr1_4 | exon | 4954989 | 4955066 | 4954989 | ID=Msa0145280-mRNA-1:exon:2068;Parent=Msa0145280-mRNA-1 |
| chr1_4 | exon | 4954009 | 4954323 | 4954009 | ID=Msa0145280-mRNA-1:exon:2067;Parent=Msa0145280-mRNA-1 |
| chr1_4 | CDS | 4954989 | 4955066 | 4954989 | ID=Msa0145280-mRNA-1:cds;Parent=Msa0145280-mRNA-1 |
| chr1_4 | CDS | 4954009 | 4954323 | 4954009 | ID=Msa0145280-mRNA-1:cds;Parent=Msa0145280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
